<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:08:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U581531" ref_strand="+" ref_description="SGN-U581531 Tomato 200607#2 [51 ESTs aligned] (*GB) gi|82734614|gb|ABB89717.1| (e_value=0) EIN3-binding; (*ATH) AT2G25490.1 (e_value=0) | Symbol: None | F-box family protein (FBL6), contains similarity to grr1 GI:2407790 from (Glycine max) | chr2:10854461-10857606 REVERSE | Aliases: F13B15.15, F13B15_15; (*SWP) sp|Q9SKK0|EBF1_ARATH (e_value=2e-180) EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1; ">
      <seq>aaaaaaaaaaaaaaaaccattctttctttgttctctctttaacctcaatctttctttctctctctattttttgccctactctgttggggttctttaaaaatctgtatttttgagggttcttgaaaaaaaattggattttttcatctggaatgcgaatcttggttaaggatataatctgggttgtgtttttcttggttcaaaatctgatcttttttgctttacagtttgggattgaagaacaatcatgcctactcttgttaattacagtggtgatgatgagttctactctggtggatcgttttgttctgcagatttgggtctcatgttgtctttgggtcatgctgatgtttactgtcctcctaggaagagggctagaattagtggcccgtttgttgtcgaagaccgatcaaaggatccatctcttgaggttcttcctgatgaatgcctatttgagatcctcagacgattgcctggaggccgagaaaggggtgcagcagcttgtgtttctaagcgctggcttacagtgttgagtagcgtgaaaaactctgaaatttgcaggagcaagagctataacaatctaaatgacgctataatgatctctaaagatgaagatcttgaagttgaatgtgatggataccttaccaggtgtgtggaagggaagaaagctactgatattagacttgctgcaattgcagttgggacgtctacccgtggtggactaggaaagctttctattcgagggagtaactcagttcgtggtattactaatgtcggtctatctgctgttgcacatgggtgtccttctcttagggtcctatcattgtggaatgttccttctatcggagatgaaggtctcttggaggttgcaagagaatgccattcattagaaaagctagatctgagccactgtcgttcaatctccaacaagggtcttgttgcaatagcagagaattgccctagcttgacttcattgactattgaatcctgtccaaatattggaaacgaaggcttgcaagctgttggaaaatactgcaccaaactacagtctcttacaattaaggactgcccgcttgtcggagatcagggagttgctagtcttctgtcatcaggtgcttcaatgttaacaaaagtgaaactacatggtctaaacattaccgatttctcgcttgctgtcattggtcactacggcaagctgattaccagtcttaatctttgttcacttcgtaatgtgagtcagaagggattttgggtcatgggtaatgctcaaggcctccagtctttggtttctttgacaatcaccttatgccagggagccactgatgtcggtcttgaagctgtgggaaagggatgcccaaatctcaaatatatgtgcattcgcaagtgttgctttgtttctgacggtggtcttgttgctttcgctaaagaggctggatctctcgagagtttaatcttggaggagtgcaacagaattacccaagtaggtatccttaatgcagtttcaaactgcaggaagttaaagtctctttccctagtgaagtgcatgggaatcaaggatctagctctacaaacttccatgctgtctccatgtgaatctcttcggtccttgtctatccgaagctgtccaggattcgggagcagtagcttagctatggttggtaagctctgccccaagctgcatcaattagatctcagtgggctttgtggaataaccgatgctggtcttctcccactcttggagaactgtgaaggacttgttaaggtgaaccttagcgactgcctgaacttgacagaccaagtggtgctttcattggctatgcgacatggcgagacccttgaattgttgaatctcgacggatgcaggaaggttaccgatgcaagtttagtggcaattgcagattattgcccattacttattgatcttgatgtttctaagagtgcaataactgattctggtgtagctgctttatcccgtggagtgcaagtgaatttgcaggtcctttccttatcaggttgctccatggtatcgaacaagagtgtcctttctcttaaaaagttaggagagaatctactcggcttgaatctccagcattgctccgttagttgcagctcagtcgagcttcttgtggaggctttgtggaggtgtgacatcctctcctaaacccacaaagggcacaaggaaatgcattcgaaatggtcaaaacgaataagcagaaagctaaattggttcattcagcctggcaattacagaagcaaacatgagtgttctttttttagcccgtatatattcgtggctatctaatacttcagtgtctcggttgttttccaggacgctatggcatacatctttttcccaccattttttgcagggcttcgtcaaatcgaaaccctgtttcagccatttttggagacttacctccatcatgccatggtctcctgagaatacagtcacctagtactgagattaaaattttcactcatgctgctcctcgagagccaggcggtttgaatcattcagctaaaactgcgatagacaagattcatcgcgcatttgcctcttttgtgcttagctacattgcaggaatcagacactagttgtgtagttttttttcatgttcaagagtctttagtgttttcactgtaagtattctattatgtgtcttttagtctttagttgctttgagcaaatttctgttgttgtggtgcctgttattcccaggggcttggccattacaaccttatataggttgtttttttaaccagtccctagttttttgataggattatcaatgtcctatttttttaccaggttccatatattcagatttgtactccttgccgctatgttttttttttctatatataatgaagtaatagtttgttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5922" stop="1580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5625" g_stop="5356" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4496" g_stop="1885" g_length="2612"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="2881" r_length="2612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U581531" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2882</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5625" e_stop="5356"/>
          <exon e_start="4496" e_stop="1885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAAAAAAAAAACCATTCTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTGGTGAGTTTCAAAAAAACTTCATTTCTTTGTTATTTTAAGTTATGGGGTTGTTCATATTTCAATGAATTTTGAAGTTTCAGTTACAGTTTTTTGTTTTTTTCATCATGAATTACTGAGATAGAGATTGATTTGTTATGTTTTAGATTCATGTAATTTGTTAATCATGAATAAAGTTTATAAATTTATATAGTTACATGATTGTTGAGACTGAGAAGAAGATGAATTCTATTAAGGTTTAGATCCATGAATATAGTTTATAACTATGTCTAGGTGCATGATTGTTGATAACTTGAGATGAATATGGTTTATTAATTTACTGAAATGAAGATGATCTTTTAGGTTTAGATCCAATCATGTTCCTTTTTTTAAAAGGAAGTTGGTTATGAGATAATAACTAAGTTGAGTGACTATCTAAGAAATTAACTCATATAAACTTTGTATAGATGCATGATTGTTGAGGTGAATATGAACATTAATTTACTGAAATGGATAAAAAAAGGGAAAAAAGTTGTGATGAGGCTATATATTTGGCTTTGAAGATTAATTTCTGTGTTAGATAGATCTTCTTTTGTCTTATGTTCTGAATCTATGTTAAAGATTGGTAATATATTGAAGAAACTGTGGATTACTCTTTTGGGTTCTCTATCTAGAATGATCCATCTGATCTGATCTGAAGATGTATCTACATAATAGGTAGATCTAAAGGTTTAATTTACATGTGATGGTTGTTTATCTGTTGTGAAGTTGAAGTGAAAATTCATAAGAAATGGGCATATGGACTAGACAAAATTTAGTATGCTATAGCTTGTTGATTTAAGGGAAAATATAGCTGACAGTGTATGTTCTCCTTGGATTTCAGGTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTT</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAAAACCATTCTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTG-AAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603315" ref_strand="+" ref_description="SGN-U603315 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagaaacactataatacagtatatgaaaaaaatttttagcgatatttagttaacgataattagcatgttttagcaatgctaaatttaataatattttaattaatatgaataaaaattttagcatattttatttatgtgtatattgattatcactaaaaaatatttttattacaataacgtaccatgaattaattaatcggaccaatgaatacgttgattcacattataaaattacaaaaatatagtgtttcgaatgtctaaattaacatggtgccaatttggacttccaattattcatcttccacgcgttcaaatgtggtatttttctcttttcatattaagcgttatcgatgtatttttagattaaatttttaaatttttcaataaatttgagattattttaaaaatatataatattattaaattgttatattttaaagaggataaattagcgagatataatcatttctacatagttatcattaatacacatatgaaataaaattagtactagacgtgagtgacatttcgtgattaaagtctttattaatatatgttttgttaattaaaaattaaaatgtatttaataaatagccatttgccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="7904" stop="6702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7607" g_stop="7002" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U603315" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7607" e_stop="7002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATAGCCATTTGCCAAG</genome_strand>
        <mrna_strand>CAGAAACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATAGCCATTTGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="10061" stop="12850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10361" g_stop="12551" g_length="2191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>2191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10361" e_stop="12551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGGCAAGGGGCTGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACTGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAAAAAGTGCAAAATAAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCGGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCATGTAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGATGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATAACTTGGGCCTCCTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTAC-CTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12167" stop="10062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11867" g_stop="10361" g_length="1507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1507</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11867" e_stop="10361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAG-GTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACAGCCCCTTGCCGCTGTTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="10061" stop="12085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10361" g_stop="11785" g_length="1425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>1425</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10361" e_stop="11785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGCGGCAAGGGGCTGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACTGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAAAAAGTGCAAAATAAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCGGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCATGTAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGATGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATAACTTGGGCCTCCTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTAC-CTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCT</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="10092" stop="13241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10391" g_stop="11263" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11264" i_stop="12377" i_length="1114">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12378" g_stop="12941" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10391" e_stop="11263"/>
          <exon e_start="12378" e_stop="12941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACTGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAAAAAGTGCAAAATAAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCGGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCATGTAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGATGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATAACTTGGGCCTCCTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGATTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTACTTTTCGAACGAGGTATGGGCATTACGAATTTTTAGTGATGTCTTTTGGTCTAACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAATGAGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="10726" stop="12761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11026" g_stop="11226" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11227" i_stop="11969" i_length="743">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11970" g_stop="12498" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="723" r_length="522" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11026" e_stop="11226"/>
          <exon e_start="11970" e_stop="12498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="12378" stop="11454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12079" g_stop="11754" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12079" e_stop="11754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="13374" stop="11958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="12258" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="12258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="14760" stop="13983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14460" g_stop="14284" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14460" e_stop="14284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAAGGTAGGAAACTATCTCAATGGCCACCAAACTCTATCACACATGCATGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCGTCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U591335" ref_strand="+" ref_description="SGN-U591335 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157357062|emb|CAO63538.1| (e_value=8e-25) unnamed; (*ATH) AT1G45616.1 (e_value=3e-21)  Symbol: None | leucine-rich repeat family protein, contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to disease resistance protein (Lycopersicon esculentum) gi:3894383:gb:AAC78591 | chr1:17185990-17188974 REVERSE |... ; ">
      <seq>atggaacgtctctttttcgtttattcatttctttgttttgtgttgctaataagtcgaactttttgttcttcctttgagcatcatctttgctctcccactgaatgttctgctttgcttcagtttaagcaatcctttggagttaattccggcaactccgactgttttccttctttcccgaaaacaaagtcttggaatgagagtagggattgctgcagttgggatggagtcacttgtgacttgttaaacggtcatgttatcgccttggaacttagttgcagtcagattgttggcacttttcatcccaatagcaccctcttccaacttcatcatctccacacactaaaccttgcttactgttgtgcggaatttgagataatacgagaaaatataaacgcgaaaaacaagacaacagatttacgtggttcaccaataaattggctatgtccacgggaagagagggagcagttttattatggagaggcaaaaacagaattacagaatagggtttcccatagcgtctatatatagtgctaagctacgccctaacaggcttgggcccaacatacagaattgacagaaaattaagggcccaatacaacaacattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="24191" stop="25397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24491" g_stop="25097" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U591335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24491" e_stop="25097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACGTCTCTTTTTCGTTTATTCATTTCTTTGTTTTGTGTTGCTAATAAGTCGAACTTTTTGTTCTTCCTTTGAGCATCATCTTTGCTCTCCCACTGAATGTTCTGCTTTGCTTCAGTTTAAGCAATCCTTTGGAGTTAATTCCGGCAACTCCGACTGTTTTCCTTCTTTCCCGAAAACAAAGTCTTGGAATGAGAGTAGGGATTGCTGCAGTTGGGATGGAGTCACTTGTGACTTGTTAAACGGTCATGTTATCGCCTTGGAACTTAGTTGCAGTCAGATTGTTGGCACTTTTCATCCCAATAGCACCCTCTTCCAACTTCATCATCTCCACACACTAAACCTTGCTTACTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTATGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATTGACAGAAAATTAAGGGCCCAATACAACAACATTGT</genome_strand>
        <mrna_strand>ATGGAACGTCTCTTTTTCGTTTATTCATTTCTTTGTTTTGTGTTGCTAATAAGTCGAACTTTTTGTTCTTCCTTTGAGCATCATCTTTGCTCTCCCACTGAATGTTCTGCTTTGCTTCAGTTTAAGCAATCCTTTGGAGTTAATTCCGGCAACTCCGACTGTTTTCCTTCTTTCCCGAAAACAAAGTCTTGGAATGAGAGTAGGGATTGCTGCAGTTGGGATGGAGTCACTTGTGACTTGTTAAACGGTCATGTTATCGCCTTGGAACTTAGTTGCAGTCAGATTGTTGGCACTTTTCATCCCAATAGCACCCTCTTCCAACTTCATCATCTCCACACACTAAACCTTGCTTACTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTATGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATTGACAGAAAATTAAGGGCCCAATACAACAACATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567044" ref_strand="+" ref_description="SGN-U567044 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|14485575|gb|AAK63012.1|AF320028_1 (e_value=2e-142) heme; (*ATH) AT2G26670.1 (e_value=6e-103)  Symbol: None | heme oxygenase 1 (HO1) (HY1), identical to plastid heme oxygenase (HY1) (Arabidopsis thaliana) GI:4877362, heme oxygenase 1 (Arabidopsis thaliana) GI:4530591 GB:AF132475; annotation updated per Seth J. Davis at University of Wisconsin... ; ">
      <seq>gaaatttgaaaaacttcccataaattccattaaaaaacaatcatttttatattcatttttctacatatttcatcatatagatacactgattgttgtatctattagcttttgcttggaagaaacccttatacacattaaagaatactataaagattcaattttgtatagcaatcatcacttctttcttgttctaatccattcaatgaagaaggttaatctgtccttttcacttctctttttttttcaaataccctttgttcaagactcttcctttaagatggcttctatatcacccttatctcaatctcaaccccttttggagaaacctcagtttacagttttgaacaagtctcaaaatcagtttttttcaatacccttttcaagattcactcaaagttgtaatctttctttgaaaaaatcaaggatggtggttgtttcagcaacaactgctgctgagaaatcaaataagaggtatcctggtgaggctaaggggtttgtggaggaaatgaggtttgtggctatgaagttgcatactaaggaccaggctaaggaaggggaaaaagagcctgtagatcagcctttggccaagtgggagcctagtgttgaagggtacttgaagttcttggtggatagcaaattggtttatgatactttggaaaaaattgtggaaaacgctcctttttcctgagtatgctgagttcaggaatacaggattagaaaggtctgaggttctagcaaaggatttggaatggtttaggcagcagggtcatgccatcccggaaccatcaactcctggtgtcacctatgctagttacttagaggagctatcagaaaaggatcctcaagcatttatttgccatttttacaacacctactttgctcattcagctggaggccgcatgatagggaaaaaggtagctgaaaaggtacttgacaagaaagagctggaattctacaaatgggacggcgatctttctcagctgctgcagaatgttagggataagctgaacaaagttgcagaaaactggactagagaggagaagaatcattgtctggaagagacagagaagtcattcaagttctccggggccattctccgtttgatattttcttgatgcacaactttgcgctttgtttcctcgttttaacttgtacattggatggttgaaaggtcaaatttctttgaatatttgtgttccttttcactttctttctgtctatgttgtgtaagaacttgattataaataagtgctacatcattattcaacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="32814" stop="36804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33114" g_stop="33801" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125">
            <donor d_prob="0.953" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34927" g_stop="35150" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="914" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36019" g_stop="36126" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="915" r_stop="1022" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.188" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36255" g_stop="36504" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1023" r_stop="1272" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U567044" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1270</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33114" e_stop="33801"/>
          <exon e_start="34927" e_stop="35150"/>
          <exon e_start="36019" e_stop="36126"/>
          <exon e_start="36255" e_stop="36504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAA-GAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCC-TTTTCCTGAGTGTGAGTTTTTCTTAATTTATGTGCATCTGTTAGTGTTGTAATATGTTGTTTTGTTTGGTTCATGGTATTGACAATTGAATAACTTGACTGATTGGTTCTGCTTTGGGGTGTTTTGTTTGGTTCATGGGTATTGACAATTGAACCATTTGACTGATTGGTTCAGCTGTGTGTGTGTGGTGGGGGGGGTGGGGGGGGATTAGTATGTTATACTCTTTTAACTGTGGAATTTTGAGATGAGTTTTTCAATTCTGTTGGTACCTATGCTGCTTTTTTGTCATTGATTCTTTGATATCCATTAAGGTTCTAATATATTGTTTTGTTTGGTTCATGCTATTGATAATTGAAAACGCTTGATGGATTCCTCCTTTTGTGGGAATATATTATACTCTTTAATCAGTTGAGGAGTAGTCTCTGATCCTCATTTTCTTTTGTGTAAACAGAAAGTTCCCAGTTGTATAGAAAATCATGCTTAGTAGATTCTTTACTTTTTGGTATATTACATGTATATGGCCAGTTTGACCATGTTTATGAATGAATATACTATACTTGCACTTGATCAAAAAAATAATTTACTCTTTAAACTTTGGAGATCATTGTGGAAAAGGTTTGTTGGTTTCTATTGGTATTTCTGAGCAACATGGTAGTTGATAATTGATGATTTTATTATCATCGAGTTGTGATCTTCGGTTCCCAAACAAGTAGATGTTGAAATTCATTCCATAAGCTGTAACTCAATAGTGAGCTAACAAAGACATGTAAAGGGATATGGTAGAATTTGTCTTCTGGATGATAGAGAAGCTCAGTTGTGAGAGAAGAACTGATTTGCTGATGTTGTTTTGAACCAATCAGTTGAATTTCAGCTCTAACTAATGACCCCAGGGCTGATCTGCTACGCTTCCTTTTTCTTTCCCTTTGGTTGTTTCAGCTTTATGTTTAGTAATGCTTTTTCACCAACGGAGTTCACAACATGAATAAGTTAACTTGCTTTACATACAAAGTACTTTGCTTTTCTTTTACGGCAAAGGCATGTGATCTGTGCCTTTCCAAGCACACTCTCCACATAGATGCATAAATAAATGAGTTGGTAGTAAAACAGAATCTTAGAACTCTTACATTTGACTGCAGATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAGGTCAGTGATCTCTTCTTTTAAGTTTTTAGTATTATTTCACATTGTTAGTCTGATACTGTGGTGTATAAAGGTAGAATTTTATCATAGAAATATGGAATGAACAAAAGCTTAGATGGTTCTAAGTCACAATTCGAAGGGTACCCTCTGATGACACCCAAAGATGTGACTTTGACACTTAGTTGGTCAATGAGGTGGGAGGAGAACCATCCATTTAAGCCTTAGTGAGCAGAGTTACCTAGTACGGTGCTAGTGAGAGGTAGCAGGTACTCAGTGTAATAGCGAGGTGCATCCGAGGCAACTCATGTGGAGATGACATTATTTTTGGTTCTCAATAAACTCAAGTCATTACACCCTTTTATTGATTCATATCTCTTCCCCTCTTTGTATTCTGTTTTCTGTTTGCCACTTGAGGTGCGTTACATAGGCCTTAAAATTTTCGTAATACCATTTTTCTCTGTTTACCATACTTCCATTCATCCACTCATTAGTACTTCAAATTTGATGGATAGTTGAAATGTTATAAGTTCCTATCTTTATCATCGCTTAGTCTCAAAATGACAAAATCAACTCAAGTCTATGATTACTGTAACAAATAAACTAAACAACGTTGTAAAGATGAAAATTTGAGCTTTCATCAGTGTTAAAAATGCTCGTCAGATGATAAATTCAGATTAGAAGAAATGTAAAAAAGGAGGCAATCCTATACTGTGGTTACGAATTCCTCTGTTAGACTAGTACTGTGGTAGAGGTTGTTGTCTCCCTATTGCATAGTTTTTGTTCCTTTCCTTCTTCCCTTCTTAGAGCTATGAATGTTTACAAGGAAAAAGGCAGTTACTTGTCGACAATCATGCTGCTTCTTCCTTTATAGGTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAAGTAAAATCATTAGCTTTCCCTTTACAAGTTTTCAACTTTTTAAAACTATAATCATTTCTTTCACCTTACTCGTTTCCATTGATGGGGTTAACGACTTAACATGATCCATTTTCGATTCTTTTGCTCAGAACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTC</genome_strand>
        <mrna_strand>GAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGGAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAATGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAAAATTGTGGAAAACGCTCCTTTTTCCTGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA................................................................................................................................AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578915" ref_strand="+" ref_description="SGN-U578915 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|147777824|emb|CAN62523.1| (e_value=2e-44) hypothetical; (*ATH) AT3G47650.1 (e_value=1e-35) | Symbol: None | bundle-sheath defective protein 2 family / bsd2 family, similar to bundle sheath defective protein 2 (Zea mays) GI:4732091 | chr3:17580523-17581539 FORWARD | Aliases: F1P2.200; ">
      <seq>gtaacctgaggttacatgtttttgttaaaaccaacacaattttggcaaattttctctgattaaattcaaaaaaaaataagtgaaattcaactgttttaatggcaaattctctgtgtttcacccctatagcttcattgaactctttcaataaaccaggtttaattaatcgaaatgggaattgcgctggaagaaagattcaattgatcaaagatgtaaccttcaactccaagagtaacttaagagtcgtagaagtgaaggccgctgacagtgataaagaaacaaaagtaaagagcatagtctgtcaaaagtgtgatggaaatggtgcagtggcgtgctcacaatgtaaaggcgctggggttaactccgtcgatcatttcaacggacggtttaaagccggtggactatgttggctgtgcagaggtaagaaagatatattgtgtggtgattgcaatggtgctggatttcttggtggatttatgagtacgttcgatgagtagacttcagatgcactggtctcgagtagactcggaggcaggtagaggcaggttcagaggcagatccggaatttaaacttgatgagttcagtttctataattctccgtattgaagtcattgtacttgtgaaattatgatttcataatttgatatttgttcaaactttaccttccctgtcacatatatttattcatgattcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="51129" stop="47384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50829" g_stop="50674" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49494" g_stop="49394" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="257" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48956" g_stop="48893" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="321" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48173" g_stop="48077" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="418" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47963" g_stop="47684" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="698" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U578915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50829" e_stop="50674"/>
          <exon e_start="49494" e_stop="49394"/>
          <exon e_start="48956" e_stop="48893"/>
          <exon e_start="48173" e_stop="48077"/>
          <exon e_start="47963" e_stop="47684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCTGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAGGTACATATATGTATGTATAGTGTATTTCTTTTTGTTCTTGAGCTTATTTTTATGCCTTTTTTGGTTTATGGGGGTTTGTGTTTTTAGTCAATTACTTGATGTTTAGGCCTTTTTTATGGTTTCTTGGTTCAATTTTGTTTGTGGGTCTGCAAACATTATATGTTTGATATTAAAGATTCAATTTTTTTTTCTACTAACATGGATAAGCACCCTGTTGTACTTAATTGAAGGTTTTGGTTCGAGCTTGGGGTATGAAGTAACTCTTGTTAGGGAACTCTTTTATACCCAATTTGGGACTTTGCAGTATGAATCCAGTAGTCGTGCTTCAATGTGAATACCGAAAGACTTAGTGAGAACCAATAAAAAAGATTCAATTTTTAAAACAAATTTGAGAATTGAGAACCTTTTCAGAAACAACTAATTAGCTTCATTTATATATTTTCCAAGTTCTATTTTTTCTGTACTTTTGCTTAGTGGAAACTATGTTTTATTGTCAATTCTTGATGTCTATGGCTTTTCATGTTTTCTTGGTTGAGTTTTGTTTGTGGGTCTGCAACTATATTTTGAACATAATGTGTTTGGTATTAAAAATTCAATTTTTTTACCAACAAGGGGTGCCATGGAGTGGTAAGAGTTCTTTCATACTTAGAGGTTTTGAGGCCTCTCGGGTTCGAGCGCGAGGTGTGGAGTCATCTTTGTTAGGGAGCATTTTATTTTCAAAGTGGGACTTCCCGATGCGAATTAGGATTTAGTCGGGCCAAACAGTGGTACATGACACCGGATGTGAACAACAATATACTCGGTGTTGTTCCACAAAGTGGGGGATGGGAACAAAAAAAGATTCGATATTTTTAATTTGAAAACTTTTTTAGAAACAACGAAATTCATTTCTTAACGGAAAACTCTCTTATGTTTCACACCTCTAGCTTCCTTTAATGCTGTCAATAAACCAGCTATAATTCCAGTTTCTATTTATTCTTGTACTCTTTTCCGCATTTTTGCTTAACGGGTCGTTATATATTTTGTCAATTACTTGTTGCATAGGCCTTTTTCATGCTTTCTTGGGTCATTTTTTGTTTGTGAGTCTGCAACTCTGTGTAAAATGTAAACGTGTTTGGTATTAAAGATCCAATCCTTTTCAGAACCTTTTATGTAGTTGTGATTTTATATACTTGTCAGGTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAGGTAATATTGGACTTCCATGCATAGATATTAGTGCAAAATAACAATTAAATGTGCTCAATCAATAAGCAATGGCTACATCCAAGTAAAGATTTACGGAAATCTGACATAATATGTGGTAGCATCTGCATCAATCATCATATTCAATTCATCACTCTATTTTATGTAAAACGGGATCAAGCAGCATAATTTCATTCGCAACAAGGATCTCTATGCCGTTTCTAATTTGTTATAAATCAAATAGGGAAGTTCGTAAAGATGAAAATCCTAAGCTTAATACTACCTGTTATCACAAGGGCTTACTTGAGTTCTATAGAAACTTCAGTTTGCTCCAGAAATTTCATTTCACCTCTTTTATGATCTGACTGTACCATATTTTCTTCTATTTCGTTGAGTTGGCTGTATTTTTCCAGAGATTGACACTATACTCTTTTTTTTAGGCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATGGTAAGTGATTGATGCATATTTGGTGGATTTTGAATTCTCACTCGTCTTTTATGACAAGGTTCAATGGACTTCTCTCGACAGACACGCTCATATATTTGTGAAAACCAAGTGACTAATAAAGTATTTCTTCATATTGTAATTGTGGCTTTGTTCATGCTCATTGCATTGTAGCAATGGAAATGATATTCAATGATCAGTTAGCATGTAACTGTTGCAAACAGGTTCAATGAATTCTCATGAGGGGAGCGGTATATTCCGGAGATTAATTTTTGACTAGATCTTAGTGAGACAACTGTTACATGTTAATCAACATAGTGTTTCTTTTGCTTGGATTTCTTTACTTAAAATGATTATATGCATCAAGTAGTAGTAGTTTTCCTTTTGATGTAGACCGCTTAATCGGAGTACACATCTTTTACAAACTTATCTCAAAAATTATTCATCAAAGTTATGTGAAAATTACGGTGTGTCTGAGTGAAAAGTGTCTAGTTCCAATACTTCTGCTAATGCTGCAGTCTTACTGGTTCTTCACCATGGTGTTACATGCTTATATTTGCTATTACAGTTCTTTTTCTTGCTTATACTCGTTATAATACCAAATTTCCGACTCATCAGAAGTAGATATCCATTCATAATGCTTACATAGACCTGAAATAATCCAATTTCAACTTGGATTTAGTTCACAATGTTCTGTTTCTTATACACTGTATCGCTCTCAGGTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAGGTACTTGTACTATCACTTGTGCCTTTTGGTTTCATATTGGTATTCAGTTCCTAAGTAAGTTAACAAAATTGCTGCAATGCCATGTTTTCATGTTTGCACTTGTTTTAATGCAGAGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGT</genome_strand>
        <mrna_strand>GTAACCTGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG.................................................................................................................AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U600522" ref_strand="+" ref_description="SGN-U600522 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157342948|emb|CAO65660.1| (e_value=3e-70) unnamed; (*ATH) AT2G26680.1 (e_value=4e-64) | Symbol: None | expressed protein, similar to NLPE1 (GI:13022100) (Rhizobium etli); | chr2:11350879-11352480 REVERSE | Aliases: F18A8.5, F18A8_5; ">
      <seq>gatttgcagaaaatttgtgaaggtatttactttaatagagttggagagttggttgaggtttatgaagcagctgtctctgatcataatgggaatattacctttcacaagttggttggtagacttgacaatagtgcagtatctgccaccggtgccaagttggcttttaagtcaaatgaagagattgaagttcaagtaaaaactattcctcttgatgaggttatccaagaaacggagcgtgtactactgataaagatagatgttcaaggttgggagtatcatgtacttaagggagcatcaaagttattgtcaaggaagaaaggtgaagcaccttacctgatctacgaggaagatgagcgattgttgcaagccagcaatagcagtgctaaggaaatccgggagtttctacagagtgtgggttacaaccattgcactcaacatggtacagatgcacactgcacaaaaacagattgagaaggttatcatctacaaataatcttctgctacaactctggaaggagcatcaattcttaaaaattttaaaatatttgctatacaccgatttaaacaatcaactatcatgtttttttgggtgctataagcttagaatgattggtatagaacaaaacctgatgcgacagttgttcaaagtcgagctctacttttttcagttcgtatgaattggaaggctgactgataccatgttgaggggattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="57242" stop="55117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56943" g_stop="56836" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56835" i_stop="56024" i_length="812">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56023" g_stop="55417" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="715" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U600522" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56943" e_stop="56836"/>
          <exon e_start="56023" e_stop="55417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGCAGAAAATTTGTGAAGGTATTTACTTTAATAGAGTTGGAGAGTTGGTTGAGGTTTATGAAGCAGCTGTCTCTGATCATAATGGGAATATTACCTTTCACAAGGTAGTTTTCAATTCAATTTGGTGTATATAAGTATTTCGAGTTCATATTATTGATCTTGTAGTTACTTGTCCTTCGTTTTCTATTACTATCTGTTGTTTCTTGTATTGTATTGTGTCGTTTTGTTTTAGTTTTCGTTCTGTTACTATTGCTATTTTTGTTATTATATGTTGTTTCTTGTACTTCCGTTACTTTTTTTCTTGGACTGTTTTTTGCTTGTCTTTGGTTTTTTTTTGATAGTATAACTAGTTTGCTAAATAGAATTTGTGTATATCAGACATATCATAGTTAAAGAACTGACCTTTATGCGATAACAATCATCGATTAACTGGACTGAATTGATTAAGTTATATGAAATCATGAGTAGTTTTTTCGTTGTTTGTATTGTTCTTTATCATTTTAGAGCTATGCGAAATTAAATTTTGAATGATGCTGTTTTTCTTGGTTTTTGTTTAGCAGTTATGTTTCTAGCTTGGTTATTTATGCGAAATATTTGATAATATTACTAATTTGCTAAATAGCAATCCTGTAACTTGGATATAATGTAGCTAGGTTTTGACCTTTACCATTAACATTCCTCAATTTACTTGTCCGCACTTGTATTTTCCTTTCTATTTTGGAGTTATGTGAGAGATGAAAATTCAAATGACACGATTTTGAATGAGATAAATAAATGACACTCTCATTCAATGACTTTGAAAAGGGAAGTTCAAAAAAATCAAGAGATAACGGCTTGTGTTCAGATTTATTTATTATGTTATTTGTTATTTTGTTGGCTACCCGCTAAATTTCTTCTGTACATGTATTGTTTCTAGTTGGTTGGTAGACTTGACAATAGTGCAGTATCTGCCACCGGTGCCAAGTTGGCTTTTAAGTCAAATGAAGAGATTGAAGTTCAAGTAAAAACTATTCCTCTTGATGAGGTTATCCAAGAAACGGAGCGTGTACTACTGATAAAGATAGATGTTCAAGGTTGGGAGTATCATGTACTTAAGGGAGCATCAAAGTTATTGTCAAGGAAGAAAGGTGAAGCACCTTACCTGATCTACGAGGAAGATGAGCGATTGTTGCAAGCCAGCAATAGCAGTGCTAAGGAAATCCGGGAGTTTCTACAGAGTGTGGGTTACAACCATTGCACTCAACATGGTACAGATGCACACTGCACAAAAACAGATTGAGAAGGTTATCATCTACAAATAATCTTCTGCTACAACTCTGGAAGGAGCATCAATTCTTAAAAATTTTAAAATATTTGCTATACACCGATTTAAACAATCAACTATCATGTTTTTTTGGGTGCTATAAGCTTAGAATGATTGGTATAGAACAAAACCTGATGCGACAGTTGTTCAAAGTCGAGCTCTACTTTTTTCAGTTCGTATGAATTGGAAGGCTGACTGATACCATGTTGAGGGGATTATG</genome_strand>
        <mrna_strand>GATTTGCAGAAAATTTGTGAAGGTATTTACTTTAATAGAGTTGGAGAGTTGGTTGAGGTTTATGAAGCAGCTGTCTCTGATCATAATGGGAATATTACCTTTCACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGGTAGACTTGACAATAGTGCAGTATCTGCCACCGGTGCCAAGTTGGCTTTTAAGTCAAATGAAGAGATTGAAGTTCAAGTAAAAACTATTCCTCTTGATGAGGTTATCCAAGAAACGGAGCGTGTACTACTGATAAAGATAGATGTTCAAGGTTGGGAGTATCATGTACTTAAGGGAGCATCAAAGTTATTGTCAAGGAAGAAAGGTGAAGCACCTTACCTGATCTACGAGGAAGATGAGCGATTGTTGCAAGCCAGCAATAGCAGTGCTAAGGAAATCCGGGAGTTTCTACAGAGTGTGGGTTACAACCATTGCACTCAACATGGTACAGATGCACACTGCACAAAAACAGATTGAGAAGGTTATCATCTACAAATAATCTTCTGCTACAACTCTGGAAGGAGCATCAATTCTTAAAAATTTTAAAATATTTGCTATACACCGATTTAAACAATCAACTATCATGTTTTTTTGGGTGCTATAAGCTTAGAATGATTGGTATAGAACAAAACCTGATGCGACAGTTGTTCAAAGTCGAGCTCTACTTTTTTCAGTTCGTATGAATTGGAAGGCTGACTGATACCATGTTGAGGGGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597734" ref_strand="+" ref_description="SGN-U597734 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147834452|emb|CAN67494.1| (e_value=4e-52) hypothetical; (*ATH) AT2G26680.1 (e_value=5e-48) | Symbol: None | expressed protein, similar to NLPE1 (GI:13022100) (Rhizobium etli); | chr2:11350879-11352480 REVERSE | Aliases: F18A8.5, F18A8_5; ">
      <seq>aaagtttcacttcaattcaagatccaatcttttttctcaaatttcttcaaaaaaaaagtgagttttccatggcaaattcatggagaagaaaccaacaaatcaagatcttcacccccaagaatctccttctctttttcttcacttctcttctcctccttattttcctctatctcacatcacaaacccaaccccacaatccaaaacccctcaaatctattaaaaatccaatctttaatctccccataaagccatttgattgttacaattcacctcaagcttaccctgttatagctagtgtagttgaaggtgtgaaatacccttttcttttttcactttcagattttgggaatttgcctgaaaaacctcataagaatattcagagggtacttaaaggaaaaccctttagaaagcctgatatatctgtgactctgcaagaattgttggaaaagatgaaaggtaaaaatgggatttttttggatgttggagctaatgtaggaatggctacttttgctgctgctgtaatggggtttaaagttttggcctttgaacctgtttttgagaatttgcagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="-" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="57803" stop="56630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57503" g_stop="56930" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="-" ref_id="SGN-U597734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57503" e_stop="56930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCACTTCAATTCAAGATCCAATCTTTTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGAAGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAGGGTAAAAATGGGATTTTTTTGGATGTTGGAGCTAATGTAGGAATGGCTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAAT</genome_strand>
        <mrna_strand>AAAGTTTCACTTCAATTCAAGATCCAATCTTTTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGAAGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAAGGTAAAAATGGGATTTTTTTGGATGTTGGAGCTAATGTAGGAATGGCTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603491" ref_strand="+" ref_description="SGN-U603491 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147765591|emb|CAN62658.1| (e_value=1e-11) hypothetical; ">
      <seq>gggtatggcacagataattaacaatttccaatgtgttcctctatctcttcatatactatgaaaaatttggttttcttgttcattttaattggcttgtcaaattcaagaatatatagtgcaagtatatatggatatccaggaagttttaatgtcctggattatggagctgctgctgatggcataactgatgattctcaagcattacttaatacatggaatgatgcatgttcatcctcagctggatatcctcaagtgattattcctccaaatatgatatttttacttagccctatgacactcataggcccctgcaattcacagaacatctattttgtggtatgaaaaaaaacaaacataaaccactctttaatattcctaacagtttaatttctatacactgacggttaaaaataaccagattacttaaaatagacaactcactacaacaaactagtcagtgtatataagttaaatcgtatttgaaaaatgtttgcccaagtgaactatgtgaattttcgtggctcttgtaggtgtccggtagtcttgtttcaccgagctcaccaagtgtatggaccgggcaagactcgagtcaatggctagctttcanaaatgttagcggtctagttgttggtggctcnnaaccattgatggtcaaggcaaaaaatggngggatcaatcatgtanataccaccctgaactggnnggatgcacaaaattanctccaactgcgttgaagtncattttttgcagtcananttcgatcagna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0223G07-cSRmr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0223G07.1" temp_strand="+" temp_description="C12HBa0223G07.1  AC235688.2 htgs_phase:1 submitted_to_sgn_as:gi|239369142|gb|AC235688.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-223G7, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="59444" stop="62150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59744" g_stop="59803" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59804" i_stop="60102" i_length="299">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.624" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60103" g_stop="60240" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="198" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="61345" i_length="1105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61346" g_stop="61849" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="700" r_length="502" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61850" i_stop="61989" i_length="140">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61990" g_stop="62016" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="727" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0223G07.1" gen_strand="+" ref_id="SGN-U603491" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0223G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59744" e_stop="59803"/>
          <exon e_start="60103" e_stop="60240"/>
          <exon e_start="61346" e_stop="61849"/>
          <exon e_start="61990" e_stop="62016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATGGCACAGATAATTAACAATTTCCAATGTGTTCCTCTATCTCTTCATATACTATGGTAAGAATTCTTGAAGCTCATTTATCATCCTATTTATTCGATTTTATGTTCAGCATTACTGGTAAAATTATTGTCACGTGACTAAGAGGTCACTGGGTTAAGCTGTGAAAACAATATAAACGCCTCTTGCAGAAATGCAGGATAAGGTTGTGTTCAATAAGTCTTTGCGTTCTGGCCCTTCTTTGGACCTGACACATGGTGGAAGCTTAGTGCACTGAACTGTCTTACCCTCTCGTTTATTAAATAACCATTTAGAATCAAAATAACAATAATAATCTTTTTTTTTTGTTTGTTTGTAGAAAAATTTGGTTTTCTTGTTCATTTTAATTGGCTTGTCAAATTCAAGAATATATAGTGCAAGTATATATGGATATCCAGGAAGTTTTAATGTCCTGGATTATGGAGCTGCTGCTGATGGCATAACTGATGATTCTCAAGTAAGTTAACTGTTATATATTTGTTCCTTCCTTTATTTGTCCCGATTGATCCAGATTCACATCGCATAAGGCTTATTAAAAGAGGAAGTGTTCCTGGTTGGTGTCCCACCAGTGGCGTACACAGAATATTTAGTGAGCGGTATCGATGTTTGAAAATTAATAAATAGTAAATAATTGATATAATATCATTATATAAATAAAAATGATTTAAAACGTAAGTCAAGTAAACTACTAAATTTTCCTCAATGAGTTTTCATATTTTGAAGTGTATTCATAATAGTCTCAATGGATATAATCCTAAGTACTAAATATTCTAGTGTAATTAGTTTATTTTACCTAATTTGACGATAAATAAGAGGTTGAAGGTTCGAATCCCTATAATATTAATTTTTTTTCCTGAAAATGTCTCAAAAATAATAAAAAAAAATTCGGCCTTACTGGGACTCAAACTTGAGCATCGCCTGAGGAAGAAATTCAACCAAGTAGGTCGGTCGACACCCCATGATGTAGGGTGGGTCCGCCCCTGTGTTGCACCAAGTGTCTGGTACCTATATTGTGGCCCCCACTAATCTAGATTCACACCGGATATATAAGACTTATTGAAAGAGAAAGTGCTCATGATACCTATATTGTGGCCCCCACTAATCTAAATTCGTGTTGCATAAGGTCTACAAAATGGAAAACACTCTCGGTTGTGGGCCCCGACTAGTCCGAGCTATTGCCATAACCCATGGAATGGAAAAGGCAAATAAAATATTTGCATATTTTCGTTAATTCATGAACATGATCTATAATGTCTATTAAAGGGGAAATTATAACACTCTTGGTTGTTCCCCAGTTAGTATGCAATAGCTCCATTGGATCCTGACTAATCTGGATTTGCATGAATCACCCCTAGTTCTAATGTTCACTAACGGCATTGAGGCCCCGGCCTATCTAAGGGCGAAACTTCTCCCTACAATGATTATCTTTTTTCATACACAGACCTTGAATCCAAGACCTTCGATCAATTCTTCTTGTTTGTATTCCTTCATTTTCCACTAAATATCAAATATATTTTATTTTTTTTGCTCTAGAAATTAAGGAATTAATTTTTTTTTTCCAGGCATTACTTAATACATGGAATGATGCATGTTCATCCTCAGCTGGATATCCTCAAGTGATTATTCCTCCAAATATGATATTTTTACTTAGCCCTATGACACTCATAGGCCCCTGCAATTCACAGAACATCTATTTTGTGGTATGAAAAAAAAACAAACATAAACCACTCTTTAATATTCCTAACAGTTTAATTTCTATACACTGACGGTTAAAAATAACCAGATTACTTAAAATAGACAACTCACTACAACAAACTAGTCAGTGTATATAAGTTAAATCGTATTTGAAAAATGTTTGCCCAAGTGAACTATGTGAATTTTCGTGGCTCTTGTAGGTGTCCGGTAGTCTTGTTTCACCGAGCTCACCAAGTGTATGGACCGGGCAAGACTCGAGTCAATGGCTAGCTTTCAGAAATGTTAGCGGTCTAGTTGTTGGTGGCTCAGGAACCATTGATGGTCAAGGCAAAAAATGGTGGGATCAATCATGTAGATACCACCCTGAACTGGTATGTCATAGATGCACTAACTTTCTTTCTCGATAATTGTAGTGTCTGGATCAGCTTGTGTGCACCAGTACATAAACGAATATTAGTTCTATTATATGGTCTTTGACATGGATTGATTATTTTTTTTTCCAACTTTTCAGGATGGATGCACAAAATTAGCTCCAACT</genome_strand>
        <mrna_strand>GGGTATGGCACAGATAATTAACAATTTCCAATGTGTTCCTCTATCTCTTCATATACTATG...........................................................................................................................................................................................................................................................................................................AAAAATTTGGTTTTCTTGTTCATTTTAATTGGCTTGTCAAATTCAAGAATATATAGTGCAAGTATATATGGATATCCAGGAAGTTTTAATGTCCTGGATTATGGAGCTGCTGCTGATGGCATAACTGATGATTCTCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTACTTAATACATGGAATGATGCATGTTCATCCTCAGCTGGATATCCTCAAGTGATTATTCCTCCAAATATGATATTTTTACTTAGCCCTATGACACTCATAGGCCCCTGCAATTCACAGAACATCTATTTTGTGGTATG-AAAAAAAACAAACATAAACCACTCTTTAATATTCCTAACAGTTTAATTTCTATACACTGACGGTTAAAAATAACCAGATTACTTAAAATAGACAACTCACTACAACAAACTAGTCAGTGTATATAAGTTAAATCGTATTTGAAAAATGTTTGCCCAAGTGAACTATGTGAATTTTCGTGGCTCTTGTAGGTGTCCGGTAGTCTTGTTTCACCGAGCTCACCAAGTGTATGGACCGGGCAAGACTCGAGTCAATGGCTAGCTTTCANAAATGTTAGCGGTCTAGTTGTTGGTGGCTC-NNAACCATTGATGGTCAAGGCAAAAAATGGNGGGATCAATCATGTANATACCACCCTGAACTG............................................................................................................................................GNNGGATGCACAAAATTANCTCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5625" PGL_stop="1885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5625" e_stop="5356"/>
            <exon e_start="4496" e_stop="1885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.932" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="5625" e_stop="5356" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.932">
            <gDNA_intron_boundary i_start="5355" i_stop="4497" i_length="859"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4496" e_stop="1885" e_length="2612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5625" stop="5356"/>
              <exon start="4496" stop="1885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAAAAAAAAAAAACCATTCTTTCTTTGTTCTCTCTTTAACCTCAATCTTTCTTTCTCTCTCTATTTTTTGCCCTACTCTGTTGGGGTTCTTTAAAAATCTGTATTTTTGAGGGTTCTTGAAAAAAAAATTGGATTTTTTCATCTGGAATGCGAATCTTGGTTAAGGATATAATCTGGGTTGTGTTTTTCTTGGTTCAAAATCTGATCTTTTTTGCTTTACAGTTTGGGATTGAAGAACAATCATGCCTACTCTTGTTAATTACAGTG : GTGATGATGAGTTCTACTCTGGTGGATCGTTTTGTTCTGCAGATTTGGGTCTCATGTTGTCTTTGGGTCATGCTGATGTTTACTGTCCTCCTAGGAAGAGGGCTAGAATTAGTGGCCCGTTTGTTGTCGAAGACCGATCAAAGGATCCATCTCTTGAGGTTCTTCCTGATGAATGCCTATTTGAGATCCTCAGACGATTGCCTGGAGGCCGAGAAAGGGGTGCAGCAGCTTGTGTTTCTAAGCGCTGGCTTACAGTGTTGAGTAGCGTGAAAAACTCTGAAATTTGCAGGAGCAAGAGCTATAACAATCTAAATGACGCTATAATGATCTCTAAAGATGAAGATCTTGAAGTTGAATGTGATGGATACCTTACCAGGTGTGTGGAAGGGAAGAAAGCTACTGATATTAGACTTGCTGCAATTGCAGTTGGGACGTCTACCCGTGGTGGACTAGGAAAGCTTTCTATTCGAGGGAGTAACTCAGTTCGTGGTATTACTAATGTCGGTCTATCTGCTGTTGCACATGGGTGTCCTTCTCTTAGGGTCCTATCATTGTGGAATGTTCCTTCTATCGGAGATGAAGGTCTCTTGGAGGTTGCAAGAGAATGCCATTCATTAGAAAAGCTAGATCTGAGCCACTGTCGTTCAATCTCCAACAAGGGTCTTGTTGCAATAGCAGAGAATTGCCCTAGCTTGACTTCATTGACTATTGAATCCTGTCCAAATATTGGAAACGAAGGCTTGCAAGCTGTTGGAAAATACTGCACCAAACTACAGTCTCTTACAATTAAGGACTGCCCGCTTGTCGGAGATCAGGGAGTTGCTAGTCTTCTGTCATCAGGTGCTTCAATGTTAACAAAAGTGAAACTACATGGTCTAAACATTACCGATTTCTCGCTTGCTGTCATTGGTCACTACGGCAAGCTGATTACCAGTCTTAATCTTTGTTCACTTCGTAATGTGAGTCAGAAGGGATTTTGGGTCATGGGTAATGCTCAAGGCCTCCAGTCTTTGGTTTCTTTGACAATCACCTTATGCCAGGGAGCCACTGATGTCGGTCTTGAAGCTGTGGGAAAGGGATGCCCAAATCTCAAATATATGTGCATTCGCAAGTGTTGCTTTGTTTCTGACGGTGGTCTTGTTGCTTTCGCTAAAGAGGCTGGATCTCTCGAGAGTTTAATCTTGGAGGAGTGCAACAGAATTACCCAAGTAGGTATCCTTAATGCAGTTTCAAACTGCAGGAAGTTAAAGTCTCTTTCCCTAGTGAAGTGCATGGGAATCAAGGATCTAGCTCTACAAACTTCCATGCTGTCTCCATGTGAATCTCTTCGGTCCTTGTCTATCCGAAGCTGTCCAGGATTCGGGAGCAGTAGCTTAGCTATGGTTGGTAAGCTCTGCCCCAAGCTGCATCAATTAGATCTCAGTGGGCTTTGTGGAATAACCGATGCTGGTCTTCTCCCACTCTTGGAGAACTGTGAAGGACTTGTTAAGGTGAACCTTAGCGACTGCCTGAACTTGACAGACCAAGTGGTGCTTTCATTGGCTATGCGACATGGCGAGACCCTTGAATTGTTGAATCTCGACGGATGCAGGAAGGTTACCGATGCAAGTTTAGTGGCAATTGCAGATTATTGCCCATTACTTATTGATCTTGATGTTTCTAAGAGTGCAATAACTGATTCTGGTGTAGCTGCTTTATCCCGTGGAGTGCAAGTGAATTTGCAGGTCCTTTCCTTATCAGGTTGCTCCATGGTATCGAACAAGAGTGTCCTTTCTCTTAAAAAGTTAGGAGAGAATCTACTCGGCTTGAATCTCCAGCATTGCTCCGTTAGTTGCAGCTCAGTCGAGCTTCTTGTGGAGGCTTTGTGGAGGTGTGACATCCTCTCCTAAACCCACAAAGGGCACAAGGAAATGCATTCGAAATGGTCAAAACGAATAAGCAGAAAGCTAAATTGGTTCATTCAGCCTGGCAATTACAGAAGCAAACATGAGTGTTCTTTTTTTAGCCCGTATATATTCGTGGCTATCTAATACTTCAGTGTCTCGGTTGTTTTCCAGGACGCTATGGCATACATCTTTTTCCCACCATTTTTTGCAGGGCTTCGTCAAATCGAAACCCTGTTTCAGCCATTTTTGGAGACTTACCTCCATCATGCCATGGTCTCCTGAGAATACAGTCACCTAGTACTGAGATTAAAATTTTCACTCATGCTGCTCCTCGAGAGCCAGGCGGTTTGAATCATTCAGCTAAAACTGCGATAGACAAGATTCATCGCGCATTTGCCTCTTTTGTGCTTAGCTACATTGCAGGAATCAGACACTAGTTGTGTAGTTTTTTTTCATGTTCAAGAGTCTTTAGTGTTTTCACTGTAAGTATTCTATTATGTGTCTTTTAGTCTTTAGTTGCTTTGAGCAAATTTCTGTTGTTGTGGTGCCTGTTATTCCCAGGGGCTTGGCCATTACAACCTTATATAGGTTGTTTTTTTAACCAGTCCCTAGTTTTTTGATAGGATTATCAATGTCCTATTTTTTTACCAGGTTCCATATATTCAGATTTGTACTCCTTGCCGCTATGTTTTTTTTTTCTATATATAATGAAGTAATAGTTTGTTT</gDNA_template>
            <first_frame> T  K  K  K  K  T  I  L  S  L  F  S  L  *  P  Q  S  F  F  L  S  L  F  F  A  L  L  C  W  G  S  L  K  I  C  I  F  E  G  S  *  K  K  N  W  I  F  S  S  G  M  R  I  L  V  K  D  I  I  W  V  V  F  F  L  V  Q  N  L  I  F  F  A  L  Q  F  G  I  E  E  Q  S  C  L  L  L  L  I  T  V  :  V  M  M  S  S  T  L  V  D  R  F  V  L  Q  I  W  V  S  C  C  L  W  V  M  L  M  F  T  V  L  L  G  R  G  L  E  L  V  A  R  L  L  S  K  T  D  Q  R  I  H  L  L  R  F  F  L  M  N  A  Y  L  R  S  S  D  D  C  L  E  A  E  K  G  V  Q  Q  L  V  F  L  S  A  G  L  Q  C  *  V  A  *  K  T  L  K  F  A  G  A  R  A  I  T  I  *  M  T  L  *  *  S  L  K  M  K  I  L  K  L  N  V  M  D  T  L  P  G  V  W  K  G  R  K  L  L  I  L  D  L  L  Q  L  Q  L  G  R  L  P  V  V  D  *  E  S  F  L  F  E  G  V  T  Q  F  V  V  L  L  M  S  V  Y  L  L  L  H  M  G  V  L  L  L  G  S  Y  H  C  G  M  F  L  L  S  E  M  K  V  S  W  R  L  Q  E  N  A  I  H  *  K  S  *  I  *  A  T  V  V  Q  S  P  T  R  V  L  L  Q  *  Q  R  I  A  L  A  *  L  H  *  L  L  N  P  V  Q  I  L  E  T  K  A  C  K  L  L  E  N  T  A  P  N  Y  S  L  L  Q  L  R  T  A  R  L  S  E  I  R  E  L  L  V  F  C  H  Q  V  L  Q  C  *  Q  K  *  N  Y  M  V  *  T  L  P  I  S  R  L  L  S  L  V  T  T  A  S  *  L  P  V  L  I  F  V  H  F  V  M  *  V  R  R  D  F  G  S  W  V  M  L  K  A  S  S  L  W  F  L  *  Q  S  P  Y  A  R  E  P  L  M  S  V  L  K  L  W  E  R  D  A  Q  I  S  N  I  C  A  F  A  S  V  A  L  F  L  T  V  V  L  L  L  S  L  K  R  L  D  L  S  R  V  *  S  W  R  S  A  T  E  L  P  K  *  V  S  L  M  Q  F  Q  T  A  G  S  *  S  L  F  P  *  *  S  A  W  E  S  R  I  *  L  Y  K  L  P  C  C  L  H  V  N  L  F  G  P  C  L  S  E  A  V  Q  D  S  G  A  V  A  *  L  W  L  V  S  S  A  P  S  C  I  N  *  I  S  V  G  F  V  E  *  P  M  L  V  F  S  H  S  W  R  T  V  K  D  L  L  R  *  T  L  A  T  A  *  T  *  Q  T  K  W  C  F  H  W  L  C  D  M  A  R  P  L  N  C  *  I  S  T  D  A  G  R  L  P  M  Q  V  *  W  Q  L  Q  I  I  A  H  Y  L  L  I  L  M  F  L  R  V  Q  *  L  I  L  V  *  L  L  Y  P  V  E  C  K  *  I  C  R  S  F  P  Y  Q  V  A  P  W  Y  R  T  R  V  S  F  L  L  K  S  *  E  R  I  Y  S  A  *  I  S  S  I  A  P  L  V  A  A  Q  S  S  F  L  W  R  L  C  G  G  V  T  S  S  P  K  P  T  K  G  T  R  K  C  I  R  N  G  Q  N  E  *  A  E  S  *  I  G  S  F  S  L  A  I  T  E  A  N  M  S  V  L  F  L  A  R  I  Y  S  W  L  S  N  T  S  V  S  R  L  F  S  R  T  L  W  H  T  S  F  S  H  H  F  L  Q  G  F  V  K  S  K  P  C  F  S  H  F  W  R  L  T  S  I  M  P  W  S  P  E  N  T  V  T  *  Y  *  D  *  N  F  H  S  C  C  S  S  R  A  R  R  F  E  S  F  S  *  N  C  D  R  Q  D  S  S  R  I  C  L  F  C  A  *  L  H  C  R  N  Q  T  L  V  V  *  F  F  F  M  F  K  S  L  *  C  F  H  C  K  Y  S  I  M  C  L  L  V  F  S  C  F  E  Q  I  S  V  V  V  V  P  V  I  P  R  G  L  A  I  T  T  L  Y  R  L  F  F  *  P  V  P  S  F  L  I  G  L  S  M  S  Y  F  F  T  R  F  H  I  F  R  F  V  L  L  A  A  M  F  F  F  S  I  Y  N  E  V  I  V  C   </first_frame>
            <second_frame>  P  K  K  K  K  P  F  F  L  C  S  L  F  N  L  N  L  S  F  S  L  Y  F  L  P  Y  S  V  G  V  L  *  K  S  V  F  L  R  V  L  E  K  K  I  G  F  F  H  L  E  C  E  S  W  L  R  I  *  S  G  L  C  F  S  W  F  K  I  *  S  F  L  L  Y  S  L  G  L  K  N  N  H  A  Y  S  C  *  L  Q  W :   *  *  *  V  L  L  W  W  I  V  L  F  C  R  F  G  S  H  V  V  F  G  S  C  *  C  L  L  S  S  *  E  E  G  *  N  *  W  P  V  C  C  R  R  P  I  K  G  S  I  S  *  G  S  S  *  *  M  P  I  *  D  P  Q  T  I  A  W  R  P  R  K  G  C  S  S  L  C  F  *  A  L  A  Y  S  V  E  *  R  E  K  L  *  N  L  Q  E  Q  E  L  *  Q  S  K  *  R  Y  N  D  L  *  R  *  R  S  *  S  *  M  *  W  I  P  Y  Q  V  C  G  R  E  E  S  Y  *  Y  *  T  C  C  N  C  S  W  D  V  Y  P  W  W  T  R  K  A  F  Y  S  R  E  *  L  S  S  W  Y  Y  *  C  R  S  I  C  C  C  T  W  V  S  F  S  *  G  P  I  I  V  E  C  S  F  Y  R  R  *  R  S  L  G  G  C  K  R  M  P  F  I  R  K  A  R  S  E  P  L  S  F  N  L  Q  Q  G  S  C  C  N  S  R  E  L  P  *  L  D  F  I  D  Y  *  I  L  S  K  Y  W  K  R  R  L  A  S  C  W  K  I  L  H  Q  T  T  V  S  Y  N  *  G  L  P  A  C  R  R  S  G  S  C  *  S  S  V  I  R  C  F  N  V  N  K  S  E  T  T  W  S  K  H  Y  R  F  L  A  C  C  H  W  S  L  R  Q  A  D  Y  Q  S  *  S  L  F  T  S  *  C  E  S  E  G  I  L  G  H  G  *  C  S  R  P  P  V  F  G  F  F  D  N  H  L  M  P  G  S  H  *  C  R  S  *  S  C  G  K  G  M  P  K  S  Q  I  Y  V  H  S  Q  V  L  L  C  F  *  R  W  S  C  C  F  R  *  R  G  W  I  S  R  E  F  N  L  G  G  V  Q  Q  N  Y  P  S  R  Y  P  *  C  S  F  K  L  Q  E  V  K  V  S  F  P  S  E  V  H  G  N  Q  G  S  S  S  T  N  F  H  A  V  S  M  *  I  S  S  V  L  V  Y  P  K  L  S  R  I  R  E  Q  *  L  S  Y  G  W  *  A  L  P  Q  A  A  S  I  R  S  Q  W  A  L  W  N  N  R  C  W  S  S  P  T  L  G  E  L  *  R  T  C  *  G  E  P  *  R  L  P  E  L  D  R  P  S  G  A  F  I  G  Y  A  T  W  R  D  P  *  I  V  E  S  R  R  M  Q  E  G  Y  R  C  K  F  S  G  N  C  R  L  L  P  I  T  Y  *  S  *  C  F  *  E  C  N  N  *  F  W  C  S  C  F  I  P  W  S  A  S  E  F  A  G  P  F  L  I  R  L  L  H  G  I  E  Q  E  C  P  F  S  *  K  V  R  R  E  S  T  R  L  E  S  P  A  L  L  R  *  L  Q  L  S  R  A  S  C  G  G  F  V  E  V  *  H  P  L  L  N  P  Q  R  A  Q  G  N  A  F  E  M  V  K  T  N  K  Q  K  A  K  L  V  H  S  A  W  Q  L  Q  K  Q  T  *  V  F  F  F  *  P  V  Y  I  R  G  Y  L  I  L  Q  C  L  G  C  F  P  G  R  Y  G  I  H  L  F  P  T  I  F  C  R  A  S  S  N  R  N  P  V  S  A  I  F  G  D  L  P  P  S  C  H  G  L  L  R  I  Q  S  P  S  T  E  I  K  I  F  T  H  A  A  P  R  E  P  G  G  L  N  H  S  A  K  T  A  I  D  K  I  H  R  A  F  A  S  F  V  L  S  Y  I  A  G  I  R  H  *  L  C  S  F  F  S  C  S  R  V  F  S  V  F  T  V  S  I  L  L  C  V  F  *  S  L  V  A  L  S  K  F  L  L  L  W  C  L  L  F  P  G  A  W  P  L  Q  P  Y  I  G  C  F  F  N  Q  S  L  V  F  *  *  D  Y  Q  C  P  I  F  L  P  G  S  I  Y  S  D  L  Y  S  L  P  L  C  F  F  F  L  Y  I  M  K  *  *  F  V  </second_frame>
            <third_frame>   Q  K  K  K  N  H  S  F  F  V  L  S  L  T  S  I  F  L  S  L  S  I  F  C  P  T  L  L  G  F  F  K  N  L  Y  F  *  G  F  L  K  K  K  L  D  F  F  I  W  N  A  N  L  G  *  G  Y  N  L  G  C  V  F  L  G  S  K  S  D  L  F  C  F  T  V  W  D  *  R  T  I  M  P  T  L  V  N  Y  S   : G  D  D  E  F  Y  S  G  G  S  F  C  S  A  D  L  G  L  M  L  S  L  G  H  A  D  V  Y  C  P  P  R  K  R  A  R  I  S  G  P  F  V  V  E  D  R  S  K  D  P  S  L  E  V  L  P  D  E  C  L  F  E  I  L  R  R  L  P  G  G  R  E  R  G  A  A  A  C  V  S  K  R  W  L  T  V  L  S  S  V  K  N  S  E  I  C  R  S  K  S  Y  N  N  L  N  D  A  I  M  I  S  K  D  E  D  L  E  V  E  C  D  G  Y  L  T  R  C  V  E  G  K  K  A  T  D  I  R  L  A  A  I  A  V  G  T  S  T  R  G  G  L  G  K  L  S  I  R  G  S  N  S  V  R  G  I  T  N  V  G  L  S  A  V  A  H  G  C  P  S  L  R  V  L  S  L  W  N  V  P  S  I  G  D  E  G  L  L  E  V  A  R  E  C  H  S  L  E  K  L  D  L  S  H  C  R  S  I  S  N  K  G  L  V  A  I  A  E  N  C  P  S  L  T  S  L  T  I  E  S  C  P  N  I  G  N  E  G  L  Q  A  V  G  K  Y  C  T  K  L  Q  S  L  T  I  K  D  C  P  L  V  G  D  Q  G  V  A  S  L  L  S  S  G  A  S  M  L  T  K  V  K  L  H  G  L  N  I  T  D  F  S  L  A  V  I  G  H  Y  G  K  L  I  T  S  L  N  L  C  S  L  R  N  V  S  Q  K  G  F  W  V  M  G  N  A  Q  G  L  Q  S  L  V  S  L  T  I  T  L  C  Q  G  A  T  D  V  G  L  E  A  V  G  K  G  C  P  N  L  K  Y  M  C  I  R  K  C  C  F  V  S  D  G  G  L  V  A  F  A  K  E  A  G  S  L  E  S  L  I  L  E  E  C  N  R  I  T  Q  V  G  I  L  N  A  V  S  N  C  R  K  L  K  S  L  S  L  V  K  C  M  G  I  K  D  L  A  L  Q  T  S  M  L  S  P  C  E  S  L  R  S  L  S  I  R  S  C  P  G  F  G  S  S  S  L  A  M  V  G  K  L  C  P  K  L  H  Q  L  D  L  S  G  L  C  G  I  T  D  A  G  L  L  P  L  L  E  N  C  E  G  L  V  K  V  N  L  S  D  C  L  N  L  T  D  Q  V  V  L  S  L  A  M  R  H  G  E  T  L  E  L  L  N  L  D  G  C  R  K  V  T  D  A  S  L  V  A  I  A  D  Y  C  P  L  L  I  D  L  D  V  S  K  S  A  I  T  D  S  G  V  A  A  L  S  R  G  V  Q  V  N  L  Q  V  L  S  L  S  G  C  S  M  V  S  N  K  S  V  L  S  L  K  K  L  G  E  N  L  L  G  L  N  L  Q  H  C  S  V  S  C  S  S  V  E  L  L  V  E  A  L  W  R  C  D  I  L  S  *  T  H  K  G  H  K  E  M  H  S  K  W  S  K  R  I  S  R  K  L  N  W  F  I  Q  P  G  N  Y  R  S  K  H  E  C  S  F  F  S  P  Y  I  F  V  A  I  *  Y  F  S  V  S  V  V  F  Q  D  A  M  A  Y  I  F  F  P  P  F  F  A  G  L  R  Q  I  E  T  L  F  Q  P  F  L  E  T  Y  L  H  H  A  M  V  S  *  E  Y  S  H  L  V  L  R  L  K  F  S  L  M  L  L  L  E  S  Q  A  V  *  I  I  Q  L  K  L  R  *  T  R  F  I  A  H  L  P  L  L  C  L  A  T  L  Q  E  S  D  T  S  C  V  V  F  F  H  V  Q  E  S  L  V  F  S  L  *  V  F  Y  Y  V  S  F  S  L  *  L  L  *  A  N  F  C  C  C  G  A  C  Y  S  Q  G  L  G  H  Y  N  L  I  *  V  V  F  L  T  S  P  *  F  F  D  R  I  I  N  V  L  F  F  Y  Q  V  P  Y  I  Q  I  C  T  P  C  R  Y  V  F  F  F  Y  I  *  *  S  N  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5389" stop="5356"/>
                    <exon start="4496" stop="2608"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1920</number_coding_nucleotides>
                  <number_encoded_amino_acids>640</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTIMPTLVNYSGDDEFYSGGSFCSADLGLMLSLGHADVYCPPRKRARISGPFVVEDRSKDPSLEVLPDECLFEILRRLPGGRERGAAACVSKRWLTVLSSVKNSEICRSKSYNNLNDAIMISKDEDLEVECDGYLTRCVEGKKATDIRLAAIAVGTSTRGGLGKLSIRGSNSVRGITNVGLSAVAHGCPSLRVLSLWNVPSIGDEGLLEVARECHSLEKLDLSHCRSISNKGLVAIAENCPSLTSLTIESCPNIGNEGLQAVGKYCTKLQSLTIKDCPLVGDQGVASLLSSGASMLTKVKLHGLNITDFSLAVIGHYGKLITSLNLCSLRNVSQKGFWVMGNAQGLQSLVSLTITLCQGATDVGLEAVGKGCPNLKYMCIRKCCFVSDGGLVAFAKEAGSLESLILEECNRITQVGILNAVSNCRKLKSLSLVKCMGIKDLALQTSMLSPCESLRSLSIRSCPGFGSSSLAMVGKLCPKLHQLDLSGLCGITDAGLLPLLENCEGLVKVNLSDCLNLTDQVVLSLAMRHGETLELLNLDGCRKVTDASLVAIADYCPLLIDLDVSKSAITDSGVAALSRGVQVNLQVLSLSGCSMVSNKSVLSLKKLGENLLGLNLQHCSVSCSSVELLVEALWRCDILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2491" stop="2174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVYIRGYLILQCLGCFPGRYGIHLFPTIFCRASSNRNPVSAIFGDLPPSCHGLLRIQSPSTEIKIFTHAAPREPGGLNHSAKTAIDKIHRAFASFVLSYIAGIRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7607" PGL_stop="7002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7607" e_stop="7002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="7607" e_stop="7002" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7607" stop="7002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAACACTATAATACAGTATATGAAAAAAATTTTTAGCGATATTTAGTTAACGATAATTAGCATGTTTTAGCAATGCTAAATTTAATAATATTTTAATTAATATGAATAAAAATTTTAGCATATTTTATTTATGTGTATATTGATTATCACTAAAAAATATTTTTATTACAATAACGTACCATGAATTAATTAATCGGACCAATGAATACGTTGATTCACATTATAAAATTACAAAAATATAGTGTTTCGAATGTCTAAATTAACATGGTGCCAATTTGGACTTCCAATTATTCATCTTCCACGCGTTCAAATGTGGTATTTTTCTCTTTTCATATTAAGCGTTATCGATGTATTTTTAGATTAAATTTTTAAATTTTTCAATAAATTTGAGATTATTTTAAAAATATATAATATTATTAAATTGTTATATTTTAAAGAGGATAAATTAGCGAGATATAATCATTTCTACATAGTTATCATTAATACACATATGAAATAAAATTAGTACTAGACGTGAGTGACATTTCGTGATTAAAGTCTTTATTAATATATGTTTTGTTAATTAAAAATTAAAATGTATTTAATAAATAGCCATTTGCCAAG</gDNA_template>
            <first_frame> I  K  H  Y  N  T  V  Y  E  K  N  F  *  R  Y  L  V  N  D  N  *  H  V  L  A  M  L  N  L  I  I  F  *  L  I  *  I  K  I  L  A  Y  F  I  Y  V  Y  I  D  Y  H  *  K  I  F  L  L  Q  *  R  T  M  N  *  L  I  G  P  M  N  T  L  I  H  I  I  K  L  Q  K  Y  S  V  S  N  V  *  I  N  M  V  P  I  W  T  S  N  Y  S  S  S  T  R  S  N  V  V  F  F  S  F  H  I  K  R  Y  R  C  I  F  R  L  N  F  *  I  F  Q  *  I  *  D  Y  F  K  N  I  *  Y  Y  *  I  V  I  F  *  R  G  *  I  S  E  I  *  S  F  L  H  S  Y  H  *  Y  T  Y  E  I  K  L  V  L  D  V  S  D  I  S  *  L  K  S  L  L  I  Y  V  L  L  I  K  N  *  N  V  F  N  K  *  P  F  A  K </first_frame>
            <second_frame>  L  N  T  I  I  Q  Y  M  K  K  I  F  S  D  I  *  L  T  I  I  S  M  F  *  Q  C  *  I  *  *  Y  F  N  *  Y  E  *  K  F  *  H  I  L  F  M  C  I  L  I  I  T  K  K  Y  F  Y  Y  N  N  V  P  *  I  N  *  S  D  Q  *  I  R  *  F  T  L  *  N  Y  K  N  I  V  F  R  M  S  K  L  T  W  C  Q  F  G  L  P  I  I  H  L  P  R  V  Q  M  W  Y  F  S  L  F  I  L  S  V  I  D  V  F  L  D  *  I  F  K  F  F  N  K  F  E  I  I  L  K  I  Y  N  I  I  K  L  L  Y  F  K  E  D  K  L  A  R  Y  N  H  F  Y  I  V  I  I  N  T  H  M  K  *  N  *  Y  *  T  *  V  T  F  R  D  *  S  L  Y  *  Y  M  F  C  *  L  K  I  K  M  Y  L  I  N  S  H  L  P   </second_frame>
            <third_frame>   *  T  L  *  Y  S  I  *  K  K  F  L  A  I  F  S  *  R  *  L  A  C  F  S  N  A  K  F  N  N  I  L  I  N  M  N  K  N  F  S  I  F  Y  L  C  V  Y  *  L  S  L  K  N  I  F  I  T  I  T  Y  H  E  L  I  N  R  T  N  E  Y  V  D  S  H  Y  K  I  T  K  I  *  C  F  E  C  L  N  *  H  G  A  N  L  D  F  Q  L  F  I  F  H  A  F  K  C  G  I  F  L  F  S  Y  *  A  L  S  M  Y  F  *  I  K  F  L  N  F  S  I  N  L  R  L  F  *  K  Y  I  I  L  L  N  C  Y  I  L  K  R  I  N  *  R  D  I  I  I  S  T  *  L  S  L  I  H  I  *  N  K  I  S  T  R  R  E  *  H  F  V  I  K  V  F  I  N  I  C  F  V  N  *  K  L  K  C  I  *  *  I  A  I  C  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0223G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10361" PGL_stop="12941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10361" e_stop="12551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="10361" e_stop="12551" e_length="2191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="12551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="11785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAGCGGCAAGGGGCTGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACTGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAAAAAGTGCAAAATAAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCGGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCATGTAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGATGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATAACTTGGGCCTCCTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACTACGACATCGACATTAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTACTTACACTAGAGGGCAGGGTTCGGGAAGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGCTTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTAATCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACCACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTAATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCCGTATTATTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</gDNA_template>
            <first_frame> K  N  S  G  K  G  L  W  *  R  S  W  E  D  V  L  *  G  K  R  T  S  T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  K  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  G  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  K  H  I  S  S  S  D  Y  R  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  M  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  N  L  G  L  L  L  *  L  I  Y  G  E  V  Y  P  P  N  F  E  G  *  K  K  R  *  V  L  E  P  R  A  S  *  V  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  S  R  A  N  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  A  R  R  L  H  Y  D  I  D  I  K  K  V  S  K  G  R  *  V  *  W  Y  L  H  *  R  A  G  F  G  K  L  L  S  S  T  N  S  V  F  T  T  D  C  S  W  G  T  T  S  D  R  S  T  L  L  R  G  A  Y  A  *  L  Q  R  M  L  W  M  W  G  D  W  T  Y  *  E  K  L  S  Q  T  K  L  *  T  P  N  S  *  R  *  R  W  S  W  *  R  P  L  I  W  R  T  W  W  S  R  *  W  W  S  P  K  R  Q  R  *  W  A  N  W  G  H  H  I  T  T  W  *  G  Q  R  T  D  E  R  *  G  P  L  L  P  F  P  G  R  S  E  A  E  A  S  N  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  F  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  V  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </first_frame>
            <second_frame>  R  T  A  A  R  G  C  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  L  T  E  E  V  I  R  E  G  E  D  G  E  T  E  K  V  Q  N  K  E  M  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  S  T  F  P  R  L  T  T  G  H  V  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  *  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  I  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  V  R  L  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  T  T  S  T  L  K  R  F  R  K  G  G  E  F  N  G  T  Y  T  R  G  Q  G  S  G  S  Y  S  V  R  P  I  Q  S  S  L  Q  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  G  P  M  L  D  S  R  E  C  Y  G  C  G  E  I  G  H  I  R  K  N  C  P  R  Q  S  Y  R  P  P  I  A  R  G  R  G  G  H  G  R  G  R  *  S  G  G  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  N  G  Q  T  G  A  T  T  S  Q  H  G  R  G  N  G  Q  T  N  D  R  A  H  C  Y  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  P  Y  Y  L  I  L  D  P  R  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  F  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  Y  I  G  L  V  W  *  T  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  K  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  S  N  Q  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  F  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M </second_frame>
            <third_frame>   E  Q  R  Q  G  A  V  V  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  L  H  *  L  R  R  *  *  E  K  G  R  M  G  K  L  K  K  C  K  I  R  K  C  H  P  N  L  P  *  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  R  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  H  F  L  V  *  L  Q  G  M  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  D  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  P  S  L  A  Y  L  W  R  S  I  S  P  E  L  *  G  I  E  K  E  M  S  S  *  A  *  S  K  L  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  L  V  L  K  S  E  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *  S  Q  T  T  S  L  R  H  R  H  *  K  G  F  E  R  E  V  S  L  M  V  L  T  L  E  G  R  V  R  E  V  T  Q  F  D  Q  F  S  L  H  Y  R  L  *  L  G  D  H  L  R  P  V  N  T  S  P  R  G  L  C  L  T  P  E  N  V  M  D  V  G  R  L  D  I  L  G  K  I  V  P  D  K  V  I  D  P  Q  *  L  E  V  E  V  V  M  V  E  A  V  N  L  E  D  V  V  V  E  V  M  V  V  T  K  T  A  E  V  M  G  K  L  G  P  P  H  H  N  M  V  G  A  T  D  R  R  T  I  G  P  I  V  T  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  R  I  I  *  S  W  I  H  V  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  S  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  I  *  V  L  F  G  K  L  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  R  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  R  T  R  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11678" stop="12550"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPLLPFPGRSEAEASNAVITGNLLVCDCMASVLFDPGSTFSYVSSSFANGLNLHCEFLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLDFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGVPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10920" stop="11564"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRSHIECQPIEAPPITWASFSSLFMEKYIPRTLRDRKRDEFLSLEQVRLSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEVVDFVIEVEGVKPDDFTTTSTLKRFRKGGEFNGTYTRGQGSGSYSVRPIQSSLQTVVGGPPQTGQHFSEGPMLDSRECYGCGEIGHIRKNCPRQSYRPPIARGRGGHGRGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10362" stop="10919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTAARGCGRGRGRTSSRGRGRAPSPSDTRAVTPPLTEEVIREGEDGETEKVQNKEMPPQPTLEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEISTFPRLTTGHVMTSDQHELFSKFLKLKPPVFKGAESEDAYNFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11026" e_stop="11226"/>
            <exon e_start="11970" e_stop="12498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.900"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="11026" e_stop="11226" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11227" i_stop="11969" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="11970" e_stop="12498" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11026" stop="11226"/>
              <exon start="11970" stop="12498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAAGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGATTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCAGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</gDNA_template>
            <first_frame> E  K  E  M  S  S  *  A  *  S  K  L  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  L  V  L  K  S  E  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  K  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  I  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  S  N  Q  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  F  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  </first_frame>
            <second_frame>  K  K  R  *  V  L  E  P  R  A  S  *  V  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  S  R  A  N  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  R  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  R  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  R  T  R  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q </second_frame>
            <third_frame>   K  R  D  E  F  L  S  L  E  Q  V  R  L  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  D  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  V  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11028" stop="11226"/>
                    <exon start="11970" stop="12496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDEFLSLEQVRLSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLDFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGVPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="10391" e_stop="11263"/>
            <exon e_start="12378" e_stop="12941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.892"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="10391" e_stop="11263" e_length="873"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11264" i_stop="12377" i_length="1114"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="12378" e_stop="12941" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10391" stop="11263"/>
              <exon start="12378" stop="12941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACTGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAAAAAGTGCAAAATAAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCGGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAAGCACATTTCCTCGTCTGACTACAGGGCATGTAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACAATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGATGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATAACTTGGGCCTCCTTCTCTAGCTTATTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGAAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGTTAGGTTGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTTAGTCCTCAAGAGCGAATTCGTCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGTTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGATTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTACTTTTCGAACGAGGTATGGGCATTACGAATTTTTAGTGATGTCTTTTGGTCTAACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAATGAGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</gDNA_template>
            <first_frame> S  W  E  D  V  L  *  G  K  R  T  S  T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  K  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  G  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  K  H  I  S  S  S  D  Y  R  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  Q  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  M  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  N  L  G  L  L  L  *  L  I  Y  G  E  V  Y  P  P  N  F  E  G  *  K  K  R  *  V  L  E  P  R  A  S  *  V  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  *  S  S  R  A  N  S  S  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  G  G  R  L  C  D  R  S  G  R  S  E  :  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  F  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  I  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  F  E  R  G  M  G  I  T  N  F  *  *  C  L  L  V  *  R  M  P  L  L  R  S  *  A  *  *  M  R  F  L  S  H  I  W  T  S  S  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  W  F  L </first_frame>
            <second_frame>  R  G  R  T  S  S  R  G  R  G  R  A  P  S  P  S  D  T  R  A  V  T  P  P  L  T  E  E  V  I  R  E  G  E  D  G  E  T  E  K  V  Q  N  K  E  M  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  S  T  F  P  R  L  T  T  G  H  V  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  *  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  I  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  V  R  L  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  F  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  Y  F  S  N  E  V  W  A  L  R  I  F  S  D  V  F  W  S  N  E  C  P  C  C  V  H  E  L  D  E  *  D  F  *  A  I  F  G  P  L  R  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  G  F   </second_frame>
            <third_frame>   V  G  G  R  P  L  G  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  L  L  H  *  L  R  R  *  *  E  K  G  R  M  G  K  L  K  K  C  K  I  R  K  C  H  P  N  L  P  *  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  R  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  H  F  L  V  *  L  Q  G  M  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  D  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  P  S  L  A  Y  L  W  R  S  I  S  P  E  L  *  G  I  E  K  E  M  S  S  *  A  *  S  K  L  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  L  V  L  K  S  E  F  V  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  R  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  V  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  T  F  R  T  R  Y  G  H  Y  E  F  L  V  M  S  F  G  L  T  N  A  P  A  A  F  M  S  L  M  N  E  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11263" stop="12940"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAQLQELLNKGFIRPSASPWGVPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGACVFSKIDLRSGYHQLKIRATDVPKTTFRTRYGHYEFLVMSFGLTNAPAAFMSLMNEIFKPYLDLFVIVFIDDILVYSKSKKEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFLGHVVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10392" stop="10919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRTSSRGRGRAPSPSDTRAVTPPLTEEVIREGEDGETEKVQNKEMPPQPTLEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEISTFPRLTTGHVMTSDQHELFSKFLKLKPPVFKGAESEDAYNFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12079" PGL_stop="10361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12079" e_stop="10361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="12079" e_stop="10361" e_length="1719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12079" stop="11754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11867" stop="10361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAATAATACGGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATTAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTGGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGATTAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACTTCCCGAACCCTGCCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTAATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGACGAATTCGCTCTTGAGGACTAAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACAACCTAACTTGCTCTAGGCTCAAGAACTCATCTCTTTTTCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAATAAGCTAGAGAAGGAGGCCCAAGTTATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATTGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTACATGCCCTGTAGTCAGACGAGGAAATGTGCTTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACCGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTTATTTTGCACTTTTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCAGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACAGCCCCTTGCCGCTGTTCTT</gDNA_template>
            <first_frame> R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  *  Y  G  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  R  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  D  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  S  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  F  R  N  L  F  N  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  N  L  T  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  K  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  L  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  T  C  P  V  V  R  R  G  N  V  L  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  I  S  L  F  C  T  F  S  V  S  P  S  S  P  S  L  I  T  S  S  V  S  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  Q  P  L  A  A  V  L </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  L  D  A  S  A  S  D  R  P  G  K  G  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  W  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  I  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  A  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  F  P  N  P  A  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  D  E  F  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  T  *  L  A  L  G  S  R  T  H  L  F  F  Y  P  S  K  F  G  G  Y  T  S  P  *  I  S  *  R  R  R  P  K  L  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  I  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  C  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  H  A  L  *  S  D  E  E  M  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  P  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  Y  F  A  L  F  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  S  P  L  P  L  F   </second_frame>
            <third_frame>   G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  I  I  R  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  *  M  P  P  L  Q  T  A  Q  G  K  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  G  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  L  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  K  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  R  T  L  P  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  T  N  S  L  L  R  T  K  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  Q  P  N  L  L  *  A  Q  E  L  I  S  F  S  I  P  Q  S  S  G  D  I  L  L  H  K  *  A  R  E  G  G  P  S  Y  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  S  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  M  P  C  S  Q  T  R  K  C  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  R  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  H  F  L  I  L  H  F  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  Q  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10838" stop="10545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLITCHYMPCSQTRKCAYFQWNIHAGSHSSRMLYLRSLRCWCRKHRGCLALIRQPAKISQNLIDHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11799" stop="11530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENVDPGSNNTEAMQSQTRRLPVMTALDASASDRPGKGNNGPYRSSVRCPYHVVMWWPQFAHYLCRFGDHHYLDHHVLQINGLYHDHLYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11639" stop="11385"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGGPSLPITSAVLVTTITSTTTSSRLTASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSGVKHRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10558" stop="10361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGISLFCTFSVSPSSPSLITSSVSGGVTALVSDGLGARPLPLEDVLPRPLPQPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11329" stop="11135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLNSPPFRNLFNVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="13070" PGL_stop="12258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13070" e_stop="12258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="13070" e_stop="12258" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="12258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCAACTGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCATTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTAAAAATTCGTAATGCCCATACCTCGTTCGAAAAGTAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAACACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  N  C  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  L  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  H  S  S  S  S  *  T  Q  Q  G  H  S  L  D  Q  K  T  S  L  K  I  R  N  A  H  T  S  F  E  K  *  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  N  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  L  V  R  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  W  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  I  H  Q  A  H  E  R  S  R  G  I  R  *  T  K  R  H  H  *  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  I  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  N  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  W  F  E  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  Q  L  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  K  N  S  *  C  P  Y  L  V  R  K  V  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  T  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12873" stop="12676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKISFIKLMNAAGAFVRPKDITKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="14460" PGL_stop="14284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14460" e_stop="14284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="14460" e_stop="14284" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14460" stop="14284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAAGGTAGGAAACTATCTCAATGGCCACCAAACTCTATCACACATGCATGAAGCATATCCTCCAACACTTGAATTGTTCGCTCAGACTGACCGTCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  *  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  L  L  K  V  G  N  Y  L  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  L  F  A  Q  T  D  R   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  C  *  R  *  E  T  I  S  M  A  T  K  L  Y  H  T  C  M  K  H  I  L  Q  H  L  N  C  S  L  R  L  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0223G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="24491" PGL_stop="25097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24491" e_stop="25097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24491" e_stop="25097" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24491" stop="25097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGAACGTCTCTTTTTCGTTTATTCATTTCTTTGTTTTGTGTTGCTAATAAGTCGAACTTTTTGTTCTTCCTTTGAGCATCATCTTTGCTCTCCCACTGAATGTTCTGCTTTGCTTCAGTTTAAGCAATCCTTTGGAGTTAATTCCGGCAACTCCGACTGTTTTCCTTCTTTCCCGAAAACAAAGTCTTGGAATGAGAGTAGGGATTGCTGCAGTTGGGATGGAGTCACTTGTGACTTGTTAAACGGTCATGTTATCGCCTTGGAACTTAGTTGCAGTCAGATTGTTGGCACTTTTCATCCCAATAGCACCCTCTTCCAACTTCATCATCTCCACACACTAAACCTTGCTTACTGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTATGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGCGTCTATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATTGACAGAAAATTAAGGGCCCAATACAACAACATTGT</gDNA_template>
            <first_frame> M  E  R  L  F  F  V  Y  S  F  L  C  F  V  L  L  I  S  R  T  F  C  S  S  F  E  H  H  L  C  S  P  T  E  C  S  A  L  L  Q  F  K  Q  S  F  G  V  N  S  G  N  S  D  C  F  P  S  F  P  K  T  K  S  W  N  E  S  R  D  C  C  S  W  D  G  V  T  C  D  L  L  N  G  H  V  I  A  L  E  L  S  C  S  Q  I  V  G  T  F  H  P  N  S  T  L  F  Q  L  H  H  L  H  T  L  N  L  A  Y  C  C  A  E  F  E  I  I  R  E  N  I  N  A  K  N  K  T  T  D  L  R  G  S  P  I  N  W  L  C  P  R  E  E  R  E  Q  F  Y  Y  G  E  A  K  T  E  L  Q  N  R  V  S  H  S  V  Y  I  *  C  *  A  T  P  *  Q  A  W  A  Q  H  T  E  L  T  E  N  *  G  P  N  T  T  T  L  </first_frame>
            <second_frame>  W  N  V  S  F  S  F  I  H  F  F  V  L  C  C  *  *  V  E  L  F  V  L  P  L  S  I  I  F  A  L  P  L  N  V  L  L  C  F  S  L  S  N  P  L  E  L  I  P  A  T  P  T  V  F  L  L  S  R  K  Q  S  L  G  M  R  V  G  I  A  A  V  G  M  E  S  L  V  T  C  *  T  V  M  L  S  P  W  N  L  V  A  V  R  L  L  A  L  F  I  P  I  A  P  S  S  N  F  I  I  S  T  H  *  T  L  L  T  V  V  R  N  L  R  *  Y  E  K  I  *  T  R  K  T  R  Q  Q  I  Y  V  V  H  Q  *  I  G  Y  V  H  G  K  R  G  S  S  F  I  M  E  R  Q  K  Q  N  Y  R  I  G  F  P  I  A  S  I  Y  S  A  K  L  R  P  N  R  L  G  P  N  I  Q  N  *  Q  K  I  K  G  P  I  Q  Q  H  C </second_frame>
            <third_frame>   G  T  S  L  F  R  L  F  I  S  L  F  C  V  A  N  K  S  N  F  L  F  F  L  *  A  S  S  L  L  S  H  *  M  F  C  F  A  S  V  *  A  I  L  W  S  *  F  R  Q  L  R  L  F  S  F  F  P  E  N  K  V  L  E  *  E  *  G  L  L  Q  L  G  W  S  H  L  *  L  V  K  R  S  C  Y  R  L  G  T  *  L  Q  S  D  C  W  H  F  S  S  Q  *  H  P  L  P  T  S  S  S  P  H  T  K  P  C  L  L  L  C  G  I  *  D  N  T  R  K  Y  K  R  E  K  Q  D  N  R  F  T  W  F  T  N  K  L  A  M  S  T  G  R  E  G  A  V  L  L  W  R  G  K  N  R  I  T  E  *  G  F  P  *  R  L  Y  I  V  L  S  Y  A  L  T  G  L  G  P  T  Y  R  I  D  R  K  L  R  A  Q  Y  N  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24491" stop="25018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MERLFFVYSFLCFVLLISRTFCSSFEHHLCSPTECSALLQFKQSFGVNSGNSDCFPSFPKTKSWNESRDCCSWDGVTCDLLNGHVIALELSCSQIVGTFHPNSTLFQLHHLHTLNLAYCCAEFEIIRENINAKNKTTDLRGSPINWLCPREEREQFYYGEAKTELQNRVSHSVYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="33114" PGL_stop="36504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33114" e_stop="33801"/>
            <exon e_start="34927" e_stop="35150"/>
            <exon e_start="36019" e_stop="36126"/>
            <exon e_start="36255" e_stop="36504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.988" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.188" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33114" e_stop="33801" e_length="688"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.988">
            <gDNA_intron_boundary i_start="33802" i_stop="34926" i_length="1125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34927" e_stop="35150" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="35151" i_stop="36018" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36019" e_stop="36126" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.188">
            <gDNA_intron_boundary i_start="36127" i_stop="36254" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36255" e_stop="36504" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33114" stop="33801"/>
              <exon start="34927" stop="35150"/>
              <exon start="36019" stop="36126"/>
              <exon start="36255" stop="36504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTTGAAAAACTTCCCATAAATTCCATTAAAAAACAATCATTTTTATATTCATTTTTCTACATATTTCATCATATAGATACACTGATTGTTGTATCTATTAGCTTTTGCTTGTAAGAAACCCTTATACACATTAAAGAATACTATAAAGATTCAATTTTGTATAGCAATCATCACTTCTTTCTTGTTCTAATCCATTCAAGAAGAAGGTTAATCTGTCCTTTTCACTTCTCTTTTTTTTTCAAATACCCTTTGTTCAAGACTCTTCCTTTAAGATGGCTTCTATATCACCCTTATCTCAATCTCAACCCCTTTTGGAGAAACCTCAGTTTACAGTTTTGAACAAGTCTCAAAATCAGTTTTTTTCAATACCCTTTTCAAGATTCACTCAAAGTTGTAATCTTTCTTTGAAAAAATCAAGGATGGTGGTTGTTTCAGCAACAACTGCTGCTGAGAAATCAAATAAGAGGTATCCTGGTGAGGCTAAGGGGTTTGTGGAGGAAATGAGGTTTGTGGCTATGAAGTTGCATACTAAGGACCAGGCTAAGGAAGGGGAAAAAGAGCCTGTAGATCAGCCTTTGGCCAAGTGGGAGCCTAGTGTTGAAGGGTACTTGAAGTTCTTGGTGGATAGCAAATTGGTTTATGATACTTTGGAAAGAATTGTGGAAAAGGCTCCTTTTCCTGAGT : ATGCTGAGTTCAGGAATACAGGATTAGAAAGGTCTGAGGTTCTAGCAAAGGATTTGGAATGGTTTAGGCAGCAGGGTCATGCCATCCCGGAACCATCAACTCCTGGTGTCACCTATGCTAGTTACTTAGAGGAGCTATCAGAAAAGGATCCTCAAGCATTTATTTGCCATTTTTACAACACCTACTTTGCTCATTCAGCTGGAGGCCGCATGATAGGGAAAAAG : GTAGCTGAAAAGGTACTTGACAAGAAAGAGCTGGAATTCTACAAATGGGACGGCGATCTTTCTCAGCTGCTGCAGAATGTTAGGGATAAGCTGAACAAAGTTGCAGAA : AACTGGACTAGAGAGGAGAAGAATCATTGTCTGGAAGAGACAGAGAAGTCATTCAAGTTCTCCGGGGCCATTCTCCGTTTGATATTTTCTTGATGCACAACTTTGCGCTTTGTTTCCTCGTTTTAACTTGTACATTGGATGGTTGAAAGGTCAAATTTCTTTGAATATTTGTGTTCCTTTTCACTTTCTTTCTGTCTATGTTGTGTAAGAACTTGATTATAAATAAGTGCTACATCATTATTCAACACTC</gDNA_template>
            <first_frame> E  I  *  K  T  S  H  K  F  H  *  K  T  I  I  F  I  F  I  F  L  H  I  S  S  Y  R  Y  T  D  C  C  I  Y  *  L  L  L  V  R  N  P  Y  T  H  *  R  I  L  *  R  F  N  F  V  *  Q  S  S  L  L  S  C  S  N  P  F  K  K  K  V  N  L  S  F  S  L  L  F  F  F  Q  I  P  F  V  Q  D  S  S  F  K  M  A  S  I  S  P  L  S  Q  S  Q  P  L  L  E  K  P  Q  F  T  V  L  N  K  S  Q  N  Q  F  F  S  I  P  F  S  R  F  T  Q  S  C  N  L  S  L  K  K  S  R  M  V  V  V  S  A  T  T  A  A  E  K  S  N  K  R  Y  P  G  E  A  K  G  F  V  E  E  M  R  F  V  A  M  K  L  H  T  K  D  Q  A  K  E  G  E  K  E  P  V  D  Q  P  L  A  K  W  E  P  S  V  E  G  Y  L  K  F  L  V  D  S  K  L  V  Y  D  T  L  E  R  I  V  E  K  A  P  F  P  E   : Y  A  E  F  R  N  T  G  L  E  R  S  E  V  L  A  K  D  L  E  W  F  R  Q  Q  G  H  A  I  P  E  P  S  T  P  G  V  T  Y  A  S  Y  L  E  E  L  S  E  K  D  P  Q  A  F  I  C  H  F  Y  N  T  Y  F  A  H  S  A  G  G  R  M  I  G  K  K  :  V  A  E  K  V  L  D  K  K  E  L  E  F  Y  K  W  D  G  D  L  S  Q  L  L  Q  N  V  R  D  K  L  N  K  V  A  E  :  N  W  T  R  E  E  K  N  H  C  L  E  E  T  E  K  S  F  K  F  S  G  A  I  L  R  L  I  F  S  *  C  T  T  L  R  F  V  S  S  F  *  L  V  H  W  M  V  E  R  S  N  F  F  E  Y  L  C  S  F  S  L  S  F  C  L  C  C  V  R  T  *  L  *  I  S  A  T  S  L  F  N  T  </first_frame>
            <second_frame>  K  F  E  K  L  P  I  N  S  I  K  K  Q  S  F  L  Y  S  F  F  Y  I  F  H  H  I  D  T  L  I  V  V  S  I  S  F  C  L  *  E  T  L  I  H  I  K  E  Y  Y  K  D  S  I  L  Y  S  N  H  H  F  F  L  V  L  I  H  S  R  R  R  L  I  C  P  F  H  F  S  F  F  F  K  Y  P  L  F  K  T  L  P  L  R  W  L  L  Y  H  P  Y  L  N  L  N  P  F  W  R  N  L  S  L  Q  F  *  T  S  L  K  I  S  F  F  Q  Y  P  F  Q  D  S  L  K  V  V  I  F  L  *  K  N  Q  G  W  W  L  F  Q  Q  Q  L  L  L  R  N  Q  I  R  G  I  L  V  R  L  R  G  L  W  R  K  *  G  L  W  L  *  S  C  I  L  R  T  R  L  R  K  G  K  K  S  L  *  I  S  L  W  P  S  G  S  L  V  L  K  G  T  *  S  S  W  W  I  A  N  W  F  M  I  L  W  K  E  L  W  K  R  L  L  F  L  S  :  M  L  S  S  G  I  Q  D  *  K  G  L  R  F  *  Q  R  I  W  N  G  L  G  S  R  V  M  P  S  R  N  H  Q  L  L  V  S  P  M  L  V  T  *  R  S  Y  Q  K  R  I  L  K  H  L  F  A  I  F  T  T  P  T  L  L  I  Q  L  E  A  A  *  *  G  K  R :   *  L  K  R  Y  L  T  R  K  S  W  N  S  T  N  G  T  A  I  F  L  S  C  C  R  M  L  G  I  S  *  T  K  L  Q  K :   T  G  L  E  R  R  R  I  I  V  W  K  R  Q  R  S  H  S  S  S  P  G  P  F  S  V  *  Y  F  L  D  A  Q  L  C  A  L  F  P  R  F  N  L  Y  I  G  W  L  K  G  Q  I  S  L  N  I  C  V  P  F  H  F  L  S  V  Y  V  V  *  E  L  D  Y  K  *  V  L  H  H  Y  S  T  L </second_frame>
            <third_frame>   N  L  K  N  F  P  *  I  P  L  K  N  N  H  F  Y  I  H  F  S  T  Y  F  I  I  *  I  H  *  L  L  Y  L  L  A  F  A  C  K  K  P  L  Y  T  L  K  N  T  I  K  I  Q  F  C  I  A  I  I  T  S  F  L  F  *  S  I  Q  E  E  G  *  S  V  L  F  T  S  L  F  F  S  N  T  L  C  S  R  L  F  L  *  D  G  F  Y  I  T  L  I  S  I  S  T  P  F  G  E  T  S  V  Y  S  F  E  Q  V  S  K  S  V  F  F  N  T  L  F  K  I  H  S  K  L  *  S  F  F  E  K  I  K  D  G  G  C  F  S  N  N  C  C  *  E  I  K  *  E  V  S  W  *  G  *  G  V  C  G  G  N  E  V  C  G  Y  E  V  A  Y  *  G  P  G  *  G  R  G  K  R  A  C  R  S  A  F  G  Q  V  G  A  *  C  *  R  V  L  E  V  L  G  G  *  Q  I  G  L  *  Y  F  G  K  N  C  G  K  G  S  F  S  *  V :   C  *  V  Q  E  Y  R  I  R  K  V  *  G  S  S  K  G  F  G  M  V  *  A  A  G  S  C  H  P  G  T  I  N  S  W  C  H  L  C  *  L  L  R  G  A  I  R  K  G  S  S  S  I  Y  L  P  F  L  Q  H  L  L  C  S  F  S  W  R  P  H  D  R  E  K   : G  S  *  K  G  T  *  Q  E  R  A  G  I  L  Q  M  G  R  R  S  F  S  A  A  A  E  C  *  G  *  A  E  Q  S  C  R   : K  L  D  *  R  G  E  E  S  L  S  G  R  D  R  E  V  I  Q  V  L  R  G  H  S  P  F  D  I  F  L  M  H  N  F  A  L  C  F  L  V  L  T  C  T  L  D  G  *  K  V  K  F  L  *  I  F  V  F  L  F  T  F  F  L  S  M  L  C  K  N  L  I  I  N  K  C  Y  I  I  I  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33282" stop="33801"/>
                    <exon start="34927" stop="35150"/>
                    <exon start="36019" stop="36126"/>
                    <exon start="36255" stop="36347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSLLSCSNPFKKKVNLSFSLLFFFQIPFVQDSSFKMASISPLSQSQPLLEKPQFTVLNKSQNQFFSIPFSRFTQSCNLSLKKSRMVVVSATTAAEKSNKRYPGEAKGFVEEMRFVAMKLHTKDQAKEGEKEPVDQPLAKWEPSVEGYLKFLVDSKLVYDTLERIVEKAPFPEYAEFRNTGLERSEVLAKDLEWFRQQGHAIPEPSTPGVTYASYLEELSEKDPQAFICHFYNTYFAHSAGGRMIGKKVAEKVLDKKELEFYKWDGDLSQLLQNVRDKLNKVAENWTREEKNHCLEETEKSFKFSGAILRLIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="50829" PGL_stop="47684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50829" e_stop="50674"/>
            <exon e_start="49494" e_stop="49394"/>
            <exon e_start="48956" e_stop="48893"/>
            <exon e_start="48173" e_stop="48077"/>
            <exon e_start="47963" e_stop="47684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50829" e_stop="50674" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="50673" i_stop="49495" i_length="1179"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49494" e_stop="49394" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49393" i_stop="48957" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48956" e_stop="48893" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.868" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48892" i_stop="48174" i_length="719"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48173" e_stop="48077" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48076" i_stop="47964" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47963" e_stop="47684" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50829" stop="50674"/>
              <exon start="49494" stop="49394"/>
              <exon start="48956" stop="48893"/>
              <exon start="48173" stop="48077"/>
              <exon start="47963" stop="47684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAACCTGAGGTTACATGTTTTTGTTAAAACCAACACAATTTTGGCAAATTTTCTCTGATTAAATTCAAAAAAAAATAAGTGAAATTCAACTGTTTTAATGGCAAATTCTCTGTGTTTCACCCCTATAGCTTCATTGAACTCTTTCAATAAACCAG : GTTTAATTAATCGAAATGGGAATTGCGCTGGAAGAAAGATTCAATTGATCAAAGATGTAACCTTCAACTCCAAGAGTAACTTAAGAGTCGTAGAAGTGAAG : GCCGCTGACAGTGATAAAGAAACAAAAGTAAAGAGCATAGTCTGTCAAAAGTGTGATGGAAATG : GTGCAGTGGCGTGCTCACAATGTAAAGGCGCTGGGGTTAACTCCGTCGATCATTTCAACGGACGGTTTAAAGCCGGTGGACTATGTTGGCTGTGCAG : AGGTAAGAAAGATATATTGTGTGGTGATTGCAATGGTGCTGGATTTCTTGGTGGATTTATGAGTACGTTCGATGAGTAGACTTCAGATGCACTGGTCTCGAGTAGACTCGGAGGCAGGTAGAGGCAGGTTCAGAGGCAGATCCGGAATTTAAACTTGATGAGTTCAGTTTCTATAATTCTCCGTATTGAAGTCATTGTACTTGTGAAATTATGATTTCATAATTTGATATTTGTTCAAACTTTACCTTCCCTGTCACATATATTTATTCATGATTCGTGT</gDNA_template>
            <first_frame> V  T  *  G  Y  M  F  L  L  K  P  T  Q  F  W  Q  I  F  S  D  *  I  Q  K  K  I  S  E  I  Q  L  F  *  W  Q  I  L  C  V  S  P  L  *  L  H  *  T  L  S  I  N  Q  :  V  *  L  I  E  M  G  I  A  L  E  E  R  F  N  *  S  K  M  *  P  S  T  P  R  V  T  *  E  S  *  K  *  R :   P  L  T  V  I  K  K  Q  K  *  R  A  *  S  V  K  S  V  M  E  M  :  V  Q  W  R  A  H  N  V  K  A  L  G  L  T  P  S  I  I  S  T  D  G  L  K  P  V  D  Y  V  G  C  A   : E  V  R  K  I  Y  C  V  V  I  A  M  V  L  D  F  L  V  D  L  *  V  R  S  M  S  R  L  Q  M  H  W  S  R  V  D  S  E  A  G  R  G  R  F  R  G  R  S  G  I  *  T  *  *  V  Q  F  L  *  F  S  V  L  K  S  L  Y  L  *  N  Y  D  F  I  I  *  Y  L  F  K  L  Y  L  P  C  H  I  Y  L  F  M  I  R   </first_frame>
            <second_frame>  *  P  E  V  T  C  F  C  *  N  Q  H  N  F  G  K  F  S  L  I  K  F  K  K  K  *  V  K  F  N  C  F  N  G  K  F  S  V  F  H  P  Y  S  F  I  E  L  F  Q  *  T  R :   F  N  *  S  K  W  E  L  R  W  K  K  D  S  I  D  Q  R  C  N  L  Q  L  Q  E  *  L  K  S  R  R  S  E   : G  R  *  Q  *  *  R  N  K  S  K  E  H  S  L  S  K  V  *  W  K  W :   C  S  G  V  L  T  M  *  R  R  W  G  *  L  R  R  S  F  Q  R  T  V  *  S  R  W  T  M  L  A  V  Q  :  R  *  E  R  Y  I  V  W  *  L  Q  W  C  W  I  S  W  W  I  Y  E  Y  V  R  *  V  D  F  R  C  T  G  L  E  *  T  R  R  Q  V  E  A  G  S  E  A  D  P  E  F  K  L  D  E  F  S  F  Y  N  S  P  Y  *  S  H  C  T  C  E  I  M  I  S  *  F  D  I  C  S  N  F  T  F  P  V  T  Y  I  Y  S  *  F  V  </second_frame>
            <third_frame>   N  L  R  L  H  V  F  V  K  T  N  T  I  L  A  N  F  L  *  L  N  S  K  K  N  K  *  N  S  T  V  L  M  A  N  S  L  C  F  T  P  I  A  S  L  N  S  F  N  K  P   : G  L  I  N  R  N  G  N  C  A  G  R  K  I  Q  L  I  K  D  V  T  F  N  S  K  S  N  L  R  V  V  E  V  K  :  A  A  D  S  D  K  E  T  K  V  K  S  I  V  C  Q  K  C  D  G  N   : G  A  V  A  C  S  Q  C  K  G  A  G  V  N  S  V  D  H  F  N  G  R  F  K  A  G  G  L  C  W  L  C  R :   G  K  K  D  I  L  C  G  D  C  N  G  A  G  F  L  G  G  F  M  S  T  F  D  E  *  T  S  D  A  L  V  S  S  R  L  G  G  R  *  R  Q  V  Q  R  Q  I  R  N  L  N  L  M  S  S  V  S  I  I  L  R  I  E  V  I  V  L  V  K  L  *  F  H  N  L  I  F  V  Q  T  L  P  S  L  S  H  I  F  I  H  D  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50746" stop="50674"/>
                    <exon start="49494" stop="49394"/>
                    <exon start="48956" stop="48893"/>
                    <exon start="48173" stop="48077"/>
                    <exon start="47963" stop="47885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTVLMANSLCFTPIASLNSFNKPGLINRNGNCAGRKIQLIKDVTFNSKSNLRVVEVKAADSDKETKVKSIVCQKCDGNGAVACSQCKGAGVNSVDHFNGRFKAGGLCWLCRGKKDILCGDCNGAGFLGGFMSTFDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="57503" PGL_stop="55417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57503" e_stop="56836"/>
            <exon e_start="56023" e_stop="55417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="57503" e_stop="56836" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56835" i_stop="56024" i_length="812"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56023" e_stop="55417" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57503" stop="56930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56943" stop="56836"/>
              <exon start="56023" stop="55417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTTCACTTCAATTCAAGATCCAATCTTTTTTCTCAAATTTCTTCAAAAAAAAAGTGAGTTTTCCATGGCAAATTCATGGAGAAGAAACCAACAAATCAAGATCTTCACCCCCAAGAATCTCCTTCTCTTTTTCTTCACTTCTCTTCTCCTCCTTATTTTCCTCTATCTCACATCACAAACCCAACCCCACAATCCAAAACCCCTCAAATCTATTAAAAATCCAATCTTTAATCTCCCCATAAAGCCATTTGATTGTTACAATTCACCTCAAGCTTACCCTGTTATAGCTAGTGTAGTTGAAGGTGTGAAATACCCTTTTCTTTTTTCACTTTCAGATTTTGGGAATTTGCCTGAAAAACCTCATAAGAATATTCAGAGGGTACTTAAAGGAAAACCCTTTAGAAAGCCTGATATATCTGTGACTCTGCAAGAATTGTTGGAAAAGATGAAGGGTAAAAATGGGATTTTTTTGGATGTTGGAGCTAATGTAGGAATGGCTACTTTTGCTGCTGCTGTAATGGGGTTTAAAGTTTTGGCCTTTGAACCTGTTTTTGAGAATTTGCAGAAAATTTGTGAAGGTATTTACTTTAATAGAGTTGGAGAGTTGGTTGAGGTTTATGAAGCAGCTGTCTCTGATCATAATGGGAATATTACCTTTCACAAG : TTGGTTGGTAGACTTGACAATAGTGCAGTATCTGCCACCGGTGCCAAGTTGGCTTTTAAGTCAAATGAAGAGATTGAAGTTCAAGTAAAAACTATTCCTCTTGATGAGGTTATCCAAGAAACGGAGCGTGTACTACTGATAAAGATAGATGTTCAAGGTTGGGAGTATCATGTACTTAAGGGAGCATCAAAGTTATTGTCAAGGAAGAAAGGTGAAGCACCTTACCTGATCTACGAGGAAGATGAGCGATTGTTGCAAGCCAGCAATAGCAGTGCTAAGGAAATCCGGGAGTTTCTACAGAGTGTGGGTTACAACCATTGCACTCAACATGGTACAGATGCACACTGCACAAAAACAGATTGAGAAGGTTATCATCTACAAATAATCTTCTGCTACAACTCTGGAAGGAGCATCAATTCTTAAAAATTTTAAAATATTTGCTATACACCGATTTAAACAATCAACTATCATGTTTTTTTGGGTGCTATAAGCTTAGAATGATTGGTATAGAACAAAACCTGATGCGACAGTTGTTCAAAGTCGAGCTCTACTTTTTTCAGTTCGTATGAATTGGAAGGCTGACTGATACCATGTTGAGGGGATTATG</gDNA_template>
            <first_frame> K  V  S  L  Q  F  K  I  Q  S  F  F  S  N  F  F  K  K  K  V  S  F  P  W  Q  I  H  G  E  E  T  N  K  S  R  S  S  P  P  R  I  S  F  S  F  S  S  L  L  F  S  S  L  F  S  S  I  S  H  H  K  P  N  P  T  I  Q  N  P  S  N  L  L  K  I  Q  S  L  I  S  P  *  S  H  L  I  V  T  I  H  L  K  L  T  L  L  *  L  V  *  L  K  V  *  N  T  L  F  F  F  H  F  Q  I  L  G  I  C  L  K  N  L  I  R  I  F  R  G  Y  L  K  E  N  P  L  E  S  L  I  Y  L  *  L  C  K  N  C  W  K  R  *  R  V  K  M  G  F  F  W  M  L  E  L  M  *  E  W  L  L  L  L  L  L  *  W  G  L  K  F  W  P  L  N  L  F  L  R  I  C  R  K  F  V  K  V  F  T  L  I  E  L  E  S  W  L  R  F  M  K  Q  L  S  L  I  I  M  G  I  L  P  F  T  S :   W  L  V  D  L  T  I  V  Q  Y  L  P  P  V  P  S  W  L  L  S  Q  M  K  R  L  K  F  K  *  K  L  F  L  L  M  R  L  S  K  K  R  S  V  Y  Y  *  *  R  *  M  F  K  V  G  S  I  M  Y  L  R  E  H  Q  S  Y  C  Q  G  R  K  V  K  H  L  T  *  S  T  R  K  M  S  D  C  C  K  P  A  I  A  V  L  R  K  S  G  S  F  Y  R  V  W  V  T  T  I  A  L  N  M  V  Q  M  H  T  A  Q  K  Q  I  E  K  V  I  I  Y  K  *  S  S  A  T  T  L  E  G  A  S  I  L  K  N  F  K  I  F  A  I  H  R  F  K  Q  S  T  I  M  F  F  W  V  L  *  A  *  N  D  W  Y  R  T  K  P  D  A  T  V  V  Q  S  R  A  L  L  F  S  V  R  M  N  W  K  A  D  *  Y  H  V  E  G  I  M </first_frame>
            <second_frame>  K  F  H  F  N  S  R  S  N  L  F  S  Q  I  S  S  K  K  K  *  V  F  H  G  K  F  M  E  K  K  P  T  N  Q  D  L  H  P  Q  E  S  P  S  L  F  L  H  F  S  S  P  P  Y  F  P  L  S  H  I  T  N  P  T  P  Q  S  K  T  P  Q  I  Y  *  K  S  N  L  *  S  P  H  K  A  I  *  L  L  Q  F  T  S  S  L  P  C  Y  S  *  C  S  *  R  C  E  I  P  F  S  F  F  T  F  R  F  W  E  F  A  *  K  T  S  *  E  Y  S  E  G  T  *  R  K  T  L  *  K  A  *  Y  I  C  D  S  A  R  I  V  G  K  D  E  G  *  K  W  D  F  F  G  C  W  S  *  C  R  N  G  Y  F  C  C  C  C  N  G  V  *  S  F  G  L  *  T  C  F  *  E  F  A  E  N  L  *  R  Y  L  L  *  *  S  W  R  V  G  *  G  L  *  S  S  C  L  *  S  *  W  E  Y  Y  L  S  Q   : V  G  W  *  T  *  Q  *  C  S  I  C  H  R  C  Q  V  G  F  *  V  K  *  R  D  *  S  S  S  K  N  Y  S  S  *  *  G  Y  P  R  N  G  A  C  T  T  D  K  D  R  C  S  R  L  G  V  S  C  T  *  G  S  I  K  V  I  V  K  E  E  R  *  S  T  L  P  D  L  R  G  R  *  A  I  V  A  S  Q  Q  *  Q  C  *  G  N  P  G  V  S  T  E  C  G  L  Q  P  L  H  S  T  W  Y  R  C  T  L  H  K  N  R  L  R  R  L  S  S  T  N  N  L  L  L  Q  L  W  K  E  H  Q  F  L  K  I  L  K  Y  L  L  Y  T  D  L  N  N  Q  L  S  C  F  F  G  C  Y  K  L  R  M  I  G  I  E  Q  N  L  M  R  Q  L  F  K  V  E  L  Y  F  F  Q  F  V  *  I  G  R  L  T  D  T  M  L  R  G  L   </second_frame>
            <third_frame>   S  F  T  S  I  Q  D  P  I  F  F  L  K  F  L  Q  K  K  S  E  F  S  M  A  N  S  W  R  R  N  Q  Q  I  K  I  F  T  P  K  N  L  L  L  F  F  F  T  S  L  L  L  L  I  F  L  Y  L  T  S  Q  T  Q  P  H  N  P  K  P  L  K  S  I  K  N  P  I  F  N  L  P  I  K  P  F  D  C  Y  N  S  P  Q  A  Y  P  V  I  A  S  V  V  E  G  V  K  Y  P  F  L  F  S  L  S  D  F  G  N  L  P  E  K  P  H  K  N  I  Q  R  V  L  K  G  K  P  F  R  K  P  D  I  S  V  T  L  Q  E  L  L  E  K  M  K  G  K  N  G  I  F  L  D  V  G  A  N  V  G  M  A  T  F  A  A  A  V  M  G  F  K  V  L  A  F  E  P  V  F  E  N  L  Q  K  I  C  E  G  I  Y  F  N  R  V  G  E  L  V  E  V  Y  E  A  A  V  S  D  H  N  G  N  I  T  F  H  K  :  L  V  G  R  L  D  N  S  A  V  S  A  T  G  A  K  L  A  F  K  S  N  E  E  I  E  V  Q  V  K  T  I  P  L  D  E  V  I  Q  E  T  E  R  V  L  L  I  K  I  D  V  Q  G  W  E  Y  H  V  L  K  G  A  S  K  L  L  S  R  K  K  G  E  A  P  Y  L  I  Y  E  E  D  E  R  L  L  Q  A  S  N  S  S  A  K  E  I  R  E  F  L  Q  S  V  G  Y  N  H  C  T  Q  H  G  T  D  A  H  C  T  K  T  D  *  E  G  Y  H  L  Q  I  I  F  C  Y  N  S  G  R  S  I  N  S  *  K  F  *  N  I  C  Y  T  P  I  *  T  I  N  Y  H  V  F  L  G  A  I  S  L  E  *  L  V  *  N  K  T  *  C  D  S  C  S  K  S  S  S  T  F  F  S  S  Y  E  L  E  G  *  L  I  P  C  *  G  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57501" stop="56836"/>
                    <exon start="56023" stop="55661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTSIQDPIFFLKFLQKKSEFSMANSWRRNQQIKIFTPKNLLLFFFTSLLLLIFLYLTSQTQPHNPKPLKSIKNPIFNLPIKPFDCYNSPQAYPVIASVVEGVKYPFLFSLSDFGNLPEKPHKNIQRVLKGKPFRKPDISVTLQELLEKMKGKNGIFLDVGANVGMATFAAAVMGFKVLAFEPVFENLQKICEGIYFNRVGELVEVYEAAVSDHNGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIEVQVKTIPLDEVIQETERVLLIKIDVQGWEYHVLKGASKLLSRKKGEAPYLIYEEDERLLQASNSSAKEIREFLQSVGYNHCTQHGTDAHCTKTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="59744" PGL_stop="62016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59744" e_stop="59803"/>
            <exon e_start="60103" e_stop="60240"/>
            <exon e_start="61346" e_stop="61849"/>
            <exon e_start="61990" e_stop="62016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.624" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.986"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="59744" e_stop="59803" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.624">
            <gDNA_intron_boundary i_start="59804" i_stop="60102" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60103" e_stop="60240" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60241" i_stop="61345" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="61346" e_stop="61849" e_length="504"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61850" i_stop="61989" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="0.889">
            <gDNA_exon_boundary e_start="61990" e_stop="62016" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59744" stop="59803"/>
              <exon start="60103" stop="60240"/>
              <exon start="61346" stop="61849"/>
              <exon start="61990" stop="62016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATATGGCACAGATAATTAACAATTTCCAATGTGTTCCTCTATCTCTTCATATACTATG : AAAAATTTGGTTTTCTTGTTCATTTTAATTGGCTTGTCAAATTCAAGAATATATAGTGCAAGTATATATGGATATCCAGGAAGTTTTAATGTCCTGGATTATGGAGCTGCTGCTGATGGCATAACTGATGATTCTCAA : GCATTACTTAATACATGGAATGATGCATGTTCATCCTCAGCTGGATATCCTCAAGTGATTATTCCTCCAAATATGATATTTTTACTTAGCCCTATGACACTCATAGGCCCCTGCAATTCACAGAACATCTATTTTGTGGTATGAAAAAAAAACAAACATAAACCACTCTTTAATATTCCTAACAGTTTAATTTCTATACACTGACGGTTAAAAATAACCAGATTACTTAAAATAGACAACTCACTACAACAAACTAGTCAGTGTATATAAGTTAAATCGTATTTGAAAAATGTTTGCCCAAGTGAACTATGTGAATTTTCGTGGCTCTTGTAGGTGTCCGGTAGTCTTGTTTCACCGAGCTCACCAAGTGTATGGACCGGGCAAGACTCGAGTCAATGGCTAGCTTTCAGAAATGTTAGCGGTCTAGTTGTTGGTGGCTCAGGAACCATTGATGGTCAAGGCAAAAAATGGTGGGATCAATCATGTAGATACCACCCTGAACTG : GATGGATGCACAAAATTAGCTCCAACT</gDNA_template>
            <first_frame> G  Y  G  T  D  N  *  Q  F  P  M  C  S  S  I  S  S  Y  T  M  :  K  N  L  V  F  L  F  I  L  I  G  L  S  N  S  R  I  Y  S  A  S  I  Y  G  Y  P  G  S  F  N  V  L  D  Y  G  A  A  A  D  G  I  T  D  D  S  Q  :  A  L  L  N  T  W  N  D  A  C  S  S  S  A  G  Y  P  Q  V  I  I  P  P  N  M  I  F  L  L  S  P  M  T  L  I  G  P  C  N  S  Q  N  I  Y  F  V  V  *  K  K  N  K  H  K  P  L  F  N  I  P  N  S  L  I  S  I  H  *  R  L  K  I  T  R  L  L  K  I  D  N  S  L  Q  Q  T  S  Q  C  I  *  V  K  S  Y  L  K  N  V  C  P  S  E  L  C  E  F  S  W  L  L  *  V  S  G  S  L  V  S  P  S  S  P  S  V  W  T  G  Q  D  S  S  Q  W  L  A  F  R  N  V  S  G  L  V  V  G  G  S  G  T  I  D  G  Q  G  K  K  W  W  D  Q  S  C  R  Y  H  P  E  L  :  D  G  C  T  K  L  A  P  T </first_frame>
            <second_frame>  D  M  A  Q  I  I  N  N  F  Q  C  V  P  L  S  L  H  I  L  * :   K  I  W  F  S  C  S  F  *  L  A  C  Q  I  Q  E  Y  I  V  Q  V  Y  M  D  I  Q  E  V  L  M  S  W  I  M  E  L  L  L  M  A  *  L  M  I  L  K :   H  Y  L  I  H  G  M  M  H  V  H  P  Q  L  D  I  L  K  *  L  F  L  Q  I  *  Y  F  Y  L  A  L  *  H  S  *  A  P  A  I  H  R  T  S  I  L  W  Y  E  K  K  T  N  I  N  H  S  L  I  F  L  T  V  *  F  L  Y  T  D  G  *  K  *  P  D  Y  L  K  *  T  T  H  Y  N  K  L  V  S  V  Y  K  L  N  R  I  *  K  M  F  A  Q  V  N  Y  V  N  F  R  G  S  C  R  C  P  V  V  L  F  H  R  A  H  Q  V  Y  G  P  G  K  T  R  V  N  G  *  L  S  E  M  L  A  V  *  L  L  V  A  Q  E  P  L  M  V  K  A  K  N  G  G  I  N  H  V  D  T  T  L  N  W :   M  D  A  Q  N  *  L  Q   </second_frame>
            <third_frame>   I  W  H  R  *  L  T  I  S  N  V  F  L  Y  L  F  I  Y  Y   : E  K  F  G  F  L  V  H  F  N  W  L  V  K  F  K  N  I  *  C  K  Y  I  W  I  S  R  K  F  *  C  P  G  L  W  S  C  C  *  W  H  N  *  *  F  S   : S  I  T  *  Y  M  E  *  C  M  F  I  L  S  W  I  S  S  S  D  Y  S  S  K  Y  D  I  F  T  *  P  Y  D  T  H  R  P  L  Q  F  T  E  H  L  F  C  G  M  K  K  K  Q  T  *  T  T  L  *  Y  S  *  Q  F  N  F  Y  T  L  T  V  K  N  N  Q  I  T  *  N  R  Q  L  T  T  T  N  *  S  V  Y  I  S  *  I  V  F  E  K  C  L  P  K  *  T  M  *  I  F  V  A  L  V  G  V  R  *  S  C  F  T  E  L  T  K  C  M  D  R  A  R  L  E  S  M  A  S  F  Q  K  C  *  R  S  S  C  W  W  L  R  N  H  *  W  S  R  Q  K  M  V  G  S  I  M  *  I  P  P  *  T   : G  W  M  H  K  I  S  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59765" stop="59803"/>
                    <exon start="60103" stop="60240"/>
                    <exon start="61346" stop="61489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFPMCSSISSYTMKNLVFLFILIGLSNSRIYSASIYGYPGSFNVLDYGAAADGITDDSQALLNTWNDACSSSAGYPQVIIPPNMIFLLSPMTLIGPCNSQNIYFVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0223G07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61679" stop="61849"/>
                    <exon start="61990" stop="62016"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGSLVSPSSPSVWTGQDSSQWLAFRNVSGLVVGGSGTIDGQGKKWWDQSCRYHPELDGCTKLAPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 44 chains have been computed
$ 
$ memory statistics:
$ 35344 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2209 bytes was the average size of a spliced alignment
$ 17912 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1628 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:08:53
-->
