<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:26:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567745" ref_strand="+" ref_description="SGN-U567745 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157335984|emb|CAO61814.1| (e_value=4e-39) unnamed; (*ATH) AT1G77710.1 (e_value=1e-40) | Symbol: None | expressed protein, similar to hypothetical protein GB:P34661 (Caenorhabditis elegans) | chr1:29211577-29212943 FORWARD | Aliases: T32E8.4, T32E8_4; (*SWP) sp|Q9CA23|UFM1_ARATH (e_value=1e-39) Probable ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710; ">
      <seq>ggcttattttctacccccataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1346" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1645" g_stop="1803" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="290" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="520" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U567745" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1645" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>GGCTTATTTTCTACCCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U596024" ref_strand="+" ref_description="SGN-U596024 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147852857|emb|CAN81277.1| (e_value=7e-65) hypothetical; (*ATH) AT2G35600.1 (e_value=4e-54) | Symbol: None | expressed protein | chr2:14948171-14952407 REVERSE | Aliases: T32F12.2, T32F12_2; ">
      <seq>gaaagggcatggaccatatccatatccttattttgatgcaatctctaagggagttttatataattaccaaacaggaagttcaaattctactccagcttgggattttacaagtactggtcatttccaaacaccaactagaactgatcctagattaagtgatgtgatgttggaagatgaagaggaggctaaagagtggacagcacaagtggagcctggaattcagattacttttgattctcttcctcatggtggaaatgatcttaaaagaatcagatttagtcgggacgtgttcaacaaatggcaagctcaaagatggtggggtgaaaattatgacagaattatggagctttacaatgttcagagatttaataagtatgctcttcacacaccctcacagtctgaggatgggagagattcaaattattcgtcaaggccgggatctgcaagggatttccaacaatacaatgctggattaggtgctcatgtccctagtttcccaaagggcagtggggtatcaagaacgacaacctcctctagagacgaagcttcagtttctgtaagtaatgctagtgatatggagtcagaatggatagaaccagatgaacctggagtgtgtataactatcacaccattacctgatggaactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6554" stop="5116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6254" g_stop="5976" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5975" i_stop="5865" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5864" g_stop="5735" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="409" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5734" i_stop="5657" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5656" g_stop="5416" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="650" r_length="241" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-U596024" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6254" e_stop="5976"/>
          <exon e_start="5864" e_stop="5735"/>
          <exon e_start="5656" e_stop="5416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAGGTATCTATTCATCATCTCCTTTCATTTTACTCCCCGCGTTTCAATTTTATTTTGTCTAGTTTTGACTTGATACGTCGTTTAAGAAAGTAGATTTGATTTGTTATTTTGAAGTCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGGGTAAGACTTTCTTTGTCTGGTTTTGATTTGACACAGAGTTTAAGAAAGTAAATGAAATTTAAGGTCTTTTTTCTGCAGAGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGTGTATAACTATCAGACAATTAGCTGATGGAACTAGAG</genome_strand>
        <mrna_strand>GAAAGGGCATGGACCATATCCATATCCTTATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG...............................................................................................................TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG..............................................................................AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACCAGATGAACCTGGAGTGTGTATAACTATCACACCATTACCTGATGGAACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565940" ref_strand="+" ref_description="SGN-U565940 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|42572949|ref|NP_974571.1| (e_value=9e-40) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G19100.1 (e_value=7e-42) | Symbol: None | expressed protein | chr4:10453464-10454370 FORWARD | Aliases: None; ">
      <seq>caccaccaaccaattaaaacaatgtgaagagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaaaaattgtattatctcctttaaatccactaatatcaaaaaacaaacactttcaaattcccaaatccaaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaaaaaaattaccaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaatacgacgataacgatgataatgatgatgatgatgaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaaggggattttcagttggaattcctttgtttatgggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtacctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttattgggagttagttatgggatagtttcatctagttgggatccaatgagagaagggtcaactttgggttggaatgaagctaagaagaattggcctgttttttggcaatcaattagtggaggtggatcaagaaaaaagtattaggagttttttggactttgcttatgtatcttttatgaatataataatgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18014" stop="16698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17714" g_stop="16998" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-U565940" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17714" e_stop="16998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTT</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAAAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAAAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAAGGGGATTTTCAGTTGGAATTCCTTTGTTTATGGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587404" ref_strand="+" ref_description="SGN-U587404 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|42572949|ref|NP_974571.1| (e_value=1e-15) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G19100.1 (e_value=1e-17) | Symbol: None | expressed protein | chr4:10453464-10454370 FORWARD | Aliases: None; ">
      <seq>caccaccaaccaattaaaacaatgtgaaaagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaagaattgtattatctcctttaaatccgctaatatcaaaaaacaaacactttcaaattcccaaatccgaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaacttcccctaagaaaattaccaaaaaatccaagaaaataccaacactagaaaatgaagatccatacgacgataacgatgattatgatgatgatgatgaaccagaaagatgacggataccagagatagcaactaatacaatgataagtagaatgggattttcagttggaattcccttggttattgggttattgcggtttccttttttttattatcgtaacggtggcttaaaaattgatgtacctacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18014" stop="16932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17714" g_stop="17232" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-U587404" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17714" e_stop="17232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGG</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAAAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCGCTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCGAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGAACTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAACACTAGAAAATGAAGATCCATACGACGATAACGATGATTATGATGATGATGATGAACCAGAAAGATGACGGATACCAGAGATAGCAACTAATACAATGATAAGTAGAATGGGATTTTCAGTTGGAATTCCCTTGGTTATTGGGTTATTGCGGTTTCCTTTTTTTTATTATCGTAACGGTGGCTTAAAAATTGATGTACCTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570281" ref_strand="+" ref_description="SGN-U570281 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157349586|emb|CAO38724.1| (e_value=2e-32) unnamed; (*ATH) AT4G19070.1 (e_value=8e-29) | Symbol: None | cadmium-responsive protein / cadmium induced protein (AS8), identical to cadmium induced protein AS8 SP:P42735 from (Arabidopsis thaliana) | chr4:10446351-10448201 REVERSE | Aliases: T18B16.3; (*SWP) sp|P42735|CDI8_ARATH (e_value=7e-28) Cadmium-induced protein AS8 OS=Arabidopsis thaliana GN=At4g19070; ">
      <seq>actactatattaacaaaatttcaatttcaaataatttttccttcgagcttcgcgaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaacaaggcatcaatagcttatttcatccttgcaaaggttcaaaggattaagcaacatgttgaggagcacaatcccagaagggttaatatacattgcacacttcacagcattggccttagtttttttgccttcccacagatagtagggagcatataggtagaagaaaaaagagcatttacagttgcagttgttaacatgctttcatttcttttagtttggtaaacattgtttgaatgaaagtgagaatttgaattaatacggaaaagggtcaaaaatgtctctgaactatcgcgaaaggtcataatatacccttcgtctttgtccatctattatgctaataatacttttcggatttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18021" stop="22165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18321" g_stop="18403" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19916" g_stop="20162" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="330" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20320" g_stop="20592" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="603" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20593" i_stop="21541" i_length="949">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21542" g_stop="21865" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="927" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U570281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18321" e_stop="18403"/>
          <exon e_start="19916" e_stop="20162"/>
          <exon e_start="20320" e_stop="20592"/>
          <exon e_start="21542" e_stop="21865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAGGTATGCTACAGAGTGCTCACAAATGGAAGTAGTACTGTATTACAGTTAAACCATGATTAGACTTTTCATGCTACTTTGTTCTGATTCTTTAAACAGTGTAATATCGGTGTCATCAAATGTGATTATTGACGGGGAAGGAACTTGATCTACCCTTGGTCAAAATGGTTATTGGTTCGGATTGGTGTGCAATTTGCAACTAAGATTGCTTTTTCATTTTACAATCATATCAACCACTTTTTTCCAACATTGACCATCTCCGACTGTTTTATGTTACTATGATTGAAGAAGTACTCACCAATTATATTCGTTTTTCATGGAGCACAAAGTCAATTCAAGACGACATTTTGGTGATAAAAGTGGGAAGAAGTAAAGAGTGTGTGTTGTGTGGGGGTAGATGGCGGATTAGATAGGACGAGAAACAGGACATAACTCCTACTTTCCTATGTATGAATCTTTTATGTCAAGTTTGTTACATTTATTAGGTGTAATCTGAAGCTAGATAATGATATCGATGTTTTTGTCAACGTTTTAGATTGAACATGAGCACTGTTTCCTTCATGACTTGTTCGGGGATCGTTACTGTTTCCTTCTGGTTCACTGAAACTGTGTTATGTATAGTCTTATCTTGAATCTGTGTTGAACTGTTAAATGTTGTTGAATAACAAAGCCGGTACTCTATCTGCAATCATTTGTTCCCTTTACTGATACTTCCACGCTAATATACAACGCGTTGTCATCTGTGTAGTCTATCGTGCTGTCATTTATAACTGTTCTACAACCATGACATTGCCAGTGTTGAGTACCTCATATGGATACTTGCACACACTCATATATCTGATATATACCATAAATGAATCCGCGTAACGTACATGTATTCAGTATCCACCTCTTACTGCAATTCAGAGAACACAAATAACTTCTCACGTTGTCGTGTATCGATTTCTTGCAGGTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGT</genome_strand>
        <mrna_strand>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U563630" ref_strand="+" ref_description="SGN-U563630 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|109289919|gb|AAP45172.2| (e_value=7e-66) hypothetical; (*ATH) AT3G13960.1 (e_value=5e-41) | Symbol: None | expressed protein, identical to transcription activator GRL5 (Arabidopsis thaliana) GI:21539888 (unpublished); supporting cDNA gi:21539887:gb:AY102638.1: | chr3:4608390-4610406 FORWARD | Aliases: MDC16.8; ">
      <seq>gacctttattcccatgtcccaatgcttccttttagcttaatctctcaattaactcatccaaatttgtactaaatcaacctcaaaaatctccatttttaagctaatggaggtactaatcaaacttaatcaacccccttaatgataattatccaaaaccctagatctgtccccttattaggtaactccaacaacttttgctctctatatctcatacactgaaagtctgaaacacctttatattaactccagtggtgataataatttctgggtacagctttttttggtgaattgtgaagtgggtatttggggatttttgttttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcactactgggagcagcaaaacaagcggcaatttccaacgtaacagcagtgaaagcttccagaacacgccactatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30491" stop="27712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30192" g_stop="29673" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28309" g_stop="28012" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="818" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-U563630" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30192" e_stop="29673"/>
          <exon e_start="28309" e_stop="28012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTTATTCCCATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</genome_strand>
        <mrna_strand>GACCTTTATTCCCATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580589" ref_strand="+" ref_description="SGN-U580589 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|192910878|gb|ACF06547.1| (e_value=1e-119) Mob1; (*ATH) AT5G45550.1 (e_value=4e-121) | Symbol: None | mob1/phocein family protein, contains Pfam profile: PF03637 Mob1/phocein family | chr5:18479444-18482248 FORWARD | Aliases: MFC19.22, MFC19_22; (*SWP) sp|Q54XJ0|MOB1A_DICDI (e_value=1e-84) Mps one binder kinase activator-like 1 homolog A OS=Dictyostelium discoideum GN=mobA; ">
      <seq>gcgaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32541" stop="38987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32840" g_stop="32914" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="124" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="233" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="327" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="461" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="625" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38471" g_stop="38687" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="842" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U580589" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32840" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</genome_strand>
        <mrna_strand>GCGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U598319" ref_strand="+" ref_description="SGN-U598319 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agctcgtttttttctgctcaattttgttcagaattgtgaagaagaagattcgaatttgatagattcatagtgtttttttggctgcgatcatctttttgggattcaaaatcaactttttgttgaatttttttaattatttttgtttttggtggagtaattgtttgcaaaaaaccacagatttcgccgttttttgtagagatttttcaataggtttcagtgaagaactttttcaaatttgaattttgaatttgggttttgctgattagttgaaaagatctgattttttttttgaaaatggatagagttgcatanngttcatcgaactancggaagtgaggattcaaagtctaagcttccggatttctggcaattttttttttganttttttgttttttaggggttnat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="40057" stop="41060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40356" g_stop="40760" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U598319" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40356" e_stop="40760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCGTTTTTTTCTGCTCAATTTTGTTCAGAATTGTGCAGAAGAAGATTCGAATTTGATAGATTCATAGTGTTTTTTTGGCTGCGATCATCTTTTTGGTATTCAAAATCAACTTTTTGTTGAATTTTTTTAATTATTTTTGTTTTTGGTGGAGTAATTGTTTGCAAAAAACCACAGATTTCGCCGTTTTTTGTAGAGATTTTTCAATAGGTTTCAGTGAAGAACTTTTTCAAATTTGAATTTTGAATTTGGGTTTTGCTGATTAGTTGAAAAGATCTGATTTTTTTTTTGAAGATGGATAGAGTTGCATAGTGTTCATCGAACTAGCGGAAGTGAGGATTCAAAGTCTAAGCTTCCGGATTTCTGGCAA-TTTTTTTTTGAGTTTTTTGTTTTTTAGGGGTTTAT</genome_strand>
        <mrna_strand>AGCTCGTTTTTTTCTGCTCAATTTTGTTCAGAATTGTGAAGAAGAAGATTCGAATTTGATAGATTCATAGTGTTTTTTTGGCTGCGATCATCTTTTTGGGATTCAAAATCAACTTTTTGTTGAATTTTTTTAATTATTTTTGTTTTTGGTGGAGTAATTGTTTGCAAAAAACCACAGATTTCGCCGTTTTTTGTAGAGATTTTTCAATAGGTTTCAGTGAAGAACTTTTTCAAATTTGAATTTTGAATTTGGGTTTTGCTGATTAGTTGAAAAGATCTGATTTTTTTTTTGAAAATGGATAGAGTTGCATANNGTTCATCGAACTANCGGAAGTGAGGATTCAAAGTCTAAGCTTCCGGATTTCTGGCAATTTTTTTTTTGANTTTTTTGTTTTTTAGGGGTTNAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U568209" ref_strand="+" ref_description="SGN-U568209 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157356079|emb|CAO49977.1| (e_value=0) unnamed; (*ATH) AT4G19040.1 (e_value=0) | Symbol: None | pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein, contains Pfam profiles PF01852: START domain, PF00169: PH domain | chr4:10431532-10437436 REVERSE | Aliases: F13C5.210, F13C5_210; ">
      <seq>atgaaagtcagtttagtgctgctgaggatgaagatgattctcatccaaacttgctgcgaagaacaaccattggaagaggtcctcccgagtctgtatttgactggacaaaggaaatagattctgatttggcaaaccagaatgggagtaaccaagtgttctccagaaagtactggcgcttacttcaatgccaaaatggccttcgcatttttgaggagcttctggatggcgatttactaccaaaaagctgtagtagagcaatgaaggctgttggggttgtggaggctagttgtgaaaatatatttgagcttgttatgagcatggatgcaacacgttttgagtgggactgtagcttccagtatggtagtttagttgaggaggtagatggacacacagcaatactctatcacagacttcaacttgactggttccctacgttagtatggcctcgtgatctttgctatgtacgttattggcgtcgaaatgatgatggaagttatgttgtgttatttcgttccagggagcatgagaattgtggtccactacctggatatgttcgagctcatattgagagtggtggattcaatatttccccactcaaacctattaacgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaactctcccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctgttgtaccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatacgtatacatagatgtagttcctttctattttcgttcatcgtgttcttaaaatttgtttcagctcagaatggaactaagtctgtttatagacgtcgacttcattaaattcctttttttttctgttctctttccattatcagaaagagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="45240" stop="54636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45540" g_stop="45607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="78" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45608" i_stop="45689" i_length="82">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45690" g_stop="45806" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="195" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45807" i_stop="45981" i_length="175">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45982" g_stop="46022" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="236" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46023" i_stop="46122" i_length="100">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46123" g_stop="46223" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="337" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46224" i_stop="46890" i_length="667">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46891" g_stop="46986" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="433" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46987" i_stop="47385" i_length="399">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47386" g_stop="47450" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="498" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47451" i_stop="47541" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47542" g_stop="47613" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47614" i_stop="47754" i_length="141">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47755" g_stop="47910" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="726" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48642" g_stop="48871" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="956" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="996" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="49100" g_stop="49254" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="997" r_stop="1151" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="49352" g_stop="49453" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1152" r_stop="1253" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="50369" g_stop="50413" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1298" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="50503" g_stop="50643" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1299" r_stop="1439" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="51380" g_stop="51475" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1440" r_stop="1535" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="51476" i_stop="51565" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="51566" g_stop="51667" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1536" r_stop="1637" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="51668" i_stop="54022" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="54023" g_stop="54336" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1638" r_stop="1951" r_length="314" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U568209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1941</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45540" e_stop="45607"/>
          <exon e_start="45690" e_stop="45806"/>
          <exon e_start="45982" e_stop="46022"/>
          <exon e_start="46123" e_stop="46223"/>
          <exon e_start="46891" e_stop="46986"/>
          <exon e_start="47386" e_stop="47450"/>
          <exon e_start="47542" e_stop="47613"/>
          <exon e_start="47755" e_stop="47910"/>
          <exon e_start="48642" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49254"/>
          <exon e_start="49352" e_stop="49453"/>
          <exon e_start="50369" e_stop="50413"/>
          <exon e_start="50503" e_stop="50643"/>
          <exon e_start="51380" e_stop="51475"/>
          <exon e_start="51566" e_stop="51667"/>
          <exon e_start="54023" e_stop="54336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGTGCTGCTGAGGATGAAGATGATTCTCATCCAAACTTGCTGCGAAGAACAACCATTGGAAGAGGTTGTTATTTTGTCACTTGTCTGGTCTTGTTTTGCTGTCTACATGTTTGCTCAGCTATCCATTTTGCATCTTAAATGGACAGGTCCTCCCGAGTCTGTATTTGACTGGACAAAGGAAATAGATTCTGATTTGGCAAACCAGAATGGGAGTAACCAAGTGTTCTCCAGAAAGTACTGGCGCTTACTTCAATGCCAAAATGGTTTGTATAGTGTTTTTATCTTTATCTTCCTGTAAACATGTGTTGTCTGGCAATGTTTTGAATCTGTGTTCTTTTATGTTTACTATTGTGTCTTTCGGTGTAGTTAAGCTGTACAACATATAAAGTGGTATCTTTATAGACTTGACAATTTTCCTACACTAATGTGTGAATGCAGGCCTTCGCATTTTTGAGGAGCTTCTGGATGGCGATTTACTAGTATGAGTTCATCTTTGTGTTCTATGCTGGCGCAAGCATTTCCAATTTACAGAAGTATGGTTTTTCACGGTATTTCATGTAGTACTCTTTCTCTATGTAGCCAAAAAGCTGTAGTAGAGCAATGAAGGCTGTTGGGGTTGTGGAGGCTAGTTGTGAAAATATATTTGAGCTTGTTATGAGCATGGATGCAACACGTTTTGAGTAAGTAATATGAACTGTCTAGTGATTCATTGTTGTCTTTGTATTTACTTCTCGTTCCAAAGTGCTTTTGTTGTTTGTAGATAGGTTCATTCTGGAAATTAACATTAACTTTTTTGTTACGAGCTCTCAATTGGCAGTAATCTCTGAATTTGTGCATTTTGGTATTCAGAAATTGCTGGTCATCGGTGTGTAGCAAGTCTAAGCAACACCTTTTTGGCTTATGTTGGTTACACTATGGCTTTAGTAGTGATCTAGTGACTAACTATTGTCGTTCCATTTAGATGAGTGTAGAAAAGATGCGGGGTAATAGCATTCTGTGAATGCATGATAACTCTCTCAAGCTATAGTGAATAAAATAGTGTTTAGAAGAACTTTGGAAAAAAATAACTACAACCTTATAATTCTCCAAATTATATAATTTTCATTTAGGATTATCCTAATTACATCATTATGGGGATAAAGAATCCTTCCATATTTAAGTGGAAAGTGGTAGAGGGGCGGGCCCATTGTCCACCAAGTTCCGAACCTTGGGCCACTAGCCTTCGTAGACTAGACGGGGTGATTATATGCAGCCATGTGAAAAACATAATGTCTATGTTAACTTAATGCTAAAAGTCATTATCATTACATTCTCTGTTATTTCAGTCTCTAACTATTTGTCTAACAGGTGGGACTGTAGCTTCCAGTATGGTAGTTTAGTTGAGGAGGTAGATGGACACACAGCAATACTCTATCACAGACTTCAACTTGACTGGTTCCCTACGTAAGATTACTGACTTCTTTGTCGTAATGATTGCTTTTCTGTTTTGTATTTCTCATTGGACTTCTGCTTTAGTTTTTGGTTAAATTAGCTCCATCTCCTAATATACTGGTTCAAAATCACTATCAGAGTTCATGCATCTCCTAGTTTGTTTATTTTTTTCCCTGACAAATGTAGTTAATAAAAATTATGATTTTGTGCTCCCCATCCCTCCAAACACACTCAATAAAACAAATATAGAAAAGGAAATCTCATTGCAAAATTCCAGTCCAATCAATCAAGTATGCCTTTGTACCAAGTTACTTGTGGCCGGCTGTATGAATCCCTGTAATGTTGCGCTCTATGCTGGCCCACTTTTTTTCAAAAGATTCTTGGTATTTGGTTGACATTAACTGTATGCAGGTTAGTATGGCCTCGTGATCTTTGCTATGTACGTTATTGGCGTCGAAATGATGATGGAAGTTATGGTAAGTATATCCAATGGCTCTTATCTTGTAAGCTTATCTTTTGTTCCAGTTTATTTATGAATGTACTTGATTTGCCATCATTATTCTGCAGTTGTGTTATTTCGTTCCAGGGAGCATGAGAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGAGTAACCTCTATTTCCTTCCACTCATTTAGTTAGATGCTCTGAATACATATGAAAACCATAATTGATGATTCTCTATATATCTTTGGCAGAAGTACTCTGACGGTTTTATCTTAGATACTAACCAATTCTCACCACTCACAGGTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATCGTGTTCTTAAAATTTGTTTCAGCTCAGAATGGAACTAAGTCTGTTTATAGACGTCGACTTCATTAAATTCTTTTTTTTTTCTGTTCTCTTTCGATTATCAGTAAGAGCAATG</genome_strand>
        <mrna_strand>GTTTAGTGCTGCTGAGGATGAAGATGATTCTCATCCAAACTTGCTGCGAAGAACAACCATTGGAAGAG..................................................................................GTCCTCCCGAGTCTGTATTTGACTGGACAAAGGAAATAGATTCTGATTTGGCAAACCAGAATGGGAGTAACCAAGTGTTCTCCAGAAAGTACTGGCGCTTACTTCAATGCCAAAATG...............................................................................................................................................................................GCCTTCGCATTTTTGAGGAGCTTCTGGATGGCGATTTACTA....................................................................................................CCAAAAAGCTGTAGTAGAGCAATGAAGGCTGTTGGGGTTGTGGAGGCTAGTTGTGAAAATATATTTGAGCTTGTTATGAGCATGGATGCAACACGTTTTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACTGTAGCTTCCAGTATGGTAGTTTAGTTGAGGAGGTAGATGGACACACAGCAATACTCTATCACAGACTTCAACTTGACTGGTTCCCTAC...............................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTATGGCCTCGTGATCTTTGCTATGTACGTTATTGGCGTCGAAATGATGATGGAAGTTATG...........................................................................................TTGTGTTATTTCGTTCCAGGGAGCATGAGAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA.............................................................................................................................................GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATCGTGTTCTTAAAATTTGTTTCAGCTCAGAATGGAACTAAGTCTGTTTATAGACGTCGACTTCATTAAATTCCTTTTTTTTTCTGTTCTCTTTCCATTATCAGAAAGAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566072" ref_strand="+" ref_description="SGN-U566072 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157339974|emb|CAO45651.1| (e_value=2e-86) unnamed; (*ATH) AT5G26210.1 (e_value=6e-81) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:9157982-9160357 REVERSE | Aliases: T19G15.60, T19G15_60; (*SWP) sp|O81488|Y5621_ARATH (e_value=6e-80) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; ">
      <seq>gcccaaaattttcattttccccctctcccttccctccattctctctctctgtctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtgtctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgttaagatcttttcgcggtatgagaagtggatttcttatgggaagctcttcgatgccatatgttctattcaacattacaattatctattatctagttgcaagaatgttgttgtctagcgtctttttctagtatgtcgtgctgtgaatgatgtaggttgcctctctaaattagtcgttgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctgcactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55375" stop="64125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55674" g_stop="55881" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="241" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="470" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="603" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63199" g_stop="63825" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="1230" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U566072" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55674" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58774"/>
          <exon e_start="63199" e_stop="63825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTC</genome_strand>
        <mrna_strand>GCCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566070" ref_strand="-" ref_description="SGN-U566070 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147772927|emb|CAN73679.1| (e_value=2e-26) hypothetical; (*ATH) AT5G20510.1 (e_value=3e-26) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:6939594-6942895 REVERSE | Aliases: F7C8.100, F7C8_100; (*SWP) sp|O81488|Y5621_ARATH (e_value=4e-25) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; ">
      <seq>aaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttattgaggtccatcctttgtgaagtcatgaaagatctttttgcggtatgagaagtggatttcttatgggaagctctttgatgccatatgttctattctacattacaattatctattatctagttgcaagaatgttgttgtctagtgtctttttctagtatgtcgtgctgtgaatgatgtaggttgccactctaaattagtcgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctggactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaatcttttgtttcctgtggcctgcaatttcttttgttccctctcccctcttatttgattcattctgaagtagctgatacagttcagtgcacgaagcatcttgtgtttacgtgggttcgggaaaggactgtatgcaagggatataatgtggttagtacatcttaattcttgaagtaacaagtctagctgtgtatttgattaagctatttcatgggcctatatcttttttggttttctttctcatgtgtcttgattggtttgaagtttaactaatttggatttacgcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="62950" stop="64408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63250" g_stop="64108" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64109" i_stop="64251" i_length="143">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64252" g_stop="64262" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="867" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U566070" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566070" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63250" e_stop="64108"/>
          <exon e_start="64252" e_stop="64262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGC-----ATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTA--T--T--GCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAAGTTCCACTTTGGAGGGTAAATTAAGTGTATGGTGACTCCATATCTGAACTCGAATGTAAGACTCCTTTCGATTTTACCATAACCTTTGGTGTAATGAATACCTTGCAATCAAATTTTGCTCTTTTCTCTTTTTGTTTTCGTAGAAGGAAAATAT</genome_strand>
        <mrna_strand>AAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTATTGAGGTCCATCCTTTGTGAAGTCATG---A-----AAGATCTTTTTGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTTGATGCCATATGTTCTATTCTACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGTGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCACTCTAAATTAGTC---GTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGGACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTCTTTTGTT-CC-CT-CTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTTGTGTTTACGTGGGTTCGGGAAAGGACTGTATGCAAGGGATATAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTAAGCTATTTCATGGGCCTATATCTTTTTTGGTTTTCTTTCTCATGTGTCTTGATTGGTTTGAAGTTTAACTAATTTGGATTTACGCTTAAAA...............................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599780" ref_strand="+" ref_description="SGN-U599780 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>actgaagtttttatgagaaaaaggtatttgctttacagtgatttcatgtgattcttgaaagttagagcttttaacaggttaattcacatgacccttttgttgttacctatctttcttgtgttttaaggattaaagatttgtgccaagtttggatttttgactgattagctatttggggttttagtaattgtgtggatgtaaggatcttttgtggctatagttgattggtgggtagataaggaagagggaaagaagaaaaagttgaattttttgtagaaaaaagagggttcttgctgttgtgctgttgttgtgttctagctgtagttagtggtgggtagataaggaagaggaaaagaaaaagaaaaagctaagattttgagggaaaaaagggtgctttctgttttttttttttgttaaacagatctgattagcaatttctgttaagtatcctgattaatggggcgtggcgaaatgtaaaagaatgttcttttaccagttgattctcttaggcaatggaaaatggtctgttgaagctcatggtaagattattagtgattctaaagagaggtgatgaattagtttaacaatgaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="73643" stop="74840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73943" g_stop="74540" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U599780" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73943" e_stop="74540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAGTTTTTATGAGAAAAAGGTATTTGCTTTACAGTGATTTCATGTGATTCTTGAAAGTTAGAGCTTTTAACAGGTTAATTCACATGACCCTTTTGTTGTTACCTATCTTTCTTGTGTTTTAAGGATTAAAGATTTGTGCCAAGTTTGGATTTTTGACTGATTAGCTATTTGGGGTTTTAGTAATTGTGTGGATGTAAGGATCTTTTGTGGCTATAGTTGATTGGTGGGTAGATAAGGAAGAGGGAAAGAAGAAAAAGTTGAATTTTTTGTAGAAAAAAGAGGGTTCTTGCTGTTGTGCTGTTGTTGTGTTCTAGCTGTAGTTAGTGGTGGGTAGATAAGGAAGAGGAAAAGAAAAAGAAAAAGCTAAGATTTTGAGGGAAAAAAGGGTGCTTTCTGTTTTTTTTTTTTTTTGTTAAACAGATCTGATTAGCAATTTCTGTTAAGTATCCTGATTAATGGGGCGTGGCGAAATGTAAAAGAATGTTCTTTTACCAGTTGATTCTCTTAGGCAATGGAAAATGGTCTGTTGAAGCTCATGGTAAGATTATTAGTGATTCTAAAGAGAGGTGATGAATTAGTTTAACAATGAAAGGT</genome_strand>
        <mrna_strand>ACTGAAGTTTTTATGAGAAAAAGGTATTTGCTTTACAGTGATTTCATGTGATTCTTGAAAGTTAGAGCTTTTAACAGGTTAATTCACATGACCCTTTTGTTGTTACCTATCTTTCTTGTGTTTTAAGGATTAAAGATTTGTGCCAAGTTTGGATTTTTGACTGATTAGCTATTTGGGGTTTTAGTAATTGTGTGGATGTAAGGATCTTTTGTGGCTATAGTTGATTGGTGGGTAGATAAGGAAGAGGGAAAGAAGAAAAAGTTGAATTTTTTGTAGAAAAAAGAGGGTTCTTGCTGTTGTGCTGTTGTTGTGTTCTAGCTGTAGTTAGTGGTGGGTAGATAAGGAAGAGGAAAAGAAAAAGAAAAAGCTAAGATTTTGAGGGAAAAAAGGGTGCTTTCTG---TTTTTTTTTTTTGTTAAACAGATCTGATTAGCAATTTCTGTTAAGTATCCTGATTAATGGGGCGTGGCGAAATGTAAAAGAATGTTCTTTTACCAGTTGATTCTCTTAGGCAATGGAAAATGGTCTGTTGAAGCTCATGGTAAGATTATTAGTGATTCTAAAGAGAGGTGATGAATTAGTTTAACAATGAAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597637" ref_strand="+" ref_description="SGN-U597637 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|144225753|emb|CAM84273.1| (e_value=4e-50) abscisic; (*ATH) AT1G72770.2 (e_value=5e-30) |; (*SWP) sp|Q9CAJ0|PP2C6_ARATH (e_value=4e-29) Protein phosphatase 2C HAB1 OS=Arabidopsis thaliana GN=HAB1; ">
      <seq>ccccttcatcatctgtgcctgaagagagcagaagtgaagggactatgtcgcttgatgtgatatctgaaaatgaaagcaactggattgctggtgatgctgttgttagggaaagtgaggatgatgattccttatcactggagggtgatcaaattctcgataattcgtgttccctgtcagtggtgagcgattgtagtagtttatgcgctgatgattttataggctttgagatagcgtctgacatagaaggtcaggatttcgtggattctcagaaaagcatcagccatgatgaacttattggtaagactggggttttggttgagtcagatgttgaggatactttgattagacccgcggcagttcctgagagacttgaggagcagatcactgataaagatttgaatgcaacagtcagccgcagtgtttttgaagtggactacatacccttatggggatatacatctatctgtggaaggagaccagaaatggaagacgcattcgcaactgttcctagattcatgaaaattcctctaccgatgttaattggtgatcgcgtgcttgatggactgtctagacgcttgagtcatttgacgactcatttctttggagtttatgatggccatggtggttctcaggtggcaaattactgccgagaccggattcatgctgtattggctgaggagttggaaacttttatgatgaatctcagtgatgaaagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="74519" stop="75926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74813" g_stop="75444" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75445" i_stop="75539" i_length="95">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75540" g_stop="75626" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="719" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U597637" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74813" e_stop="75444"/>
          <exon e_start="75540" e_stop="75626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAGGTCTCTGTCTCTCTTTCTGACTTTGGTTCATCCAATTCCTTGTTACCTAAATATGAACAAAAATTAATTGATTCCTTTTTTTTTGTCTCTTTCAGGTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGATGAATCTCAGTGATGAAAGTATT</genome_strand>
        <mrna_strand>CCCCTTCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG...............................................................................................GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGATGAATCTCAGTGATGAAAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602079" ref_strand="+" ref_description="SGN-U602079 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggtaagtcgtctatttatgtgttacatttttttctttaccttgggataaatataatggctattattggagtaggtttctatatgtattttagtgaatgttccattatgtatgtaattttctttatttagctatttgaagtagcaaaaactactacactataatcaaatgtaatatggtccttatgcctccatagttaaaaggctctatgtaggtattttaatctattgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="76924" stop="77755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77223" g_stop="77455" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U602079" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77223" e_stop="77455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAGTCGTCTATTTATGTGTTACATTTTTTTCTTTACCTTGGGATAAATATAATGGCTATTATTGGAGTAGGTTTCTATATGTATTTTAGTGAATGTTCCATTATGTATGTAATTTTCTTTATTTAGCTATTTGAAGTAGCAAAAACTACTACACTATAATCAAATGTAATATGGTCCTTATGCCTCCATAGTTAAAAGGCTCTATGTAGGTATTTTAATCTATTGTTTG</genome_strand>
        <mrna_strand>GGGTAAGTCGTCTATTTATGTGTTACATTTTTTTCTTTACCTTGGGATAAATATAATGGCTATTATTGGAGTAGGTTTCTATATGTATTTTAGTGAATGTTCCATTATGTATGTAATTTTCTTTATTTAGCTATTTGAAGTAGCAAAAACTACTACACTATAATCAAATGTAATATGGTCCTTATGCCTCCATAGTTAAAAGGCTCTATGTAGGTATTTTAATCTATTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584607" ref_strand="+" ref_description="SGN-U584607 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157339292|emb|CAO43833.1| (e_value=3e-32) unnamed; (*ATH) AT5G12000.1 (e_value=6e-33)  Symbol: None | similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At4g31230.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g16760.1); similar to protein kinase family protein [Arabidopsis thaliana] (T... ; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=2e-13) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35; ">
      <seq>tcaaacgtgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctaggtcaagtaactctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78138" stop="81116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78438" g_stop="78715" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="364" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80428" g_stop="80549" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="486" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80628" g_stop="80816" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="675" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U584607" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78438" e_stop="78715"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80428" e_stop="80549"/>
          <exon e_start="80628" e_stop="80816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</genome_strand>
        <mrna_strand>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U594407" ref_strand="+" ref_description="SGN-U594407 Tomato 200607#2 [1 ESTs aligned] (*ATH) AT5G26150.1 (e_value=9e-13) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr5:9137464-9140102 REVERSE | Aliases: T1N24.15, T1N24_15; ">
      <seq>aaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggccaaaaattcaccaaagcgtagctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaagggttattgcagatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78151" stop="80802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78451" g_stop="78719" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78720" i_stop="79891" i_length="1172">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="354" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80417" i_length="440">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80418" g_stop="80502" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="439" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U594407" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78451" e_stop="78719"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80418" e_stop="80502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</genome_strand>
        <mrna_strand>AAAAACTAAGAATTTTT-TTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGCCAAAAATTCACCAAAGCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603740" ref_strand="+" ref_description="SGN-U603740 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|5107827|gb|AAD40140.1|AF149413_21 (e_value=5e-42) contains; (*ATH) AT5G26150.1 (e_value=5e-44) | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr5:9137464-9140102 REVERSE | Aliases: T1N24.15, T1N24_15; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=1e-16) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34; ">
      <seq>gcttgcaaagaagcggtcgtggccaaccaagcggctgatgagcttaataaatggaaaattgaagaagctcgcaagttcgaacaagcgcgttttgctgaagaggcggctcttgcaattgctgagaccgaaaaggcgaaatgcagagctgctatcgaagctgctaagaaagcacaaaagatggctgaaatagaagcgcaaagaaggaagtatgcagagttgaaagctaagcgagaggcagaaaaaaagaaacaagcaattaatgttcgatctcagaatgatatacgttataggaagtatacaatagaagagattgaggcagccaccaaaaagttctcaaatgcacaaaaaattggagaaggtggatatggacctgtttttaagggtaaactagatcacacacctgttgccattaaagttctgagtcctgatgctgcacaagggaagaaacagttccaacaagaggttgaggtcctcagtctcattaggcatccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="81674" stop="83645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81974" g_stop="82006" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82007" i_stop="82478" i_length="472">
            <donor d_prob="0.229" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82479" g_stop="82907" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="462" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82908" i_stop="83313" i_length="406">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83314" g_stop="83345" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="494" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U603740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81974" e_stop="82006"/>
          <exon e_start="82479" e_stop="82907"/>
          <exon e_start="83314" e_stop="83345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCAAAGAAGCGGTCGTGGCCAACCAAGCGGTAATAGCCCATTTTCTAACTGCCTAGAACCATAAAGATGAACACCATCTAAAACAGCAAAAAAGAGAGAAATTTATGGGCCCAACTATCTGAAATGTATTAAGCAAATCATAATTTCAAGAAACCTTGTTTTATAGTTCAATGATTTAAAAGATATTATAAGGGAACTCATGTGTCTACAAATTTTATCCATGCGTAGAACGAAGCGGCTCCCAACTCCCAAAACTACATGAATGCATTCTGCATTTTTATGGGAAGTTATTCCTCCAAGGAATATATAAGGTCTGAAATAATTGTTATTAGTTAGTACAATTCTCATCTATATGTGAGTAAGAAATAGCATTGCATCAGTTGTTTACGTTTCTGAAAAACAAGTTACAAATTTATGACATCAAGCTTAAGGACCAAGGCTTTCTCCCTCTTCTTATCCAGGAGTAAGTTTTTCATGTGTCATATTTCTACTGAGTTTCAGGCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAGGTAACCGTTTTTATTACTAATTCAATGATAGCCTCTCTTTTACAATATGTATTTAAGATATGAAACATTCTGCATTATGAGGGCTGAACAACTTCATTTTCCGTAGAATTTGTGCATTCATTGAGTCACTTCTGGAGTTAATTACACGCTATGCAATTGAGGGAATTTATGATAAATTGTAGAAAGTGGAAAATGCATTTATACTGATGATTTATTAATGTAAATGGGACATATTTTAACTTGCTATAACTAGAATGTCTAAAAGATGTTGTAGCTTGTACTCTCTCATCTATGCTACACTATTATTAGAATCCCTCTCTCTTAGTTAAATTGTTGATTGGTGTTAGTATGAGTATTTGACAAGCCGCTTACTGATGCACATGAAAAATGTTTTTTTCATTTACAGGTTGAGGTCCTCAGTCTCATTAGGCATCCAAA</genome_strand>
        <mrna_strand>GCTTGCAAAGAAGCGGTCGTGGCCAACCAAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGTCCTCAGTCTCATTAGGCATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U581466" ref_strand="+" ref_description="SGN-U581466 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|1170506|sp|P41379|IF4A2_NICPL (e_value=8e-153) Eukaryotic; (*ATH) AT3G13920.1 (e_value=2e-144)  Symbol: None | eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain | chr3:4592263-459... ; (*SWP) sp|P41379|IF4A2_NICPL (e_value=5e-154) Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia; ">
      <seq>gaattgaactccgcggcgtagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaagaagagtggaagcttgaaacactatgtgatctttacgagactttggccatcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86702" stop="91081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86998" g_stop="87110" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="174" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="712" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90781" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="947" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U581466" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86998" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCC</genome_strand>
        <mrna_strand>GAATTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAAGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACTTTGGCCATCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577345" ref_strand="+" ref_description="SGN-U577345 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|2500520|sp|Q40467|IF414_TOBAC (e_value=4e-74) Eukaryotic; (*ATH) AT3G13920.1 (e_value=6e-75)  Symbol: None | eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain | chr3:4592263-459... ; (*SWP) sp|Q40467|IF414_TOBAC (e_value=3e-75) Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum; ">
      <seq>ttttaatccaactaaaagctttaccttccatagggaaatagatcaattaaacaattcaaacaacaccaaatacaaagttatttggatactttaaaggtataaaatgacaaaccaaacaaaatttgcaaaaaaaaaaaaaaggtttcatttgaatcaggaaaggaactggtgctgtggcaaaccatggctaccagcatttcctaattccaagtctagtacaaactgatactaaatctaagaataaatataccaaaaatcgccttagaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcatcatccttggtgacaaagttgatagcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagggagacttgttggacatcaataccacgagcaaggagatcggttgtgataagcacacgagatgagccagatcggaactccctcatgatgatatctcttgtgttctgatccatgtctccatgagttgcagatactgtgtggtcacgtccacgcattttatcagtgagccagtcaacctttcgcctagtgttaacaaagatgacgctctgggtgatggccaaggtctcgtaaagatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="91739" stop="90452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91442" g_stop="90751" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-U577345" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91442" e_stop="90751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGC-AAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATGATGATATCTCTTGTGTTCTGATCCATGTCTCCATGAGTTGCAGATACTGTGTGGTCACGTCCACGCATTTTATCAGTGAGCCAGTCAACCTTTCGCCTAGTGTTAACAAAGATGACGCTCTGGGTGATGGCCAAGGTCTCGTAAAGATCACA</genome_strand>
        <mrna_strand>TTTTAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATGATGATATCTCTTGTGTTCTGATCCATGTCTCCATGAGTTGCAGATACTGTGTGGTCACGTCCACGCATTTTATCAGTGAGCCAGTCAACCTTTCGCCTAGTGTTAACAAAGATGACGCTCTGGGTGATGGCCAAGGTCTCGTAAAGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578071" ref_strand="+" ref_description="SGN-U578071 Tomato 200607#2 [63 ESTs aligned] (*GB) gi|1170506|sp|P41379|IF4A2_NICPL (e_value=0) Eukaryotic; (*ATH) AT3G13920.1 (e_value=0)  Symbol: None | eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain | chr3:4592263-459... ; (*SWP) sp|P41379|IF4A2_NICPL (e_value=0) Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia; ">
      <seq>gcgattggcggccaaatcggccgaattgctctttcacacaatatcgtcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92821" stop="98395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93124" g_stop="93278" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="182" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="251" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="358" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="789" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="98095" g_length="846"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="1635" r_length="846" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U578071" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1608</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93124" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="98095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCACACAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCT</genome_strand>
        <mrna_strand>GCTCTTTCACACAATATCGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593757" ref_strand="+" ref_description="SGN-U593757 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1170506|sp|P41379|IF4A2_NICPL (e_value=3e-86) Eukaryotic; (*ATH) AT1G54270.1 (e_value=9e-85) | Symbol: None | eukaryotic translation initiation factor 4A-2 / eIF-4A-2, similar to eukaryotic translation initiation factor 4A GI:19696 from (Nicotiana plumbaginifolia) | chr1:20263359-20265933 FORWARD | Aliases: F20D21.9, F20D21_9; (*SWP) sp|P41379|IF4A2_NICPL (e_value=2e-87) Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia; ">
      <seq>gcggcacgaggggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96102" stop="98052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96402" g_stop="96568" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97503" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="422" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97504" i_stop="97647" i_length="144">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97648" g_stop="97752" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="527" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U593757" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96402" e_stop="96568"/>
          <exon e_start="97250" e_stop="97503"/>
          <exon e_start="97648" e_stop="97752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTC-CGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAG</genome_strand>
        <mrna_strand>GCGGCACGAGGGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAA................................................................................................................................................CACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567200" ref_strand="+" ref_description="SGN-U567200 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147852004|emb|CAN80190.1| (e_value=3e-50) hypothetical; (*ATH) AT5G11890.1 (e_value=4e-37) | Symbol: None | expressed protein | chr5:3831665-3832945 FORWARD | Aliases: F14F18.60, F14F18_60; ">
      <seq>atgctcattttttctctccaaaaatggctgacagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatggcgtctcaagtgctcgatgcggattcaatttcatcgttgaaatcagatctgaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgacggaatccatggaagaattccgacggggaaaactccggcggtggcttcaactacaaatgctaaatgtaaggctgatttacgtatgaagatcttaaaatggaccttctaaattcattttttcgggacgagcgaagggcgaaaaacacatctaaattatctcgatgaattatttatcggtgtggaggtccttttttatttgaagtatgatcaaatatttatcgaatcacacgttaaccatacgttttcacttttttctaccttaatacggtaataattcaggtagaaaacgtgaatggctatagcttacgtatgttttgataaataattggttataattcggatagaaaaagcaaacacgtgataatttggatagaaaattcaaaaaatcgagatagttaaatgtagtttttttttttttactctttaacttatttttcggtgtttttatttttatttaccaattatttgcttgatttttgcaatttattcataaaaatattatactatactatttatttagtagagatgaggcaaattgagggggaaaatggttttatgtagattttttttggggaaaaatagtgtttgatataattataatatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="101258" stop="99299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100958" g_stop="99599" g_length="1360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1360" r_length="1360" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-U567200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100958" e_stop="99599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCATTTTTTCTCTCCAAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTTGGTGAAATATAGTGTTTGATATAATTATAATATACC</genome_strand>
        <mrna_strand>ATGCTCATTTTTTCTCTCCAAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGGTGTTTTTATTTTTATTTACCAATTATTTGCTTGATTTTTGCAATTTATTCATAAAAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTTGGGGAAAAATAGTGTTTGATATAATTATAATATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U583662" ref_strand="+" ref_description="SGN-U583662 Tomato 200607#2 [62 ESTs aligned] (*GB) gi|157339241|emb|CAO43782.1| (e_value=1e-127) unnamed; (*ATH) AT2G25970.1 (e_value=9e-108) | Symbol: None | KH domain-containing protein | chr2:11078729-11082747 REVERSE | Aliases: F17H15.1, F17H15_1; (*SWP) sp|Q3U0V1|FUBP2_MOUSE (e_value=5e-24) Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp; ">
      <seq>gaattgctctttacaaccacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttccgttgggtgtgttctcgagtaaagtacctatggtgttgccatgttaacccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108849" stop="115325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109147" g_stop="109552" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="676" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="769" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="841" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111158" g_stop="111274" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="958" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113712" g_stop="115026" g_length="1315"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="2273" r_length="1315" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U583662" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2272</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109147" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111037"/>
          <exon e_start="111158" e_stop="111274"/>
          <exon e_start="113712" e_stop="115026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATT-CTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</genome_strand>
        <mrna_strand>GAATTGCTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597000" ref_strand="+" ref_description="SGN-U597000 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339241|emb|CAO43782.1| (e_value=4e-28) unnamed; (*ATH) AT2G25970.1 (e_value=3e-26) | Symbol: None | KH domain-containing protein | chr2:11078729-11082747 REVERSE | Aliases: F17H15.1, F17H15_1; ">
      <seq>gagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggcggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110136" stop="114731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110436" g_stop="110640" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110641" i_stop="114060" i_length="3420">
            <donor d_prob="0.235" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114061" g_stop="114431" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="576" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U597000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110436" e_stop="110640"/>
          <exon e_start="114061" e_stop="114431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGG</genome_strand>
        <mrna_strand>GAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGCGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U583664" ref_strand="+" ref_description="SGN-U583664 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>gattatattttttcagcagtggtgaaatttgctgacacattaagttacagtttactttgttgctagagcatcatgaatgagaaattaataatccaatatatgacttcattaggatcttcatgatctgtatctgcaagtttcatgtatgtgtgttgctgtcaattacctatatccgtccttgcatcgctagaattcatagtgtttgcagatcattttgccagtcctcttcttggtcgacagcgtcagttaatgggaattctagttcatgtcagtgacccctggatgaaggagattggctcttgctgtgcttcattttttggaaggaagtattcttattaatattggagatatgctttctagttgcaaagtaggtctttgcgagtattttgctccactcttaactatagctccattactttaaatagaaggattaatagattgttatccacataatatatctgtaatgtgacatgacacctacatatgtcaaccttttttcccatcagttctttttaattagttggatgttgctggagcaagagatcagtttctaacccaaggcattatcaggtttaagatgacttatcaaaatgtttagttgcctcaatgtctattgatctatatttcattggactttagatgttgtgatttttgtgaggcgcaggttttggggaggttctccttgaaggtaactaagtctgtctaaaaattttccgtaatattgaggatatattataatctgagatgtgcaataactcttggtttaatggtttgggtacttggttaatatcaagagacaacatataactattctggttaattttgtatctgatcactgatattattattggaaaatttgtaggcttagtatgtattggacaatggtgacaccaacatggaaccataagtgttggtgttccctcagcattgttctggtatggtcttcaacctaattattgattaactaatgtcatatgctgggagtaaatgagggactgattttgctaggatttgcaatggaggaaactaagatttgttgagatttatcattgttatcttttaggtgtcaatcttgagatattatatgaatgtactacataagtgttgtaacaaagagtgtttggtgtaattatctattgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagtgctttatttggtttctctcaagaaaaatccattactttcattactaagccactagtatctgattttccctttctccatagaccttttagtcatggctatgaagatcgaacttcctttgaggtttggagtgctttaaggatcattagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacctcaaggtgcactgctcttgctgctttgcgaacacatcatatttattcttaatattgaagtttgtcgtttctctaattcgcatgtcattgaaacagttatacaacttctctgggtatataaatttgaatacaccatatcattattatataaaattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaaatagggtgaggatgagcatctgccaggagttttgtacctcccaaccagtaagtcttacatctgtcttgatgcatacctaatattaattgttatatgtttgtggtataagttactgtttcatctgctatgattatgctacctgggtgtggcttagtctgcccttgcaatgtgagttatttaaatatgcttgaatcaatcatattcttggttagtttagacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataataatgcctatggttaccaaccagcaacctgcctcaggttacggtcaaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="111270" stop="114376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111569" g_stop="114076" g_length="2508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2510" r_length="2510" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-U583664" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2508</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111569" e_stop="114076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTA-ATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTA-CAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACA</genome_strand>
        <mrna_strand>GATTATATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATGCTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAATGCCTATGGTTACCAACCAGCAACCTGCCTCAGGTTACGGTCAAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1645" PGL_stop="4763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1645" e_stop="1803"/>
            <exon e_start="1881" e_stop="1978"/>
            <exon e_start="2835" e_stop="2867"/>
            <exon e_start="4534" e_stop="4763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="1645" e_stop="1803" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1881" e_stop="1978" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2835" e_stop="2867" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="4534" e_stop="4763" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1645" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</gDNA_template>
            <first_frame> C  L  F  S  T  P  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y  </first_frame>
            <second_frame>  A  Y  F  L  R  P  *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I </second_frame>
            <third_frame>   L  I  F  Y  A  H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1673" stop="1803"/>
                    <exon start="1881" stop="1978"/>
                    <exon start="2835" stop="2867"/>
                    <exon start="4534" stop="4613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6254" PGL_stop="5416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6254" e_stop="5976"/>
            <exon e_start="5864" e_stop="5735"/>
            <exon e_start="5656" e_stop="5416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.801" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6254" e_stop="5976" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="5975" i_stop="5865" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5864" e_stop="5735" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.801">
            <gDNA_intron_boundary i_start="5734" i_stop="5657" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="5656" e_stop="5416" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6254" stop="5976"/>
              <exon start="5864" stop="5735"/>
              <exon start="5656" stop="5416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG : TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG : AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGTGTATAACTATCAGACAATTAGCTGATGGAACTAGAG</gDNA_template>
            <first_frame> E  R  A  W  T  I  S  I  S  R  F  *  C  N  L  *  G  S  F  I  *  L  P  N  R  K  F  K  F  Y  S  S  L  G  F  Y  K  Y  W  S  F  P  N  T  N  *  N  *  S  *  I  K  *  C  D  V  G  R  *  R  G  G  *  R  V  D  S  T  S  G  A  W  N  S  D  Y  F  *  F  S  S  S  W  W  K  *  S  *  K  N  Q  I  *  :  S  G  R  V  Q  Q  M  A  S  S  K  M  V  G  *  K  L  *  Q  N  Y  G  A  L  Q  C  S  E  I  *  *  V  C  S  S  H  T  L  T  V  *  G  W   : E  R  F  K  L  F  V  K  A  G  I  C  K  G  F  P  T  I  Q  C  W  I  R  C  S  C  P  *  F  P  K  G  Q  W  G  I  K  N  D  N  L  L  *  R  R  S  F  S  F  C  K  *  C  *  *  Y  G  V  R  M  D  R  T  R  *  T  W  S  V  Y  N  Y  Q  T  I  S  *  W  N  *   </first_frame>
            <second_frame>  K  G  H  G  P  Y  P  Y  P  D  F  D  A  I  S  K  G  V  L  Y  N  Y  Q  T  G  S  S  N  S  T  P  A  W  D  F  T  S  T  G  H  F  Q  T  P  T  R  T  D  P  R  L  S  D  V  M  L  E  D  E  E  E  A  K  E  W  T  A  Q  V  E  P  G  I  Q  I  T  F  D  S  L  P  H  G  G  N  D  L  K  R  I  R  F  S :   R  D  V  F  N  K  W  Q  A  Q  R  W  W  G  E  N  Y  D  R  I  M  E  L  Y  N  V  Q  R  F  N  K  Y  A  L  H  T  P  S  Q  S  E  D  G  :  R  D  S  N  Y  S  S  R  P  G  S  A  R  D  F  Q  Q  Y  N  A  G  L  G  A  H  V  P  S  F  P  K  G  S  G  V  S  R  T  T  T  S  S  R  D  E  A  S  V  S  V  S  N  A  S  D  M  E  S  E  W  I  E  Q  D  E  P  G  V  C  I  T  I  R  Q  L  A  D  G  T  R  </second_frame>
            <third_frame>   K  G  M  D  H  I  H  I  Q  I  L  M  Q  S  L  R  E  F  Y  I  I  T  K  Q  E  V  Q  I  L  L  Q  L  G  I  L  Q  V  L  V  I  S  K  H  Q  L  E  L  I  L  D  *  V  M  *  C  W  K  M  K  R  R  L  K  S  G  Q  H  K  W  S  L  E  F  R  L  L  L  I  L  F  L  M  V  E  M  I  L  K  E  S  D  L   : V  G  T  C  S  T  N  G  K  L  K  D  G  G  V  K  I  M  T  E  L  W  S  F  T  M  F  R  D  L  I  S  M  L  F  T  H  P  H  S  L  R  M  G :   E  I  Q  I  I  R  Q  G  R  D  L  Q  G  I  S  N  N  T  M  L  D  *  V  L  M  S  L  V  S  Q  R  A  V  G  Y  Q  E  R  Q  P  P  L  E  T  K  L  Q  F  L  *  V  M  L  V  I  W  S  Q  N  G  *  N  K  M  N  L  E  C  V  *  L  S  D  N  *  L  M  E  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6253" stop="5976"/>
                    <exon start="5864" stop="5735"/>
                    <exon start="5656" stop="5417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGHGPYPYPDFDAISKGVLYNYQTGSSNSTPAWDFTSTGHFQTPTRTDPRLSDVMLEDEEEAKEWTAQVEPGIQITFDSLPHGGNDLKRIRFSRDVFNKWQAQRWWGENYDRIMELYNVQRFNKYALHTPSQSEDGRDSNYSSRPGSARDFQQYNAGLGAHVPSFPKGSGVSRTTTSSRDEASVSVSNASDMESEWIEQDEPGVCITIRQLADGTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17714" PGL_stop="16998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17714" e_stop="16998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="17714" e_stop="16998" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17714" stop="16998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17714" stop="17232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTT</gDNA_template>
            <first_frame> H  H  Q  P  I  K  T  M  *  R  E  V  V  K  Q  I  *  *  R  S  S  K  K  N  K  K  K  I  M  E  T  C  S  F  P  R  I  V  L  S  P  L  N  P  L  I  S  K  N  K  H  F  Q  I  P  K  S  K  Q  S  H  I  K  I  T  P  L  F  A  T  L  N  S  P  K  G  F  G  P  S  P  K  K  I  T  K  K  S  K  K  I  P  K  Q  E  N  E  D  Q  Y  D  D  N  D  D  N  D  D  D  D  E  Q  E  R  G  V  I  P  E  I  V  T  N  R  M  I  S  R  M  G  F  S  V  G  I  P  L  F  I  G  L  L  F  F  P  F  F  Y  Y  L  K  V  G  L  K  I  D  V  P  T  W  V  P  F  I  V  S  F  V  F  F  G  S  A  L  L  G  V  S  Y  G  I  V  S  S  S  W  D  P  M  R  E  G  S  T  L  G  W  N  E  A  K  K  N  W  P  V  F  W  Q  S  I  S  G  G  G  S  R  K  K  Y  *  E  F  F  G  L  C  L  C  I  F  Y  E  Y  N  N  V  F </first_frame>
            <second_frame>  T  T  N  Q  L  K  Q  C  E  E  K  L  *  S  K  S  S  E  E  V  Q  K  K  I  K  K  K  *  W  K  H  V  H  F  Q  E  L  Y  Y  L  L  *  I  H  *  Y  Q  K  T  N  T  F  K  F  P  N  P  N  N  H  I  *  K  S  H  L  F  L  Q  H  S  I  L  Q  K  V  L  D  L  P  L  R  K  L  P  K  N  P  R  K  Y  Q  N  K  K  M  K  I  N  T  T  I  T  M  I  M  M  M  M  M  N  K  K  E  E  L  Y  Q  R  *  *  L  I  E  *  *  V  E  W  D  F  Q  L  V  F  L  C  L  L  V  Y  C  F  F  L  F  F  I  I  L  R  L  V  *  K  L  M  Y  L  L  G  Y  L  L  L  C  H  L  C  F  L  G  V  P  Y  W  E  L  V  M  G  *  F  H  L  V  G  I  Q  *  E  K  G  Q  L  W  V  G  M  K  L  R  R  I  G  L  F  F  G  N  Q  L  V  E  V  D  Q  E  K  S  I  R  S  F  L  D  F  A  Y  V  S  F  M  N  I  I  M  C   </second_frame>
            <third_frame>   P  P  T  N  *  N  N  V  K  R  S  C  K  A  N  L  V  K  K  F  K  K  K  *  K  K  N  N  G  N  M  F  I  S  K  N  C  I  I  S  F  K  S  T  N  I  K  K  Q  T  L  S  N  S  Q  I  Q  T  I  T  Y  K  N  H  T  S  F  C  N  T  Q  F  S  K  R  F  W  T  F  P  *  E  N  Y  Q  K  I  Q  E  N  T  K  T  R  K  *  R  S  I  R  R  *  R  *  *  *  *  *  *  *  T  R  K  R  S  Y  T  R  D  S  N  *  *  N  D  K  *  N  G  I  F  S  W  Y  S  F  V  Y  W  F  I  V  F  S  F  F  L  L  S  *  G  W  F  K  N  *  C  T  Y  L  G  T  F  Y  C  V  I  C  V  F  W  E  C  L  I  G  S  *  L  W  D  S  F  I  *  L  G  S  N  E  R  R  V  N  F  G  L  E  *  S  *  E  E  L  A  C  F  L  A  I  N  *  W  R  W  I  K  K  K  V  L  G  V  F  W  T  L  L  M  Y  L  L  *  I  *  *  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17660" stop="17049"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKKNKKKIMETCSFPRIVLSPLNPLISKNKHFQIPKSKQSHIKITPLFATLNSPKGFGPSPKKITKKSKKIPKQENEDQYDDNDDNDDDDEQERGVIPEIVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFVFFGSALLGVSYGIVSSSWDPMREGSTLGWNEAKKNWPVFWQSISGGGSRKKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18321" PGL_stop="21865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18321" e_stop="18403"/>
            <exon e_start="19916" e_stop="20162"/>
            <exon e_start="20320" e_stop="20592"/>
            <exon e_start="21542" e_stop="21865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18321" e_stop="18403" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19916" e_stop="20162" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.951">
            <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20320" e_stop="20592" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20593" i_stop="21541" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21542" e_stop="21865" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18321" stop="18403"/>
              <exon start="19916" stop="20162"/>
              <exon start="20320" stop="20592"/>
              <exon start="21542" stop="21865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG : GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG : CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG : GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGT</gDNA_template>
            <first_frame> T  T  I  L  T  K  F  Q  F  Q  I  I  F  P  S  S  F  A  N  I  T  L  S  S  T  L  S  W :   *  R  *  L  *  R  V  C  S  G  D  T  K  D  G  I  Q  C  I  L  H  M  E  P  S  G  A  W  E  *  A  L  A  V  G  W  D  G  V  L  D  L  V  L  R  L  L  V  M  L  E  L  D  V  V  L  D  S  A  L  A  S  L  C  S  A  L  A  L  V  Y  L  P  I  T  F  T  Q  V  L  T  M  :  H  S  Q  L  P  E  V  V  L  L  R  C  L  D  Q  L  I  F  E  A  *  E  T  L  W  K  R  V  G  V  T  S  I  Q  I  L  L  A  S  K  K  E  *  F  S  L  F  Q  A  *  G  S  K  N  Q  *  G  R  R  *  I  R  L  K  C  Q  S  K  C  L  F  R  I  N  A  W  I  V  *  N  K  A  S  I  A  Y  F  I  L  A  K  :  V  Q  R  I  K  Q  H  V  E  E  H  N  P  R  R  V  N  I  H  C  T  L  H  S  I  G  L  S  F  F  A  F  P  Q  I  V  G  S  I  *  V  E  E  K  R  A  F  T  V  A  V  V  N  M  L  S  F  L  L  V  W  *  T  L  F  E  *  K  *  E  F  E  L  I  R  K  R  V  K  N  V  S  E  L  S  R  K  V  I  I  Y  P  S  S  L  S  I  Y  Y  A  N  N  T  F  R  I  F  S </first_frame>
            <second_frame>  L  L  Y  *  Q  N  F  N  F  K  *  F  F  L  R  A  S  R  T  L  H  *  A  A  P  F  H   : G  R  D  D  Y  K  G  S  V  Q  E  I  R  K  M  E  S  S  A  S  Y  I  W  S  L  L  G  H  G  N  R  R  W  L  W  G  G  M  G  S  W  I  W  S  *  G  Y  W  L  C  W  S  W  M  W  C  W  I  Q  R  W  L  L  S  A  R  R  W  H  W  S  T  C  Q  L  H  L  H  R  S  L  Q  C :   I  H  S  C  Q  K  W  C  Y  *  D  V  S  I  N  *  Y  S  K  H  E  K  H  C  G  R  E  S  V  L  P  R  F  K  Y  C  W  L  P  R  K  S  D  S  V  F  F  K  H  K  V  Q  R  I  S  R  E  G  G  R  F  V  *  N  A  N  Q  N  V  F  S  G  S  M  H  G  S  S  K  T  R  H  Q  *  L  I  S  S  L  Q  R :   F  K  G  L  S  N  M  L  R  S  T  I  P  E  G  L  I  Y  I  A  H  F  T  A  L  A  L  V  F  L  P  S  H  R  *  *  G  A  Y  R  *  K  K  K  E  H  L  Q  L  Q  L  L  T  C  F  H  F  F  *  F  G  K  H  C  L  N  E  S  E  N  L  N  *  Y  G  K  G  S  K  M  S  L  N  Y  R  E  R  S  *  Y  T  L  R  L  C  P  S  I  M  L  I  I  L  F  G  F  L   </second_frame>
            <third_frame>   Y  Y  I  N  K  I  S  I  S  N  N  F  S  F  E  L  R  E  H  Y  T  E  Q  H  P  F  M  :  V  E  M  I  I  K  G  L  F  R  R  Y  E  R  W  N  P  V  H  P  T  Y  G  A  F  W  G  M  G  I  G  V  G  C  G  V  G  W  G  P  G  F  G  P  E  A  I  G  Y  V  G  A  G  C  G  V  G  F  S  V  G  F  S  L  L  G  V  G  I  G  L  P  A  N  Y  I  Y  T  G  P  Y  N   : A  F  T  A  A  R  S  G  A  I  E  M  S  R  S  T  D  I  R  S  M  R  N  I  V  E  E  S  R  C  Y  L  D  S  N  I  A  G  F  Q  E  R  V  I  Q  S  F  S  S  I  R  F  K  E  S  V  G  K  A  V  D  S  S  E  M  P  I  K  M  S  F  P  D  Q  C  M  D  R  L  K  Q  G  I  N  S  L  F  H  P  C  K   : G  S  K  D  *  A  T  C  *  G  A  Q  S  Q  K  G  *  Y  T  L  H  T  S  Q  H  W  P  *  F  F  C  L  P  T  D  S  R  E  H  I  G  R  R  K  K  S  I  Y  S  C  S  C  *  H  A  F  I  S  F  S  L  V  N  I  V  *  M  K  V  R  I  *  I  N  T  E  K  G  Q  K  C  L  *  T  I  A  K  G  H  N  I  P  F  V  F  V  H  L  L  C  *  *  Y  F  S  D  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18323" stop="18403"/>
                    <exon start="19916" stop="20162"/>
                    <exon start="20320" stop="20592"/>
                    <exon start="21542" stop="21555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYINKISISNNFSFELREHYTEQHPFMVEMIIKGLFRRYERWNPVHPTYGAFWGMGIGVGCGVGWGPGFGPEAIGYVGAGCGVGFSVGFSLLGVGIGLPANYIYTGPYNAFTAARSGAIEMSRSTDIRSMRNIVEESRCYLDSNIAGFQERVIQSFSSIRFKESVGKAVDSSEMPIKMSFPDQCMDRLKQGINSLFHPCKGSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30192" PGL_stop="28012"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30192" e_stop="29673"/>
            <exon e_start="28309" e_stop="28012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30192" e_stop="29673" e_length="520"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28309" e_stop="28012" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30192" stop="29673"/>
              <exon start="28309" stop="28012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTTTATTCCCATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT : TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</gDNA_template>
            <first_frame> H  L  Y  S  H  V  P  M  L  P  F  S  L  I  S  Q  L  T  H  P  N  L  Y  *  I  N  L  K  N  L  H  F  *  A  N  G  G  T  N  Q  T  *  S  T  P  L  M  I  I  I  Q  N  P  R  S  V  P  L  L  G  N  S  N  N  F  C  S  L  Y  L  I  H  *  K  S  E  T  P  L  Y  *  L  Q  W  *  *  *  F  L  G  T  A  F  F  G  E  L  *  S  G  Y  L  G  I  F  V  F  F  F  R  W  E  M  S  M  A  A  E  N  G  Y  R  P  P  F  T  A  V  Q  W  Q  E  L  E  H  Q  A  M  I  Y  K  Y  L  V  A  G  I  P  V  P  A  D  L  V  V  P  I  R  R  S  F  E  P  I  S  A  R  F  F  H  H  P  S   : L  G  Y  C  S  Y  Y  G  K  K  F  D  P  E  P  G  R  C  R  R  T  D  G  K  K  W  R  C  A  K  D  A  Y  P  D  S  K  Y  C  E  R  H  M  H  R  G  R  N  R  S  R  K  H  V  E  S  Q  S  T  A  Q  S  L  L  T  S  M  S  H  N  T  T  G  S  T  T  G  S  S  K  T  S  G  N  F  Q  R  N  S  S  E  S  F  Q  N  T  P  L  Y   </first_frame>
            <second_frame>  T  F  I  P  M  S  Q  C  F  L  L  A  *  S  L  N  *  L  I  Q  I  C  T  K  S  T  S  K  I  S  I  F  K  L  M  E  V  L  I  K  L  N  Q  P  P  *  *  *  L  S  K  T  L  D  L  S  P  Y  *  V  T  P  T  T  F  A  L  Y  I  S  Y  T  E  S  L  K  H  L  Y  I  N  S  S  G  D  N  N  F  W  V  Q  L  F  L  V  N  C  E  V  G  I  W  G  F  L  F  S  F  L  G  G  R  *  V  W  R  R  R  M  G  T  D  R  R  S  R  L  C  S  G  R  N  W  S  I  K  L  *  Y  I  S  I  W  W  L  V  F  R  C  R  R  T  L  L  C  L  Y  D  V  A  L  N  P  F  Q  Q  G  S  F  I  I  L  A  :  W  G  T  V  P  I  M  G  R  S  L  I  L  S  Q  E  G  V  E  G  Q  M  E  R  S  G  G  A  P  K  M  H  I  L  T  Q  S  I  A  S  G  T  C  I  E  A  A  T  V  Q  E  S  M  W  N  L  N  R  L  P  S  P  C  *  L  V  C  H  I  I  L  L  G  A  L  L  G  A  A  K  Q  A  A  I  S  N  V  T  A  V  K  A  S  R  T  R  H  Y  I  </second_frame>
            <third_frame>   P  L  F  P  C  P  N  A  S  F  *  L  N  L  S  I  N  S  S  K  F  V  L  N  Q  P  Q  K  S  P  F  L  S  *  W  R  Y  *  S  N  L  I  N  P  L  N  D  N  Y  P  K  P  *  I  C  P  L  I  R  *  L  Q  Q  L  L  L  S  I  S  H  T  L  K  V  *  N  T  F  I  L  T  P  V  V  I  I  I  S  G  Y  S  F  F  W  *  I  V  K  W  V  F  G  D  F  C  F  L  F  *  V  G  D  E  Y  G  G  G  E  W  V  Q  T  A  V  H  G  C  A  V  A  G  I  G  A  S  S  Y  D  I  *  V  F  G  G  W  Y  S  G  A  G  G  P  C  C  A  Y  T  T  *  L  *  T  H  F  S  K  V  L  S  S  S  *  L :   G  V  L  F  L  L  W  E  E  V  *  S  *  A  R  K  V  *  K  D  R  W  K  E  V  E  V  R  Q  R  C  I  S  *  L  K  V  L  R  A  A  H  A  S  R  P  Q  P  F  K  K  A  C  G  I  S  I  D  C  P  V  L  V  D  *  Y  V  T  *  Y  Y  W  E  H  Y  W  E  Q  Q  N  K  R  Q  F  P  T  *  Q  Q  *  K  L  P  E  H  A  T  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29898" stop="29673"/>
                    <exon start="28309" stop="28014"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYLGIFVFFFRWEMSMAAENGYRPPFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRRSFEPISARFFHHPSLGYCSYYGKKFDPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVESQSTAQSLLTSMSHNTTGSTTGSSKTSGNFQRNSSESFQNTPLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32840" PGL_stop="38687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32840" e_stop="32914"/>
            <exon e_start="34595" e_stop="34643"/>
            <exon e_start="35481" e_stop="35589"/>
            <exon e_start="36717" e_stop="36810"/>
            <exon e_start="37418" e_stop="37551"/>
            <exon e_start="37929" e_stop="38092"/>
            <exon e_start="38471" e_stop="38687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.259" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.863" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="32840" e_stop="32914" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.259" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34595" e_stop="34643" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35481" e_stop="35589" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36717" e_stop="36810" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37418" e_stop="37551" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37929" e_stop="38092" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38471" e_stop="38687" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32840" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG : GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG : GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA : CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA : GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG : GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT : GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</gDNA_template>
            <first_frame> S  K  N  H  F  L  E  I  H  F  S  Y  I  *  F  F  *  N  E  S  I  W  S  W  K  :  E  S  E  N  I  P  S  Q  K  E  C  T  L  R  E  *   : G  C  T  I  K  T  A  H  *  F  Y  F  R  Q  R  K  L  E  R  G  C  K  A  S  S  W  G  R  Y  *  *  M  A  S  C  Q  H :   C  R  F  L  Q  P  G  E  S  A  L  W  H  P  H  *  V  L  Y  T  R  K  L  P  N  N  D  C  R  P  Q  :  V  *  V  *  V  G  *  W  C  T  N  Q  E  A  Y  *  S  F  C  S  E  I  C  *  I  F  D  G  L  D  *  N  S  I  G  *  *  I  F  I  S  S  K  A  W :   C  T  F  S  T  *  L  Q  G  C  C  Q  D  D  I  Q  T  S  L  S  C  I  C  T  Y  L  S  L  P  F  S  E  D  R  E  S  *  G  G  S  T  F  E  Y  V  L  Q  A  F  H  S  L  H  P   : *  I  W  V  D  *  Q  K  G  A  S  S  T  P  R  S  H  R  F  Y  Y  C  A  L  L  I  I  F  F  Q  F  L  L  L  T  Y  F  *  *  E  I  N  E  Y  G  V  I  K  M  Y  F  Y  H  S  I  I  S  M  *  S  K  S  L  T  F  *  Y  H  Y  *  Y  C   </first_frame>
            <second_frame>  R  K  I  I  F  *  K  S  I  F  H  I  Y  N  F  F  K  M  S  L  F  G  L  G  R :   N  Q  R  T  F  R  P  K  K  S  A  P  S  G  S  K  :  G  A  Q  L  R  Q  H  I  D  S  T  L  G  S  G  N  L  R  E  A  V  R  L  P  P  G  E  D  I  N  E  W  L  A  V  N   : T  V  D  F  F  N  Q  V  N  L  L  Y  G  T  L  T  E  F  C  T  P  E  N  C  P  T  M  T  A  G  P  K :   Y  E  Y  R  W  A  D  G  V  Q  I  K  K  P  I  E  V  S  A  P  K  Y  V  E  Y  L  M  D  W  I  E  T  Q  L  D  D  E  S  L  F  P  Q  R  L   : G  A  P  F  P  P  N  F  K  D  V  V  K  T  I  F  K  R  L  F  R  V  Y  A  H  I  Y  H  S  H  F  Q  K  I  V  S  L  K  E  E  A  H  L  N  T  C  F  K  H  F  I  L  F  T  H  :  E  F  G  L  I  D  K  K  E  L  A  P  L  Q  D  L  I  D  S  I  I  V  P  Y  *  S  S  S  F  S  F  C  F  *  P  I  F  N  R  K  L  M  S  M  V  *  *  K  C  I  F  T  I  L  *  *  V  C  S  L  K  V  *  H  F  N  I  I  I  D  I  V  </second_frame>
            <third_frame>   E  K  S  F  F  R  N  P  F  F  I  Y  I  I  F  L  K  *  V  Y  L  V  L  E   : G  I  R  E  H  S  V  P  K  R  V  H  P  Q  G  V  R :   V  H  N  *  D  S  T  L  I  L  L  *  A  A  E  T  *  E  R  L  *  G  F  L  L  G  K  I  L  M  N  G  *  L  S  T  :  L  *  I  S  S  T  R  *  I  C  F  M  A  P  S  L  S  S  V  H  Q  K  T  A  Q  Q  *  L  Q  A  P   : S  M  S  I  G  G  L  M  V  Y  K  S  R  S  L  L  K  F  L  L  R  N  M  L  N  I  *  W  T  G  L  K  L  N  W  M  M  N  L  Y  F  L  K  G  L  :  V  H  L  F  H  L  T  S  R  M  L  S  R  R  Y  S  N  V  S  F  V  Y  M  H  I  S  I  T  P  I  F  R  R  S  *  V  L  R  R  K  H  I  *  I  R  A  S  S  I  S  F  S  S  P  M :   N  L  G  *  L  T  K  R  S  *  L  H  S  K  I  S  *  I  L  L  L  C  L  T  N  H  L  L  S  V  F  A  F  N  L  F  L  I  G  N  *  *  V  W  C  D  K  N  V  F  L  P  F  Y  N  K  Y  V  V  *  K  F  D  I  L  I  S  L  L  I  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32859" stop="32914"/>
                    <exon start="34595" stop="34643"/>
                    <exon start="35481" stop="35589"/>
                    <exon start="36717" stop="36810"/>
                    <exon start="37418" stop="37551"/>
                    <exon start="37929" stop="38092"/>
                    <exon start="38471" stop="38545"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSIFHIYNFFKMSLFGLGRNQRTFRPKKSAPSGSKGAQLRQHIDSTLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLTEFCTPENCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDESLFPQRLGAPFPPNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEFGLIDKKELAPLQDLIDSIIVPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40356" PGL_stop="40760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40356" e_stop="40760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="40356" e_stop="40760" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40356" stop="40760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTCGTTTTTTTCTGCTCAATTTTGTTCAGAATTGTGCAGAAGAAGATTCGAATTTGATAGATTCATAGTGTTTTTTTGGCTGCGATCATCTTTTTGGTATTCAAAATCAACTTTTTGTTGAATTTTTTTAATTATTTTTGTTTTTGGTGGAGTAATTGTTTGCAAAAAACCACAGATTTCGCCGTTTTTTGTAGAGATTTTTCAATAGGTTTCAGTGAAGAACTTTTTCAAATTTGAATTTTGAATTTGGGTTTTGCTGATTAGTTGAAAAGATCTGATTTTTTTTTTGAAGATGGATAGAGTTGCATAGTGTTCATCGAACTAGCGGAAGTGAGGATTCAAAGTCTAAGCTTCCGGATTTCTGGCAATTTTTTTTTGAGTTTTTTGTTTTTTAGGGGTTTAT</gDNA_template>
            <first_frame> G  S  F  F  S  A  Q  F  C  S  E  L  C  R  R  R  F  E  F  D  R  F  I  V  F  F  W  L  R  S  S  F  W  Y  S  K  S  T  F  C  *  I  F  L  I  I  F  V  F  G  G  V  I  V  C  K  K  P  Q  I  S  P  F  F  V  E  I  F  Q  *  V  S  V  K  N  F  F  K  F  E  F  *  I  W  V  L  L  I  S  *  K  D  L  I  F  F  L  K  M  D  R  V  A  *  C  S  S  N  *  R  K  *  G  F  K  V  *  A  S  G  F  L  A  I  F  F  *  V  F  C  F  L  G  V  Y </first_frame>
            <second_frame>  A  R  F  F  L  L  N  F  V  Q  N  C  A  E  E  D  S  N  L  I  D  S  *  C  F  F  G  C  D  H  L  F  G  I  Q  N  Q  L  F  V  E  F  F  *  L  F  L  F  L  V  E  *  L  F  A  K  N  H  R  F  R  R  F  L  *  R  F  F  N  R  F  Q  *  R  T  F  S  N  L  N  F  E  F  G  F  C  *  L  V  E  K  I  *  F  F  F  *  R  W  I  E  L  H  S  V  H  R  T  S  G  S  E  D  S  K  S  K  L  P  D  F  W  Q  F  F  F  E  F  F  V  F  *  G  F   </second_frame>
            <third_frame>   L  V  F  F  C  S  I  L  F  R  I  V  Q  K  K  I  R  I  *  *  I  H  S  V  F  L  A  A  I  I  F  L  V  F  K  I  N  F  L  L  N  F  F  N  Y  F  C  F  W  W  S  N  C  L  Q  K  T  T  D  F  A  V  F  C  R  D  F  S  I  G  F  S  E  E  L  F  Q  I  *  I  L  N  L  G  F  A  D  *  L  K  R  S  D  F  F  F  E  D  G  *  S  C  I  V  F  I  E  L  A  E  V  R  I  Q  S  L  S  F  R  I  S  G  N  F  F  L  S  F  L  F  F  R  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0216D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="45540" PGL_stop="54336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45540" e_stop="45607"/>
            <exon e_start="45690" e_stop="45806"/>
            <exon e_start="45982" e_stop="46022"/>
            <exon e_start="46123" e_stop="46223"/>
            <exon e_start="46891" e_stop="46986"/>
            <exon e_start="47386" e_stop="47450"/>
            <exon e_start="47542" e_stop="47613"/>
            <exon e_start="47755" e_stop="47910"/>
            <exon e_start="48642" e_stop="48871"/>
            <exon e_start="48962" e_stop="49001"/>
            <exon e_start="49100" e_stop="49254"/>
            <exon e_start="49352" e_stop="49453"/>
            <exon e_start="50369" e_stop="50413"/>
            <exon e_start="50503" e_stop="50643"/>
            <exon e_start="51380" e_stop="51475"/>
            <exon e_start="51566" e_stop="51667"/>
            <exon e_start="54023" e_stop="54336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.558" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.083" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45540" e_stop="45607" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.925">
            <gDNA_intron_boundary i_start="45608" i_stop="45689" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45690" e_stop="45806" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.981">
            <gDNA_intron_boundary i_start="45807" i_stop="45981" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45982" e_stop="46022" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.841" acc_prob="0.935">
            <gDNA_intron_boundary i_start="46023" i_stop="46122" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46123" e_stop="46223" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46224" i_stop="46890" i_length="667"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46891" e_stop="46986" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="46987" i_stop="47385" i_length="399"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47386" e_stop="47450" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47451" i_stop="47541" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47542" e_stop="47613" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.960" acc_prob="0.721">
            <gDNA_intron_boundary i_start="47614" i_stop="47754" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47755" e_stop="47910" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.751" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="48642" e_stop="48871" e_length="230"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="48962" e_stop="49001" e_length="40"/>
          </exon>
          <intron i_serial="10" don_prob="0.974" acc_prob="0.558">
            <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49100" e_stop="49254" e_length="155"/>
          </exon>
          <intron i_serial="11" don_prob="0.703" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="49352" e_stop="49453" e_length="102"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.865">
            <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="50369" e_stop="50413" e_length="45"/>
          </exon>
          <intron i_serial="13" don_prob="0.787" acc_prob="0.083">
            <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="50503" e_stop="50643" e_length="141"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="51380" e_stop="51475" e_length="96"/>
          </exon>
          <intron i_serial="15" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51476" i_stop="51565" i_length="90"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="51566" e_stop="51667" e_length="102"/>
          </exon>
          <intron i_serial="16" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51668" i_stop="54022" i_length="2355"/>
          </intron>
          <exon e_serial="17" e_score="0.990">
            <gDNA_exon_boundary e_start="54023" e_stop="54336" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45540" stop="45607"/>
              <exon start="45690" stop="45806"/>
              <exon start="45982" stop="46022"/>
              <exon start="46123" stop="46223"/>
              <exon start="46891" stop="46986"/>
              <exon start="47386" stop="47450"/>
              <exon start="47542" stop="47613"/>
              <exon start="47755" stop="47910"/>
              <exon start="48642" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49254"/>
              <exon start="49352" stop="49453"/>
              <exon start="50369" stop="50413"/>
              <exon start="50503" stop="50643"/>
              <exon start="51380" stop="51475"/>
              <exon start="51566" stop="51667"/>
              <exon start="54023" stop="54336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAGTGCTGCTGAGGATGAAGATGATTCTCATCCAAACTTGCTGCGAAGAACAACCATTGGAAGAG : GTCCTCCCGAGTCTGTATTTGACTGGACAAAGGAAATAGATTCTGATTTGGCAAACCAGAATGGGAGTAACCAAGTGTTCTCCAGAAAGTACTGGCGCTTACTTCAATGCCAAAATG : GCCTTCGCATTTTTGAGGAGCTTCTGGATGGCGATTTACTA : CCAAAAAGCTGTAGTAGAGCAATGAAGGCTGTTGGGGTTGTGGAGGCTAGTTGTGAAAATATATTTGAGCTTGTTATGAGCATGGATGCAACACGTTTTGA : GTGGGACTGTAGCTTCCAGTATGGTAGTTTAGTTGAGGAGGTAGATGGACACACAGCAATACTCTATCACAGACTTCAACTTGACTGGTTCCCTAC : GTTAGTATGGCCTCGTGATCTTTGCTATGTACGTTATTGGCGTCGAAATGATGATGGAAGTTATG : TTGTGTTATTTCGTTCCAGGGAGCATGAGAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA : GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG : GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG : GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG : CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG : ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA : GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA : GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG : GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA : ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG : GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATCGTGTTCTTAAAATTTGTTTCAGCTCAGAATGGAACTAAGTCTGTTTATAGACGTCGACTTCATTAAATTCTTTTTTTTTTCTGTTCTCTTTCGATTATCAGTAAGAGCAATG</gDNA_template>
            <first_frame> V  *  C  C  *  G  *  R  *  F  S  S  K  L  A  A  K  N  N  H  W  K  R :   S  S  R  V  C  I  *  L  D  K  G  N  R  F  *  F  G  K  P  E  W  E  *  P  S  V  L  Q  K  V  L  A  L  T  S  M  P  K  W :   P  S  H  F  *  G  A  S  G  W  R  F  T   : T  K  K  L  *  *  S  N  E  G  C  W  G  C  G  G  *  L  *  K  Y  I  *  A  C  Y  E  H  G  C  N  T  F  *  :  V  G  L  *  L  P  V  W  *  F  S  *  G  G  R  W  T  H  S  N  T  L  S  Q  T  S  T  *  L  V  P  Y  :  V  S  M  A  S  *  S  L  L  C  T  L  L  A  S  K  *  *  W  K  L  C :   C  V  I  S  F  Q  G  A  *  E  L  W  S  T  T  W  I  C  S  S  S  Y  *  E :   W  W  I  Q  Y  F  P  T  Q  T  Y  *  R  E  A  Q  N  T  S  A  T  S  Y  A  D  R  F  K  R  M  G  C  G  L  C  L  V  I  S  A  T  L  S  V  A  D  V  E  Q  C  G  W :   T  S  *  I  L  F  S  N  *  *  K  N  C  C  S  K  N  P  S  Y  G  *  Y  D  I  R  F  S  L  F  *  E  E  S  K  T  P  G  D  S  S  S  S  Y  S  F  I  G  S  N  T  S  C  K  *  K  C  F  N  D  G  *  V  L  *  *  G  G  R  F  P  R  G  *  S  R   : G  N  A  T  *  P  *  T  *  N  E  E  N  C :   T  R  R  R  T  F  G  S  N  *  F  F  H  L  F  G  *  P  S  T  *  *  P  R  *  W  S  *  L  L  E  N  I  *  W  K  *  L  Q  S  S  *  Q  E  L  L  L  *  *  I  K   : D  S  C  W  *  T  S  D  G  S  C  C  C  *  L  V  *  R  Y  K  T  N  G  P  C  C  *  T  S  W  L  C  S  T   : S  C  F  R  K  R  T  V  F  F  N  F  *  C  A   : S  S  W  I  N  T  L  Q  H  G  F  L  F  C  H  E  R  V  N  I  W  F  S  F  A  T  V  C  *  W  G  *  R  V  P  *  *  *  N  E  A  H  P  V  C  A  K   : G  L  M  D  C  A  S  E  C  R  K  Y  S  L  F  T  G  E  G  S  *  L  H  L  Y  P  R  S  Q  V  F  G   : N  *  C  *  Y  W  F  F  H  C  R  E  W  S  F  G  A  C  D  W  C  N  Y  E  P  S  S  *  H  G  F  S  C  T   : G  K  L  S  R  *  V  A  *  A  T  N  R  R  C  T  C  I  S  Y  R  T  L  S  C  C  C  T  K  I  G  A  *  Y  Y  R  V  G  Q  T  T  H  I  V  H  L  L  Q  K  L  I  L  E  T  Y  V  Y  I  D  V  V  P  F  Y  F  R  S  S  C  S  *  N  L  F  Q  L  R  M  E  L  S  L  F  I  D  V  D  F  I  K  F  F  F  F  S  V  L  F  R  L  S  V  R  A  M </first_frame>
            <second_frame>  F  S  A  A  E  D  E  D  D  S  H  P  N  L  L  R  R  T  T  I  G  R   : G  P  P  E  S  V  F  D  W  T  K  E  I  D  S  D  L  A  N  Q  N  G  S  N  Q  V  F  S  R  K  Y  W  R  L  L  Q  C  Q  N   : G  L  R  I  F  E  E  L  L  D  G  D  L  L  :  P  K  S  C  S  R  A  M  K  A  V  G  V  V  E  A  S  C  E  N  I  F  E  L  V  M  S  M  D  A  T  R  F  E :   W  D  C  S  F  Q  Y  G  S  L  V  E  E  V  D  G  H  T  A  I  L  Y  H  R  L  Q  L  D  W  F  P  T :   L  V  W  P  R  D  L  C  Y  V  R  Y  W  R  R  N  D  D  G  S  Y   : V  V  L  F  R  S  R  E  H  E  N  C  G  P  L  P  G  Y  V  R  A  H  I  E   : S  G  G  F  N  I  S  P  L  K  P  I  N  G  R  P  R  T  Q  V  Q  H  L  M  Q  I  D  L  K  G  W  G  V  G  Y  V  S  S  F  Q  Q  H  C  L  L  Q  M  L  N  S  V  A   : G  L  R  E  Y  F  S  Q  T  D  E  R  T  A  A  P  R  I  P  V  M  V  N  M  T  S  A  S  V  S  S  K  R  N  Q  K  L  Q  E  T  P  H  H  R  T  R  S  L  D  Q  I  R  A  A  N  R  N  A  S  M  M  D  E  Y  S  D  E  E  E  D  F  Q  G  A  D  Q  E  :  V  M  P  P  S  P  E  R  E  M  K  R  T   : A  L  E  E  E  P  L  D  Q  I  D  F  S  I  F  S  G  N  L  R  R  D  D  R  D  N  G  R  N  C  W  R  I  S  D  G  N  N  F  R  V  R  S  K  N  F  C  Y  D  K  S  K  :  I  P  A  G  K  P  L  M  D  L  V  A  A  D  W  F  K  D  T  K  R  M  D  H  V  A  R  R  P  G  C  A  A  Q  :  V  A  S  E  K  G  L  F  S  L  I  F  N  V  Q  :  V  P  G  S  T  H  Y  S  M  V  F  Y  F  V  M  K  E  L  T  S  G  S  L  L  Q  R  F  V  D  G  D  D  E  F  R  N  S  R  M  K  L  I  P  S  V  P  K  :  G  S  W  I  V  R  Q  S  V  G  S  T  P  C  L  L  G  K  A  V  D  C  T  Y  I  R  G  P  K  Y  L  E  :  I  D  V  D  I  G  S  S  T  V  A  N  G  V  L  G  L  V  I  G  V  I  T  S  L  V  V  D  M  A  F  L  V  Q  :  G  N  S  P  D  E  L  P  E  Q  L  I  G  A  V  R  A  S  H  I  E  L  S  A  A  V  V  P  K  L  E  P  D  T  T  E  *  V  K  P  H  T  *  F  T  F  F  R  S  *  F  L  K  H  T  Y  T  *  M  *  F  L  S  I  F  V  H  R  V  L  K  I  C  F  S  S  E  W  N  *  V  C  L  *  T  S  T  S  L  N  S  F  F  F  L  F  S  F  D  Y  Q  *  E  Q   </second_frame>
            <third_frame>   L  V  L  L  R  M  K  M  I  L  I  Q  T  C  C  E  E  Q  P  L  E  E  :  V  L  P  S  L  Y  L  T  G  Q  R  K  *  I  L  I  W  Q  T  R  M  G  V  T  K  C  S  P  E  S  T  G  A  Y  F  N  A  K  M  :  A  F  A  F  L  R  S  F  W  M  A  I  Y  Y :   Q  K  A  V  V  E  Q  *  R  L  L  G  L  W  R  L  V  V  K  I  Y  L  S  L  L  *  A  W  M  Q  H  V  L   : S  G  T  V  A  S  S  M  V  V  *  L  R  R  *  M  D  T  Q  Q  Y  S  I  T  D  F  N  L  T  G  S  L   : R  *  Y  G  L  V  I  F  A  M  Y  V  I  G  V  E  M  M  M  E  V  M  :  L  C  Y  F  V  P  G  S  M  R  I  V  V  H  Y  L  D  M  F  E  L  I  L  R  :  V  V  D  S  I  F  P  H  S  N  L  L  T  G  G  P  E  H  K  C  N  I  L  C  R  S  I  *  K  D  G  V  W  A  M  S  R  H  F  S  N  I  V  C  C  R  C  *  T  V  W  L  :  D  F  V  N  T  F  L  K  L  M  K  E  L  L  L  Q  E  S  Q  L  W  L  I  *  H  P  L  Q  S  L  L  R  G  I  K  N  S  R  R  L  L  I  I  V  L  V  H  W  I  K  Y  E  L  Q  I  E  M  L  Q  *  W  M  S  T  L  M  R  R  K  I  S  K  G  L  I  K  R :   *  C  H  L  A  L  N  V  K  *  R  E  L  :  H  S  K  K  N  L  W  I  K  L  I  F  P  S  F  R  V  T  F  D  V  M  T  A  I  M  V  V  T  A  G  E  Y  L  M  E  I  T  S  E  F  V  A  R  T  F  A  M  I  N  Q  R :   F  L  L  V  N  L  *  W  I  L  L  L  L  T  G  L  K  I  Q  N  E  W  T  M  L  L  D  V  L  V  V  Q  H  K :   L  L  Q  K  K  D  C  F  L  *  F  L  M  C  K :   F  L  D  Q  H  T  T  A  W  F  S  I  L  S  *  K  S  *  H  L  V  L  F  C  N  G  L  L  M  G  M  T  S  S  V  I  V  E  *  S  S  S  R  L  C  Q  R :   A  H  G  L  C  V  R  V  S  E  V  L  L  V  Y  W  G  R  Q  L  T  A  P  I  S  A  V  P  S  I  W  K :   L  M  L  I  L  V  L  P  L  S  R  M  E  F  W  G  L  *  L  V  *  L  R  A  *  *  L  T  W  L  F  L  Y  R :   E  T  L  P  M  S  C  L  S  N  *  *  A  L  Y  V  H  L  I  *  N  S  Q  L  L  L  Y  Q  N  W  S  L  I  L  Q  S  R  S  N  H  T  H  S  S  P  S  S  E  V  D  S  *  N  I  R  I  H  R  C  S  S  F  L  F  S  F  I  V  F  L  K  F  V  S  A  Q  N  G  T  K  S  V  Y  R  R  R  L  H  *  I  L  F  F  F  C  S  L  S  I  I  S  K  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45541" stop="45607"/>
                    <exon start="45690" stop="45806"/>
                    <exon start="45982" stop="46022"/>
                    <exon start="46123" stop="46223"/>
                    <exon start="46891" stop="46986"/>
                    <exon start="47386" stop="47450"/>
                    <exon start="47542" stop="47613"/>
                    <exon start="47755" stop="47910"/>
                    <exon start="48642" stop="48871"/>
                    <exon start="48962" stop="49001"/>
                    <exon start="49100" stop="49254"/>
                    <exon start="49352" stop="49453"/>
                    <exon start="50369" stop="50413"/>
                    <exon start="50503" stop="50643"/>
                    <exon start="51380" stop="51475"/>
                    <exon start="51566" stop="51667"/>
                    <exon start="54023" stop="54133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSAAEDEDDSHPNLLRRTTIGRGPPESVFDWTKEIDSDLANQNGSNQVFSRKYWRLLQCQNGLRIFEELLDGDLLPKSCSRAMKAVGVVEASCENIFELVMSMDATRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPTLVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPLPGYVRAHIESGGFNISPLKPINGRPRTQVQHLMQIDLKGWGVGYVSSFQQHCLLQMLNSVAGLREYFSQTDERTAAPRIPVMVNMTSASVSSKRNQKLQETPHHRTRSLDQIRAANRNASMMDEYSDEEEDFQGADQEVMPPSPEREMKRTALEEEPLDQIDFSIFSGNLRRDDRDNGRNCWRISDGNNFRVRSKNFCYDKSKIPAGKPLMDLVAADWFKDTKRMDHVARRPGCAAQVASEKGLFSLIFNVQVPGSTHYSMVFYFVMKELTSGSLLQRFVDGDDEFRNSRMKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCTYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITSLVVDMAFLVQGNSPDELPEQLIGAVRASHIELSAAVVPKLEPDTTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55674" PGL_stop="64262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55674" e_stop="55881"/>
            <exon e_start="56204" e_stop="56236"/>
            <exon e_start="57891" e_stop="58119"/>
            <exon e_start="58642" e_stop="58774"/>
            <exon e_start="63199" e_stop="64108"/>
            <exon e_start="64252" e_stop="64262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="0.928"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="55674" e_stop="55881" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56204" e_stop="56236" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57891" e_stop="58119" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.829">
            <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58642" e_stop="58774" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.964">
            <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424"/>
          </intron>
          <exon e_serial="5" e_score="0.928">
            <gDNA_exon_boundary e_start="63199" e_stop="64108" e_length="910"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="64109" i_stop="64251" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="0.636">
            <gDNA_exon_boundary e_start="64252" e_stop="64262" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55674" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58774"/>
              <exon start="63199" stop="63825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63250" stop="64108"/>
              <exon start="64252" stop="64262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566070" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG : ATGTTGAAGAGTTTTATCAACAATGTGACCCAG : AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG : GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG : GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGCATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAA : AAGGAAAATAT</gDNA_template>
            <first_frame> P  Q  N  F  H  F  P  P  L  P  S  L  H  S  L  S  L  S  K  L  S  L  S  K  L  S  L  S  S  A  K  P  F  L  C  L  M  M  D  G  A  Q  Q  Y  N  P  R  T  V  E  E  V  F  R  D  F  K  G  R  R  A  A  L  V  K  A  L  T  T   : D  V  E  E  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  F  P  S  E  S  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  A  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   R  R  L  F  N  M  I  N  D  L  P  T  I  F  E  V  V  S  G  T  A  K  K  Q  S  K  D  K  S  S  M  S  N  H  S  S  T  K  S  K  S  N  S  K  :  V  V  Q  R  G  S  E  S  Q  I  K  Y  S  R  P  Q  P  K  D  D  D  E  D  G  L  D  E  D  D  E  Q  G  E  T  L  C  G  A  C  G  E  N  Y  A  S  D  E  F  W  I  C  C  D  I  C  E  V  W  F  H  G  K  C  V  K  I  T  P  A  R  A  E  H  I  K  Q  Y  K  C  P  S  C  T  S  S  K  R  T  R  P  *  L  H  L  R  Y  *  G  L  S  F  V  K  S  *  K  L  L  R  S  F  R  G  M  R  S  G  F  L  M  G  S  S  S  M  P  Y  V  L  F  N  I  T  I  I  Y  Y  L  V  A  R  M  L  L  S  S  V  F  F  *  Y  V  V  L  *  M  M  *  V  A  S  L  N  *  S  L  C  R  L  K  L  L  C  H  D  C  S  N  L  K  *  L  S  L  H  C  *  G  K  P  F  F  S  V  M  *  C  *  E  D  A  V  L  P  Q  I  C  F  V  N  L  L  F  P  V  A  C  N  F  F  C  S  L  S  S  P  L  I  *  F  I  L  K  *  L  I  Q  F  S  A  R  S  I  S  C  L  R  G  F  G  K  G  L  Y  A  C  N  V  V  S  T  S  *  F  L  K  *  Q  V  *  L  C  I  *  L  R  Y  C  L  Y  I  F  W  F  S  I  S  C  V  V  F  V  L  K  F  N  *  F  G  F  T  L  K   : K  G  K  Y </first_frame>
            <second_frame>  P  K  I  F  I  F  P  L  S  L  P  S  I  L  S  L  C  L  S  F  L  S  L  N  F  L  S  H  Q  Q  S  H  F  C  V  S  *  W  M  E  L  S  S  T  I  L  E  L  L  K  K  C  L  E  I  L  R  V  E  E  L  H  L  S  K  P  L  L  L  :  M  L  K  S  F  I  N  N  V  T  Q  :  R  K  R  T  S  A  F  M  D  F  P  V  K  V  G  K  S  I  Y  Q  L  K  K  C  P  Q  S  F  L  S  L  L  W  A  *  T  S  P  E  M  A  C  K  R  R  T  G  S  P  W  L  L  C  I  V  M  H  G  Y  F  L  L  P  F  I  L  V  L  D  L  G  L  I  E  L  I   : G  E  G  C  S  I  *  *  M  I  S  L  Q  F  S  R  L  C  L  G  Q  P  R  N  N  Q  K  T  S  H  Q  C  Q  I  T  A  A  P  S  L  S  Q  T  Q  R :   W  Y  N  V  V  L  N  L  R  S  S  I  Q  D  H  N  Q  K  M  T  M  K  M  V  W  M  K  M  M  S  K  E  K  H  Y  V  V  L  V  V  K  T  M  H  L  M  N  S  G  S  A  V  T  Y  V  R  Y  G  S  M  G  S  V  L  K  S  L  L  P  G  L  S  I  S  S  S  T  S  A  H  L  A  P  A  A  R  E  H  A  L  D  C  T  C  V  I  E  V  Y  P  L  *  S  H  E  N  C  *  D  L  F  A  V  *  E  V  D  F  L  W  E  A  L  R  C  H  M  F  Y  S  T  L  Q  L  S  I  I  *  L  Q  E  C  C  C  L  A  S  F  S  S  M  S  C  C  E  *  C  R  L  P  L  *  I  S  R  C  V  G  *  S  Y  C  V  M  T  V  Q  I  S  S  S  C  L  C  T  V  E  G  S  H  F  S  Q  L  C  D  V  K  K  M  L  F  F  P  K  F  V  L  S  I  F  C  F  L  W  P  A  I  F  F  V  P  S  P  P  L  L  F  D  S  F  *  S  S  *  Y  S  S  V  H  E  A  S  R  V  Y  V  G  S  E  K  D  C  M  H  V  M  W  L  V  H  L  N  S  *  S  N  K  S  S  C  V  F  D  *  G  I  A  Y  I  F  F  G  F  L  S  H  V  L  C  L  F  *  S  S  T  N  L  D  L  R  L  K  :  K  E  N   </second_frame>
            <third_frame>   P  K  F  S  F  S  P  S  P  F  P  P  F  S  L  S  V  *  A  F  S  L  *  T  F  S  L  I  S  K  A  I  S  V  S  H  D  G  W  S  S  A  V  Q  S  S  N  C  *  R  S  V  *  R  F  *  G  S  K  S  C  T  C  Q  S  P  Y  Y  * :   C  *  R  V  L  S  T  M  *  P  R :   E  R  E  P  L  P  L  W  I  S  Q  *  K  L  G  S  Q  F  T  S  *  R  S  A  P  R  A  S  *  A  C  F  G  H  K  L  R  P  R  W  H  A  R  E  G  L  A  L  L  G  C  C  A  *  *  C  M  V  T  F  C  C  L  L  F  W  C  *  I  W  V  *  *  S  *  *  :  E  K  V  V  Q  Y  D  K  *  S  P  Y  N  F  R  G  C  V  W  D  S  Q  E  T  I  K  R  Q  V  I  N  V  K  S  Q  Q  H  Q  V  *  V  K  L  K   : G  G  T  T  W  F  *  I  S  D  Q  V  F  K  T  T  T  K  R  *  R  *  R  W  F  G  *  R  *  *  A  R  R  N  T  M  W  C  L  W  *  K  L  C  I  *  *  I  L  D  L  L  *  H  M  *  G  M  V  P  W  E  V  C  *  N  H  S  C  Q  G  *  A  Y  Q  A  V  Q  V  P  I  L  H  Q  Q  Q  E  N  T  P  L  I  A  P  A  L  L  R  F  I  L  C  E  V  M  K  T  V  K  I  F  S  R  Y  E  K  W  I  S  Y  G  K  L  F  D  A  I  C  S  I  Q  H  Y  N  Y  L  L  S  S  C  K  N  V  V  V  *  R  L  F  L  V  C  R  A  V  N  D  V  G  C  L  S  K  L  V  V  V  *  V  E  V  I  V  S  *  L  F  K  S  Q  V  V  V  S  A  L  L  R  E  A  I  F  L  S  Y  V  M  L  R  R  C  C  S  S  P  N  L  F  C  Q  S  F  V  S  C  G  L  Q  F  F  L  F  P  L  L  P  S  Y  L  I  H  S  E  V  A  D  T  V  Q  C  T  K  H  L  V  F  T  W  V  R  K  R  T  V  C  M  *  C  G  *  Y  I  L  I  L  E  V  T  S  L  A  V  Y  L  I  E  V  L  P  I  Y  F  L  V  F  Y  L  M  C  C  V  C  F  E  V  Q  L  I  W  I  Y  A  *  K :   R  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55674" stop="55881"/>
                    <exon start="56204" stop="56236"/>
                    <exon start="57891" stop="58119"/>
                    <exon start="58642" stop="58774"/>
                    <exon start="63199" stop="63471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQNFHFPPLPSLHSLSLSKLSLSKLSLSSAKPFLCLMMDGAQQYNPRTVEEVFRDFKGRRAALVKALTTDVEEFYQQCDPEKENLCLYGFPSESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRRRLFNMINDLPTIFEVVSGTAKKQSKDKSSMSNHSSTKSKSNSKVVQRGSESQIKYSRPQPKDDDEDGLDEDDEQGETLCGACGENYASDEFWICCDICEVWFHGKCVKITPARAEHIKQYKCPSCTSSKRTRP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63723" stop="63968"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKSQVVVSALLREAIFLSYVMLRRCCSSPNLFCQSFVSCGLQFFLFPLLPSYLIHSEVADTVQCTKHLVFTWVRKRTVCM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73943" PGL_stop="74540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73943" e_stop="74540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73943" e_stop="74540" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73943" stop="74540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAAGTTTTTATGAGAAAAAGGTATTTGCTTTACAGTGATTTCATGTGATTCTTGAAAGTTAGAGCTTTTAACAGGTTAATTCACATGACCCTTTTGTTGTTACCTATCTTTCTTGTGTTTTAAGGATTAAAGATTTGTGCCAAGTTTGGATTTTTGACTGATTAGCTATTTGGGGTTTTAGTAATTGTGTGGATGTAAGGATCTTTTGTGGCTATAGTTGATTGGTGGGTAGATAAGGAAGAGGGAAAGAAGAAAAAGTTGAATTTTTTGTAGAAAAAAGAGGGTTCTTGCTGTTGTGCTGTTGTTGTGTTCTAGCTGTAGTTAGTGGTGGGTAGATAAGGAAGAGGAAAAGAAAAAGAAAAAGCTAAGATTTTGAGGGAAAAAAGGGTGCTTTCTGTTTTTTTTTTTTTTTGTTAAACAGATCTGATTAGCAATTTCTGTTAAGTATCCTGATTAATGGGGCGTGGCGAAATGTAAAAGAATGTTCTTTTACCAGTTGATTCTCTTAGGCAATGGAAAATGGTCTGTTGAAGCTCATGGTAAGATTATTAGTGATTCTAAAGAGAGGTGATGAATTAGTTTAACAATGAAAGGT</gDNA_template>
            <first_frame> T  E  V  F  M  R  K  R  Y  L  L  Y  S  D  F  M  *  F  L  K  V  R  A  F  N  R  L  I  H  M  T  L  L  L  L  P  I  F  L  V  F  *  G  L  K  I  C  A  K  F  G  F  L  T  D  *  L  F  G  V  L  V  I  V  W  M  *  G  S  F  V  A  I  V  D  W  W  V  D  K  E  E  G  K  K  K  K  L  N  F  L  *  K  K  E  G  S  C  C  C  A  V  V  V  F  *  L  *  L  V  V  G  R  *  G  R  G  K  E  K  E  K  A  K  I  L  R  E  K  R  V  L  S  V  F  F  F  F  C  *  T  D  L  I  S  N  F  C  *  V  S  *  L  M  G  R  G  E  M  *  K  N  V  L  L  P  V  D  S  L  R  Q  W  K  M  V  C  *  S  S  W  *  D  Y  *  *  F  *  R  E  V  M  N  *  F  N  N  E  R  </first_frame>
            <second_frame>  L  K  F  L  *  E  K  G  I  C  F  T  V  I  S  C  D  S  *  K  L  E  L  L  T  G  *  F  T  *  P  F  C  C  Y  L  S  F  L  C  F  K  D  *  R  F  V  P  S  L  D  F  *  L  I  S  Y  L  G  F  *  *  L  C  G  C  K  D  L  L  W  L  *  L  I  G  G  *  I  R  K  R  E  R  R  K  S  *  I  F  C  R  K  K  R  V  L  A  V  V  L  L  L  C  S  S  C  S  *  W  W  V  D  K  E  E  E  K  K  K  K  K  L  R  F  *  G  K  K  G  C  F  L  F  F  F  F  F  V  K  Q  I  *  L  A  I  S  V  K  Y  P  D  *  W  G  V  A  K  C  K  R  M  F  F  Y  Q  L  I  L  L  G  N  G  K  W  S  V  E  A  H  G  K  I  I  S  D  S  K  E  R  *  *  I  S  L  T  M  K  G </second_frame>
            <third_frame>   *  S  F  Y  E  K  K  V  F  A  L  Q  *  F  H  V  I  L  E  S  *  S  F  *  Q  V  N  S  H  D  P  F  V  V  T  Y  L  S  C  V  L  R  I  K  D  L  C  Q  V  W  I  F  D  *  L  A  I  W  G  F  S  N  C  V  D  V  R  I  F  C  G  Y  S  *  L  V  G  R  *  G  R  G  K  E  E  K  V  E  F  F  V  E  K  R  G  F  L  L  L  C  C  C  C  V  L  A  V  V  S  G  G  *  I  R  K  R  K  R  K  R  K  S  *  D  F  E  G  K  K  G  A  F  C  F  F  F  F  L  L  N  R  S  D  *  Q  F  L  L  S  I  L  I  N  G  A  W  R  N  V  K  E  C  S  F  T  S  *  F  S  *  A  M  E  N  G  L  L  K  L  M  V  R  L  L  V  I  L  K  R  G  D  E  L  V  *  Q  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0216D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="74813" PGL_stop="75626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74813" e_stop="75444"/>
            <exon e_start="75540" e_stop="75626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="74813" e_stop="75444" e_length="632"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75445" i_stop="75539" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75540" e_stop="75626" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74813" stop="75444"/>
              <exon start="75540" stop="75626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG : GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGATGAATCTCAGTGATGAAAGTATT</gDNA_template>
            <first_frame> L  Q  H  H  L  C  L  K  R  A  E  V  K  G  L  C  R  L  M  *  Y  L  K  M  K  A  T  G  L  L  V  M  L  L  L  G  K  V  R  M  M  I  P  Y  H  W  R  V  I  K  F  S  I  I  R  V  P  C  Q  W  *  A  I  V  V  V  Y  A  L  M  I  L  *  A  L  R  *  R  L  T  *  K  V  R  I  S  W  I  L  R  K  A  S  A  M  M  N  L  L  V  R  L  G  F  W  L  S  Q  M  L  R  I  L  *  L  D  P  R  Q  F  L  R  D  L  R  S  R  S  L  I  K  I  *  M  Q  Q  S  A  A  V  F  L  K  W  T  T  Y  P  Y  G  D  I  H  L  S  V  E  G  D  Q  K  W  K  T  H  S  Q  L  F  L  D  S  *  K  F  L  Y  R  C  *  L  V  I  A  C  L  M  D  C  L  D  A  *  V  I  *  R  L  I  S  L  E  F  M  M  A  M  V  V  L  R :   W  Q  I  T  A  E  T  G  F  M  L  Y  W  L  R  S  W  K  L  L  *  *  I  S  V  M  K  V   </first_frame>
            <second_frame>  Y  S  I  I  C  A  *  R  E  Q  K  *  R  D  Y  V  A  *  C  D  I  *  K  *  K  Q  L  D  C  W  *  C  C  C  *  G  K  *  G  *  *  F  L  I  T  G  G  *  S  N  S  R  *  F  V  F  P  V  S  G  E  R  L  *  *  F  M  R  *  *  F  Y  R  L  *  D  S  V  *  H  R  R  S  G  F  R  G  F  S  E  K  H  Q  P  *  *  T  Y  W  *  D  W  G  F  G  *  V  R  C  *  G  Y  F  D  *  T  R  G  S  S  *  E  T  *  G  A  D  H  *  *  R  F  E  C  N  S  Q  P  Q  C  F  *  S  G  L  H  T  L  M  G  I  Y  I  Y  L  W  K  E  T  R  N  G  R  R  I  R  N  C  S  *  I  H  E  N  S  S  T  D  V  N  W  *  S  R  A  *  W  T  V  *  T  L  E  S  F  D  D  S  F  L  W  S  L  *  W  P  W  W  F  S   : G  G  K  L  L  P  R  P  D  S  C  C  I  G  *  G  V  G  N  F  Y  D  E  S  Q  *  *  K  Y  </second_frame>
            <third_frame>   T  A  S  S  V  P  E  E  S  R  S  E  G  T  M  S  L  D  V  I  S  E  N  E  S  N  W  I  A  G  D  A  V  V  R  E  S  E  D  D  D  S  L  S  L  E  G  D  Q  I  L  D  N  S  C  S  L  S  V  V  S  D  C  S  S  L  C  A  D  D  F  I  G  F  E  I  A  S  D  I  E  G  Q  D  F  V  D  S  Q  K  S  I  S  H  D  E  L  I  G  K  T  G  V  L  V  E  S  D  V  E  D  T  L  I  R  P  A  A  V  P  E  R  L  E  E  Q  I  T  D  K  D  L  N  A  T  V  S  R  S  V  F  E  V  D  Y  I  P  L  W  G  Y  T  S  I  C  G  R  R  P  E  M  E  D  A  F  A  T  V  P  R  F  M  K  I  P  L  P  M  L  I  G  D  R  V  L  D  G  L  S  R  R  L  S  H  L  T  T  H  F  F  G  V  Y  D  G  H  G  G  S  Q  :  V  A  N  Y  C  R  D  R  I  H  A  V  L  A  E  E  L  E  T  F  M  M  N  L  S  D  E  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74815" stop="75444"/>
                    <exon start="75540" stop="75626"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TASSVPEESRSEGTMSLDVISENESNWIAGDAVVRESEDDDSLSLEGDQILDNSCSLSVVSDCSSLCADDFIGFEIASDIEGQDFVDSQKSISHDELIGKTGVLVESDVEDTLIRPAAVPERLEEQITDKDLNATVSRSVFEVDYIPLWGYTSICGRRPEMEDAFATVPRFMKIPLPMLIGDRVLDGLSRRLSHLTTHFFGVYDGHGGSQVANYCRDRIHAVLAEELETFMMNLSDESI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77223" PGL_stop="77455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77223" e_stop="77455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="77223" e_stop="77455" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77223" stop="77455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTAAGTCGTCTATTTATGTGTTACATTTTTTTCTTTACCTTGGGATAAATATAATGGCTATTATTGGAGTAGGTTTCTATATGTATTTTAGTGAATGTTCCATTATGTATGTAATTTTCTTTATTTAGCTATTTGAAGTAGCAAAAACTACTACACTATAATCAAATGTAATATGGTCCTTATGCCTCCATAGTTAAAAGGCTCTATGTAGGTATTTTAATCTATTGTTTG</gDNA_template>
            <first_frame> R  *  V  V  Y  L  C  V  T  F  F  S  L  P  W  D  K  Y  N  G  Y  Y  W  S  R  F  L  Y  V  F  *  *  M  F  H  Y  V  C  N  F  L  Y  L  A  I  *  S  S  K  N  Y  Y  T  I  I  K  C  N  M  V  L  M  P  P  *  L  K  G  S  M  *  V  F  *  S  I  V   </first_frame>
            <second_frame>  G  K  S  S  I  Y  V  L  H  F  F  L  Y  L  G  I  N  I  M  A  I  I  G  V  G  F  Y  M  Y  F  S  E  C  S  I  M  Y  V  I  F  F  I  *  L  F  E  V  A  K  T  T  T  L  *  S  N  V  I  W  S  L  C  L  H  S  *  K  A  L  C  R  Y  F  N  L  L  F  </second_frame>
            <third_frame>   V  S  R  L  F  M  C  Y  I  F  F  F  T  L  G  *  I  *  W  L  L  L  E  *  V  S  I  C  I  L  V  N  V  P  L  C  M  *  F  S  L  F  S  Y  L  K  *  Q  K  L  L  H  Y  N  Q  M  *  Y  G  P  Y  A  S  I  V  K  R  L  Y  V  G  I  L  I  Y  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0216D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78438" PGL_stop="80816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78438" e_stop="78715"/>
            <exon e_start="79892" e_stop="79977"/>
            <exon e_start="80428" e_stop="80549"/>
            <exon e_start="80628" e_stop="80816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78438" e_stop="78715" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="79892" e_stop="79977" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80428" e_stop="80549" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80628" e_stop="80816" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78438" stop="78715"/>
              <exon start="79892" stop="79977"/>
              <exon start="80428" stop="80549"/>
              <exon start="80628" stop="80816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG : GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</gDNA_template>
            <first_frame> S  N  V  K  E  K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  C  H  Q  H  C  S  W  C  I  V  *  E  C  S  W  Q  :  E  I  L  D  S  *  C  A  N  I  G  K  *  G  C  T  R  V  L  F  C  L  R  S  F  K  R  Q  A  T  I  C  P  T  S  S  K  I  S  S  F  L  C  T  S  K  T  T  I  F  V  S  M  V  S  T  *  V  K  *  L  W  I </first_frame>
            <second_frame>  Q  T  *  K  K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K   : P  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S  V  T  N  I  V  L  G  A  S  S  R  S  A  L  G  R :   K  Y  W  T  H  D  V  P  T  L  V  N  K  A  A  P  E  F  C  S  V  Y  V  V  S  K  G  K  Q  Q  S  V  R  P  A  A  K  S  L  P  S  C  V  P  A  R  Q  P  S  S  S  A  W  S  A  P  R  S  S  N  S  G   </second_frame>
            <third_frame>   K  R  E  R  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T  V  S  P  T  L  F  L  V  H  R  L  G  V  L  L  A   : G  N  I  G  L  M  M  C  Q  H  W  *  I  R  L  H  Q  S  F  V  L  S  T  *  F  Q  K  A  S  N  N  L  S  D  Q  Q  Q  N  L  F  L  L  V  Y  Q  Q  D  N  H  L  R  Q  H  G  Q  H  L  G  Q  V  T  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78547" stop="78715"/>
                    <exon start="79892" stop="79977"/>
                    <exon start="80428" stop="80549"/>
                    <exon start="80628" stop="80814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKPTLDSNGGLSDEATQNVFTPFKAYSARKRIVVKEIVIENTEASKGLLEYINSNSVTNIVLGASSRSALGRKYWTHDVPTLVNKAAPEFCSVYVVSKGKQQSVRPAAKSLPSCVPARQPSSSAWSAPRSSNSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78451" e_stop="78719"/>
            <exon e_start="79892" e_stop="79977"/>
            <exon e_start="80418" e_stop="80502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.959" e_score="0.981"/>
          <exon-intron don_prob="0.976" acc_prob="0.740" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78451" e_stop="78719" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.959">
            <gDNA_intron_boundary i_start="78720" i_stop="79891" i_length="1172"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="79892" e_stop="79977" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.740">
            <gDNA_intron_boundary i_start="79978" i_stop="80417" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80418" e_stop="80502" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78451" stop="78719"/>
              <exon start="79892" stop="79977"/>
              <exon start="80418" stop="80502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAG : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</gDNA_template>
            <first_frame> K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K  R  S :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : G  Y  C  R  *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T   </first_frame>
            <second_frame>  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  V   : A  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  V  I  A  D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  </second_frame>
            <third_frame>   K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A  *  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   L  L  Q  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78547" stop="78719"/>
                    <exon start="79892" stop="79922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKRSYFRFKWRFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81974" PGL_stop="83345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81974" e_stop="82006"/>
            <exon e_start="82479" e_stop="82907"/>
            <exon e_start="83314" e_stop="83345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.229" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81974" e_stop="82006" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.229" acc_prob="0.820">
            <gDNA_intron_boundary i_start="82007" i_stop="82478" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82479" e_stop="82907" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="82908" i_stop="83313" i_length="406"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83314" e_stop="83345" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81974" stop="82006"/>
              <exon start="82479" stop="82907"/>
              <exon start="83314" stop="83345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTGCAAAGAAGCGGTCGTGGCCAACCAAGCG : GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG : GTTGAGGTCCTCAGTCTCATTAGGCATCCAAA</gDNA_template>
            <first_frame> A  C  K  E  A  V  V  A  N  Q  A  :  A  D  E  L  N  K  W  K  I  E  E  A  R  K  F  E  Q  A  R  F  A  E  E  A  A  L  A  I  A  E  T  E  K  A  K  C  R  A  A  I  E  A  A  K  K  A  Q  K  M  A  E  I  E  A  Q  R  R  K  Y  A  E  L  K  A  K  R  E  A  E  K  K  K  Q  A  I  N  V  R  S  Q  N  D  I  R  Y  R  K  Y  T  I  E  E  I  E  A  A  T  K  K  F  S  N  A  Q  K  I  G  E  G  G  Y  G  P  V  F  K  G  K  L  D  H  T  P  V  A  I  K  V  L  S  P  D  A  A  Q  G  K  K  Q  F  Q  Q  E  :  V  E  V  L  S  L  I  R  H  P   </first_frame>
            <second_frame>  L  A  K  K  R  S  W  P  T  K  R :   L  M  S  L  I  N  G  K  L  K  K  L  A  S  S  N  K  R  V  L  L  K  R  R  L  L  Q  L  L  R  P  K  R  R  N  A  E  L  L  S  K  L  L  R  K  H  K  R  W  L  K  *  K  R  K  E  G  S  M  Q  S  *  K  L  S  E  R  Q  K  K  R  N  K  Q  L  M  F  D  L  R  M  I  Y  V  I  G  S  I  Q  *  K  R  L  R  Q  P  P  K  S  S  Q  M  H  K  K  L  E  K  V  D  M  D  L  F  L  R  V  N  *  I  T  H  L  L  P  L  K  F  *  V  L  M  L  H  K  G  R  N  S  S  N  K  R :   L  R  S  S  V  S  L  G  I  Q  </second_frame>
            <third_frame>   L  Q  R  S  G  R  G  Q  P  S   : G  *  *  A  *  *  M  E  N  *  R  S  S  Q  V  R  T  S  A  F  C  *  R  G  G  S  C  N  C  *  D  R  K  G  E  M  Q  S  C  Y  R  S  C  *  E  S  T  K  D  G  *  N  R  S  A  K  K  E  V  C  R  V  E  S  *  A  R  G  R  K  K  E  T  S  N  *  C  S  I  S  E  *  Y  T  L  *  E  V  Y  N  R  R  D  *  G  S  H  Q  K  V  L  K  C  T  K  N  W  R  R  W  I  W  T  C  F  *  G  *  T  R  S  H  T  C  C  H  *  S  S  E  S  *  C  C  T  R  E  E  T  V  P  T  R   : G  *  G  P  Q  S  H  *  A  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81974" stop="82006"/>
                    <exon start="82479" stop="82907"/>
                    <exon start="83314" stop="83343"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACKEAVVANQAADELNKWKIEEARKFEQARFAEEAALAIAETEKAKCRAAIEAAKKAQKMAEIEAQRRKYAELKAKREAEKKKQAINVRSQNDIRYRKYTIEEIEAATKKFSNAQKIGEGGYGPVFKGKLDHTPVAIKVLSPDAAQGKKQFQQEVEVLSLIRHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86998" PGL_stop="90781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86998" e_stop="87110"/>
            <exon e_start="88541" e_stop="88601"/>
            <exon e_start="88778" e_stop="88884"/>
            <exon e_start="88973" e_stop="89403"/>
            <exon e_start="90547" e_stop="90781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.396" e_score="0.956"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.807" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="86998" e_stop="87110" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.396">
            <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88541" e_stop="88601" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88778" e_stop="88884" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.033">
            <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88973" e_stop="89403" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.807">
            <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="90547" e_stop="90781" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86998" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA : TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT : GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG : GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCC</gDNA_template>
            <first_frame> F  L  N  S  A  A  *  I  R  G  V  F  V  K  L  Q  S  L  K  T  L  I  L  K  S  F  R  S  F  F  D  K  L  Q  I  T  I  N :   H  G  S  R  R  F  S  V  *  C  S  S  I  R  C  K  N  D  R  T  :  A  W  Y  *  T  T  G  I  L  H  I  I  *  *  G  S  R  Q  F  *  C  H  G  F  A  R  K  S  P  E  G  H  L  C  L  W :   F  *  E  A  I  C  Y  S  A  K  G  H  C  S  F  L  Q  G  P  *  C  H  P  A  G  T  I  W  Y  W  K  D  G  N  F  L  L  W  N  S  P  A  A  *  L  Q  F  S  *  V  S  G  S  G  S  C  T  N  P  *  A  C  T  T  D  *  E  G  Y  E  S  T  W  *  L  P  G  C  E  G  S  C  L  C  W  G  Y  Q  C  P  *  G  S  A  H  P  S  E  R  C  S  C  C  G  W  Y  S  R  P  C  L  *  H  V  A  Q  A  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  R  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H   </first_frame>
            <second_frame>  S  S  T  P  R  R  R  S  E  E  F  L  *  N  C  S  L  *  K  P  *  F  S  N  L  S  D  L  S  L  T  N  F  K  S  P  S   : I  M  A  A  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  E  F  F  T  S  Y  D  E  V  H  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  I  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  </second_frame>
            <third_frame>   P  Q  L  R  G  V  D  P  R  S  F  C  K  T  A  V  F  E  N  P  N  S  Q  I  F  Q  I  F  L  *  Q  T  S  N  H  H  Q  :  S  W  Q  Q  K  V  L  S  L  M  L  V  N  S  M  Q  K  *  Q  N   : C  L  V  L  N  N  R  N  S  S  H  H  M  M  R  F  T  T  V  L  M  P  W  V  C  K  K  I  S  *  G  A  S  M  P  M  :  V  L  R  S  H  L  L  F  S  K  G  A  L  F  L  F  A  R  A  L  M  S  S  S  R  H  N  L  V  L  E  R  R  Q  L  S  A  L  E  F  S  S  S  L  I  T  V  *  L  S  V  R  L  W  F  L  H  Q  P  V  S  L  H  N  R  L  R  R  L  *  E  H  L  V  T  T  W  V  *  R  F  M  L  V  L  G  V  P  V  S  V  R  I  S  A  S  F  R  A  V  F  M  L  W  L  V  L  Q  A  V  S  L  T  C  C  A  G  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  T  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87062" stop="87110"/>
                    <exon start="88541" stop="88601"/>
                    <exon start="88778" stop="88884"/>
                    <exon start="88973" stop="89403"/>
                    <exon start="90547" stop="90780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNLSDLSLTNFKSPSIMAAEGSQFDARQFDAKMTELLGTEQQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="91442" PGL_stop="90751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91442" e_stop="90751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="91442" e_stop="90751" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91442" stop="90751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATGATGATATCTCTTGTGTTCTGATCCATGTCTCCATGAGTTGCAGATACTGTGTGGTCACGTCCACGCATTTTATCAGTGAGCCAGTCAACCTTTCGCCTAGTGTTAACAAAGATGACGCTCTGGGTGATGGCCAAGGTCTCGTAAAGATCACA</gDNA_template>
            <first_frame> R  *  S  N  *  K  L  Y  L  P  *  G  N  R  S  I  K  Q  F  K  Q  H  Q  I  Q  S  Y  L  D  T  L  K  V  *  N  D  K  P  N  K  I  C  K  K  K  K  R  F  H  L  N  Q  E  R  N  W  C  C  G  K  P  W  L  P  A  F  P  N  S  K  S  S  T  N  *  Y  *  I  *  E  *  I  Y  Q  K  S  P  *  R  R  S  A  T  L  A  G  S  S  S  I  T  T  L  *  N  F  C  M  S  K  S  I  L  S  S  S  L  V  T  K  L  I  A  T  P  F  L  P  N  R  P  L  R  P  I  R  C  R  *  F  S  G  *  V  G  R  S  *  L  I  T  R  E  T  C  W  T  S  I  P  R  A  R  R  S  V  V  I  S  T  R  D  E  P  D  R  N  S  L  M  M  I  S  L  V  F  *  S  M  S  P  *  V  A  D  T  V  W  S  R  P  R  I  L  S  V  S  Q  S  T  F  R  L  V  L  T  K  M  T  L  W  V  M  A  K  V  S  *  R  S   </first_frame>
            <second_frame>  D  N  P  T  K  S  F  T  F  H  R  E  I  D  Q  L  N  N  S  N  N  T  K  Y  K  V  I  W  I  L  *  R  Y  K  M  T  N  Q  T  K  F  A  K  K  K  K  G  F  I  *  I  R  K  G  T  G  A  V  A  N  H  G  Y  Q  H  F  L  I  P  S  L  V  Q  T  D  T  K  S  K  N  K  Y  T  K  N  R  L  R  G  D  Q  Q  H  W  L  G  A  P  Q  L  R  R  C  K  T  S  V  C  Q  K  A  S  F  H  H  P  W  *  Q  S  *  *  Q  H  P  S  F  Q  I  V  H  Y  D  Q  Y  D  A  G  S  F  L  V  E  L  A  G  H  S  *  *  Q  G  R  L  V  G  H  Q  Y  H  E  Q  G  D  R  L  *  *  A  H  E  M  S  Q  I  G  T  P  S  *  *  Y  L  L  C  S  D  P  C  L  H  E  L  Q  I  L  C  G  H  V  H  A  F  Y  Q  *  A  S  Q  P  F  A  *  C  *  Q  R  *  R  S  G  *  W  P  R  S  R  K  D  H  </second_frame>
            <third_frame>   I  I  Q  L  K  A  L  P  S  I  G  K  *  I  N  *  T  I  Q  T  T  P  N  T  K  L  F  G  Y  F  K  G  I  K  *  Q  T  K  Q  N  L  Q  K  K  K  K  V  S  F  E  S  G  K  E  L  V  L  W  Q  T  M  A  T  S  I  S  *  F  Q  V  *  Y  K  L  I  L  N  L  R  I  N  I  P  K  I  A  L  E  E  I  S  N  I  G  W  E  L  L  N  Y  D  V  V  K  L  L  Y  V  K  K  H  P  F  I  I  L  G  D  K  V  D  S  N  T  L  P  S  K  S  S  T  T  T  N  T  M  Q  V  V  F  W  L  S  W  Q  V  I  V  N  N  K  G  D  L  L  D  I  N  T  T  S  K  E  I  G  C  D  K  H  T  R  *  A  R  S  E  L  P  H  D  D  I  S  C  V  L  I  H  V  S  M  S  C  R  Y  C  V  V  T  S  T  H  F  I  S  E  P  V  N  L  S  P  S  V  N  K  D  D  A  L  G  D  G  Q  G  L  V  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91227" stop="90925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILNLRINIPKIALEEISNIGWELLNYDVVKLLYVKKHPFIILGDKVDSNTLPSKSSTTTNTMQVVFWLSWQVIVNNKGDLLDINTTSKEIGCDKHTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="93124" PGL_stop="98095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93124" e_stop="93278"/>
            <exon e_start="95749" e_stop="95817"/>
            <exon e_start="95943" e_stop="96049"/>
            <exon e_start="96138" e_stop="96568"/>
            <exon e_start="97250" e_stop="98095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="93124" e_stop="93278" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95749" e_stop="95817" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95943" e_stop="96049" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96138" e_stop="96568" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97250" e_stop="98095" e_length="846"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93124" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="98095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCT</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  Y  A  A  *  I  R  G  V  F  G  K  K  L  Q  S  L  Q  T  L  I  L  K  N  P  L  F  L  K  S  S  D  L  S  L  T  I  F  L  L  A  T  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  T  T  R  R  R  S  E  E  F  L  E  K  S  C  S  L  Y  K  P  *  F  S  R  I  P  F  F  S  N  L  Q  I  S  L  *  Q  S  S  C  *  L  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  E  L  R  G  V  D  P  R  S  F  W  K  K  A  A  V  F  T  N  P  N  S  Q  E  S  P  F  S  Q  I  F  R  S  L  F  N  N  L  L  V  S  Y  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93166" stop="93278"/>
                    <exon start="95749" stop="95817"/>
                    <exon start="95943" stop="96049"/>
                    <exon start="96138" stop="96568"/>
                    <exon start="97250" stop="97885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1353</number_coding_nucleotides>
                  <number_encoded_amino_acids>451</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRGVFGKKLQSLQTLILKNPLFLKSSDLSLTIFLLATSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96402" e_stop="96568"/>
            <exon e_start="97250" e_stop="97503"/>
            <exon e_start="97648" e_stop="97752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="96402" e_stop="96568" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97250" e_stop="97503" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97504" i_stop="97647" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97648" e_stop="97752" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96402" stop="96568"/>
              <exon start="97250" stop="97503"/>
              <exon start="97648" stop="97752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAA : CACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAG</gDNA_template>
            <first_frame> V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S   : T  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  </first_frame>
            <second_frame>  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  :  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  * </second_frame>
            <third_frame>   V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N :   T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96404" stop="96568"/>
                    <exon start="97250" stop="97503"/>
                    <exon start="97648" stop="97750"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="100958" PGL_stop="99599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100958" e_stop="99599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="100958" e_stop="99599" e_length="1360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100958" stop="99599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTCATTTTTTCTCTCCAAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTTGGTGAAATATAGTGTTTGATATAATTATAATATACC</gDNA_template>
            <first_frame> K  L  I  F  S  L  Q  K  W  L  T  E  F  T  L  Q  L  S  Q  M  A  T  L  P  I  L  P  V  P  L  R  R  P  S  I  P  K  P  P  R  S  R  R  N  F  L  L  R  R  R  R  T  K  C  T  T  R  I  A  S  L  T  D  Q  L  Q  L  P  T  T  D  T  I  A  A  V  A  P  A  A  G  A  S  A  S  V  V  S  G  H  S  S  S  S  A  P  S  S  S  S  P  Q  S  P  A  P  V  S  T  S  Y  S  V  Q  N  L  R  H  S  P  F  P  H  S  K  S  S  N  S  N  S  P  L  P  P  T  T  L  H  T  S  P  L  S  S  I  S  H  S  P  L  K  T  L  T  K  S  *  F  T  V  T  I  Q  F  P  *  L  *  T  R  I  Q  F  Y  *  L  M  D  R  S  Q  D  S  T  A  V  L  I  T  S  Q  S  F  T  Q  L  Y  Q  W  R  L  K  C  S  M  R  I  Q  F  H  R  *  N  Q  I  *  K  E  K  M  D  Y  R  *  R  S  C  W  I  Q  W  C  *  R  K  W  I  N  *  K  V  R  K  S  G  S  E  L  L  V  T  E  S  M  E  E  F  R  R  G  K  L  R  R  W  L  Q  L  Q  M  L  N  V  R  L  I  Y  V  *  R  S  *  N  G  P  S  K  F  I  F  S  G  R  A  K  G  E  K  H  I  *  I  I  S  M  N  Y  L  S  V  W  R  S  F  F  I  *  S  M  I  K  Y  L  S  N  H  T  L  T  I  R  F  H  F  F  L  P  *  Y  G  N  N  S  G  R  K  R  E  W  L  *  L  T  Y  V  L  I  N  N  W  L  *  F  G  *  K  K  Q  T  R  D  N  L  D  R  K  F  K  K  S  R  *  L  N  V  V  F  F  F  L  L  F  N  L  F  F  V  V  F  I  F  I  Y  Q  L  F  A  *  F  L  Q  F  I  H  N  N  I  I  L  Y  Y  L  F  S  R  D  E  A  N  *  G  G  K  W  F  Y  V  D  F  F  W  *  N  I  V  F  D  I  I  I  I  Y  </first_frame>
            <second_frame>  S  S  F  F  L  S  K  N  G  *  Q  S  S  P  F  S  *  A  K  W  Q  R  C  Q  Y  Y  R  C  R  C  G  G  R  Q  S  Q  S  R  R  E  A  A  A  I  S  S  S  G  G  E  E  P  N  V  Q  P  E  S  H  P  L  P  T  N  S  N  C  L  P  P  T  Q  S  P  P  L  H  L  P  P  V  L  L  L  L  L  F  L  V  T  P  L  H  L  H  R  P  P  P  R  H  N  R  R  R  R  F  L  L  P  I  P  S  K  T  S  G  I  L  R  F  L  T  Q  N  H  P  I  Q  T  H  H  Y  L  R  R  H  Y  T  P  H  R  *  A  Q  S  H  T  L  H  *  K  P  *  Q  K  A  D  L  Q  L  R  S  N  F  L  N  C  K  L  E  F  S  S  T  S  *  W  I  V  H  R  I  Q  Q  R  S  *  *  H  H  N  H  S  L  N  S  I  N  G  V  S  S  A  R  C  G  F  N  F  I  V  E  I  R  S  E  K  K  K  W  I  T  D  E  D  L  V  G  Y  N  G  A  S  E  N  G  *  I  E  K  *  G  S  R  D  Q  S  Y  L  *  R  N  P  W  K  N  S  D  G  E  N  S  G  G  G  F  N  Y  K  C  *  M  *  G  *  F  T  Y  E  D  L  K  M  D  L  L  N  S  F  F  R  D  E  R  R  A  K  N  T  S  K  L  S  R  *  I  I  Y  R  C  G  G  P  F  L  F  E  V  *  S  N  I  Y  R  I  T  R  *  P  Y  V  F  T  F  F  Y  L  N  T  V  I  I  Q  V  E  N  V  N  G  Y  S  L  R  M  F  *  *  I  I  G  Y  N  S  D  R  K  S  K  H  V  I  I  W  I  E  N  S  K  N  R  D  S  *  M  *  F  F  F  F  Y  S  L  T  Y  F  S  L  F  L  F  L  F  I  N  Y  L  L  D  F  C  N  L  F  I  I  I  L  Y  Y  T  I  Y  L  V  E  M  R  Q  I  E  G  E  N  G  F  M  *  I  F  F  G  E  I  *  C  L  I  *  L  *  Y  T </second_frame>
            <third_frame>   A  H  F  F  S  P  K  M  A  D  R  V  H  P  S  A  K  P  N  G  N  A  A  N  I  T  G  A  A  A  A  A  V  N  P  K  A  A  A  K  P  P  Q  F  P  P  P  A  A  K  N  Q  M  Y  N  P  N  R  I  P  Y  R  P  T  P  T  A  Y  H  R  H  N  R  R  R  C  T  C  R  R  C  F  C  F  C  C  F  W  S  L  L  F  I  C  T  V  L  L  L  A  T  I  A  G  A  G  F  Y  F  L  F  R  P  K  P  P  A  F  S  V  S  S  L  K  I  I  Q  F  K  L  T  T  T  S  D  D  T  T  H  L  T  V  K  L  N  L  T  L  S  T  K  N  P  N  K  K  L  I  Y  S  Y  D  P  I  S  L  T  V  N  S  N  S  V  L  L  A  N  G  S  F  T  G  F  N  S  G  P  N  N  I  T  I  I  H  S  T  L  S  M  A  S  Q  V  L  D  A  D  S  I  S  S  L  K  S  D  L  K  R  K  N  G  L  P  M  K  I  L  L  D  T  M  V  L  A  K  M  D  K  L  K  S  K  E  V  G  I  R  V  T  C  D  G  I  H  G  R  I  P  T  G  K  T  P  A  V  A  S  T  T  N  A  K  C  K  A  D  L  R  M  K  I  L  K  W  T  F  *  I  H  F  F  G  T  S  E  G  R  K  T  H  L  N  Y  L  D  E  L  F  I  G  V  E  V  L  F  Y  L  K  Y  D  Q  I  F  I  E  S  H  V  N  H  T  F  S  L  F  S  T  L  I  R  *  *  F  R  *  K  T  *  M  A  I  A  Y  V  C  F  D  K  *  L  V  I  I  R  I  E  K  A  N  T  *  *  F  G  *  K  I  Q  K  I  E  I  V  K  C  S  F  F  F  F  T  L  *  L  I  F  R  C  F  Y  F  Y  L  S  I  I  C  L  I  F  A  I  Y  S  *  *  Y  Y  T  I  L  F  I  *  *  R  *  G  K  L  R  G  K  M  V  L  C  R  F  F  L  V  K  Y  S  V  *  Y  N  Y  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100956" stop="100096"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHFFSPKMADRVHPSAKPNGNAANITGAAAAAVNPKAAAKPPQFPPPAAKNQMYNPNRIPYRPTPTAYHRHNRRRCTCRRCFCFCCFWSLLFICTVLLLATIAGAGFYFLFRPKPPAFSVSSLKIIQFKLTTTSDDTTHLTVKLNLTLSTKNPNKKLIYSYDPISLTVNSNSVLLANGSFTGFNSGPNNITIIHSTLSMASQVLDADSISSLKSDLKRKNGLPMKILLDTMVLAKMDKLKSKEVGIRVTCDGIHGRIPTGKTPAVASTTNAKCKADLRMKILKWTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="109147" PGL_stop="115026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109147" e_stop="109552"/>
            <exon e_start="110384" e_stop="110652"/>
            <exon e_start="110786" e_stop="110878"/>
            <exon e_start="110966" e_stop="111037"/>
            <exon e_start="111158" e_stop="111274"/>
            <exon e_start="113712" e_stop="115026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="0.990"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="109147" e_stop="109552" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110384" e_stop="110652" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110786" e_stop="110878" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110966" e_stop="111037" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111158" e_stop="111274" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="113712" e_stop="115026" e_length="1315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109147" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111037"/>
              <exon start="111158" stop="111274"/>
              <exon start="113712" stop="115026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTCTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC : ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG : GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG : GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG : GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG : AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> S  F  S  L  Q  P  L  L  S  L  G  F  R  K  P  Y  R  R  C  S  P  F  T  P  N  L  S  K  S  K  A  T  M  A  E  E  A  Q  Y  G  A  P  D  A  G  N  N  K  R  K  Y  D  D  Q  A  A  P  S  P  G  P  R  R  P  T  G  F  S  A  P  I  A  S  L  S  S  P  D  G  A  A  P  P  S  S  Y  N  N  V  P  P  P  M  D  D  F  Q  L  A  K  Q  K  A  Q  E  I  A  A  R  L  L  N  S  A  E  A  K  K  P  R  V  D  N  N  G  G  G  A  G  G  Y  D  S  Y  E   : H  K  P  I  V  T  P  S  V  T  S  S  Y  G  Y  P  G  Q  S  K  K  I  E  I  P  N  G  R  V  G  V  I  I  G  K  G  G  E  T  I  K  Y  L  Q  L  Q  S  G  A  K  I  Q  V  T  R  D  M  D  A  D  P  N  S  Q  N  R  A  V  E  L  M  G  T  P  D  Q  I  A  K  A  E  Q  L  I  N  E  V  L  S  E  :  A  D  S  G  G  S  G  L  V  S  R  R  L  P  G  Q  Q  S  G  G  E  Q  F  S  L  K  V  P  N  N  K  :  V  G  L  V  I  G  K  G  G  E  T  I  K  S  M  Q  A  R  T  G  A  R  I  Q  :  V  I  P  L  H  L  P  P  G  D  T  S  Q  E  R  T  V  Q  I  D  G  S  S  E  Q  I  E  A  A  K  Q  L  V  Y  E  V  I  S  E  :  N  R  A  R  N  Q  G  M  S  G  G  Y  Q  Q  G  Y  Q  A  R  P  P  T  S  W  A  P  P  G  A  P  M  Q  Q  S  G  Y  G  Y  G  Q  P  G  A  Y  P  S  Q  P  S  Y  P  G  Y  P  P  Q  P  A  S  A  G  Y  A  S  G  W  D  Q  S  G  A  Q  N  Q  Q  S  Q  A  G  G  Y  D  Y  Y  N  Q  Q  A  P  Q  Q  Q  Q  Q  A  A  G  G  S  A  A  S  T  D  N  S  A  Y  G  Y  N  Q  Q  P  A  S  G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </first_frame>
            <second_frame>  H  S  L  Y  N  H  F  S  H  *  G  F  E  N  P  T  A  A  A  L  L  L  P  Q  I  *  A  N  R  K  Q  Q  W  Q  K  K  H  S  T  V  H  Q  M  P  V  T  T  R  G  S  T  M  I  K  R  H  R  L  L  V  L  V  D  L  L  D  F  L  L  R  S  L  P  Y  L  L  L  T  V  L  L  L  L  R  L  T  T  M  F  R  R  L  W  M  I  S  S  W  L  S  R  R  L  R  R  S  L  L  G  C  *  I  V  L  K  R  R  N  L  E  L  I  I  T  A  V  V  P  V  D  M  I  P  M  N  :  T  S  P  L  L  L  L  Q  L  Q  V  H  M  V  I  R  G  R  A  R  R  L  K  Y  Q  M  A  E  L  V  *  L  *  E  K  V  G  R  P  S  S  I  F  N  S  S  L  E  P  K  F  R  L  L  E  T  W  M  L  I  L  I  L  K  T  E  Q  L  N  S  W  V  L  Q  T  K  L  L  R  L  N  S  *  L  M  R  F  F  L  R :   P  I  L  V  V  L  V  *  F  P  E  D  Y  L  D  S  N  L  E  G  N  S  F  P  *  K  S  L  T  T  R :   L  V  L  L  L  E  K  E  V  K  L  *  K  V  C  R  Q  E  L  E  R  V  F  R :   *  S  L  C  T  C  L  L  V  T  H  R  R  K  E  Q  S  K  L  T  G  Q  V  N  R  L  R  L  L  S  S  W  C  M  K  *  L  A  R :   I  V  L  G  I  K  G  C  R  E  D  I  N  R  V  I  R  P  G  L  L  Q  A  G  P  L  L  V  H  L  C  N  N  L  V  M  A  M  V  S  L  V  H  I  L  L  N  H  L  T  L  A  T  L  L  N  L  P  L  L  D  M  P  L  A  G  I  R  V  V  L  K  I  N  N  L  R  Q  E  G  M  I  T  T  T  N  R  L  H  N  N  S  S  K  L  L  E  V  Q  L  L  Q  L  I  I  V  P  M  V  T  T  S  N  L  P  Q  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </second_frame>
            <third_frame>   I  L  F  T  T  T  S  L  T  R  V  S  K  T  L  P  P  L  L  S  F  Y  P  K  S  E  Q  I  E  S  N  N  G  R  R  S  T  V  R  C  T  R  C  R  *  Q  Q  E  E  V  R  *  S  S  G  T  V  S  W  S  S  *  T  Y  W  I  F  C  S  D  R  F  L  I  F  S  *  R  C  C  S  S  F  V  L  Q  Q  C  S  A  A  Y  G  *  F  P  V  G  *  A  E  G  S  G  D  R  C  *  V  V  E  *  C  *  S  E  E  T  *  S  *  *  *  R  R  W  C  R  W  I  *  F  L  *  T :   Q  A  H  C  Y  S  F  S  Y  K  F  I  W  L  S  G  A  E  Q  E  D  *  N  T  K  W  Q  S  W  C  D  Y  R  K  R  W  G  D  H  Q  V  S  S  T  P  V  W  S  Q  N  S  G  Y  *  R  H  G  C  *  S  *  F  S  K  Q  S  S  *  T  H  G  Y  S  R  P  N  C  *  G  *  T  V  D  *  *  G  S  F  *   : G  R  F  W  W  F  W  S  S  F  P  K  I  T  W  T  A  I  W  R  G  T  V  F  L  E  S  P  *  Q  Q   : G  W  S  C  Y  W  K  R  R  *  N  Y  K  K  Y  A  G  K  N  W  S  A  Y  S   : G  D  P  F  A  L  A  S  W  *  H  I  A  G  K  N  S  P  N  *  R  V  K  *  T  D  *  G  C  *  A  A  G  V  *  S  N  *  R   : E  S  C  *  E  S  R  D  V  G  R  I  S  T  G  L  S  G  P  A  S  Y  K  L  G  P  S  W  C  T  Y  A  T  I  W  L  W  L  W  S  A  W  C  I  S  F  S  T  I  L  P  W  L  P  S  S  T  C  L  C  W  I  C  L  W  L  G  S  E  W  C  S  K  S  T  I  S  G  R  R  V  *  L  L  Q  P  T  G  S  T  T  T  A  A  S  C  W  R  F  S  C  F  N  *  *  *  C  L  W  L  Q  P  A  T  C  L  R  L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109147" stop="109552"/>
                    <exon start="110384" stop="110652"/>
                    <exon start="110786" stop="110878"/>
                    <exon start="110966" stop="111037"/>
                    <exon start="111158" stop="111274"/>
                    <exon start="113712" stop="114812"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2055</number_coding_nucleotides>
                  <number_encoded_amino_acids>685</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLQPLLSLGFRKPYRRCSPFTPNLSKSKATMAEEAQYGAPDAGNNKRKYDDQAAPSPGPRRPTGFSAPIASLSSPDGAAPPSSYNNVPPPMDDFQLAKQKAQEIAARLLNSAEAKKPRVDNNGGGAGGYDSYEHKPIVTPSVTSSYGYPGQSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQNRAVELMGTPDQIAKAEQLINEVLSEADSGGSGLVSRRLPGQQSGGEQFSLKVPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSQERTVQIDGSSEQIEAAKQLVYEVISENRARNQGMSGGYQQGYQARPPTSWAPPGAPMQQSGYGYGQPGAYPSQPSYPGYPPQPASAGYASGWDQSGAQNQQSQAGGYDYYNQQAPQQQQQAAGGSAASTDNSAYGYNQQPASGYSQGQAYAQDGYGGYHVPAPHSGGYQGSGYEQQQGYSSTAGYGNASNPTSDGQNSSYGAQTDGSQAPPPASATAQQGYHSGQQPSPNPSYPSQGSAQAGYGVPPTSQGGYGTQPAGGYAASYGAPQAQKPPTQASYGQPQQSPSAQAGYAQPAPAQPGYPQPAAQAQSGYAQADPNAQRPPSSAYGAPPAQPGYGAQSYGAPPSYGQQPPPYNSAYGAYSQPQAYASEAAPTAQSVPPSGGVAKASPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111569" e_stop="114076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="111569" e_stop="114076" e_length="2508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111569" stop="114076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACA</gDNA_template>
            <first_frame> Y  *  F  F  Q  Q  W  *  N  L  L  T  H  *  V  T  V  Y  F  V  A  R  A  S  *  M  R  N  *  *  S  N  I  *  L  H  *  D  L  H  D  L  Y  L  Q  V  S  C  M  C  V  A  V  N  Y  L  Y  P  S  L  H  R  *  N  S  *  C  L  Q  I  I  L  P  V  L  F  L  V  D  S  V  S  *  W  E  F  *  F  M  S  V  T  P  G  *  R  R  L  A  L  A  V  L  H  F  L  E  G  S  I  L  I  N  I  G  D  M  L  S  S  C  K  V  G  L  C  E  Y  F  A  P  L  L  T  I  A  P  L  L  *  I  E  G  L  I  D  C  Y  P  H  N  I  S  V  M  *  H  D  T  Y  I  C  Q  P  F  F  P  S  V  L  F  N  *  L  D  V  A  G  A  R  D  Q  F  L  T  Q  G  I  I  R  F  K  M  T  Y  Q  N  V  *  L  P  Q  C  L  L  I  Y  I  S  L  D  F  R  C  C  D  F  C  E  A  Q  V  L  G  R  F  S  L  K  V  T  K  S  V  *  K  F  S  V  I  L  R  I  Y  Y  N  L  R  C  A  I  T  L  G  L  M  V  W  V  L  G  *  Y  Q  E  T  T  Y  N  Y  S  G  *  F  C  I  *  S  L  I  L  L  L  E  N  L  *  A  *  Y  V  L  D  N  G  D  T  N  M  E  P  *  V  L  V  F  P  Q  H  C  S  G  M  V  F  N  L  I  I  D  *  L  M  S  Y  T  G  S  K  *  G  T  D  F  A  R  I  C  N  G  G  N  *  D  L  L  R  F  I  I  V  I  F  *  V  S  I  L  R  Y  Y  M  N  V  L  H  K  C  C  N  K  E  C  L  V  *  L  S  I  V  D  V  I  T  Q  P  G  G  N  F  F  V  P  W  D  F  L  V  L  Y  L  V  S  L  K  K  N  P  L  L  S  L  L  S  H  *  Y  L  I  F  P  F  S  I  D  L  L  V  M  A  M  K  I  E  L  P  L  R  F  G  V  L  *  G  S  L  V  C  Q  F  C  V  F  T  S  *  F  L  A  V  L  L  G  S  H  F  L  L  S  K  N  G  I  I  A  L  Q  V  *  C  G  M  *  E  S  A  F  W  R  C  *  *  *  H  L  L  S  L  C  G  F  P  C  F  W  C  P  C  G  P  T  L  P  N  P  I  H  G  V  I  A  G  L  R  T  S  R  C  T  A  L  A  A  L  R  T  H  H  I  Y  S  *  Y  *  S  L  S  F  L  *  F  A  C  H  *  N  S  Y  T  T  S  L  G  I  *  I  *  I  H  H  I  I  I  I  *  N  S  L  L  M  T  Y  N  E  Q  I  T  T  S  Y  Y  Y  W  *  S  P  L  A  Y  S  G  S  L  V  I  L  *  W  Y  L  A  I  L  R  V  I  L  P  T  Y  R  M  F  L  F  F  A  F  L  L  L  Y  P  S  L  Q  I  G  *  G  *  A  S  A  R  S  F  V  P  P  N  Q  *  V  L  H  L  S  *  C  I  P  N  I  N  C  Y  M  F  V  V  *  V  T  V  S  S  A  M  I  M  L  P  G  C  G  L  V  C  P  C  N  V  S  Y  L  N  M  L  E  S  I  I  F  L  V  S  L  D  D  N  S  C  A  E  S  C  *  E  S  R  D  V  G  R  I  S  T  G  L  S  G  P  A  S  Y  K  L  G  P  S  W  C  T  Y  A  T  I  W  L  W  L  W  S  A  W  C  I  S  F  S  T  I  L  P  W  L  P  S  S  T  C  L  C  W  I  C  L  W  L  G  S  E  W  C  S  K  S  T  I  S  G  R  R  V  *  L  L  Q  P  T  G  S  T  T  T  A  A  S  C  W  R  F  S  C  F  N  *  *  *  C  L  W  L  Q  P  A  T  C  L  R  L  Q  S  R  T </first_frame>
            <second_frame>  I  N  F  F  S  S  G  E  I  C  *  H  I  K  L  Q  F  T  L  L  L  E  H  H  E  *  E  I  N  N  P  I  Y  D  F  I  R  I  F  M  I  C  I  C  K  F  H  V  C  V  L  L  S  I  T  Y  I  R  P  C  I  A  R  I  H  S  V  C  R  S  F  C  Q  S  S  S  W  S  T  A  S  V  N  G  N  S  S  S  C  Q  *  P  L  D  E  G  D  W  L  L  L  C  F  I  F  W  K  E  V  F  L  L  I  L  E  I  C  F  L  V  A  K  *  V  F  A  S  I  L  L  H  S  *  L  *  L  H  Y  F  K  *  K  D  *  *  I  V  I  H  I  I  Y  L  *  C  D  M  T  P  T  Y  V  N  L  F  S  H  Q  F  F  L  I  S  W  M  L  L  E  Q  E  I  S  F  *  P  K  A  L  S  G  L  R  *  L  I  K  M  F  S  C  L  N  V  Y  *  S  I  F  H  W  T  L  D  V  V  I  F  V  R  R  R  F  W  G  G  S  P  *  R  *  L  S  L  S  K  N  F  P  *  Y  *  G  Y  I  I  I  *  D  V  Q  *  L  L  V  *  W  F  G  Y  L  V  N  I  K  R  Q  H  I  T  I  L  V  N  F  V  S  D  H  *  Y  Y  Y  W  K  I  C  R  L  S  M  Y  W  T  M  V  T  P  T  W  N  H  K  C  W  C  S  L  S  I  V  L  V  W  S  S  T  *  L  L  I  N  *  C  H  I  L  G  V  N  E  G  L  I  L  L  G  F  A  M  E  E  T  K  I  C  *  D  L  S  L  L  S  F  R  C  Q  S  *  D  I  I  *  M  Y  Y  I  S  V  V  T  K  S  V  W  C  N  Y  L  L  L  M  S  L  L  S  Q  G  A  T  F  L  C  L  G  I  F  *  C  F  I  W  F  L  S  R  K  I  H  Y  F  H  Y  *  A  T  S  I  *  F  S  L  S  P  *  T  F  *  S  W  L  *  R  S  N  F  L  *  G  L  E  C  F  K  D  H  *  Y  V  S  S  V  C  S  R  L  D  S  *  Q  Y  C  *  V  R  I  S  Y  Y  Q  K  M  E  S  L  P  F  K  C  D  V  A  C  R  N  L  L  S  G  G  V  N  N  D  I  Y  Y  H  S  V  V  F  L  V  F  G  V  P  V  V  Q  L  F  R  T  Q  F  T  E  *  *  L  V  F  E  P  Q  G  A  L  L  L  L  L  C  E  H  I  I  F  I  L  N  I  E  V  C  R  F  S  N  S  H  V  I  E  T  V  I  Q  L  L  W  V  Y  K  F  E  Y  T  I  S  L  L  Y  K  I  L  C  L  *  H  I  M  N  R  L  L  H  H  I  I  I  G  K  V  P  W  L  I  V  V  P  W  S  S  Y  S  G  I  L  L  S  *  E  L  S  C  L  H  I  E  C  F  C  F  L  L  F  C  F  C  I  L  H  F  K  *  G  E  D  E  H  L  P  G  V  L  Y  L  P  T  S  K  S  Y  I  C  L  D  A  Y  L  I  L  I  V  I  C  L  W  Y  K  L  L  F  H  L  L  *  L  C  Y  L  G  V  A  *  S  A  L  A  M  *  V  I  *  I  C  L  N  Q  S  Y  S  W  L  V  *  T  T  I  L  V  Q  N  R  A  R  N  Q  G  M  S  G  G  Y  Q  Q  G  Y  Q  A  R  P  P  T  S  W  A  P  P  G  A  P  M  Q  Q  S  G  Y  G  Y  G  Q  P  G  A  Y  P  S  Q  P  S  Y  P  G  Y  P  P  Q  P  A  S  A  G  Y  A  S  G  W  D  Q  S  G  A  Q  N  Q  Q  S  Q  A  G  G  Y  D  Y  Y  N  Q  Q  A  P  Q  Q  Q  Q  Q  A  A  G  G  S  A  A  S  T  D  N  S  A  Y  G  Y  N  Q  Q  P  A  S  G  Y  S  Q  G   </second_frame>
            <third_frame>   L  I  F  S  A  V  V  K  F  A  D  T  L  S  Y  S  L  L  C  C  *  S  I  M  N  E  K  L  I  I  Q  Y  M  T  S  L  G  S  S  *  S  V  S  A  S  F  M  Y  V  C  C  C  Q  L  P  I  S  V  L  A  S  L  E  F  I  V  F  A  D  H  F  A  S  P  L  L  G  R  Q  R  Q  L  M  G  I  L  V  H  V  S  D  P  W  M  K  E  I  G  S  C  C  A  S  F  F  G  R  K  Y  S  Y  *  Y  W  R  Y  A  F  *  L  Q  S  R  S  L  R  V  F  C  S  T  L  N  Y  S  S  I  T  L  N  R  R  I  N  R  L  L  S  T  *  Y  I  C  N  V  T  *  H  L  H  M  S  T  F  F  P  I  S  S  F  *  L  V  G  C  C  W  S  K  R  S  V  S  N  P  R  H  Y  Q  V  *  D  D  L  S  K  C  L  V  A  S  M  S  I  D  L  Y  F  I  G  L  *  M  L  *  F  L  *  G  A  G  F  G  E  V  L  L  E  G  N  *  V  C  L  K  I  F  R  N  I  E  D  I  L  *  S  E  M  C  N  N  S  W  F  N  G  L  G  T  W  L  I  S  R  D  N  I  *  L  F  W  L  I  L  Y  L  I  T  D  I  I  I  G  K  F  V  G  L  V  C  I  G  Q  W  *  H  Q  H  G  T  I  S  V  G  V  P  S  A  L  F  W  Y  G  L  Q  P  N  Y  *  L  T  N  V  I  Y  W  E  *  M  R  D  *  F  C  *  D  L  Q  W  R  K  L  R  F  V  E  I  Y  H  C  Y  L  L  G  V  N  L  E  I  L  Y  E  C  T  T  *  V  L  *  Q  R  V  F  G  V  I  I  Y  C  *  C  H  Y  S  A  R  G  Q  L  F  C  A  L  G  F  S  S  A  L  F  G  F  S  Q  E  K  S  I  T  F  I  T  K  P  L  V  S  D  F  P  F  L  H  R  P  F  S  H  G  Y  E  D  R  T  S  F  E  V  W  S  A  L  R  I  I  S  M  S  V  L  C  V  H  V  L  I  L  S  S  T  V  R  F  A  F  L  I  I  K  K  W  N  H  C  P  S  S  V  M  W  H  V  G  I  C  F  L  A  V  L  I  M  T  S  I  I  T  L  W  F  S  L  F  L  V  S  L  W  S  N  S  S  E  P  N  S  R  S  D  S  W  S  S  N  L  K  V  H  C  S  C  C  F  A  N  T  S  Y  L  F  L  I  L  K  F  V  V  S  L  I  R  M  S  L  K  Q  L  Y  N  F  S  G  Y  I  N  L  N  T  P  Y  H  Y  Y  I  K  F  S  A  Y  D  I  *  *  T  D  Y  Y  I  I  L  L  L  V  K  S  L  G  L  *  W  F  L  G  H  L  I  V  V  S  C  Y  L  K  S  Y  L  A  Y  I  *  N  V  F  V  F  C  F  F  A  F  V  S  F  T  S  N  R  V  R  M  S  I  C  Q  E  F  C  T  S  Q  P  V  S  L  T  S  V  L  M  H  T  *  Y  *  L  L  Y  V  C  G  I  S  Y  C  F  I  C  Y  D  Y  A  T  W  V  W  L  S  L  P  L  Q  C  E  L  F  K  Y  A  *  I  N  H  I  L  G  *  F  R  R  Q  F  L  C  R  I  V  L  G  I  K  G  C  R  E  D  I  N  R  V  I  R  P  G  L  L  Q  A  G  P  L  L  V  H  L  C  N  N  L  V  M  A  M  V  S  L  V  H  I  L  L  N  H  L  T  L  A  T  L  L  N  L  P  L  L  D  M  P  L  A  G  I  R  V  V  L  K  I  N  N  L  R  Q  E  G  M  I  T  T  T  N  R  L  H  N  N  S  S  K  L  L  E  V  Q  L  L  Q  L  I  I  V  P  M  V  T  T  S  N  L  P  Q  V  T  V  K  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112711" stop="113316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHYSARGQLFCALGFSSALFGFSQEKSITFITKPLVSDFPFLHRPFSHGYEDRTSFEVWSALRIISMSVLCVHVLILSSTVRFAFLIIKKWNHCPSSVMWHVGICFLAVLIMTSIITLWFSLFLVSLWSNSSEPNSRSDSWSSNLKVHCSCCFANTSYLFLILKFVVSLIRMSLKQLYNFSGYINLNTPYHYYIKFSAYDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113689" stop="114075"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRQFLCRIVLGIKGCREDINRVIRPGLLQAGPLLVHLCNNLVMAMVSLVHILLNHLTLATLLNLPLLDMPLAGIRVVLKINNLRQEGMITTTNRLHNNSSKLLEVQLLQLIIVPMVTTSNLPQVTVKD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111691" stop="111906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSASFMYVCCCQLPISVLASLEFIVFADHFASPLLGRQRQLMGILVHVSDPWMKEIGSCCASFFGRKYSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110436" e_stop="110640"/>
            <exon e_start="114061" e_stop="114431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.235" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="110436" e_stop="110640" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.235" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110641" i_stop="114060" i_length="3420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114061" e_stop="114431" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110436" stop="110640"/>
              <exon start="114061" stop="114431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAG : GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGG</gDNA_template>
            <first_frame> E  Q  E  D  *  N  T  K  W  Q  S  W  C  D  Y  R  K  R  W  G  D  H  Q  V  S  S  T  P  V  W  S  Q  N  S  G  Y  *  R  H  G  C  *  S  *  F  S  K  Q  S  S  *  T  H  G  Y  S  R  P  N  C  *  G  *  T  V  D  *  *   : G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G </first_frame>
            <second_frame>  S  K  K  I  E  I  P  N  G  R  V  G  V  I  I  G  K  G  G  E  T  I  K  Y  L  Q  L  Q  S  G  A  K  I  Q  V  T  R  D  M  D  A  D  P  N  S  Q  N  R  A  V  E  L  M  G  T  P  D  Q  I  A  K  A  E  Q  L  I  N  E  :  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M   </second_frame>
            <third_frame>   A  R  R  L  K  Y  Q  M  A  E  L  V  *  L  *  E  K  V  G  R  P  S  S  I  F  N  S  S  L  E  P  K  F  R  L  L  E  T  W  M  L  I  L  I  L  K  T  E  Q  L  N  S  W  V  L  Q  T  K  L  L  R  L  N  S  *  L  M  R :   L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110437" stop="110640"/>
                    <exon start="114061" stop="114429"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQNRAVELMGTPDQIAKAEQLINEVTVKDKLMPRMAMVDIMYLPLILVGIRVLVMSSNKAIALLLAMGMPQTQHQTARTRRMVPKLMAVKHLHQHQPQLNKDIILASSPALILATHLKALLRLDMGCPQLLKVGMVHSQLEAMLLVM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 54440 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 2177 bytes was the average size of a spliced alignment
$ 28968 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1524 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:27:20
-->
