<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:48:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7742" ref_strand="+" ref_description="SGN-M7742 C2_At3g15090 [cosii_markers]">
      <seq>acactctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggcattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaatttggttgcaattttcaaatttacttactggtgaattaagggtgattgctaaatatccaagtatgtgtataatttgtctatttctaaaattgattagatctaaatttaacaaaagtaaattatatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47451" stop="39919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47151" g_stop="46838" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44792" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43276" g_stop="43117" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="776" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42969" g_stop="42850" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="896" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42739" g_stop="42631" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="1005" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40912" g_stop="40222" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1696" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1697" polyA_stop="1712"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-M7742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1696</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47151" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44792"/>
          <exon e_start="43276" e_stop="43117"/>
          <exon e_start="42969" e_stop="42850"/>
          <exon e_start="42739" e_stop="42631"/>
          <exon e_start="40912" e_stop="40222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</genome_strand>
        <mrna_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7742-2" ref_strand="+" ref_description="SGN-M7742-2 C2_At3g15090-2 [cosii_markers]">
      <seq>cagacacgttcgcttcactctccccttttttgcatgtacactcttttactgaacattgaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgatatctcggaggattgagattggtactggcgatggaggcatttcgaatttaggttttgacaaaagaggtattgttacgagctgtagagctgtgttgttgccgcgatttggtggaccggaggtgcttgagtttcgtgacaatgtagctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccacttgataccagaatgcgatcaggatatggacgttcaattttcgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggaggtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaggatgaacttgctccaaagccgggatcactttcacatgcggaagccagtgctatcccttttgctgcgctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgcagtggctgcaggctgccatgtttctactacatgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccgttgactataccattgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggtattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcacggactagctattggtcttcctatggcagcagccatcttgctgaagaaacaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaagtcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtacgtggattcagtgcacaaggctataatgtcccatgcaatctggtattgcactgaatacttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaatttacactctgttggaatatataggattcagaagaaaactgtgcaacctgtaaattctcgggacattctcattttttttcttttctatatctatccgtgattgtttctatgtctcgtctcgtctttaaccggtagggaagttgaactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47488" stop="40208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47188" g_stop="46838" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="578" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44792" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="652" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43276" g_stop="43117" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="812" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42969" g_stop="42850" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="932" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42739" g_stop="42631" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1041" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40912" g_stop="40483" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1475" r_length="434" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-M7742-2" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>1472</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7742-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47188" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44792"/>
          <exon e_start="43276" e_stop="43117"/>
          <exon e_start="42969" e_stop="42850"/>
          <exon e_start="42739" e_stop="42631"/>
          <exon e_start="40912" e_stop="40483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACACGTCCTCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATA-G-----GAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTAT</genome_strand>
        <mrna_strand>CAGACACGTTCGCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTTACTGAA-CATTGAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGATATCTCGGAGGATTGAGATTGGTACTGGCGATGGAGGCATTTCGAATTTAGGTTTTGACAAAAGAGGTATTGTTACGAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGGTGCTTGAGTTTCGTGACAATGTAGCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCACTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGATATGGACGTTCAATTTTCGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGAGGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAGGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGCG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCGCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCAGTGGCTGCAGGCTGCCATGTTTCTACTACATGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCGTTGACTATACCATTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGTATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCACGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAACAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAAGTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTACGTGGATTCAGTGCACAAGGCTATAATGTCCCATGCAATCTGGTATTGCACTGAATACTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAATTTACACTCTGTTGGAATATATAGGATTCAGAAGAAAACTGTGCAACCTGTAAATTCTCGGGACATTCTC-ATTTTTTTTCTTTTC-TATATCTATCCGTGATTGTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="47188" PGL_stop="40222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47188" e_stop="46838"/>
            <exon e_start="45409" e_stop="45182"/>
            <exon e_start="44865" e_stop="44792"/>
            <exon e_start="43276" e_stop="43117"/>
            <exon e_start="42969" e_stop="42850"/>
            <exon e_start="42739" e_stop="42631"/>
            <exon e_start="40912" e_stop="40222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="0.960"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="47188" e_stop="46838" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45409" e_stop="45182" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44865" e_stop="44792" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43276" e_stop="43117" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42969" e_stop="42850" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.952">
            <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42739" e_stop="42631" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40912" e_stop="40222" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47188" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44792"/>
              <exon start="43276" stop="43117"/>
              <exon start="42969" stop="42850"/>
              <exon start="42739" stop="42631"/>
              <exon start="40912" stop="40483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7742-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47151" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44792"/>
              <exon start="43276" stop="43117"/>
              <exon start="42969" stop="42850"/>
              <exon start="42739" stop="42631"/>
              <exon start="40912" stop="40222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACACGTCCTCTTCACTCTCCCCTTTTTTGCATGTACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA : ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG : GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG : GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG : GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG : GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> Q  T  R  P  L  H  S  P  L  F  C  M  Y  T  L  S  L  N  H  S  T  I  C  I  H  F  P  Q  I  T  E  F  A  A  Q  F  L  C  K  T  M  I  R  L  R  Y  R  R  I  E  I  G  T  G  D  G  G  I  S  N  L  G  F  G  K  R  G  I  V  T  S  C  R  A  V  L  L  P  R  F  G  G  P  E  M  L  E  F  R  D  N  V  S  V  P  D  L  K  P  N  Q  V  L  V  R  A  R  A  V  S  I  N  P  L  D  T  R  :  M  R  S  G  Y  G  R  S  I  F  E  P  L  L  P  L  I  L  G  R  D  I  S  G  E  V  A  A  V  G  N  S  V  K  S  L  T  V  G  Q  D  V  F  G  A  L  H  P  T  A  V  R  G  T  Y  T  D  Y  A  I  L  A  E  D  E  L  A  P  K  P  G  S  L  S  H  V  :  E  A  S  A  I  P  F  A  A  L  T  A  W  R  A  L  K  S  T  A  R  I  R  E  G :   H  R  V  L  V  I  G  G  G  G  A  V  G  F  S  A  I  Q  L  A  V  A  A  G  C  H  V  S  T  T  C  G  G  E  S  I  S  R  I  L  A  A  G  A  E  Q  A  I  D  Y  T  S  E  :  D  A  E  V  A  L  K  G  H  F  D  A  V  L  D  T  I  G  V  P  D  T  E  R  M  G  I  S  L  L  K  K  G  G  H  Y  M  T  L  Q  :  G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </first_frame>
            <second_frame>  R  H  V  L  F  T  L  P  F  F  A  C  T  L  F  H  *  T  I  Q  Q  Y  A  S  I  F  P  K  S  L  N  L  L  L  N  F  F  A  K  Q  *  S  D  *  D  I  G  G  L  R  L  V  L  V  M  E  E  F  R  I  *  V  L  A  K  E  V  L  L  Q  A  V  E  L  C  C  C  R  D  L  V  D  R  R  C  L  S  F  V  T  M  Y  L  F  L  I  *  N  L  I  K  C  L  F  V  L  V  L  F  Q  S  I  R  L  I  P  E :   C  D  Q  A  M  D  V  Q  F  L  N  H  F  Y  H  *  F  W  A  E  I  *  V  V  K  L  Q  L  L  E  I  L  S  S  H  L  Q  L  G  R  M  Y  L  V  L  C  I  Q  P  L  *  G  V  L  I  L  T  M  L  F  L  R  K  M  N  L  L  Q  S  R  D  H  F  H  M  W :   K  P  V  L  S  L  L  L  L  *  L  L  G  V  R  *  K  V  L  P  E  *  E  R   : G  I  G  Y  W  S  *  V  E  E  E  Q  *  V  S  L  Q  F  S  L  L  W  L  Q  A  A  M  F  L  L  R  V  E  E  R  V  *  V  A  F  *  Q  P  V  L  S  R  P  L  T  I  P  V  R :   M  L  K  *  H  L  R  G  I  L  M  L  S  W  I  Q  L  V  C  Q  I  Q  R  E  W  A  L  A  F  *  R  K  V  D  T  T  *  R  Y  R :   G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </second_frame>
            <third_frame>   D  T  S  S  S  L  S  P  F  L  H  V  H  S  F  T  E  P  F  N  N  M  H  P  F  S  P  N  H  *  I  C  C  S  I  S  L  Q  N  N  D  P  I  E  I  S  E  D  *  D  W  Y  W  *  W  R  N  F  E  F  R  F  W  Q  K  R  Y  C  Y  K  L  *  S  C  V  V  A  A  I  W  W  T  G  D  A  *  V  S  *  Q  C  I  C  S  *  S  K  T  *  S  S  A  C  S  C  S  C  C  F  N  Q  S  A  *  Y  Q   : N  A  I  R  L  W  T  F  N  F  *  T  T  S  T  I  D  F  G  P  R  Y  K  W  *  S  C  S  C  W  K  F  C  Q  V  T  Y  S  W  A  G  C  I  W  C  S  A  S  N  R  C  E  G  Y  L  Y  *  L  C  Y  S  C  G  R  *  T  C  S  K  A  G  I  T  F  T  C   : G  S  Q  C  Y  P  F  C  C  S  N  C  L  A  C  A  K  K  Y  C  Q  N  K  R  G  :  A  *  G  I  G  H  R  W  R  R  S  S  R  F  L  C  N  S  A  C  C  G  C  R  L  P  C  F  Y  Y  V  W  R  R  E  Y  K  S  H  F  S  S  R  C  *  A  G  H  *  L  Y  Q  *   : G  C  *  S  S  T  *  G  A  F  *  C  C  L  G  Y  N  W  C  A  R  Y  R  E  N  G  H  *  P  F  K  E  R  W  T  L  H  D  V  T   : G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47188" stop="46838"/>
                    <exon start="45409" stop="45182"/>
                    <exon start="44865" stop="44792"/>
                    <exon start="43276" stop="43117"/>
                    <exon start="42969" stop="42850"/>
                    <exon start="42739" stop="42631"/>
                    <exon start="40912" stop="40731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1221</number_coding_nucleotides>
                  <number_encoded_amino_acids>407</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTRPLHSPLFCMYTLSLNHSTICIHFPQITEFAAQFLCKTMIRLRYRRIEIGTGDGGISNLGFGKRGIVTSCRAVLLPRFGGPEMLEFRDNVSVPDLKPNQVLVRARAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGNSVKSLTVGQDVFGALHPTAVRGTYTDYAILAEDELAPKPGSLSHVEASAIPFAALTAWRALKSTARIREGHRVLVIGGGGAVGFSAIQLAVAAGCHVSTTCGGESISRILAAGAEQAIDYTSEDAEVALKGHFDAVLDTIGVPDTERMGISLLKKGGHYMTLQGEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40725" stop="40465"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 3792 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1896 bytes was the average size of a spliced alignment
$ 5720 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5720 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:48:05
-->
