<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 11:27:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7499" ref_strand="+" ref_description="SGN-M7499 C2_At2g42700 [cosii_markers]">
      <seq>caaagatggacctgaaatttgagatattttccctgggtgatgtttcaaaaactgttggaaagcttctaacagacatgtcaagtctttatgatgtcggtcgacgtaagagatctgcagggctattactcattgaccgcactcttgaccttcttactccatgctatcatggggattcacttgtggatcaaatgttttcatcattgcctcacagagaacggatggcatccttgagtcaatctaaaagctcccaaagccaagttaaacttggccctgcttacttgcaacgttctcccctcaccgttcagataccacttaataatttcctaagagaggatacttcaagttcttacaactttcagctggtggaaagcgttgaagcatttctccgtggttggaattcaggagactcaacttctcagatggttgagttggtgaattttagcactaaacttagtggtgaaatgtcctcacaagattttcagagtgacctttgtggttctttcgtctctacggaaaattttcatggaacaccgtacctagaagccatactagagcgaagaacaaaagatggggctgtgctgatcaagaaatggctgcaagaaagcttacgtcgagaaaatatatcattgaatgcaaaaatccgtcctggttatgcttcaaaatcagatctgcagactatggttaaggcattagctaaaagccagtcattgctggcgaaaaacaaaggaattatccagctagcagcagcagcactatctgcattagatgaatcacatagtgctaaatgggatgcatttagcagtgctgagaagatactgaacgtaaatgctggggacacaagccaaagtcttgctgctcaaattagtgatctcataaataaaagtgcgttagttagttcacagggtaataataagatggatgctcaacgggggcttcttactctacaagatgctctgctactcacagtagttggatatatattggcaggtgagaatttcccatcttctgggactgttggtcctttctcttggcaagaggaacattttatgaaagaagcaattgttgatgcgattgttgagaacccaacagttgcgaaattaaagtttctgaaaggtttaactcaggatctagaagccaactttaacagaaaatcagaagagaagaaggaagatctttctaataccgaaagcattgattttgatgatgacgattggggtagttggggtgatgaagattctggaaaagataaaagaaaagagcaagtgtatgatgacatgcaattaaagttagaattacgtgatagggtggataatctattcaaattctttcacaaattgtccagcttaaaaaagaatgtttcattcagagagtggtcacaggctctgagtaagttcaatgatgatccttactcaaacaaaggactgctttataaagtgctatcaagggtgttagataagcatgaagtacctggcttagagtatcattcatctactgttggccgcctattcaaaagcgggtttgggagattcggccttgggcaggctaaaccaagtctggcagatcacgatgttattctcgtgtttgttgtgggaggcataaatggtgtagaggttcgagaagcccaggaggcattatccgagagcaacaggcctgaagtcgaattaattttaggtggaacaacttttcttacacctaaagatatgtttgaactactgctgggcgattattgttgtgtttaaggctgtgtagctttctttgttttgttatgtaaaatttaagatgaaaagttctgtctaatgtctgatatttagagaatacaaaacatattttttccttaatgtaaacagnattgcaatttatatgattttncatatattttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64887" stop="68105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65189" g_stop="66727" g_length="1539"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="1541" r_length="1536" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66728" i_stop="66801" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66802" g_stop="66870" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1542" r_stop="1610" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66871" i_stop="67535" i_length="665">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67536" g_stop="67800" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1611" r_stop="1881" r_length="271" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1885" polyA_stop="1895"/>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-M7499" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>1873</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65189" e_stop="66727"/>
          <exon e_start="66802" e_stop="66870"/>
          <exon e_start="67536" e_stop="67800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACCTGAAACTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGATGGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGATTAAGGCATTAGCTAAAAGCCAGTCACTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCTGCAGCAGCACTATCTGCACTAGATGAGTCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAATGTAAATGCTGGGGACACGAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAACAAAATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTTGTTGGATATATATTGGCAGGTGAGAATTTCCCATCTTCTGGGACTGTTGGTCCTTTCTCTTGGCAAGAGGAACATTTTATGAAAGAAGCAATTGTTGATGCGATTATTGAGAACCCAACAGTTGCGAAATTAAAGTTTCTGAAAGGTTTAACTCAGGATCTAGAAGCCAACTTTAACAGAAAATCAGAAGAGAAGAAGGAAGATCTTTCTAATACTGAAAGCATTGATTTTGATGATGACGATTGGGGTAGTTGGGGTGATGAAGATTCTGGAAAAGATAAAAGAAAAGAGCAAGTGTATGATGACATGCAATTGAAGTTAGAACTACGTGATAGGGTGGATAATCTATTCAAATTTTTTCACAAATTGTCCAGCTTTAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTTAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGTGCTATCAAGGGTGTTAGATAAGCATGAAGTACCTGGCTTAGAGTATCATTCATCTACTGTTGGCCGCCTATTCAAAAGCGGGTTTGGGAGATTTGGTCTTGGGCAGGTATGATTCAATTAGATATCAATATTTTCATTGCTAGCCTAAGTTGCTGATTTGATTCTGGAATTTTTGCACAGGCAAAACCAAGTCTGGCAGATCACGATGTTATTCTCGTGTTTGTTGTGGGAGGCATAAATGGTGTAGAGGTTTGTTTTCCTTGAACTCTTAGTGAATTTTCATGTTTCTGCTTTCATATTGTTTTAACGAATTTGCAACACATGCAACAACGGTGAAGATATTAGTTTTTTTTTGAATGACAAGGGAAACTGGCAGCCGCTACCCTTTGGGTGCGCACGGGGCAAAACCCTCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGTGGTAACCCGCACTAGGCAAGCCTGATGCGACGAGCTCGACCTAGAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAGATCCCAAGCCTAAACCATGGGCCACCCCGAAGGGTTAAGATATTAGTTAATAAAGCAAAAAGACTATAAAACACTGCTAGTAAGCTCGTTGATGGGAAACCAAGAGTGTGACCTAGTTGTCAATGAAGTGGTTTTAGAACCCTGAGGTCTTAGGTTCTAAACTCATCGGAGGCAAAAAAAACACTTAGGCGATCTTCCCATCTGTCCAAGCATTGGTGGACAGAGTTACCTGACATCGATGCTATTTGAAATAACAGTCCCTCCCTGTTCCATCACTATAAAACACTGTAATCCTTTCTCTTTCAATTGAAGTATGCTCGTTGGTGCTACGTGAAATAACAGTCCGTGCTTGTTCTATCAATAGGTTCGAGAAGCTCAGGAGGCATTATCTGAGAGCAGCAGGCCTGAAGTCGAATTAATTTTAGGTGGAACAACTTTTCTTACACCTAAAGATATGTTTGAACTACTGCTGGGCGATTATTGTTGTGTGTAAGGCTGTGTAGCTTTC-TAGTTTTGTTATGTAAAGTTTAAGATGACAAGTTCTGTCTAATGTCTGATATTTAGAGAATACAAAAC-----TTTTCCTTAATGTAAACAGCATTGGAACTTATATGATTTTCAATATATTTTTC</genome_strand>
        <mrna_strand>ATGGACCTGAAATTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTCGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTATCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTGAGTCAATCTAAAAGCTCCCAAAGCCAAGTTAAACTTGGCCCTGCTTACTTGCAACGTTCTCCCCTCACCGTTCAGATACCACTTAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAGGAGACTCAACTTCTCAGATGGTTGAGTTGGTGAATTTTAGCACTAAACTTAGTGGTGAAATGTCCTCACAAGATTTTCAGAGTGA-C--CTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGAACAAAAGATGGGGCTGTGCTGATCAAGAAATGGCTGCAAGAAAGCTTACGTCGAGAAAATATATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGGTTAAGGCATTAGCTAAAAGCCAGTCATTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCAGCAGCAGCACTATCTGCATTAGATGAATCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAACGTAAATGCTGGGGACACAAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAATAAGATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTAGTTGGATATATATTGGCAGGTGAGAATTTCCCATCTTCTGGGACTGTTGGTCCTTTCTCTTGGCAAGAGGAACATTTTATGAAAGAAGCAATTGTTGATGCGATTGTTGAGAACCCAACAGTTGCGAAATTAAAGTTTCTGAAAGGTTTAACTCAGGATCTAGAAGCCAACTTTAACAGAAAATCAGAAGAGAAGAAGGAAGATCTTTCTAATACCGAAAGCATTGATTTTGATGATGACGATTGGGGTAGTTGGGGTGATGAAGATTCTGGAAAAGATAAAAGAAAAGAGCAAGTGTATGATGACATGCAATTAAAGTTAGAATTACGTGATAGGGTGGATAATCTATTCAAATTCTTTCACAAATTGTCCAGCTTAAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTGAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGTGCTATCAAGGGTGTTAGATAAGCATGAAGTACCTGGCTTAGAGTATCATTCATCTACTGTTGGCCGCCTATTCAAAAGCGGGTTTGGGAGATTCGGCCTTGGGCAG..........................................................................GCTAAACCAAGTCTGGCAGATCACGATGTTATTCTCGTGTTTGTTGTGGGAGGCATAAATGGTGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGAAGCCCAGGAGGCATTATCCGAGAGCAACAGGCCTGAAGTCGAATTAATTTTAGGTGGAACAACTTTTCTTACACCTAAAGATATGTTTGAACTACTGCTGGGCGATTATTGTTGTGTTTAAGGCTGTGTAGCTTTCTTTGTTTTGTTATGTAAAATTTAAGATGAAAAGTTCTGTCTAATGTCTGATATTTAGAGAATACAAAACATATTTTTTCCTTAATGTAAACAGNATTGCAATTTATATGATTTTNCATATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8378" ref_strand="+" ref_description="SGN-M8378 C2_At4g27540 [cosii_markers]">
      <seq>aaaaatggcgttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatcgctggggattagagcaccgcccagttatcaacaaagcttgattcgcattgctcagtgtgctactgcagttattctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92091" stop="97026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92391" g_stop="92852" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93644" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="605" r_length="143" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93645" i_stop="93739" i_length="95">
            <donor d_prob="0.900" d_score="0.88"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93740" g_stop="93751" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="617" r_length="12" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-M8378" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92391" e_stop="92852"/>
          <exon e_start="93500" e_stop="93644"/>
          <exon e_start="93740" e_stop="93751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGT</genome_strand>
        <mrna_strand>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATC-AACAAAGCTTGATTCGCATTGCTCAGTGTGCT-ACTGC...............................................................................................AGTTATTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2233" ref_strand="+" ref_description="SGN-M2233 T1736 [cos_markers]">
      <seq>ttctcagctaacccgttatctctgagtgtacccgaacccgtattcgaatcctggctccgagatactggctacctcgaaattctcgatcaacggaccaccgatctccaccgccactcctccaccaccaccgtggcggcgacgactgcttcctccgacgctgctgttactaattctgctgcagccgcggtgtcaatttcaaatggagtcttcgttctaatattttcacgtattggaaccttattatcgcttttaacgcttaatccgtttgcaaaactcacatctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctccctctttgtcctcttctttgcttgctctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttggcactttgggatgtattaaagttatgtggagatcgctggggattagagcaccggccagttatcaaacaaagcttgattcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92101" stop="93924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92401" g_stop="92852" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93624" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="577" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-M2233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92401" e_stop="92852"/>
          <exon e_start="93500" e_stop="93624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCA</genome_strand>
        <mrna_strand>TTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGGCCAGTTATCAAACAAAGCTTGATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8378-2" ref_strand="+" ref_description="SGN-M8378-2 C2_At4g27540-2 [cosii_markers]">
      <seq>ctcagctaacccgttatctctgagtgtacccgaacccgtattcgaaacctggctccgagataccggttacctcgaaattctcgatcaacggactaccgatctccaccgccactcctccaccaccgcggcggcggcgacgaccgcttcctccgacactgctgttactaattctgccgcagccgcggtttcaatctcaaatggagtcttcgttctcatattttcacgtattggaaccttactgtcgcttttaacgcttaatccgtttgcaaaactcacctctgatgacttttccggtgataccccgtcgtggaccctccaattcgtcgggtcattcgattcctactcatttccttcgtcgccgtctcaggctcggcttagagtacacgagaatgtgaaacgctatgctcggaattatgcctctctcttcgtcctcttctttgcttgttctctgtaccaaaagctgtttgcccttgttgggttgatatcatgtttagcactttgggatgtattaaagttatgtggagatcgctggggattagagcagcgcccagttatcaaacaaagcttgattcgcattgctcagtgtgctactgcagttattctattctgtaccaatgttcaaatggctctcttctcagctcttgcggtcagttatgtagtgatgattctgcatgcctcatttaggaagctgaccccctcgaaacaatcaacttcaaaagatggaaacaggagggtcctgagaagttgatgagtggttattattgtcaagtcatacaaccacatagtcgtcgcctggagagagggtaaaccgtgtttacaaactatagcatacgagtcttggttcatgagtacatctctcggtttgaactcagaaaattcttcgagttacaatgtaagaaaagctttcttcttcttcttattttaagtttaggttgtatgtataagtctatacaatggagaaaaaaagactagataagattgtagatgggtgtagaaccctaaagagaattggcactgctaaggctttgttattttgctatatgaattagtattggtccaaacccaaaaaaaagtaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92103" stop="97569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92403" g_stop="92852" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93500" g_stop="93636" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="587" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96708" g_stop="96779" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="659" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96875" g_stop="97267" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="1054" r_length="395" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-M8378-2" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>1052</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8378-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92403" e_stop="92852"/>
          <exon e_start="93500" e_stop="93636"/>
          <exon e_start="96708" e_stop="96779"/>
          <exon e_start="96875" e_stop="97267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCTGTATGTTTTCTCTCTCTATCATCTATACACAATGCACATTCTATATGTATGTATGTGTAAGTATGTCCGCAAATATGTATATGAACATTGACATGTATCTGTTTATGCGATTACAATTATTAATAATTAACATTTGAACTTGTGCAATAACTTGAATGGTTGGCTTTGTTTTGAACACTATCTGCTAAGGCTTAGTATGAAATGGAGTGGAATAAATATAGAGAATTCATATAACTTACTACAACTAATTTAGGATTGAGGTGTTAGGCGGTTGATTGATTGATCAAATTTTGTGTGAGAAACTTGACGTTTTTAGGCTTTTGAGAGTTAAGTGAAGCTTACGGGAGGACAGTGGATTTGGATACCGACATAAACAACATGTATACAGACATTGATATGTAGTATGTGGCAAATGCACTTTAGAAGCTTGGTCTCTGATTGGACAATGTTTAGTTATCGAGTAATATGCTGAAGTTCTTTAGAACTTGTACTTGTTAAATATAAAGATATTAAGGGCTTGGAGATTTGAAGACGGTACTTGGTTTGGATTTAGCAATATTATATAGCTGAAGGATTGTCAGTTGCTTGATTTTTGTGCTATTTGATTGCTTTGGCATTGATTGCATTTTGATAAATTTGGGTAACAGGTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCGATATTCTTGAGTAATTCCACCCCCCCCCCCTTCCCCCCCACAAAAGTATAAAGACGCCGCCTAGGGTGTTGCTCTCTTAAATGATTCCGCTCCAGCATTCTACCAGTGTATATGGTGATGGATGATATGATCATAGCTTTGATTGTTTTATCATTTGCCATATATATATTTATCCTGTGTATATTGTAAAAGTGAACACCAGGAAACAACAGTTGGCTCATCCCTGATCTTTTAGCTTCTAGTCAACCTTTTGAATATTGTCTATACTAGTGTTCCTTCTCATAAATAGCACTCTGCACTCCTCTAGATTGGAGGCTCTTACGCCAACTTTTGGTCGAGGCACAGAGTTTATGTTCATACCAAATGGAGACACTTAATAGCAGAACATGTGTAACTTAAAAAGTATTCATATCTATAATAACACTAGATTAGACCTATATGGTATAAAATCAAAGAATTATATGGAACATTTTGGCTGGCAGATTCTACATCTAACTTTACCCACGTCATCATTTGTTCTAATTGTTGTTTTCCTCATGTTGGGAGACGCTCATTACATCCTAAAAATCCTGCTCCTCTTTTGCTTTCTTGATAATCTGATCTATAAGGTCGCTACCATCCATCCAATTTGAGACCAAATGTATTTTCTTTCTTCTATTGCAAATTAGATGTTACAACATCAGTAAAAGAGTTTTGGACAGCATATCAGCGGCAATGGATGTAGAATCATGTAATGGTCTAAAGAAAAACATTGTCAATTAATTGCTTATAGAACGACATACTTAGGAGTCAGTCAGGACTCAGGACTATTCAAAATCATCACATGCCAATCTGTTGAGGTGTTGGATGACCACATATTTCTAGGTTACTGATATTCAGAAACATTGGATTTGCAATGGATACTCTTAAAACGTTTCACCAAAATTACTGGAAATCAGGATGAAGGACAAATGATCCAACCACTAAGCTAAAGTATGTAATGAGTTGGTACTACAAAATAGATGCAGATGTGAGGAATTGCATACAAATTGATCATGGAGCAGGGATATATGGTTTGGATATTTTGTTACCTAAACAACTGTGTATTCGTATAAAAATGCTGTAAAAAGTTCATATATTAGCTGCTTGTTAGGCAGTGAATGCATATTTTGAAAAATCTGTTTCTTCATCATTAGAGAAGAATGTCATGTCACTTTCTCAAATCAATTTTTGTGTTCAAAGTTTCACAAGTTCTCACAATGATAGAACCCCCAACCCAATTTGGAGAAAAACTGAGGCGTGGATGGTGTGGGGATGATGAGGAAGGTACTGTATCTTTACTCAAAATTATTATAAATAAGAAAAATATGGTAGAAACAGCTTAAATGCTTTAGTCCACGGATTTTCTAGTGTCGATGGGCCTGAAGGAATAGAAAGAGGTGGGGAATATTTGAGTATATTCATTTCCAAAAGAAAACAAGAAAAGGGGAAGTAGAAAAGGCTTATTATCTCTCCATTTCATCCTGTGTAGTACCTGCACCTTGTCTTTTATTCAAAATATTGTGAAGAAGCAAAATATGGTGGAAATAGCTTTAAATGGTTTAGCCTCAGCCAGATTAGTGTCGAAGAGCGTAAAAGTAAAAAAAGTGGGAAAGGATTTCTAGGAAGCTTTTTGGCGAGAAATTAAAAGAAGAGGGGAAAGTAAAAATGGAAGGTTTATAAGCCTCTTCATATCATCTGTTGTAGGAAACCAGTACCAGCAAAGTTAACGAGATATTGGTATCTCTTCTCCATATCATCTTTTTGCAGTACCTGCGAAGTTAACTCTACATTGATATCTCTTACAAAAACGTAAAAGATGCTTTTGCGATAGAAAAAGTTAATGAGCTGAAGTTTCCTGTCCCTTTGCACAATCTTTTTTACCAAACATAATTTATTAGATGGGGTGAGTTCTACATCTCTTCCTTCTTGTTCTCAGTATTTCTAGAGGTTACTGTTTCTTCACAAGTGATGTGAAGGTACGGATTATGACTTCATAGTTGAAGTGATGCTCTTCTGAGAGACGTGTTCTTCAAAAAGTGAAATGCAAAGTAGCTATACCTGGTATTCAGGTATTTATTCAAAAGAAACTTGTGGGGAACTACCTAGTTATAATCCAATTTCGGCAGAATATTGTTGATTGAAGAATCTAACTAGAAAGGACGAGAAAAAGAGAAAAAAAGGAAATAAGGAGGGGATGATAGGTTTCTTTTGGGTACTGGGATACTAGGACTACTCTTACATGCATATTTCAGCATTCTTTCTGTAGTCAATGTCTTCTTCCACTTCTTGAGTTCATAATACTTCTTGAGTTCTCTTCTACTCTCTTAATTGAGTTCTTCATAAAAAAGGTTAAAGGGGAAACTTTTTATGGTAAAAAATACTGCCGTTTCAGTTATTTCTCAAGAAGAAAAGAGGGGATCTGTTGAACTTTATGTATTCAATTCACCAATAAGACACGAAGGCTTACTTCACATTTTGAATTTGCACAAAAAAGACTATTTTCTACCTATCATATATGAAGCTAAATGCAGACTATTTTGTACTAACTATATATAAAAGCTAAATGCTGTGGATTGATAATGTTTTATGGTTGATTATGTGAAACTGTATAATCATTTTGTGATTGTATGTTATGTTTTCAGTGTTTGTGGATGTTACATTTCAAGATGTTTATTGTTAGATTAATATTGTCTGTGATTAGATGTTGAAATTAGAATTTTCATTGCAGGAAGTACCAATTCAAAATTAGTAGTAGTAATTTTCATTGCAAGCTTTTTATAAGTCCATGTATGTTATACACTTTGTTTCCATCTTCCTGTAAGCATGTATGTTAAATCTTGATTCACAGTTTCTGTTTAAAGCCAAAATGATGTTGTTGCTGTTTTTGCGTTTCTAGTTCTTAGATACGCTTTTCAGTCTTTTCAGATGTATATTGGACGGTTTTTGTTTCCCTAGATAATTTCAAGCACTTGTTTATTTTTGCAAGCAGAAATTTTTCTGAAACTGAATAAATTTGAGAACTGAGTCAGCCTTCTTGTACAGCTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAGGTAGGTTATCTTTCGTGTCTAATCTGTTATCTTACTCTTTATCTTCTGTTTTATTCCTAATTTCTAGAGCTTATGGCTAATCGATGCATTTGCAGTGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTC-TGGCTCATGAGTGCATCTCTCCATATGAA-ACGGAGAATTCTTCGAGTCACAATGTAAGAAAAG-TTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTA</genome_strand>
        <mrna_strand>CTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAAACCTGGCTCCGAGATACCGGTTACCTCGAAATTCTCGATCAACGGACTACCGATCTCCACCGCCACTCCTCCACCACCGCGGCGGCGGCGACGACCGCTTCCTCCGACACTGCTGTTACTAATTCTGCCGCAGCCGCGGTTTCAATCTCAAATGGAGTCTTCGTTCTCATATTTTCACGTATTGGAACCTTACTGTCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACCTCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCTCTCTTCGTCCTCTTCTTTGCTTGTTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTAGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCAGCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGTTATTCTATTCTGTACCAATGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG...............................................................................................TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCGAAACAATCAACTTCAAAAGATGGAAACAGGAGGGTCCTGAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAACCACATAGTCGTCGCCTGGAGAGAGGGTAAACCGTGTTTACAAACTATAGCATACGAGTCTTGGTTCATGAGTACATCTCTCGGTTTGAACTCAGAAAATTCTTCGAGTTACAATGTAAGAAAAGCTTTCTTCTTCTTCTTATTTTAAGTTTAGGTTGTATGTATAAGTCTATACAAT-GGAGAAAAAAAGACTAGATAAGATTGTAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTATTTTGCTATATGAATTAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9070" ref_strand="+" ref_description="SGN-M9070 C2_At5g53880 [cosii_markers]">
      <seq>gaagttcttgttccaatgtccatgttgttcttgtttttgtttcatgaagccccaaaaaggaaaaccaaaagccaaagaagaagcaaaacctaaagccaaagttgaagaagcaaaacctaaagataagaaggtagaagaagaaaaaccaaaagagaaagaagaaagcaagccacaatgaaagaagaggcaatgagataatgcaactatatattatgctcatacaagtaatattgttcttcatttacttctagtttaaaatatttattgtgtgctattgcaatctttaactcttttgagaaaaacctcatcctaaatgtattcttataaaaaaaatatttgcactttattcactatgatgatgaaatgcatacctagtagtcattattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0120K04-07md1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0120K04.1" temp_strand="+" temp_description="C12HBa0120K04.1  AC217245.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0120K04 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100253" stop="101245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100553" g_stop="100950" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0120K04.1" gen_strand="+" ref_id="SGN-M9070" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0120K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100553" e_stop="100950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAACTATATTTGG</genome_strand>
        <mrna_strand>GAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="65189" PGL_stop="67800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65189" e_stop="66727"/>
            <exon e_start="66802" e_stop="66870"/>
            <exon e_start="67536" e_stop="67800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.986"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="65189" e_stop="66727" e_length="1539"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66728" i_stop="66801" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="66802" e_stop="66870" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66871" i_stop="67535" i_length="665"/>
          </intron>
          <exon e_serial="3" e_score="0.906">
            <gDNA_exon_boundary e_start="67536" e_stop="67800" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65189" stop="66727"/>
              <exon start="66802" stop="66870"/>
              <exon start="67536" stop="67800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGACCTGAAACTTGAGATATTTTCCCTGGGTGATGTTTCAAAAACTGTTGGAAAGCTTCTAACAGACATGTCAAGTCTTTATGATGTTGGTCGACGTAAGAGATCTGCAGGGCTATTACTCATTGACCGCACTCTTGACCTTCTTACTCCATGCTGTCATGGGGATTCACTTGTGGATCAAATGTTTTCATCATTGCCTCACAGAGAACGGATGGCATCCTTAAGTCAAGCTAAAAGCTCCCGAAGCCAGGTTAAACTAGGCCCTGCTTACTTACAGCGTTCACCCCTCACCGTACAGATACCACTCAATAATTTCCTAAGAGAGGATACTTCAAGTTCTTACAACTTTCAGCTGGTGGAAAGCGTTGAAGCATTTCTCCGTGGTTGGAATTCAAGAGACTCAACTTCTCAGATGGACGAGTTGGTGAATTTTAGCACTAAACCTAGTGGTGAAATGTCCACACAAGATTTTCAGAGTGACCTTCTTTGTGGTTCTTTCGTCTCTACGGAAAATTTTCATGGAACACCGTACCTAGAAGCCATACTAGAGCGAAGATCAAAAGATGGGGCCGTGCTGATCAAGAAATGGCTGCAAGAAAGTTTACGTCGAGAAAATGTATCATTGAATGCAAAAATCCGTCCTGGTTATGCTTCAAAATCAGATCTGCAGACTATGATTAAGGCATTAGCTAAAAGCCAGTCACTGCTGGCGAAAAACAAAGGAATTATCCAGCTAGCTGCAGCAGCACTATCTGCACTAGATGAGTCACATAGTGCTAAATGGGATGCATTTAGCAGTGCTGAGAAGATACTGAATGTAAATGCTGGGGACACGAGCCAAAGTCTTGCTGCTCAAATTAGTGATCTCATAAATAAAAGTGCGTTAGTTAGTTCACAGGGTAATAACAAAATGGATGCTCAACGGGGGCTTCTTACTCTACAAGATGCTCTGCTACTCACAGTTGTTGGATATATATTGGCAGGTGAGAATTTCCCATCTTCTGGGACTGTTGGTCCTTTCTCTTGGCAAGAGGAACATTTTATGAAAGAAGCAATTGTTGATGCGATTATTGAGAACCCAACAGTTGCGAAATTAAAGTTTCTGAAAGGTTTAACTCAGGATCTAGAAGCCAACTTTAACAGAAAATCAGAAGAGAAGAAGGAAGATCTTTCTAATACTGAAAGCATTGATTTTGATGATGACGATTGGGGTAGTTGGGGTGATGAAGATTCTGGAAAAGATAAAAGAAAAGAGCAAGTGTATGATGACATGCAATTGAAGTTAGAACTACGTGATAGGGTGGATAATCTATTCAAATTTTTTCACAAATTGTCCAGCTTTAAAAAGAATGTTTCATTCAGAGAGTGGTCACAGGCTCTTAGTAAGTTCAATGATGATCCTTACTCAAACAAAGGACTGCTTTATAAAGTGCTATCAAGGGTGTTAGATAAGCATGAAGTACCTGGCTTAGAGTATCATTCATCTACTGTTGGCCGCCTATTCAAAAGCGGGTTTGGGAGATTTGGTCTTGGGCAG : GCAAAACCAAGTCTGGCAGATCACGATGTTATTCTCGTGTTTGTTGTGGGAGGCATAAATGGTGTAGAG : GTTCGAGAAGCTCAGGAGGCATTATCTGAGAGCAGCAGGCCTGAAGTCGAATTAATTTTAGGTGGAACAACTTTTCTTACACCTAAAGATATGTTTGAACTACTGCTGGGCGATTATTGTTGTGTGTAAGGCTGTGTAGCTTTCTAGTTTTGTTATGTAAAGTTTAAGATGACAAGTTCTGTCTAATGTCTGATATTTAGAGAATACAAAACTTTTCCTTAATGTAAACAGCATTGGAACTTATATGATTTTCAATATATTTTTC</gDNA_template>
            <first_frame> M  D  L  K  L  E  I  F  S  L  G  D  V  S  K  T  V  G  K  L  L  T  D  M  S  S  L  Y  D  V  G  R  R  K  R  S  A  G  L  L  L  I  D  R  T  L  D  L  L  T  P  C  C  H  G  D  S  L  V  D  Q  M  F  S  S  L  P  H  R  E  R  M  A  S  L  S  Q  A  K  S  S  R  S  Q  V  K  L  G  P  A  Y  L  Q  R  S  P  L  T  V  Q  I  P  L  N  N  F  L  R  E  D  T  S  S  S  Y  N  F  Q  L  V  E  S  V  E  A  F  L  R  G  W  N  S  R  D  S  T  S  Q  M  D  E  L  V  N  F  S  T  K  P  S  G  E  M  S  T  Q  D  F  Q  S  D  L  L  C  G  S  F  V  S  T  E  N  F  H  G  T  P  Y  L  E  A  I  L  E  R  R  S  K  D  G  A  V  L  I  K  K  W  L  Q  E  S  L  R  R  E  N  V  S  L  N  A  K  I  R  P  G  Y  A  S  K  S  D  L  Q  T  M  I  K  A  L  A  K  S  Q  S  L  L  A  K  N  K  G  I  I  Q  L  A  A  A  A  L  S  A  L  D  E  S  H  S  A  K  W  D  A  F  S  S  A  E  K  I  L  N  V  N  A  G  D  T  S  Q  S  L  A  A  Q  I  S  D  L  I  N  K  S  A  L  V  S  S  Q  G  N  N  K  M  D  A  Q  R  G  L  L  T  L  Q  D  A  L  L  L  T  V  V  G  Y  I  L  A  G  E  N  F  P  S  S  G  T  V  G  P  F  S  W  Q  E  E  H  F  M  K  E  A  I  V  D  A  I  I  E  N  P  T  V  A  K  L  K  F  L  K  G  L  T  Q  D  L  E  A  N  F  N  R  K  S  E  E  K  K  E  D  L  S  N  T  E  S  I  D  F  D  D  D  D  W  G  S  W  G  D  E  D  S  G  K  D  K  R  K  E  Q  V  Y  D  D  M  Q  L  K  L  E  L  R  D  R  V  D  N  L  F  K  F  F  H  K  L  S  S  F  K  K  N  V  S  F  R  E  W  S  Q  A  L  S  K  F  N  D  D  P  Y  S  N  K  G  L  L  Y  K  V  L  S  R  V  L  D  K  H  E  V  P  G  L  E  Y  H  S  S  T  V  G  R  L  F  K  S  G  F  G  R  F  G  L  G  Q  :  A  K  P  S  L  A  D  H  D  V  I  L  V  F  V  V  G  G  I  N  G  V  E  :  V  R  E  A  Q  E  A  L  S  E  S  S  R  P  E  V  E  L  I  L  G  G  T  T  F  L  T  P  K  D  M  F  E  L  L  L  G  D  Y  C  C  V  *  G  C  V  A  F  *  F  C  Y  V  K  F  K  M  T  S  S  V  *  C  L  I  F  R  E  Y  K  T  F  P  *  C  K  Q  H  W  N  L  Y  D  F  Q  Y  I  F  </first_frame>
            <second_frame>  W  T  *  N  L  R  Y  F  P  W  V  M  F  Q  K  L  L  E  S  F  *  Q  T  C  Q  V  F  M  M  L  V  D  V  R  D  L  Q  G  Y  Y  S  L  T  A  L  L  T  F  L  L  H  A  V  M  G  I  H  L  W  I  K  C  F  H  H  C  L  T  E  N  G  W  H  P  *  V  K  L  K  A  P  E  A  R  L  N  *  A  L  L  T  Y  S  V  H  P  S  P  Y  R  Y  H  S  I  I  S  *  E  R  I  L  Q  V  L  T  T  F  S  W  W  K  A  L  K  H  F  S  V  V  G  I  Q  E  T  Q  L  L  R  W  T  S  W  *  I  L  A  L  N  L  V  V  K  C  P  H  K  I  F  R  V  T  F  F  V  V  L  S  S  L  R  K  I  F  M  E  H  R  T  *  K  P  Y  *  S  E  D  Q  K  M  G  P  C  *  S  R  N  G  C  K  K  V  Y  V  E  K  M  Y  H  *  M  Q  K  S  V  L  V  M  L  Q  N  Q  I  C  R  L  *  L  R  H  *  L  K  A  S  H  C  W  R  K  T  K  E  L  S  S  *  L  Q  Q  H  Y  L  H  *  M  S  H  I  V  L  N  G  M  H  L  A  V  L  R  R  Y  *  M  *  M  L  G  T  R  A  K  V  L  L  L  K  L  V  I  S  *  I  K  V  R  *  L  V  H  R  V  I  T  K  W  M  L  N  G  G  F  L  L  Y  K  M  L  C  Y  S  Q  L  L  D  I  Y  W  Q  V  R  I  S  H  L  L  G  L  L  V  L  S  L  G  K  R  N  I  L  *  K  K  Q  L  L  M  R  L  L  R  T  Q  Q  L  R  N  *  S  F  *  K  V  *  L  R  I  *  K  P  T  L  T  E  N  Q  K  R  R  R  K  I  F  L  I  L  K  A  L  I  L  M  M  T  I  G  V  V  G  V  M  K  I  L  E  K  I  K  E  K  S  K  C  M  M  T  C  N  *  S  *  N  Y  V  I  G  W  I  I  Y  S  N  F  F  T  N  C  P  A  L  K  R  M  F  H  S  E  S  G  H  R  L  L  V  S  S  M  M  I  L  T  Q  T  K  D  C  F  I  K  C  Y  Q  G  C  *  I  S  M  K  Y  L  A  *  S  I  I  H  L  L  L  A  A  Y  S  K  A  G  L  G  D  L  V  L  G  R :   Q  N  Q  V  W  Q  I  T  M  L  F  S  C  L  L  W  E  A  *  M  V  *  R :   F  E  K  L  R  R  H  Y  L  R  A  A  G  L  K  S  N  *  F  *  V  E  Q  L  F  L  H  L  K  I  C  L  N  Y  C  W  A  I  I  V  V  C  K  A  V  *  L  S  S  F  V  M  *  S  L  R  *  Q  V  L  S  N  V  *  Y  L  E  N  T  K  L  F  L  N  V  N  S  I  G  T  Y  M  I  F  N  I  F  F </second_frame>
            <third_frame>   G  P  E  T  *  D  I  F  P  G  *  C  F  K  N  C  W  K  A  S  N  R  H  V  K  S  L  *  C  W  S  T  *  E  I  C  R  A  I  T  H  *  P  H  S  *  P  S  Y  S  M  L  S  W  G  F  T  C  G  S  N  V  F  I  I  A  S  Q  R  T  D  G  I  L  K  S  S  *  K  L  P  K  P  G  *  T  R  P  C  L  L  T  A  F  T  P  H  R  T  D  T  T  Q  *  F  P  K  R  G  Y  F  K  F  L  Q  L  S  A  G  G  K  R  *  S  I  S  P  W  L  E  F  K  R  L  N  F  S  D  G  R  V  G  E  F  *  H  *  T  *  W  *  N  V  H  T  R  F  S  E  *  P  S  L  W  F  F  R  L  Y  G  K  F  S  W  N  T  V  P  R  S  H  T  R  A  K  I  K  R  W  G  R  A  D  Q  E  M  A  A  R  K  F  T  S  R  K  C  I  I  E  C  K  N  P  S  W  L  C  F  K  I  R  S  A  D  Y  D  *  G  I  S  *  K  P  V  T  A  G  E  K  Q  R  N  Y  P  A  S  C  S  S  T  I  C  T  R  *  V  T  *  C  *  M  G  C  I  *  Q  C  *  E  D  T  E  C  K  C  W  G  H  E  P  K  S  C  C  S  N  *  *  S  H  K  *  K  C  V  S  *  F  T  G  *  *  Q  N  G  C  S  T  G  A  S  Y  S  T  R  C  S  A  T  H  S  C  W  I  Y  I  G  R  *  E  F  P  I  F  W  D  C  W  S  F  L  L  A  R  G  T  F  Y  E  R  S  N  C  *  C  D  Y  *  E  P  N  S  C  E  I  K  V  S  E  R  F  N  S  G  S  R  S  Q  L  *  Q  K  I  R  R  E  E  G  R  S  F  *  Y  *  K  H  *  F  *  *  *  R  L  G  *  L  G  *  *  R  F  W  K  R  *  K  K  R  A  S  V  *  *  H  A  I  E  V  R  T  T  *  *  G  G  *  S  I  Q  I  F  S  Q  I  V  Q  L  *  K  E  C  F  I  Q  R  V  V  T  G  S  *  *  V  Q  *  *  S  L  L  K  Q  R  T  A  L  *  S  A  I  K  G  V  R  *  A  *  S  T  W  L  R  V  S  F  I  Y  C  W  P  P  I  Q  K  R  V  W  E  I  W  S  W  A   : G  K  T  K  S  G  R  S  R  C  Y  S  R  V  C  C  G  R  H  K  W  C  R   : G  S  R  S  S  G  G  I  I  *  E  Q  Q  A  *  S  R  I  N  F  R  W  N  N  F  S  Y  T  *  R  Y  V  *  T  T  A  G  R  L  L  L  C  V  R  L  C  S  F  L  V  L  L  C  K  V  *  D  D  K  F  C  L  M  S  D  I  *  R  I  Q  N  F  S  L  M  *  T  A  L  E  L  I  *  F  S  I  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65189" stop="66727"/>
                    <exon start="66802" stop="66870"/>
                    <exon start="67536" stop="67664"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDLKLEIFSLGDVSKTVGKLLTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDQMFSSLPHRERMASLSQAKSSRSQVKLGPAYLQRSPLTVQIPLNNFLREDTSSSYNFQLVESVEAFLRGWNSRDSTSQMDELVNFSTKPSGEMSTQDFQSDLLCGSFVSTENFHGTPYLEAILERRSKDGAVLIKKWLQESLRRENVSLNAKIRPGYASKSDLQTMIKALAKSQSLLAKNKGIIQLAAAALSALDESHSAKWDAFSSAEKILNVNAGDTSQSLAAQISDLINKSALVSSQGNNKMDAQRGLLTLQDALLLTVVGYILAGENFPSSGTVGPFSWQEEHFMKEAIVDAIIENPTVAKLKFLKGLTQDLEANFNRKSEEKKEDLSNTESIDFDDDDWGSWGDEDSGKDKRKEQVYDDMQLKLELRDRVDNLFKFFHKLSSFKKNVSFREWSQALSKFNDDPYSNKGLLYKVLSRVLDKHEVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADHDVILVFVVGGINGVEVREAQEALSESSRPEVELILGGTTFLTPKDMFELLLGDYCCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="92391" PGL_stop="97267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92391" e_stop="92852"/>
            <exon e_start="93500" e_stop="93644"/>
            <exon e_start="93740" e_stop="93751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.493" e_score="0.992"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92391" e_stop="92852" e_length="462"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="93500" e_stop="93644" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.493">
            <gDNA_intron_boundary i_start="93645" i_stop="93739" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="93740" e_stop="93751" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92391" stop="92852"/>
              <exon start="93500" stop="93644"/>
              <exon start="93740" stop="93751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92852"/>
              <exon start="93500" stop="93624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCGTTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT : GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTGGTGAGTCG : CATTCTACCAGT</gDNA_template>
            <first_frame> K  N  G  V  L  S  *  P  V  I  S  E  C  T  R  T  R  I  R  I  L  A  P  R  Y  W  L  P  R  N  S  R  S  T  D  H  R  S  P  P  P  L  L  H  H  H  R  G  G  D  D  C  F  L  R  R  C  C  Y  *  F  C  C  S  R  G  V  N  F  K  W  S  L  R  S  N  I  F  T  Y  W  N  L  I  I  A  F  N  A  *  S  V  C  K  T  H  I  *  *  L  F  R  *  Y  P  V  V  D  P  P  I  R  R  V  I  R  F  L  L  I  S  F  V  A  V  S  G  S  A  *  S  T  R  E  C  E  T  L  C  S  E  L  C  L  P  L  C  P  L  L  C  L  L  S  :  V  P  K  A  V  C  P  C  W  V  D  I  M  F  G  T  L  G  C  I  K  V  M  W  R  S  L  G  I  R  A  P  P  S  Y  Q  T  K  L  D  S  H  C  S  V  W  *  V   : A  F  Y  Q  </first_frame>
            <second_frame>  K  M  A  F  S  A  N  P  L  S  L  S  V  P  E  P  V  F  E  S  W  L  R  D  T  G  Y  L  E  I  L  D  Q  R  T  T  D  L  H  R  H  S  S  T  T  T  V  A  A  T  T  A  S  S  D  A  A  V  T  N  S  A  A  A  A  V  S  I  S  N  G  V  F  V  L  I  F  S  R  I  G  T  L  L  S  L  L  T  L  N  P  F  A  K  L  T  S  D  D  F  S  G  D  T  P  S  W  T  L  Q  F  V  G  S  F  D  S  Y  S  F  P  S  S  P  S  Q  A  R  L  R  V  H  E  N  V  K  R  Y  A  R  N  Y  A  S  L  F  V  L  F  F  A  C  S  L :   Y  Q  K  L  F  A  L  V  G  L  I  S  C  L  A  L  W  D  V  L  K  L  C  G  D  R  W  G  L  E  H  R  P  V  I  K  Q  S  L  I  R  I  A  Q  C  G  E  S  :  H  S  T  S </second_frame>
            <third_frame>   K  W  R  S  Q  L  T  R  Y  L  *  V  Y  P  N  P  Y  S  N  P  G  S  E  I  L  A  T  S  K  F  S  I  N  G  P  P  I  S  T  A  T  P  P  P  P  P  W  R  R  R  L  L  P  P  T  L  L  L  L  I  L  L  Q  P  R  C  Q  F  Q  M  E  S  S  F  *  Y  F  H  V  L  E  P  Y  Y  R  F  *  R  L  I  R  L  Q  N  S  H  L  M  T  F  P  V  I  P  R  R  G  P  S  N  S  S  G  H  S  I  P  T  H  F  L  R  R  R  L  R  L  G  L  E  Y  T  R  M  *  N  A  M  L  G  I  M  P  P  S  L  S  S  S  L  L  A  L   : C  T  K  S  C  L  P  L  L  G  *  Y  H  V  W  H  F  G  M  Y  *  S  Y  V  E  I  A  G  D  *  S  T  A  Q  L  S  N  K  A  *  F  A  L  L  S  V  V  S  R :   I  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92392" stop="92852"/>
                    <exon start="93500" stop="93644"/>
                    <exon start="93740" stop="93751"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAFSANPLSLSVPEPVFESWLRDTGYLEILDQRTTDLHRHSSTTTVAATTASSDAAVTNSAAAAVSISNGVFVLIFSRIGTLLSLLTLNPFAKLTSDDFSGDTPSWTLQFVGSFDSYSFPSSPSQARLRVHENVKRYARNYASLFVLFFACSLYQKLFALVGLISCLALWDVLKLCGDRWGLEHRPVIKQSLIRIAQCGESHSTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92401" e_stop="92852"/>
            <exon e_start="93500" e_stop="93636"/>
            <exon e_start="96708" e_stop="96779"/>
            <exon e_start="96875" e_stop="97267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.986"/>
          <exon-only e_score="0.885"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92401" e_stop="92852" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="92853" i_stop="93499" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="93500" e_stop="93636" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93637" i_stop="96707" i_length="3071"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="96708" e_stop="96779" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96780" i_stop="96874" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.885">
            <gDNA_exon_boundary e_start="96875" e_stop="97267" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92401" stop="92852"/>
              <exon start="93500" stop="93624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92403" stop="92852"/>
              <exon start="93500" stop="93636"/>
              <exon start="96708" stop="96779"/>
              <exon start="96875" stop="97267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8378-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCAGCTAACCCGTTATCTCTGAGTGTACCCGAACCCGTATTCGAATCCTGGCTCCGAGATACTGGCTACCTCGAAATTCTCGATCAACGGACCACCGATCTCCACCGCCACTCCTCCACCACCACCGTGGCGGCGACGACTGCTTCCTCCGACGCTGCTGTTACTAATTCTGCTGCAGCCGCGGTGTCAATTTCAAATGGAGTCTTCGTTCTAATATTTTCACGTATTGGAACCTTATTATCGCTTTTAACGCTTAATCCGTTTGCAAAACTCACATCTGATGACTTTTCCGGTGATACCCCGTCGTGGACCCTCCAATTCGTCGGGTCATTCGATTCCTACTCATTTCCTTCGTCGCCGTCTCAGGCTCGGCTTAGAGTACACGAGAATGTGAAACGCTATGCTCGGAATTATGCCTCCCTCTTTGTCCTCTTCTTTGCTTGCTCTCT : GTACCAAAAGCTGTTTGCCCTTGTTGGGTTGATATCATGTTTGGCACTTTGGGATGTATTAAAGTTATGTGGAGATCGCTGGGGATTAGAGCACCGCCCAGTTATCAAACAAAGCTTGATTCGCATTGCTCAGTGTG : CTACTGCAGTTATTCTATTCTGTACCAACGTTCAAATGGCTCTCTTCTCAGCTCTTGCGGTCAGTTATGTAG : TGATGATTCTGCATGCCTCATTTAGGAAGCTGACCCCCTCAAAACAATCAACTTCAAAAGAAGTGAACAGGAGGGTCCTTAGAAGTTGATGAGTGGTTATTATTGTCAAGTCATACAATCACATAGTCGTTGCCTGGAGAGAGGGTTAACCGTGTTTACAAACTATAGCATTCGAGTCTGGCTCATGAGTGCATCTCTCCATATGAAACGGAGAATTCTTCGAGTCACAATGTAAGAAAAGTTTCTTCTTTAATTTGATTTTTTTTTAGGATGTGTGTATGTGTCTGTACAATGGGAAAAAAAAAGACTAGATAAGATTTCAGATGGGTGTAGAACCCTAAAGAGAATTGGCACTGCTAAGGCTTTGTTCTTTTACTATATGAATTAGTATTA</gDNA_template>
            <first_frame> F  S  A  N  P  L  S  L  S  V  P  E  P  V  F  E  S  W  L  R  D  T  G  Y  L  E  I  L  D  Q  R  T  T  D  L  H  R  H  S  S  T  T  T  V  A  A  T  T  A  S  S  D  A  A  V  T  N  S  A  A  A  A  V  S  I  S  N  G  V  F  V  L  I  F  S  R  I  G  T  L  L  S  L  L  T  L  N  P  F  A  K  L  T  S  D  D  F  S  G  D  T  P  S  W  T  L  Q  F  V  G  S  F  D  S  Y  S  F  P  S  S  P  S  Q  A  R  L  R  V  H  E  N  V  K  R  Y  A  R  N  Y  A  S  L  F  V  L  F  F  A  C  S  L :   Y  Q  K  L  F  A  L  V  G  L  I  S  C  L  A  L  W  D  V  L  K  L  C  G  D  R  W  G  L  E  H  R  P  V  I  K  Q  S  L  I  R  I  A  Q  C   : A  T  A  V  I  L  F  C  T  N  V  Q  M  A  L  F  S  A  L  A  V  S  Y  V   : V  M  I  L  H  A  S  F  R  K  L  T  P  S  K  Q  S  T  S  K  E  V  N  R  R  V  L  R  S  *  *  V  V  I  I  V  K  S  Y  N  H  I  V  V  A  W  R  E  G  *  P  C  L  Q  T  I  A  F  E  S  G  S  *  V  H  L  S  I  *  N  G  E  F  F  E  S  Q  C  K  K  S  F  F  F  N  L  I  F  F  *  D  V  C  M  C  L  Y  N  G  K  K  K  D  *  I  R  F  Q  M  G  V  E  P  *  R  E  L  A  L  L  R  L  C  S  F  T  I  *  I  S  I  </first_frame>
            <second_frame>  S  Q  L  T  R  Y  L  *  V  Y  P  N  P  Y  S  N  P  G  S  E  I  L  A  T  S  K  F  S  I  N  G  P  P  I  S  T  A  T  P  P  P  P  P  W  R  R  R  L  L  P  P  T  L  L  L  L  I  L  L  Q  P  R  C  Q  F  Q  M  E  S  S  F  *  Y  F  H  V  L  E  P  Y  Y  R  F  *  R  L  I  R  L  Q  N  S  H  L  M  T  F  P  V  I  P  R  R  G  P  S  N  S  S  G  H  S  I  P  T  H  F  L  R  R  R  L  R  L  G  L  E  Y  T  R  M  *  N  A  M  L  G  I  M  P  P  S  L  S  S  S  L  L  A  L   : C  T  K  S  C  L  P  L  L  G  *  Y  H  V  W  H  F  G  M  Y  *  S  Y  V  E  I  A  G  D  *  S  T  A  Q  L  S  N  K  A  *  F  A  L  L  S  V  :  L  L  Q  L  F  Y  S  V  P  T  F  K  W  L  S  S  Q  L  L  R  S  V  M  *  :  *  *  F  C  M  P  H  L  G  S  *  P  P  Q  N  N  Q  L  Q  K  K  *  T  G  G  S  L  E  V  D  E  W  L  L  L  S  S  H  T  I  T  *  S  L  P  G  E  R  V  N  R  V  Y  K  L  *  H  S  S  L  A  H  E  C  I  S  P  Y  E  T  E  N  S  S  S  H  N  V  R  K  V  S  S  L  I  *  F  F  F  R  M  C  V  C  V  C  T  M  G  K  K  K  T  R  *  D  F  R  W  V  *  N  P  K  E  N  W  H  C  *  G  F  V  L  L  L  Y  E  L  V  L </second_frame>
            <third_frame>   L  S  *  P  V  I  S  E  C  T  R  T  R  I  R  I  L  A  P  R  Y  W  L  P  R  N  S  R  S  T  D  H  R  S  P  P  P  L  L  H  H  H  R  G  G  D  D  C  F  L  R  R  C  C  Y  *  F  C  C  S  R  G  V  N  F  K  W  S  L  R  S  N  I  F  T  Y  W  N  L  I  I  A  F  N  A  *  S  V  C  K  T  H  I  *  *  L  F  R  *  Y  P  V  V  D  P  P  I  R  R  V  I  R  F  L  L  I  S  F  V  A  V  S  G  S  A  *  S  T  R  E  C  E  T  L  C  S  E  L  C  L  P  L  C  P  L  L  C  L  L  S  :  V  P  K  A  V  C  P  C  W  V  D  I  M  F  G  T  L  G  C  I  K  V  M  W  R  S  L  G  I  R  A  P  P  S  Y  Q  T  K  L  D  S  H  C  S  V  C :   Y  C  S  Y  S  I  L  Y  Q  R  S  N  G  S  L  L  S  S  C  G  Q  L  C  S :   D  D  S  A  C  L  I  *  E  A  D  P  L  K  T  I  N  F  K  R  S  E  Q  E  G  P  *  K  L  M  S  G  Y  Y  C  Q  V  I  Q  S  H  S  R  C  L  E  R  G  L  T  V  F  T  N  Y  S  I  R  V  W  L  M  S  A  S  L  H  M  K  R  R  I  L  R  V  T  M  *  E  K  F  L  L  *  F  D  F  F  L  G  C  V  Y  V  S  V  Q  W  E  K  K  R  L  D  K  I  S  D  G  C  R  T  L  K  R  I  G  T  A  K  A  L  F  F  Y  Y  M  N  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0120K04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92401" stop="92852"/>
                    <exon start="93500" stop="93636"/>
                    <exon start="96708" stop="96779"/>
                    <exon start="96875" stop="96963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSANPLSLSVPEPVFESWLRDTGYLEILDQRTTDLHRHSSTTTVAATTASSDAAVTNSAAAAVSISNGVFVLIFSRIGTLLSLLTLNPFAKLTSDDFSGDTPSWTLQFVGSFDSYSFPSSPSQARLRVHENVKRYARNYASLFVLFFACSLYQKLFALVGLISCLALWDVLKLCGDRWGLEHRPVIKQSLIRIAQCATAVILFCTNVQMALFSALAVSYVVMILHASFRKLTPSKQSTSKEVNRRVLRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="100553" PGL_stop="100950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100553" e_stop="100950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="100553" e_stop="100950" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100553" stop="100950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTCTTGTTCCAATGTCCATGTTGTTCTTGTTTTTGTTTCATGAAGCCCCAAAAAGGAAAACCAAAAGCCAAAGAAGAAGCAAAACCTAAAGCCAAAGTTGAAGAAGCAAAACCTAAAGATAAGAAGGTAGAAGAAGAAAAACCAAAAGAGAAAGAAGAAAGCAAGCCACAATGAAAGAAGAGGCAATGAGATAATGCAACTATATATTATGCTCATACAAGTAATATTGTTCTTCATTTACTTCTAGTTTAAAATATTTATTGTGTGCTATTGCAATCTTTAACTCTTTTGAGAAAAACCTCATCCTAAATGTATTCTTATAAAAAAAATATTTGCACTTTATTCACTATGATGATGAAATGCATACCTAGTAGTCATTATTAACTATATTTGG</gDNA_template>
            <first_frame> E  V  L  V  P  M  S  M  L  F  L  F  L  F  H  E  A  P  K  R  K  T  K  S  Q  R  R  S  K  T  *  S  Q  S  *  R  S  K  T  *  R  *  E  G  R  R  R  K  T  K  R  E  R  R  K  Q  A  T  M  K  E  E  A  M  R  *  C  N  Y  I  L  C  S  Y  K  *  Y  C  S  S  F  T  S  S  L  K  Y  L  L  C  A  I  A  I  F  N  S  F  E  K  N  L  I  L  N  V  F  L  *  K  K  Y  L  H  F  I  H  Y  D  D  E  M  H  T  *  *  S  L  L  T  I  F   </first_frame>
            <second_frame>  K  F  L  F  Q  C  P  C  C  S  C  F  C  F  M  K  P  Q  K  G  K  P  K  A  K  E  E  A  K  P  K  A  K  V  E  E  A  K  P  K  D  K  K  V  E  E  E  K  P  K  E  K  E  E  S  K  P  Q  *  K  K  R  Q  *  D  N  A  T  I  Y  Y  A  H  T  S  N  I  V  L  H  L  L  L  V  *  N  I  Y  C  V  L  L  Q  S  L  T  L  L  R  K  T  S  S  *  M  Y  S  Y  K  K  N  I  C  T  L  F  T  M  M  M  K  C  I  P  S  S  H  Y  *  L  Y  L  </second_frame>
            <third_frame>   S  S  C  S  N  V  H  V  V  L  V  F  V  S  *  S  P  K  K  E  N  Q  K  P  K  K  K  Q  N  L  K  P  K  L  K  K  Q  N  L  K  I  R  R  *  K  K  K  N  Q  K  R  K  K  K  A  S  H  N  E  R  R  G  N  E  I  M  Q  L  Y  I  M  L  I  Q  V  I  L  F  F  I  Y  F  *  F  K  I  F  I  V  C  Y  C  N  L  *  L  F  *  E  K  P  H  P  K  C  I  L  I  K  K  I  F  A  L  Y  S  L  *  *  *  N  A  Y  L  V  V  I  I  N  Y  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0120K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 16280 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 3256 bytes was the average size of a spliced alignment
$ 8192 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2730 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 11:27:26
-->
