<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:18:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10079" stop="8908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9779" g_stop="9205" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9779" e_stop="9205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCATTCTCTCTCTTT-TGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACTCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAGGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGA--CAATTTCCACCAAAGAGTCTGTGATGGTTCGTCACGCCCGTGATGGTTCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTCAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACGGGTCGTTACAAAC</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGA-CG---GTC-C--------------GTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10080" stop="8908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9780" g_stop="9217" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9780" e_stop="9217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCATTCTCTCTCTTT-TGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACTCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAGGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGA--CAATTTCCACCAAAGAGTCTGTGATGGTTCGTCACGCCCGTGATGGTTCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTCAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACGG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGA-CG---GT--C-------------CGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396054" ref_strand="+" ref_description="SGN-E396054 [TUS-18-N18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10080" stop="8908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9780" g_stop="9217" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E396054" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9780" e_stop="9217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCATTCTCTCTCTTT-TGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACTCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAGGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGA--CAATTTCCACCAAAGAGTCTGTGATGGTTCGTCACGCCCGTGATGGTTCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTCAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACGG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGA-CG---GT--C-------------CGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10079" stop="8919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9779" g_stop="9218" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9779" e_stop="9218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCATTCTCTCTCTTT-TGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACTCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAGGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGA--CAATTTCCACCAAAGAGTCTGTGATGGTTCGTCACGCCCGTGATGGTTCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTCAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACG</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGA-CG---GTC-C--------------GTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10079" stop="8991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9779" g_stop="9291" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9779" e_stop="9291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCATTCTCTCTCTTT-TGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACTCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAGGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGA--CAATTTCCACCAAAGAGTCTGTGATGGTTCGTCACGCCCGTGATGGTTCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTCAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGA-CG---GTC-C--------------GTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="9540" stop="11053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9840" g_stop="10155" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10156" i_stop="10349" i_length="194">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10350" g_stop="10753" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="717" r_length="402" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9840" e_stop="10155"/>
          <exon e_start="10350" e_stop="10753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGGTACCAGGATAGTATATGAGGATCAGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCATGTTTCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAATCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGG-GTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGG..................................................................................................................................................................................................GTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="9540" stop="10772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9840" g_stop="10155" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10156" i_stop="10559" i_length="404">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10560" g_stop="10648" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9840" e_stop="10155"/>
          <exon e_start="10560" e_stop="10648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGGTACCAGGATAGTATATGAGGATCAGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCATGTTTCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAATCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAG-GTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10298" stop="11135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10598" g_stop="10835" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10598" e_stop="10835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTATTTAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGCT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="10299" stop="11371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10599" g_stop="11073" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10599" e_stop="11073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTATTTAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTA---CTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTT-G-ATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGAATCAACAGTAACTCTAGCTATTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTATGTTATGTT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554623" ref_strand="+" ref_description="SGN-E554623 [cTSC-4-O12]">
      <seq>cgcaacactttactttcatctataaatccataaattatccacttttttccactcaaatcgccttaaatcagctcaatttagctttttcacggctgaaatctgatcaatttgaagttttttcgatgaaaaatgatgagtttgagagtttttgtgagggttttgttcggtggagtacagtgaggtgatggaagctttgaaaggacctgttttggttgatgtggatgtgtctaagcttatgggatcggaaagttttagtggcggtgctaggaaattggagaggccttctgttgcgattgcgccttctattggaaggatcagtggttcagtcagacgaaaagagcaagctttttggagtaagatgccccagaatgaatttgctggtcagcaatccagacatcatgttgaggatgcttcagaagaccacagtgtcgggaagacgagtactgttcttccactgacgcttgggctagaggctgcacagtcacatcggaactgtgggaaagtggggagaaatagtacttctaattctaagagatcaaggataatgcagatggatgctcctgtaaataaaaccggtgaagacggaaaaggcctttctactgagatttccgcaaatcttacaaattgcaaaaatggaggattcacagtggcatggaacaggttgagctcatggttttattgtttctgaacatcactacagtcctatgataccctgtgttagttatgcttgaaaacttcaaagaaagcaacacattagtttgagaaaaattagaattccaaaagtttccctttcaaaagtgcacttctttctgattaagttggaattagtttgagaagaaagctattgggacacttcccccatgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="16589" stop="19154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16889" g_stop="17226" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17227" i_stop="18021" i_length="795">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18022" g_stop="18321" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="638" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18322" i_stop="18625" i_length="304">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18626" g_stop="18854" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="867" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E554623" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16889" e_stop="17226"/>
          <exon e_start="18022" e_stop="18321"/>
          <exon e_start="18626" e_stop="18854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACACTTTACTTTCATCTATAAATCCATAAATTATCCACTTTTTTCCACTCAAATCGCCTTAAATCAGCTCAATTTAGCTTTTTCACGGCTGAAATCTGATCAATTTGAAGTTTTTTCGATGAAAAATGATGAGTTTGAGAGTTTTTGTGAGGGTTTTGTTCGGTGGAGTACAGTGAGGTGATGGAAGCTTTGAAAGGACCTGTTTTGGTTGATGTGGATGTGTCTAAGCTTATGGGATCGGAAAGTTTTAGTGGCGGTGCTAGGAAATTGGAGAGGCCTTCTGTTGCGATTGCGCCTTCTATTGGAAGGATCAGTGGTTCAGTCAGACGAAAAGGTATCATTTCCCCTTTTTTAATAACTCTTGGCCGGAATTAACCATGAAGAGATTTTTACACTGTTTGTCTGGTAAGGCCGGTTTTCCTTATACTGGGTCACCTCCCATCATTTCTAGGTTAATTGTGTAAAAAAGAGGAAAGTTTCTTTTTCAGGGTTGAATATGGCTTATTTACTCTTTACCAGTAAGAACTGACATTTCTTTTTTAATTTTTTGTCATAAAAGTTAGCTTTGGTTGTTATGACAGTTTATGGAGGTTTAGTGTAGTGTAAGATTTTATGGGTAGATAGATGTTATAATTTGGATATTCTCTTGAACTAACTGAAATTGCTATAGACGGTTAATGGCAAGTTAAGATGTTGAAGTTTCTTGAGATGATTTTTACTCTTGATATACCCAGTCTTTAAGGGGAAATTGTTTTGATCTGAATGATATCACTTACTGTTAATAGCTGGATACGGTCAACTATCTGAAAAAAAAAGGTCTGGGTACAGTGTACACTGTTGTGGAAGTTACTAACTGGTGAATTATGTAGTTCATCACAGGACAGTATGAACTTATGAATGGGAAAGGTGATTTTCTAGTAAAAAGATGTCATATGTGTTCTTAGAATGGTTTACGTTGAAACCATTGAACATGTGTATATGTTGTTTTGGTATTTTTTCTGCAACACTAAAGCAGGTAAATGTACAGACCTGAAAACATGTTATGTTATACTGCTAGTGTTGCATCCTATTTAACTCTCTATTCCAAATATGGTTATGTGAGATGTGATTTGTGCTGTTGAAACCTCAGAGCAAGCTTTTTGGAGTAAGATGCCCCAGAATGAATTTGCTGGTCAGCAATCCAGACATCATGTTGAGGATGCTTCAGAAGACCACAGTGTCGGGAAGACGAGTACTGTTCTTCCACTGACGCTTGGGCTAGAGGCTGCACAGTCACATCGGAACTGTGGGAAAGTGGGGAGAAATAGTACTTCTAATTCTAAGAGATCAAGGATAATGCAGATGGATGCTCCTGTAAATAAAACCGGTGAAGACGGAAAAGGCCTTTCTACTGAGATTTCCGCAAATCTTACAAATTGCAAAAATGGAGGTAATACCAATTATATATGTATGTTCTTCAATATAGTTATCCAGTCTTGACTTCAGTTGTGATAGACATTCACAGATGACACTGGAATAAATGCTTATGGTTCATGTATCTTGGTTTGATTTCAAATGTGTCTCCTAGTTGATGATATTTTTTGGTCAAAATCTACTCTATTATAGTGACACATATGGTCAATAGCTTGCAACAGAAATCATGTGTCCAGTATTTTCAGTGCGCACCTATTTGGATAGAGCTATTATTCCTCGGCTTTTCCTTTTTCATTTTTCCTTCAATAATGCGTTTTCAGGATTCACAGTGGCATGGAACAGGTTGAGCTCATGGTTTTATTGTTTCTGAACATCACTACAGTCCTATGATACCCTGTGTTAGTTATGCTTGAAAACTTCAAAGAAAGCAACACATTAGTTTGAGAAAATTAAGAATTCCAAAAGTTTCCCTTTCAAAAAGTGCACTTCTTTCTGATTAAGTTGGAATTAGTTTGAGAAGAAGGCTATT-GGACACTTCCCCCATGCCAT</genome_strand>
        <mrna_strand>CGCAACACTTTACTTTCATCTATAAATCCATAAATTATCCACTTTTTTCCACTCAAATCGCCTTAAATCAGCTCAATTTAGCTTTTTCACGGCTGAAATCTGATCAATTTGAAGTTTTTTCGATGAAAAATGATGAGTTTGAGAGTTTTTGTGAGGGTTTTGTTCGGTGGAGTACAGTGAGGTGATGGAAGCTTTGAAAGGACCTGTTTTGGTTGATGTGGATGTGTCTAAGCTTATGGGATCGGAAAGTTTTAGTGGCGGTGCTAGGAAATTGGAGAGGCCTTCTGTTGCGATTGCGCCTTCTATTGGAAGGATCAGTGGTTCAGTCAGACGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGCTTTTTGGAGTAAGATGCCCCAGAATGAATTTGCTGGTCAGCAATCCAGACATCATGTTGAGGATGCTTCAGAAGACCACAGTGTCGGGAAGACGAGTACTGTTCTTCCACTGACGCTTGGGCTAGAGGCTGCACAGTCACATCGGAACTGTGGGAAAGTGGGGAGAAATAGTACTTCTAATTCTAAGAGATCAAGGATAATGCAGATGGATGCTCCTGTAAATAAAACCGGTGAAGACGGAAAAGGCCTTTCTACTGAGATTTCCGCAAATCTTACAAATTGCAAAAATGGAG................................................................................................................................................................................................................................................................................................................GATTCACAGTGGCATGGAACAGGTTGAGCTCATGGTTTTATTGTTTCTGAACATCACTACAGTCCTATGATACCCTGTGTTAGTTATGCTTGAAAACTTCAAAGAAAGCAACACATTAGTTTGAGAAAAATTAGAATTCCAAAAGTTTCCCTTTC-AAAAGTGCACTTCTTTCTGATTAAGTTGGAATTAGTTTGAGAAGAAAGCTATTGGGACACTTCCCCCATGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586025" ref_strand="+" ref_description="SGN-E586025 [73449]">
      <seq>gagaaatttgtagccaaagaaaacaccaactatgaatgccaatgccagaataaaacgggacactgtattttgggttcacaaggtaaaacaagataatgtcagactgtcagtatcctttaattaaaaaacaagataatgtcagtttctgcaaaagctcataatctatattatttttttcttttcttctcaaaggtacaggaatacagttgcaaggttcaatcagttccgacaatgtgtcatgctccattgtatacaccaaaggatgtgttggagcgccttgcgcttactccatccaaggatttggattctttacttgtggatacagtcaagtttgcatcttcaagaaatagcagtgatcttcgactaagcaagccatcatctcagcgaaatggcttgcctccttttccttggtcacatccgtgctctgggcatcctaaaactgttccggattcagctaaattatctacaaataagatggtttgtcaaggtagatgggtaagagtggaaaacactttgactcctctgaaaggtcctacatggtttccttgaggaactgcaatcactcactgacaatcacaaactagttccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="23672" stop="24859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23972" g_stop="24559" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E586025" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23972" e_stop="24559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAG-AATTTGTAGCCAAAGGAAACACCGACTGTGAATACCAATGCCA-AATAAAACTGGACCCTGT-TTTTGGGTTCACAAGGTAAAACAAGATAACGTCAGACTGTCAGTATCCTTTAATTAAAAATACAAGATAATGTCAGTATC-GCAAAAGCTCACAATCTATATTATTTTTTTCTTTTCTTCTCAAAGGTACAGGAATACAGTTCCAAGGTTCACTCAGTTCCAACAATGTGTCATGCTCCATTGTATACACCAAAGGATGTGTTGGAGCGCCTTGCGCTTGCACCATCCAAGGATTTGGATTCTTTACTTGCGGATACAGTCAAGTTTGCATCTTCAAGAAATAGCAGTGATCTTCGACTAAGCAAGCCATCATCTCAGCGAAATGGCTTGCCTCCTTTTTCTTGGTCACATCCGTGCTCTGGGCATCCTAAAACTGTTCCTGATTCAGCTAAATTATCTACAAATAAGATGGTTTGTCAAGGTAGATGGGTAAGAGTGGAAAACACTTCGACTTCTCTGAAAGGTTCTAC-TGGTTTCCTTGAGGAACTGCAAGCACTCACTGACATTCACAAACTAGTTCCAACA</genome_strand>
        <mrna_strand>GAGAAATTTGTAGCCAAAGAAAACACCAACTATGAATGCCAATGCCAGAATAAAACGGGACACTGTATTTTGGGTTCACAAGGTAAAACAAGATAATGTCAGACTGTCAGTATCCTTTAATTAAAAA-ACAAGATAATGTCAGTTTCTGCAAAAGCTCATAATCTATATTATTTTTTTCTTTTCTTCTCAAAGGTACAGGAATACAGTTGCAAGGTTCAATCAGTTCCGACAATGTGTCATGCTCCATTGTATACACCAAAGGATGTGTTGGAGCGCCTTGCGCTTACTCCATCCAAGGATTTGGATTCTTTACTTGTGGATACAGTCAAGTTTGCATCTTCAAGAAATAGCAGTGATCTTCGACTAAGCAAGCCATCATCTCAGCGAAATGGCTTGCCTCCTTTTCCTTGGTCACATCCGTGCTCTGGGCATCCTAAAACTGTTCCGGATTCAGCTAAATTATCTACAAATAAGATGGTTTGTCAAGGTAGATGGGTAAGAGTGGAAAACACTTTGACTCCTCTGAAAGGTCCTACATGGTTTCCTTGAGGAACTGCAATCACTCACTGACAATCACAAACTAGTTCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356200" ref_strand="+" ref_description="SGN-E356200 [cTOS-20-D17]">
      <seq>ggaccggtaccttgttcagctgaatcaataagatcaactcctgtcaaatcttctaaggaatctgacggtttcagtaacagctttgtaaataaaccatgtacgacgtccccatatacaagggtgatggataaggtttatagtagtagcgaccagaagccgaggaaggtagccaatggagcggagccaaggagatgacagaatgttgaagagcgaactgattatgcagtgaatcagacaagaactgttactgttgcatttgtctattccttctaactgctgttcgacatgcaaaatatggtagaatctgtatagcctgtcacatggaagaaatgaatgttgtaatcttatgctgggctgggtgacttgggatcattgtgcttgtaccattacatgttacatggatgccagacacatcgatacgctttcagcattgcctcagtgtacatcattgatgaggcaatatggtagaaaagttctctatgtagtctctggtattccggaggtattcgttacgtgtgtgtaaatgtattcattatgtgatatctatggtcaggacattttcatactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="25242" stop="26411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25542" g_stop="26119" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E356200" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25542" e_stop="26119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAATTCTGTTG</genome_strand>
        <mrna_strand>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587036" ref_strand="+" ref_description="SGN-E587036 [78148]">
      <seq>ccggtaccttgttcagctgaatcaataagatcaactcctgtcaaatcttttagggaatctgaaggtttcagtaacagctttgtaaataaaccatgtacgacgttcccatatacaagggtgacggataaggcttatagtagtagcgacctgaagccgaggaaggtagccaatggagtggagccaaggagatgacagaatgttggagtgaactcattatgcagtgaatcagacaagaacttttactgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="+" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="25245" stop="26091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25545" g_stop="25790" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="246" polyA_stop="255"/>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="+" ref_id="SGN-E587036" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25545" e_stop="25790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACT</genome_strand>
        <mrna_strand>CCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTTTAGGGAATCTGAAGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTTCCCATATACAAGGGTGACGGATAAGGCTTATAGTAGTAGCGACCTGAAGCCGAGGAAGGTAGCCAATGGAGTGGAGCCAAGGAGATGACAGAATGTTG--GAGTGAACTCATTATGCAGTGAATCAGACAAGAACTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351134" ref_strand="+" ref_description="SGN-E351134 [cTOS-6-L20]">
      <seq>gacagttccatcaaatacgaagagaagactattagaaatgtgtcggaaacaattactatcctacgtgattacagtcgttgcagtttgtttctggttggtcgaaggcctaatggcgttgtacctcttgcattgagccagaggactgattgtcctgaactcgggccagtcgggagtttgttgacttcacaggaatacgccacaacagcatcagttctggtggtgcaacagtattatgataagttatatgcaactaatccacatcagagggatgtagcttcagttccagagaactaattaggggctctttcattgatctttgaatcataatgactgtttttcattcttgacagtttgatataaactatnctttttgagctgtaatcatcacttttttaaatacaggattctggttgctttttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="28982" stop="27964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28682" g_stop="28259" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E351134" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28682" e_stop="28259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATAT-AACTAT-CTTTTTGAGCTGTAATCATCAC-TTTTTAAATACAAGGATTCTGGTTGCTTTTTTTGTGGA</genome_strand>
        <mrna_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAAACTATNCTTTTTGAGCTGTAATCATCACTTTTTTAAATAC-AGGATTCTGGTTGCTTTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353585" ref_strand="+" ref_description="SGN-E353585 [cTOS-15-D16]">
      <seq>gacagttccatcaaatacgaagagaagactattagaaatgtgtcggaaacaattactatcctacgtgattacagtcgttgcagtttgtttctggttggtcgaaggcctaatggcgttgtacctcttgcattgagccagaggactgattgtcctgaactcgggccagtcgggagtttgttgacttcacaggaatacgccacaacagcatcagttctggtggtgcaacagtattatgataagttatatgcaactaatccacatcagagggatgtagcttcagttccagagaactaattaggggctctttcattgatctttgaatcataatgactgtttttcattcttgacagtttgatataactatctttttgagctgtaatcatcactttttaaatacaaggattctggttgcttttttaaaaaaannnannaannaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="28982" stop="27965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28682" g_stop="28264" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="448"/>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E353585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28682" e_stop="28264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTT</genome_strand>
        <mrna_strand>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483287" ref_strand="+" ref_description="SGN-E483287 [cSTE-8-D4]">
      <seq>ttaatattggtaaagatcgaaaggtattgaatgatcagacttttgctatcatggttatgatggctctcttcacgacctttatcaccacacctctggttctggctgtttacaaaccagcaaaaatgctaagcaaaggcgactataaacataggagaatagaaaggaaaaatccgaatactgaactgcgaatactaacctgcttccgtagttctagaaatattccatcggtcattaatctccttgaggcctcacgtggaaccgagaggggagaaaggctttctgtatacgcaatgcatctcatggagttctcggagagaccatcagctatcttaatggtacacaaggctagacataatggcttgcccttctggaataaaggtcagcggtcagctaaccacgttgttgtggcgttcgaggctttccaacaattaagtcaggtctctgtgcggccaatgacatcaatctcatcactctctgacatgcatgaagatatttgcattactgctgagaagaaaaatatagcaatgataattttaccatatcacaagaatctgaggcttgacggctcatttgaatcaactcgacctgattttcacttggttaacaggagggttcttgaacatgcttcatgttcagtggggatatttgttgatcgcggacttggtggtactgcacagatatctgcaagtaatggttccttctctattatcgntctatactttgggggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="29976" stop="28568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29676" g_stop="29654" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29653" i_stop="29577" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29576" g_stop="28868" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="732" r_length="709" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E483287" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29676" e_stop="29654"/>
          <exon e_start="29576" e_stop="28868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATATTGGTAAAGATCGAAAGGTAATGCTCGTCTAGCAACTTATTTGTTTTGTGAAATCATGTAATCTTGTTTCAGCTTTACGCGATGTCTCATGCAGGTATTGAATGATCAGACTTTTGCTATCATGGTTATGATGGCTCTCTTCACGACCTTTATCACCACACCCCTGGTTATGGCTGTTTACAAACCAGCGAAAATGCCAAGCAAAGGCGACTATAAACATAGGAGAATAGAAAGGAAAAATCCGAATACTGAACTGCGATTACTAACCTGCTTCCGTAGTTCTAGAAATATTCCATCAGCCATTAATCTCCTTGAGGCCTCACGTGGTACCGAGAGGGGAGAAAGGCTTTCTGTATATGCAATGCATCTCATGGAGTTCTCGGAGAGACCATCAGCTATCTTAATGGTACACAAGGCTAGACATAATGGCTTGCCCTTCTGGAATAAAAGTCAGCGGTCAGCTAACCACGTTGTTGTGGCGTTTGAGGCTTTCCAACAATTAAGTCAGGTGTCTGTGCGGCCAATGACATCAATCTCATCACTCTCTGACATGCATGAAGATATTTGCATTACTGCTGAGAAGAAAAATATAGCAATGATAATTTTACCATATCACAAGAATCTGAGGCTCGACGGCTCATTTGAGTCAACTCGACCTGATTTTCACTTGGTTAACAAAAGGGTTCTTGAACATGCTTCATGTTCAGTGGGGATCTTTGTTGATCGCGGACTTGGTGGTACTGCACAGATATCTGCAAGTAACGTTTCCTTCTCTATTACCGTTCTTTACTTTGGAGGCCATG</genome_strand>
        <mrna_strand>TTAATATTGGTAAAGATCGAAAG.............................................................................GTATTGAATGATCAGACTTTTGCTATCATGGTTATGATGGCTCTCTTCACGACCTTTATCACCACACCTCTGGTTCTGGCTGTTTACAAACCAGCAAAAATGCTAAGCAAAGGCGACTATAAACATAGGAGAATAGAAAGGAAAAATCCGAATACTGAACTGCGAATACTAACCTGCTTCCGTAGTTCTAGAAATATTCCATCGGTCATTAATCTCCTTGAGGCCTCACGTGGAACCGAGAGGGGAGAAAGGCTTTCTGTATACGCAATGCATCTCATGGAGTTCTCGGAGAGACCATCAGCTATCTTAATGGTACACAAGGCTAGACATAATGGCTTGCCCTTCTGGAATAAAGGTCAGCGGTCAGCTAACCACGTTGTTGTGGCGTTCGAGGCTTTCCAACAATTAAGTCAGGTCTCTGTGCGGCCAATGACATCAATCTCATCACTCTCTGACATGCATGAAGATATTTGCATTACTGCTGAGAAGAAAAATATAGCAATGATAATTTTACCATATCACAAGAATCTGAGGCTTGACGGCTCATTTGAATCAACTCGACCTGATTTTCACTTGGTTAACAGGAGGGTTCTTGAACATGCTTCATGTTCAGTGGGGATATTTGTTGATCGCGGACTTGGTGGTACTGCACAGATATCTGCAAGTAATGGTTCCTTCTCTATTATCGNTCTATACTTTGGGGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426643" ref_strand="+" ref_description="SGN-E426643 [STM-46-N12]">
      <seq>ttaatattggtaaagatcgaaaggtattgaatgatcagacttttgctatcatggttatgatggctctcttcacgacctttatcaccacacctctggttctggctgtttacaaaccagcaaaaatgctaagcaaaggcgactataaacataggagaatagaaaggaaaaatccgaatactgaactgcgaatactaacctgcttccgtagttctagaaatattccatcggtcattaatctccttgaggcctcacgtggaaccgagaggggagaaaggctttctgtatacgcaatgcatctcatggagttctcggagagaccatcagctatcttaatggtacacaaggctagacataatggcttgcccttctggaataaaggtcagcggtcagctaaccacgttgttgtggcgttcgaggctttccaacaattaagtcaggtctctgtgcggccaatgacatcaatctcatcactctctgacatgcatgaagatatttgcattactgctgagaagaaaatatagcaatgataattttaccatatcancagaatctgaggcttgacggctcatttgaatcaactcgaactgattttcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="29976" stop="28701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29676" g_stop="29654" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29653" i_stop="29577" i_length="77">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29576" g_stop="29001" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="598" r_length="575" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E426643" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29676" e_stop="29654"/>
          <exon e_start="29576" e_stop="29001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATATTGGTAAAGATCGAAAGGTAATGCTCGTCTAGCAACTTATTTGTTTTGTGAAATCATGTAATCTTGTTTCAGCTTTACGCGATGTCTCATGCAGGTATTGAATGATCAGACTTTTGCTATCATGGTTATGATGGCTCTCTTCACGACCTTTATCACCACACCCCTGGTTATGGCTGTTTACAAACCAGCGAAAATGCCAAGCAAAGGCGACTATAAACATAGGAGAATAGAAAGGAAAAATCCGAATACTGAACTGCGATTACTAACCTGCTTCCGTAGTTCTAGAAATATTCCATCAGCCATTAATCTCCTTGAGGCCTCACGTGGTACCGAGAGGGGAGAAAGGCTTTCTGTATATGCAATGCATCTCATGGAGTTCTCGGAGAGACCATCAGCTATCTTAATGGTACACAAGGCTAGACATAATGGCTTGCCCTTCTGGAATAAAAGTCAGCGGTCAGCTAACCACGTTGTTGTGGCGTTTGAGGCTTTCCAACAATTAAGTCAGGTGTCTGTGCGGCCAATGACATCAATCTCATCACTCTCTGACATGCATGAAGATATTTGCATTACTGCTGAGAAGAAAAATATAGCAATGATAATTTTACCATATCACAAGAATCTGAGGCTCGACGGCTCATTTGAGTCAACTCGACCTGATTTTCACTTG</genome_strand>
        <mrna_strand>TTAATATTGGTAAAGATCGAAAG.............................................................................GTATTGAATGATCAGACTTTTGCTATCATGGTTATGATGGCTCTCTTCACGACCTTTATCACCACACCTCTGGTTCTGGCTGTTTACAAACCAGCAAAAATGCTAAGCAAAGGCGACTATAAACATAGGAGAATAGAAAGGAAAAATCCGAATACTGAACTGCGAATACTAACCTGCTTCCGTAGTTCTAGAAATATTCCATCGGTCATTAATCTCCTTGAGGCCTCACGTGGAACCGAGAGGGGAGAAAGGCTTTCTGTATACGCAATGCATCTCATGGAGTTCTCGGAGAGACCATCAGCTATCTTAATGGTACACAAGGCTAGACATAATGGCTTGCCCTTCTGGAATAAAGGTCAGCGGTCAGCTAACCACGTTGTTGTGGCGTTCGAGGCTTTCCAACAATTAAGTCAGGTCTCTGTGCGGCCAATGACATCAATCTCATCACTCTCTGACATGCATGAAGATATTTGCATTACTGCTGAGAAG-AAAATATAGCAATGATAATTTTACCATATCANCAGAATCTGAGGCTTGACGGCTCATTTGAATCAACTCGAACTGATTTTCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329794" ref_strand="+" ref_description="SGN-E329794 [cTOD-3-K22]">
      <seq>aatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattattgaattttaggaaagaaatattgcctttcattccaaagacagaggaatgtcccaaggaggaagacattaatgatgactgttctgatattcttgttgttagtaattccatggctatggcagttcataatgaggatgcaaatgttgctcttgtcggacacacttatttggttaaggtgacattatctaatggaacaacattcactgcttatacatatgctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="41217" stop="39127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40917" g_stop="40662" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40661" i_stop="39989" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39988" g_stop="39819" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="426" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39818" i_stop="39489" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39488" g_stop="39427" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="488" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E329794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40917" e_stop="40662"/>
          <exon e_start="39988" e_stop="39819"/>
          <exon e_start="39488" e_stop="39427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAATAGATTTAGGGGCCTAAAGTTTGTCTAAACAAAGATTTTGAGCTTATGGGCTCTGTATTCTAAAAAGTAATGTTGTTTGATTTGACATAAAAATTAAGAAACAGAAGTGTTGTCTAAAACAAGTCACAAGTGTTTGTGTGAATATAAATCATCACTTTAAAGTTAAATTGTTATCAAATAGCAAAACATGTCATTTTTTTCGACTAATTTGAAAGAAATGTGTGTCATATAATTTAGGACAGAAAGAATACTAAGTTTGATTTTTGAGCCAAAGCTAATATGTTATGTTGAACCTGAACAAATGTTGTAGCTCCACTCTAGACTATATATATGAAGTTGTATTATGGCAAATGTTGAGTCCCCTTGACTTTCTTTTGTGCTTTTGCGTATTGAAAATTTTGATTTTGCTACTTATAAGATTCGTTACATTAAACGAGAAGCACCTTGTACGAGTTTTTTGTACTTCTAAAACTTTTAATTAAGGGAGGAGGGATATTATCGACCCCACGAAAGGACTTTATTGTCCATACTTCTTCTATTAAGTAGATAAATTAACAAACTGACATTGTTTTCTTTTGGTTCTTCAGATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACACGTAAATTATCTTCTTCTTTTTTTTCCGACATAATAACTAAACAGTCATTCAAACTTGGCTTCAGCTAGCAAGTATACACATTCTAGACACCTCAACTCGTCTTCACTGTGTTAGTTGAACCTCCAACTTCTATACATCTTCATGTGTCACTTTAGCATCGCGCATCCACGAGACATAGTGGGAATGGTTTGGTTGTCAGTTGAAACCAAGTTGAGTAGTGCATTTCAAAGTTGAAGTGCTTACTTGCCAGCTGAAGCCAAGTTTGAGCGCTTGTTTTATATCTGGTGCTTTTGGAAAATATGACCCTTTTCTGTTTACATTATACTGCAGTTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</genome_strand>
        <mrna_strand>AATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACAC..........................................................................................................................................................................................................................................................................................................................................TTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279285" ref_strand="-" ref_description="SGN-E279285 [cLEL-4-O18](-)">
      <seq>gcacgagggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattattgaattttaggaaagaaatattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="41258" stop="39654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40963" g_stop="40662" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40661" i_stop="39989" i_length="673">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39988" g_stop="39954" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="337" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E279285" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279285" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40963" e_stop="40662"/>
          <exon e_start="39988" e_stop="39954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAATAGATTTAGGGGCCTAAAGTTTGTCTAAACAAAGATTTTGAGCTTATGGGCTCTGTATTCTAAAAAGTAATGTTGTTTGATTTGACATAAAAATTAAGAAACAGAAGTGTTGTCTAAAACAAGTCACAAGTGTTTGTGTGAATATAAATCATCACTTTAAAGTTAAATTGTTATCAAATAGCAAAACATGTCATTTTTTTCGACTAATTTGAAAGAAATGTGTGTCATATAATTTAGGACAGAAAGAATACTAAGTTTGATTTTTGAGCCAAAGCTAATATGTTATGTTGAACCTGAACAAATGTTGTAGCTCCACTCTAGACTATATATATGAAGTTGTATTATGGCAAATGTTGAGTCCCCTTGACTTTCTTTTGTGCTTTTGCGTATTGAAAATTTTGATTTTGCTACTTATAAGATTCGTTACATTAAACGAGAAGCACCTTGTACGAGTTTTTTGTACTTCTAAAACTTTTAATTAAGGGAGGAGGGATATTATCGACCCCACGAAAGGACTTTATTGTCCATACTTCTTCTATTAAGTAGATAAATTAACAAACTGACATTGTTTTCTTTTGGTTCTTCAGATTTTATTATTGAATTTTAGGAAAGAAATATTGCC</genome_strand>
        <mrna_strand>GCACGAGGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATTATTGAATTTTAGGAAAGAAATATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289769" ref_strand="+" ref_description="SGN-E289769 [cLET-4-N4]">
      <seq>aataatggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactcccaaattctcaaacacttatacatactttatctcaaacaaacaagaacaagttcccaaattattggaatgaactcaaaggaattgctcaaggaagtggtgtcccctttctcaatattttattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="41262" stop="40360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40962" g_stop="40662" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40661" i_stop="40586" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40585" g_stop="40575" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="312" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E289769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40962" e_stop="40662"/>
          <exon e_start="40585" e_stop="40575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAATGTGAACTTCCTAACTTACCCTTCTTCCTTTTTTTTCGTATTTTATATTCTGACTAATTTAAATTTGTATCGTGTAGGATTTATTAAT</genome_strand>
        <mrna_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT............................................................................ATTTTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339142" ref_strand="+" ref_description="SGN-E339142 [cTOF-6-B15]">
      <seq>aataatggccatgggaagcacaaatttggaacccaacaagttagaaatgtatgaatttggcccttttgaagaagatgagggtttccaaattgggtttttgataggccaaaaattctccaaattaatacaaaacaggttatctactgaccttattcttcaaaatcaattactcccttttgctcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0110O22-CAyFw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0110O22.1" temp_strand="-" temp_description="C12HBa0110O22.1  AC235578.2 htgs_phase:2 submitted_to_sgn_as:gi|238909031|gb|AC235578.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-110O22, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="41262" stop="40476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40962" g_stop="40776" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0110O22.1" gen_strand="-" ref_id="SGN-E339142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0110O22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40962" e_stop="40776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTC</genome_strand>
        <mrna_strand>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9780" PGL_stop="9205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9780" e_stop="9205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="9780" e_stop="9205" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9780" stop="9217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9780" stop="9217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9779" stop="9205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9779" stop="9218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9779" stop="9291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTCTCATTCTCTCTCTTTTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACTCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAGGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACAATTTCCACCAAAGAGTCTGTGATGGTTCGTCACGCCCGTGATGGTTCGTCACGCCCGTGACGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTCAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCTGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAATGACTAAACGGGTCGTTACAAAC</gDNA_template>
            <first_frame> I  D  S  H  S  L  S  F  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  S  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  R  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  Q  F  P  P  K  S  L  *  W  F  V  T  P  V  M  V  R  H  A  R  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  S  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  L  C  L  F  F  Q  K  *  N  L  L  L  K  M  T  K  R  V  V  T  N </first_frame>
            <second_frame>  S  I  L  I  L  S  L  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  G  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  N  F  H  Q  R  V  C  D  G  S  S  R  P  *  W  F  V  T  P  V  T  V  R  P  A  I  P  L  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  Q  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  *  L  N  G  S  L  Q   </second_frame>
            <third_frame>   R  F  S  F  S  L  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  K  M  A  I  I  T  H  *  F  T  Q  G  Y  L  F  *  L  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  I  S  T  K  E  S  V  M  V  R  H  A  R  D  G  S  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  F  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  L  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0110O22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9840" PGL_stop="11073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9840" e_stop="10155"/>
            <exon e_start="10560" e_stop="11073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="9840" e_stop="10155" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10156" i_stop="10559" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="10560" e_stop="11073" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9840" stop="10155"/>
              <exon start="10560" stop="10648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10598" stop="10835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10599" stop="11073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGG : GTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTATTTAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGAATCAACAGTAACTCTAGCTATTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTATGTTATGTT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S   : G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  I  *  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  D  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  N  Q  Q  *  L  *  L  F  F  I  T  P  D  I  R  V  S  *  C  F  Y  V  M   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  :  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  F  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  I  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  I  N  S  N  S  S  Y  S  S  L  L  R  I  S  G  *  A  N  A  S  M  L  C  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G :   C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  Y  L  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  *  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  E  S  T  V  T  L  A  I  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  C  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10876" stop="11073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFESTVTLAILHYSGYQGELMLLCYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9840" e_stop="10155"/>
            <exon e_start="10350" e_stop="11073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="9840" e_stop="10155" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10156" i_stop="10349" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="10350" e_stop="11073" e_length="724"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9840" stop="10155"/>
              <exon start="10350" stop="10753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10598" stop="10835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10599" stop="11073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGG : GTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGTGGGACGGGTGTCACGAATCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACGAACCGACACATAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTATTTAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGAATCAACAGTAACTCTAGCTATTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTATGTTATGTT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  T  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S   : G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  S  T  H  R  I  S  G  S  G  V  T  N  R  H  I  E  L  V  G  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I  S  G  T  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  I  *  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  D  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  N  Q  Q  *  L  *  L  F  F  I  T  P  D  I  R  V  S  *  C  F  Y  V  M   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  :  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  R  R  I  S  G  T  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  I  E  L  V  G  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  F  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  I  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  I  N  S  N  S  S  Y  S  S  L  L  R  I  S  G  *  A  N  A  S  M  L  C  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G :   C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  V  E  L  V  G  R  V  S  R  I  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I  S  G  T  G  V  T  N  R  H  I  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  D  G  C  H  E  P  T  H  R  I  S  G  S  G  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  Y  L  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  *  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  E  S  T  V  T  L  A  I  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  C  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10876" stop="11073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFESTVTLAILHYSGYQGELMLLCYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16889" PGL_stop="18854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16889" e_stop="17226"/>
            <exon e_start="18022" e_stop="18321"/>
            <exon e_start="18626" e_stop="18854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16889" e_stop="17226" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.967">
            <gDNA_intron_boundary i_start="17227" i_stop="18021" i_length="795"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18022" e_stop="18321" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.966">
            <gDNA_intron_boundary i_start="18322" i_stop="18625" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="18626" e_stop="18854" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16889" stop="17226"/>
              <exon start="18022" stop="18321"/>
              <exon start="18626" stop="18854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAACACTTTACTTTCATCTATAAATCCATAAATTATCCACTTTTTTCCACTCAAATCGCCTTAAATCAGCTCAATTTAGCTTTTTCACGGCTGAAATCTGATCAATTTGAAGTTTTTTCGATGAAAAATGATGAGTTTGAGAGTTTTTGTGAGGGTTTTGTTCGGTGGAGTACAGTGAGGTGATGGAAGCTTTGAAAGGACCTGTTTTGGTTGATGTGGATGTGTCTAAGCTTATGGGATCGGAAAGTTTTAGTGGCGGTGCTAGGAAATTGGAGAGGCCTTCTGTTGCGATTGCGCCTTCTATTGGAAGGATCAGTGGTTCAGTCAGACGAAAAG : AGCAAGCTTTTTGGAGTAAGATGCCCCAGAATGAATTTGCTGGTCAGCAATCCAGACATCATGTTGAGGATGCTTCAGAAGACCACAGTGTCGGGAAGACGAGTACTGTTCTTCCACTGACGCTTGGGCTAGAGGCTGCACAGTCACATCGGAACTGTGGGAAAGTGGGGAGAAATAGTACTTCTAATTCTAAGAGATCAAGGATAATGCAGATGGATGCTCCTGTAAATAAAACCGGTGAAGACGGAAAAGGCCTTTCTACTGAGATTTCCGCAAATCTTACAAATTGCAAAAATGGAG : GATTCACAGTGGCATGGAACAGGTTGAGCTCATGGTTTTATTGTTTCTGAACATCACTACAGTCCTATGATACCCTGTGTTAGTTATGCTTGAAAACTTCAAAGAAAGCAACACATTAGTTTGAGAAAATTAAGAATTCCAAAAGTTTCCCTTTCAAAAAGTGCACTTCTTTCTGATTAAGTTGGAATTAGTTTGAGAAGAAGGCTATTGGACACTTCCCCCATGCCAT</gDNA_template>
            <first_frame> R  N  T  L  L  S  S  I  N  P  *  I  I  H  F  F  P  L  K  S  P  *  I  S  S  I  *  L  F  H  G  *  N  L  I  N  L  K  F  F  R  *  K  M  M  S  L  R  V  F  V  R  V  L  F  G  G  V  Q  *  G  D  G  S  F  E  R  T  C  F  G  *  C  G  C  V  *  A  Y  G  I  G  K  F  *  W  R  C  *  E  I  G  E  A  F  C  C  D  C  A  F  Y  W  K  D  Q  W  F  S  Q  T  K  R :   A  S  F  L  E  *  D  A  P  E  *  I  C  W  S  A  I  Q  T  S  C  *  G  C  F  R  R  P  Q  C  R  E  D  E  Y  C  S  S  T  D  A  W  A  R  G  C  T  V  T  S  E  L  W  E  S  G  E  K  *  Y  F  *  F  *  E  I  K  D  N  A  D  G  C  S  C  K  *  N  R  *  R  R  K  R  P  F  Y  *  D  F  R  K  S  Y  K  L  Q  K  W  R :   I  H  S  G  M  E  Q  V  E  L  M  V  L  L  F  L  N  I  T  T  V  L  *  Y  P  V  L  V  M  L  E  N  F  K  E  S  N  T  L  V  *  E  N  *  E  F  Q  K  F  P  F  Q  K  V  H  F  F  L  I  K  L  E  L  V  *  E  E  G  Y  W  T  L  P  P  C  H </first_frame>
            <second_frame>  A  T  L  Y  F  H  L  *  I  H  K  L  S  T  F  F  H  S  N  R  L  K  S  A  Q  F  S  F  F  T  A  E  I  *  S  I  *  S  F  F  D  E  K  *  *  V  *  E  F  L  *  G  F  C  S  V  E  Y  S  E  V  M  E  A  L  K  G  P  V  L  V  D  V  D  V  S  K  L  M  G  S  E  S  F  S  G  G  A  R  K  L  E  R  P  S  V  A  I  A  P  S  I  G  R  I  S  G  S  V  R  R  K   : E  Q  A  F  W  S  K  M  P  Q  N  E  F  A  G  Q  Q  S  R  H  H  V  E  D  A  S  E  D  H  S  V  G  K  T  S  T  V  L  P  L  T  L  G  L  E  A  A  Q  S  H  R  N  C  G  K  V  G  R  N  S  T  S  N  S  K  R  S  R  I  M  Q  M  D  A  P  V  N  K  T  G  E  D  G  K  G  L  S  T  E  I  S  A  N  L  T  N  C  K  N  G   : G  F  T  V  A  W  N  R  L  S  S  W  F  Y  C  F  *  T  S  L  Q  S  Y  D  T  L  C  *  L  C  L  K  T  S  K  K  A  T  H  *  F  E  K  I  K  N  S  K  S  F  P  F  K  K  C  T  S  F  *  L  S  W  N  *  F  E  K  K  A  I  G  H  F  P  H  A   </second_frame>
            <third_frame>   Q  H  F  T  F  I  Y  K  S  I  N  Y  P  L  F  S  T  Q  I  A  L  N  Q  L  N  L  A  F  S  R  L  K  S  D  Q  F  E  V  F  S  M  K  N  D  E  F  E  S  F  C  E  G  F  V  R  W  S  T  V  R  *  W  K  L  *  K  D  L  F  W  L  M  W  M  C  L  S  L  W  D  R  K  V  L  V  A  V  L  G  N  W  R  G  L  L  L  R  L  R  L  L  L  E  G  S  V  V  Q  S  D  E  K  :  S  K  L  F  G  V  R  C  P  R  M  N  L  L  V  S  N  P  D  I  M  L  R  M  L  Q  K  T  T  V  S  G  R  R  V  L  F  F  H  *  R  L  G  *  R  L  H  S  H  I  G  T  V  G  K  W  G  E  I  V  L  L  I  L  R  D  Q  G  *  C  R  W  M  L  L  *  I  K  P  V  K  T  E  K  A  F  L  L  R  F  P  Q  I  L  Q  I  A  K  M  E  :  D  S  Q  W  H  G  T  G  *  A  H  G  F  I  V  S  E  H  H  Y  S  P  M  I  P  C  V  S  Y  A  *  K  L  Q  R  K  Q  H  I  S  L  R  K  L  R  I  P  K  V  S  L  S  K  S  A  L  L  S  D  *  V  G  I  S  L  R  R  R  L  L  D  T  S  P  M  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17043" stop="17226"/>
                    <exon start="18022" stop="18321"/>
                    <exon start="18626" stop="18675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCSVEYSEVMEALKGPVLVDVDVSKLMGSESFSGGARKLERPSVAIAPSIGRISGSVRRKEQAFWSKMPQNEFAGQQSRHHVEDASEDHSVGKTSTVLPLTLGLEAAQSHRNCGKVGRNSTSNSKRSRIMQMDAPVNKTGEDGKGLSTEISANLTNCKNGGFTVAWNRLSSWFYCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23972" PGL_stop="24559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23972" e_stop="24559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="23972" e_stop="24559" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23972" stop="24559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATTTGTAGCCAAAGGAAACACCGACTGTGAATACCAATGCCAAATAAAACTGGACCCTGTTTTTGGGTTCACAAGGTAAAACAAGATAACGTCAGACTGTCAGTATCCTTTAATTAAAAATACAAGATAATGTCAGTATCGCAAAAGCTCACAATCTATATTATTTTTTTCTTTTCTTCTCAAAGGTACAGGAATACAGTTCCAAGGTTCACTCAGTTCCAACAATGTGTCATGCTCCATTGTATACACCAAAGGATGTGTTGGAGCGCCTTGCGCTTGCACCATCCAAGGATTTGGATTCTTTACTTGCGGATACAGTCAAGTTTGCATCTTCAAGAAATAGCAGTGATCTTCGACTAAGCAAGCCATCATCTCAGCGAAATGGCTTGCCTCCTTTTTCTTGGTCACATCCGTGCTCTGGGCATCCTAAAACTGTTCCTGATTCAGCTAAATTATCTACAAATAAGATGGTTTGTCAAGGTAGATGGGTAAGAGTGGAAAACACTTCGACTTCTCTGAAAGGTTCTACTGGTTTCCTTGAGGAACTGCAAGCACTCACTGACATTCACAAACTAGTTCCAACA</gDNA_template>
            <first_frame> E  N  L  *  P  K  E  T  P  T  V  N  T  N  A  K  *  N  W  T  L  F  L  G  S  Q  G  K  T  R  *  R  Q  T  V  S  I  L  *  L  K  I  Q  D  N  V  S  I  A  K  A  H  N  L  Y  Y  F  F  L  F  F  S  K  V  Q  E  Y  S  S  K  V  H  S  V  P  T  M  C  H  A  P  L  Y  T  P  K  D  V  L  E  R  L  A  L  A  P  S  K  D  L  D  S  L  L  A  D  T  V  K  F  A  S  S  R  N  S  S  D  L  R  L  S  K  P  S  S  Q  R  N  G  L  P  P  F  S  W  S  H  P  C  S  G  H  P  K  T  V  P  D  S  A  K  L  S  T  N  K  M  V  C  Q  G  R  W  V  R  V  E  N  T  S  T  S  L  K  G  S  T  G  F  L  E  E  L  Q  A  L  T  D  I  H  K  L  V  P  T </first_frame>
            <second_frame>  R  I  C  S  Q  R  K  H  R  L  *  I  P  M  P  N  K  T  G  P  C  F  W  V  H  K  V  K  Q  D  N  V  R  L  S  V  S  F  N  *  K  Y  K  I  M  S  V  S  Q  K  L  T  I  Y  I  I  F  F  F  S  S  Q  R  Y  R  N  T  V  P  R  F  T  Q  F  Q  Q  C  V  M  L  H  C  I  H  Q  R  M  C  W  S  A  L  R  L  H  H  P  R  I  W  I  L  Y  L  R  I  Q  S  S  L  H  L  Q  E  I  A  V  I  F  D  *  A  S  H  H  L  S  E  M  A  C  L  L  F  L  G  H  I  R  A  L  G  I  L  K  L  F  L  I  Q  L  N  Y  L  Q  I  R  W  F  V  K  V  D  G  *  E  W  K  T  L  R  L  L  *  K  V  L  L  V  S  L  R  N  C  K  H  S  L  T  F  T  N  *  F  Q   </second_frame>
            <third_frame>   E  F  V  A  K  G  N  T  D  C  E  Y  Q  C  Q  I  K  L  D  P  V  F  G  F  T  R  *  N  K  I  T  S  D  C  Q  Y  P  L  I  K  N  T  R  *  C  Q  Y  R  K  S  S  Q  S  I  L  F  F  S  F  L  L  K  G  T  G  I  Q  F  Q  G  S  L  S  S  N  N  V  S  C  S  I  V  Y  T  K  G  C  V  G  A  P  C  A  C  T  I  Q  G  F  G  F  F  T  C  G  Y  S  Q  V  C  I  F  K  K  *  Q  *  S  S  T  K  Q  A  I  I  S  A  K  W  L  A  S  F  F  L  V  T  S  V  L  W  A  S  *  N  C  S  *  F  S  *  I  I  Y  K  *  D  G  L  S  R  *  M  G  K  S  G  K  H  F  D  F  S  E  R  F  Y  W  F  P  *  G  T  A  S  T  H  *  H  S  Q  T  S  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24089" stop="24559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKIQDNVSIAKAHNLYYFFLFFSKVQEYSSKVHSVPTMCHAPLYTPKDVLERLALAPSKDLDSLLADTVKFASSRNSSDLRLSKPSSQRNGLPPFSWSHPCSGHPKTVPDSAKLSTNKMVCQGRWVRVENTSTSLKGSTGFLEELQALTDIHKLVPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25542" PGL_stop="26119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25542" e_stop="26119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="25542" e_stop="26119" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25542" stop="26119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25545" stop="25790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACCGGTACCTTGTTCAGCTGAATCAATAAGATCAACTCCTGTCAAATCTTCTAAGGAATCTGACGGTTTCAGTAACAGCTTTGTAAATAAACCATGTACGACGTCCCCATATACAAGGGTGATGGATAAGGTTTATAGTAGTAGCGACCAGAAGCCGAGGAAGGTAGCCAATGGAGCGGAGCCAAGGAGATGACAGAATGTTGAAGAGCGAACTGATTATGCAGTGAATCAGACAAGAACTGTTACTGTTGCATTTGTCTATTCCTTCTAACTGCTGTTCGACATGCAAAATATGGTAGAATCTGTATAGCCTGTCACATGGAAGAAATGAATGTTGTAATCTTATGCTGGGCTGGGTGACTTGGGATCATTGTGCTTGTACCATTACATGTTACATGGATGCCAGACACATCGATACGCTTTCAGCATTGCCTCAGTGTACATCATTGATGAGGCAATATGGTAGAAAAGTTCTCTATGTAGTCTCTGGTATTCCGGAGGTATTCGTTACGTGTGTGTAAATGTATTCATTATGTGATATCTATGGTCAGGACATTTTCATACTCAATTCTGTTG</gDNA_template>
            <first_frame> G  P  V  P  C  S  A  E  S  I  R  S  T  P  V  K  S  S  K  E  S  D  G  F  S  N  S  F  V  N  K  P  C  T  T  S  P  Y  T  R  V  M  D  K  V  Y  S  S  S  D  Q  K  P  R  K  V  A  N  G  A  E  P  R  R  *  Q  N  V  E  E  R  T  D  Y  A  V  N  Q  T  R  T  V  T  V  A  F  V  Y  S  F  *  L  L  F  D  M  Q  N  M  V  E  S  V  *  P  V  T  W  K  K  *  M  L  *  S  Y  A  G  L  G  D  L  G  S  L  C  L  Y  H  Y  M  L  H  G  C  Q  T  H  R  Y  A  F  S  I  A  S  V  Y  I  I  D  E  A  I  W  *  K  S  S  L  C  S  L  W  Y  S  G  G  I  R  Y  V  C  V  N  V  F  I  M  *  Y  L  W  S  G  H  F  H  T  Q  F  C   </first_frame>
            <second_frame>  D  R  Y  L  V  Q  L  N  Q  *  D  Q  L  L  S  N  L  L  R  N  L  T  V  S  V  T  A  L  *  I  N  H  V  R  R  P  H  I  Q  G  *  W  I  R  F  I  V  V  A  T  R  S  R  G  R  *  P  M  E  R  S  Q  G  D  D  R  M  L  K  S  E  L  I  M  Q  *  I  R  Q  E  L  L  L  L  H  L  S  I  P  S  N  C  C  S  T  C  K  I  W  *  N  L  Y  S  L  S  H  G  R  N  E  C  C  N  L  M  L  G  W  V  T  W  D  H  C  A  C  T  I  T  C  Y  M  D  A  R  H  I  D  T  L  S  A  L  P  Q  C  T  S  L  M  R  Q  Y  G  R  K  V  L  Y  V  V  S  G  I  P  E  V  F  V  T  C  V  *  M  Y  S  L  C  D  I  Y  G  Q  D  I  F  I  L  N  S  V  </second_frame>
            <third_frame>   T  G  T  L  F  S  *  I  N  K  I  N  S  C  Q  I  F  *  G  I  *  R  F  Q  *  Q  L  C  K  *  T  M  Y  D  V  P  I  Y  K  G  D  G  *  G  L  *  *  *  R  P  E  A  E  E  G  S  Q  W  S  G  A  K  E  M  T  E  C  *  R  A  N  *  L  C  S  E  S  D  K  N  C  Y  C  C  I  C  L  F  L  L  T  A  V  R  H  A  K  Y  G  R  I  C  I  A  C  H  M  E  E  M  N  V  V  I  L  C  W  A  G  *  L  G  I  I  V  L  V  P  L  H  V  T  W  M  P  D  T  S  I  R  F  Q  H  C  L  S  V  H  H  *  *  G  N  M  V  E  K  F  S  M  *  S  L  V  F  R  R  Y  S  L  R  V  C  K  C  I  H  Y  V  I  S  M  V  R  T  F  S  Y  S  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25843" stop="26064"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLYSLSHGRNECCNLMLGWVTWDHCACTITCYMDARHIDTLSALPQCTSLMRQYGRKVLYVVSGIPEVFVTCV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25542" stop="25736"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPVPCSAESIRSTPVKSSKESDGFSNSFVNKPCTTSPYTRVMDKVYSSSDQKPRKVANGAEPRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28682" PGL_stop="28259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28682" e_stop="28259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="28682" e_stop="28259" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28682" stop="28259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28682" stop="28264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAGTTCCATCAAATACGAAGAGAAGACTATTAGAAATGTGTCGGAAACAATTACTATCCTACGTGATTACAGTCGTTGCAGTTTGTTTCTGGTTGGTCGAAGGCCTAATGGCGTTGTACCTCTTGCATTGAGCCAGAGGACTGATTGTCCTGAACTCGGGCCAGTCGGGAGTTTGTTGACTTCACAGGAATACGCCACAACAGCATCAGTTCTGGTGGTGCAACAGTATTATGATAAGTTATATGCAACTAATCCACATCAGAGGGATGTAGCTTCAGTTCCAGAGAACTAATTAGGGGCTCTTTCATTGATCTTTGAATCATAATGACTGTTTTTCATTCTTGACAGTTTGATATAACTATCTTTTTGAGCTGTAATCATCACTTTTTAAATACAAGGATTCTGGTTGCTTTTTTTGTGGA</gDNA_template>
            <first_frame> D  S  S  I  K  Y  E  E  K  T  I  R  N  V  S  E  T  I  T  I  L  R  D  Y  S  R  C  S  L  F  L  V  G  R  R  P  N  G  V  V  P  L  A  L  S  Q  R  T  D  C  P  E  L  G  P  V  G  S  L  L  T  S  Q  E  Y  A  T  T  A  S  V  L  V  V  Q  Q  Y  Y  D  K  L  Y  A  T  N  P  H  Q  R  D  V  A  S  V  P  E  N  *  L  G  A  L  S  L  I  F  E  S  *  *  L  F  F  I  L  D  S  L  I  *  L  S  F  *  A  V  I  I  T  F  *  I  Q  G  F  W  L  L  F  L  W  </first_frame>
            <second_frame>  T  V  P  S  N  T  K  R  R  L  L  E  M  C  R  K  Q  L  L  S  Y  V  I  T  V  V  A  V  C  F  W  L  V  E  G  L  M  A  L  Y  L  L  H  *  A  R  G  L  I  V  L  N  S  G  Q  S  G  V  C  *  L  H  R  N  T  P  Q  Q  H  Q  F  W  W  C  N  S  I  M  I  S  Y  M  Q  L  I  H  I  R  G  M  *  L  Q  F  Q  R  T  N  *  G  L  F  H  *  S  L  N  H  N  D  C  F  S  F  L  T  V  *  Y  N  Y  L  F  E  L  *  S  S  L  F  K  Y  K  D  S  G  C  F  F  C  G </second_frame>
            <third_frame>   Q  F  H  Q  I  R  R  E  D  Y  *  K  C  V  G  N  N  Y  Y  P  T  *  L  Q  S  L  Q  F  V  S  G  W  S  K  A  *  W  R  C  T  S  C  I  E  P  E  D  *  L  S  *  T  R  A  S  R  E  F  V  D  F  T  G  I  R  H  N  S  I  S  S  G  G  A  T  V  L  *  *  V  I  C  N  *  S  T  S  E  G  C  S  F  S  S  R  E  L  I  R  G  S  F  I  D  L  *  I  I  M  T  V  F  H  S  *  Q  F  D  I  T  I  F  L  S  C  N  H  H  F  L  N  T  R  I  L  V  A  F  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28682" stop="28389"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSSIKYEEKTIRNVSETITILRDYSRCSLFLVGRRPNGVVPLALSQRTDCPELGPVGSLLTSQEYATTASVLVVQQYYDKLYATNPHQRDVASVPEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29676" PGL_stop="28868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29676" e_stop="29654"/>
            <exon e_start="29576" e_stop="28868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29676" e_stop="29654" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29653" i_stop="29577" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="29576" e_stop="28868" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29676" stop="29654"/>
              <exon start="29576" stop="28868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29676" stop="29654"/>
              <exon start="29576" stop="29001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATATTGGTAAAGATCGAAAG : GTATTGAATGATCAGACTTTTGCTATCATGGTTATGATGGCTCTCTTCACGACCTTTATCACCACACCCCTGGTTATGGCTGTTTACAAACCAGCGAAAATGCCAAGCAAAGGCGACTATAAACATAGGAGAATAGAAAGGAAAAATCCGAATACTGAACTGCGATTACTAACCTGCTTCCGTAGTTCTAGAAATATTCCATCAGCCATTAATCTCCTTGAGGCCTCACGTGGTACCGAGAGGGGAGAAAGGCTTTCTGTATATGCAATGCATCTCATGGAGTTCTCGGAGAGACCATCAGCTATCTTAATGGTACACAAGGCTAGACATAATGGCTTGCCCTTCTGGAATAAAAGTCAGCGGTCAGCTAACCACGTTGTTGTGGCGTTTGAGGCTTTCCAACAATTAAGTCAGGTGTCTGTGCGGCCAATGACATCAATCTCATCACTCTCTGACATGCATGAAGATATTTGCATTACTGCTGAGAAGAAAAATATAGCAATGATAATTTTACCATATCACAAGAATCTGAGGCTCGACGGCTCATTTGAGTCAACTCGACCTGATTTTCACTTGGTTAACAAAAGGGTTCTTGAACATGCTTCATGTTCAGTGGGGATCTTTGTTGATCGCGGACTTGGTGGTACTGCACAGATATCTGCAAGTAACGTTTCCTTCTCTATTACCGTTCTTTACTTTGGAGGCCATG</gDNA_template>
            <first_frame> L  I  L  V  K  I  E  R :   Y  *  M  I  R  L  L  L  S  W  L  *  W  L  S  S  R  P  L  S  P  H  P  W  L  W  L  F  T  N  Q  R  K  C  Q  A  K  A  T  I  N  I  G  E  *  K  G  K  I  R  I  L  N  C  D  Y  *  P  A  S  V  V  L  E  I  F  H  Q  P  L  I  S  L  R  P  H  V  V  P  R  G  E  K  G  F  L  Y  M  Q  C  I  S  W  S  S  R  R  D  H  Q  L  S  *  W  Y  T  R  L  D  I  M  A  C  P  S  G  I  K  V  S  G  Q  L  T  T  L  L  W  R  L  R  L  S  N  N  *  V  R  C  L  C  G  Q  *  H  Q  S  H  H  S  L  T  C  M  K  I  F  A  L  L  L  R  R  K  I  *  Q  *  *  F  Y  H  I  T  R  I  *  G  S  T  A  H  L  S  Q  L  D  L  I  F  T  W  L  T  K  G  F  L  N  M  L  H  V  Q  W  G  S  L  L  I  A  D  L  V  V  L  H  R  Y  L  Q  V  T  F  P  S  L  L  P  F  F  T  L  E  A  M </first_frame>
            <second_frame>  *  Y  W  *  R  S  K   : G  I  E  *  S  D  F  C  Y  H  G  Y  D  G  S  L  H  D  L  Y  H  H  T  P  G  Y  G  C  L  Q  T  S  E  N  A  K  Q  R  R  L  *  T  *  E  N  R  K  E  K  S  E  Y  *  T  A  I  T  N  L  L  P  *  F  *  K  Y  S  I  S  H  *  S  P  *  G  L  T  W  Y  R  E  G  R  K  A  F  C  I  C  N  A  S  H  G  V  L  G  E  T  I  S  Y  L  N  G  T  Q  G  *  T  *  W  L  A  L  L  E  *  K  S  A  V  S  *  P  R  C  C  G  V  *  G  F  P  T  I  K  S  G  V  C  A  A  N  D  I  N  L  I  T  L  *  H  A  *  R  Y  L  H  Y  C  *  E  E  K  Y  S  N  D  N  F  T  I  S  Q  E  S  E  A  R  R  L  I  *  V  N  S  T  *  F  S  L  G  *  Q  K  G  S  *  T  C  F  M  F  S  G  D  L  C  *  S  R  T  W  W  Y  C  T  D  I  C  K  *  R  F  L  L  Y  Y  R  S  L  L  W  R  P   </second_frame>
            <third_frame>   N  I  G  K  D  R  K  :  V  L  N  D  Q  T  F  A  I  M  V  M  M  A  L  F  T  T  F  I  T  T  P  L  V  M  A  V  Y  K  P  A  K  M  P  S  K  G  D  Y  K  H  R  R  I  E  R  K  N  P  N  T  E  L  R  L  L  T  C  F  R  S  S  R  N  I  P  S  A  I  N  L  L  E  A  S  R  G  T  E  R  G  E  R  L  S  V  Y  A  M  H  L  M  E  F  S  E  R  P  S  A  I  L  M  V  H  K  A  R  H  N  G  L  P  F  W  N  K  S  Q  R  S  A  N  H  V  V  V  A  F  E  A  F  Q  Q  L  S  Q  V  S  V  R  P  M  T  S  I  S  S  L  S  D  M  H  E  D  I  C  I  T  A  E  K  K  N  I  A  M  I  I  L  P  Y  H  K  N  L  R  L  D  G  S  F  E  S  T  R  P  D  F  H  L  V  N  K  R  V  L  E  H  A  S  C  S  V  G  I  F  V  D  R  G  L  G  G  T  A  Q  I  S  A  S  N  V  S  F  S  I  T  V  L  Y  F  G  G  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29674" stop="29654"/>
                    <exon start="29576" stop="28869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIGKDRKVLNDQTFAIMVMMALFTTFITTPLVMAVYKPAKMPSKGDYKHRRIERKNPNTELRLLTCFRSSRNIPSAINLLEASRGTERGERLSVYAMHLMEFSERPSAILMVHKARHNGLPFWNKSQRSANHVVVAFEAFQQLSQVSVRPMTSISSLSDMHEDICITAEKKNIAMIILPYHKNLRLDGSFESTRPDFHLVNKRVLEHASCSVGIFVDRGLGGTAQISASNVSFSITVLYFGGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="40963" PGL_stop="39427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40963" e_stop="40662"/>
            <exon e_start="39988" e_stop="39819"/>
            <exon e_start="39488" e_stop="39427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="40963" e_stop="40662" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="40661" i_stop="39989" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39988" e_stop="39819" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="39818" i_stop="39489" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39488" e_stop="39427" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40963" stop="40662"/>
              <exon start="39988" stop="39954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279285" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40962" stop="40776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40917" stop="40662"/>
              <exon start="39988" stop="39819"/>
              <exon start="39488" stop="39427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT : ATTTTATTATTGAATTTTAGGAAAGAAATATTGCCTTTCATTCCAAAGACAGAGGAATGTCCCAAGGAGGAAGACATTAATGATGACTGTTCTGATATTCTTGTTGTTAGTAATTCCATGGCTATGGCAGTTCATAATGAGGATGCAAATGTTGCTCTTGTCGGACACAC : TTATTTGGTTAAGGTGACATTATCTAATGGAACAACATTCACTGCTTATACATATGCTGGAG</gDNA_template>
            <first_frame> Q  *  W  P  W  E  A  Q  I  W  N  P  T  S  *  K  C  M  N  L  A  L  L  K  K  M  R  V  S  K  L  G  F  *  *  A  K  N  S  P  N  *  Y  K  T  G  Y  L  L  T  L  F  F  K  I  N  Y  S  L  L  L  N  S  Q  I  L  K  H  L  Y  I  L  Y  L  K  Q  T  R  T  S  S  Q  I  I  G  M  N  S  K  E  L  L  K  E  V  V  S  P  F  S  I :   F  Y  Y  *  I  L  G  K  K  Y  C  L  S  F  Q  R  Q  R  N  V  P  R  R  K  T  L  M  M  T  V  L  I  F  L  L  L  V  I  P  W  L  W  Q  F  I  M  R  M  Q  M  L  L  L  S  D  T   : L  I  W  L  R  *  H  Y  L  M  E  Q  H  S  L  L  I  H  M  L  E </first_frame>
            <second_frame>  N  N  G  H  G  K  H  K  F  G  T  Q  Q  V  R  N  V  *  I  W  P  F  *  R  R  *  G  F  P  N  W  V  F  D  R  P  K  I  L  Q  I  N  T  K  Q  V  I  Y  *  P  Y  S  S  K  S  I  T  P  F  C  S  T  P  K  F  S  N  T  Y  T  Y  F  I  S  N  K  Q  E  Q  V  P  K  L  L  E  *  T  Q  R  N  C  S  R  K  W  C  P  L  S  Q   : Y  F  I  I  E  F  *  E  R  N  I  A  F  H  S  K  D  R  G  M  S  Q  G  G  R  H  *  *  *  L  F  *  Y  S  C  C  *  *  F  H  G  Y  G  S  S  *  *  G  C  K  C  C  S  C  R  T  H  :  L  F  G  *  G  D  I  I  *  W  N  N  I  H  C  L  Y  I  C  W   </second_frame>
            <third_frame>   I  M  A  M  G  S  T  N  L  E  P  N  K  L  E  M  Y  E  F  G  P  F  E  E  D  E  G  F  Q  I  G  F  L  I  G  Q  K  F  S  K  L  I  Q  N  R  L  S  T  D  L  I  L  Q  N  Q  L  L  P  F  A  Q  L  P  N  S  Q  T  L  I  H  T  L  S  Q  T  N  K  N  K  F  P  N  Y  W  N  E  L  K  G  I  A  Q  G  S  G  V  P  F  L  N  :  I  L  L  L  N  F  R  K  E  I  L  P  F  I  P  K  T  E  E  C  P  K  E  E  D  I  N  D  D  C  S  D  I  L  V  V  S  N  S  M  A  M  A  V  H  N  E  D  A  N  V  A  L  V  G  H  T :   Y  L  V  K  V  T  L  S  N  G  T  T  F  T  A  Y  T  Y  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40961" stop="40662"/>
                    <exon start="39988" stop="39819"/>
                    <exon start="39488" stop="39428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMGSTNLEPNKLEMYEFGPFEEDEGFQIGFLIGQKFSKLIQNRLSTDLILQNQLLPFAQLPNSQTLIHTLSQTNKNKFPNYWNELKGIAQGSGVPFLNILLLNFRKEILPFIPKTEECPKEEDINDDCSDILVVSNSMAMAVHNEDANVALVGHTYLVKVTLSNGTTFTAYTYAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40962" e_stop="40662"/>
            <exon e_start="40585" e_stop="40575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40962" e_stop="40662" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="40661" i_stop="40586" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="40585" e_stop="40575" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40962" stop="40662"/>
              <exon start="40585" stop="40575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40962" stop="40776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATGGCCATGGGAAGCACAAATTTGGAACCCAACAAGTTAGAAATGTATGAATTTGGCCCTTTTGAAGAAGATGAGGGTTTCCAAATTGGGTTTTTGATAGGCCAAAAATTCTCCAAATTAATACAAAACAGGTTATCTACTGACCTTATTCTTCAAAATCAATTACTCCCTTTTGCTCAACTCCCAAATTCTCAAACACTTATACATACTTTATCTCAAACAAACAAGAACAAGTTCCCAAATTATTGGAATGAACTCAAAGGAATTGCTCAAGGAAGTGGTGTCCCCTTTCTCAAT : GATTTATTAAT</gDNA_template>
            <first_frame> N  N  G  H  G  K  H  K  F  G  T  Q  Q  V  R  N  V  *  I  W  P  F  *  R  R  *  G  F  P  N  W  V  F  D  R  P  K  I  L  Q  I  N  T  K  Q  V  I  Y  *  P  Y  S  S  K  S  I  T  P  F  C  S  T  P  K  F  S  N  T  Y  T  Y  F  I  S  N  K  Q  E  Q  V  P  K  L  L  E  *  T  Q  R  N  C  S  R  K  W  C  P  L  S  Q   : *  F  I  N </first_frame>
            <second_frame>  I  M  A  M  G  S  T  N  L  E  P  N  K  L  E  M  Y  E  F  G  P  F  E  E  D  E  G  F  Q  I  G  F  L  I  G  Q  K  F  S  K  L  I  Q  N  R  L  S  T  D  L  I  L  Q  N  Q  L  L  P  F  A  Q  L  P  N  S  Q  T  L  I  H  T  L  S  Q  T  N  K  N  K  F  P  N  Y  W  N  E  L  K  G  I  A  Q  G  S  G  V  P  F  L  N  :  D  L  L   </second_frame>
            <third_frame>   *  W  P  W  E  A  Q  I  W  N  P  T  S  *  K  C  M  N  L  A  L  L  K  K  M  R  V  S  K  L  G  F  *  *  A  K  N  S  P  N  *  Y  K  T  G  Y  L  L  T  L  F  F  K  I  N  Y  S  L  L  L  N  S  Q  I  L  K  H  L  Y  I  L  Y  L  K  Q  T  R  T  S  S  Q  I  I  G  M  N  S  K  E  L  L  K  E  V  V  S  P  F  S  M :   I  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0110O22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40961" stop="40662"/>
                    <exon start="40585" stop="40577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAMGSTNLEPNKLEMYEFGPFEEDEGFQIGFLIGQKFSKLIQNRLSTDLILQNQLLPFAQLPNSQTLIHTLSQTNKNKFPNYWNELKGIAQGSGVPFLNDLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 109 chains have been computed
$ 
$ memory statistics:
$ 44760 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2131 bytes was the average size of a spliced alignment
$ 14192 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1774 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:20:31
-->
