<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:24:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745538" ref_strand="+" ref_description="SGN-E745538 [GI|47105916]">
      <seq>atcatgagtagaaccaaatggctgttttatcaaaaatgaatgaaagttttgctgttgaagaagcagcttccgccggtttgaaatcaatggagaatttaatccgattggtttctcatgaaccggttcaggctgattgccgtgaaatggctgattttacggtttcgaagttcaaaaaggtgatttcaattttggaccggaccggtcatgctcggttccggcgaggaccggttcaggctcaggctccggctccggttcaggttagagctccggttcgtggtccggtttatcctgattcgtttacttcgttgtctcttgctccgtcgttaagctttgctacggcgaaggagagacttgctccgtcgttaagctttgcttcggcgaaggagagaccggtggtgcaggtgcagacggcgttgacgcttgacttttcgaagctgaatgttaaccgtccgatcgggaattcaagtgcttttactgcttttactgtgaaatctaaggaggttttaatggcggatccgacgccgacgaactcgtcgtcgtttatgtcgacgattaccggcgaagcaactgtatctaatggtaagcaagtttcttcttctatgttgttgcttccgccacaggctgtgaattttccgaccaccggaaaacgttgccgcgagcatgaacaatctgatgctatctccggcagcaaatccaccggctccggcaagtgtcactgcaaaaagaggaaagctaaggatcggaaagtgattaggattccggcgataagtacgagggtggctgatataccgggagacgagttttcatggaggaaatacgggcaaaagccgatcaagggttcaaaatacccaaggggttattacaagtgtagcagcttacgtggatgtccagcaaggaaacacgtggagcgcgcgatggacgatccaacgatgctgattgtgacttatgaagatgaacattgtcataatccagttgctgcgatgcatgggaacagttctcaaatggtgaattttgggttaatggaaaagaagtagggggtgaaatgaagatagaggagagttgtagggtgattttgtagtttggaatagttggggggttgaagttatatttgggaaaagttataagggttaaaagagtagagagtaggaagttgtgggaattggtttgttatgtaaatttggaaagattttaggggttgaaagagaaaaaaaaagaaaagtttcgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="7282" stop="5106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6982" g_stop="6256" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6255" i_stop="6084" i_length="172">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6083" g_stop="5958" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="853" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5957" i_stop="5780" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5779" g_stop="5407" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="1226" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5406" i_stop="5303" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5302" g_stop="5284" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1227" r_stop="1245" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E745538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6982" e_stop="6256"/>
          <exon e_start="6083" e_stop="5958"/>
          <exon e_start="5779" e_stop="5407"/>
          <exon e_start="5302" e_stop="5284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAGTAGAACCAAATGGCTGTTTTATCAAAAATGAATGAAAGTTTTGCTGTTGAAGAAGCAGCTTCCGCCGGTTTGAAATCAATGGAGAATTTAATCCGATTGGTTTCTCATGAACCGGTTCAGGCTGATTGCCGTGAAATGGCTGATTTTACGGTTTCGAAGTTCAAAAAGGTGATTTCAATTTTGGACCGGACCGGTCATGCTCGGTTCCGGCGAGGACCGGTTCAGGCTCAGGCTCCGGCTCCGGTTCAGGTTAGAGCTCCGGTTCGTGGTCCGGTTTATCCTGATTCGTTTACTTCGTTGTCTCTTGCTCCGTCGTTAAGCTTTGCTACGGCGAAGGAGAGACTTGCTCCGTCGTTAAGCTTTGCTTCGGCGAAGGAGAGACCGGTGGTGCAGGTGCAGACGGCGTTGACGCTTGACTTTTCGAAGCTGAATGTTAACCGTCCGATCGGGAATTCAAGTGCTTTTACTGCTTTTACTGTGAAATCTAAGGAGGTTTTAATGGCGGATCCGACGCCGACGAACTCGTCGTCGTTTATGTCGACGATTACCGGCGAAGCAACTGTATCTAATGGTAAGCAAGTTTCTTCTTCTATGTTGTTGCTTCCGCCACAGGCTGTGAATTTTCCGACCACCGGAAAACGTTGCCGCGAGCATGAACAATCTGATGCTATCTCCGGCAGCAAATCCACCGGCTCCGGCAAGTGTCACTGCAAAAAGAGGTACTTCTCTCGTTTTTCCGTTTATTTCGACTATAAATAGCGCGTGATATCCACGCTCCTTGTAGCGCTTTTTCCTCATCGTTGTTTGACTTTCATAGCATTTACGTTTTTTTTGAAGTAAGGTCTCGAGAGGATAATGTATGTAATTTTTATTCTATTTTATGAAAAACAGGAAAGCTAAGGATCGGAAAGTGATTAGGATTCCGGCGATAAGTACGAGGGTGGCTGATATACCGGGAGACGAGTTTTCATGGAGGAAATACGGGCAAAAGCCGATCAAGGGTTCAAAATACCCAAGGTAATTACAATGTACCTATCAATCACGACCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTAAATCAATTAGATGAAGGACTAACGATTATTTTTACGTTCGATTAGGGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTCGCAATTTTTGACTCCTTTTACCTTTTTAATTTTGTTACTCCTATGATTAGCATGAAAATATATTTAAGGATATCTAAGAAAAAAGAAAAAATTTAAATTAATCTAAGAAAAACAAATAAAAATTAA</genome_strand>
        <mrna_strand>ATCATGAGTAGAACCAAATGGCTGTTTTATCAAAAATGAATGAAAGTTTTGCTGTTGAAGAAGCAGCTTCCGCCGGTTTGAAATCAATGGAGAATTTAATCCGATTGGTTTCTCATGAACCGGTTCAGGCTGATTGCCGTGAAATGGCTGATTTTACGGTTTCGAAGTTCAAAAAGGTGATTTCAATTTTGGACCGGACCGGTCATGCTCGGTTCCGGCGAGGACCGGTTCAGGCTCAGGCTCCGGCTCCGGTTCAGGTTAGAGCTCCGGTTCGTGGTCCGGTTTATCCTGATTCGTTTACTTCGTTGTCTCTTGCTCCGTCGTTAAGCTTTGCTACGGCGAAGGAGAGACTTGCTCCGTCGTTAAGCTTTGCTTCGGCGAAGGAGAGACCGGTGGTGCAGGTGCAGACGGCGTTGACGCTTGACTTTTCGAAGCTGAATGTTAACCGTCCGATCGGGAATTCAAGTGCTTTTACTGCTTTTACTGTGAAATCTAAGGAGGTTTTAATGGCGGATCCGACGCCGACGAACTCGTCGTCGTTTATGTCGACGATTACCGGCGAAGCAACTGTATCTAATGGTAAGCAAGTTTCTTCTTCTATGTTGTTGCTTCCGCCACAGGCTGTGAATTTTCCGACCACCGGAAAACGTTGCCGCGAGCATGAACAATCTGATGCTATCTCCGGCAGCAAATCCACCGGCTCCGGCAAGTGTCACTGCAAAAAGAG............................................................................................................................................................................GAAAGCTAAGGATCGGAAAGTGATTAGGATTCCGGCGATAAGTACGAGGGTGGCTGATATACCGGGAGACGAGTTTTCATGGAGGAAATACGGGCAAAAGCCGATCAAGGGTTCAAAATACCCAAG..................................................................................................................................................................................GGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTCGCA........................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356630" ref_strand="-" ref_description="SGN-E356630 [cTOS-21-D14]">
      <seq>tttttttttttgcgaaacttttctttttttttctctttcaacccctaaaatctttccaaatttacataacaaaccaattcccacaacttcctactctctactcttttaacccttataacttttcccaaatataacttcaaccccccaactattccaaactacaaaatcaccctacaactctcctctatcttcatttcaccccctacttcttttccattaacccaaaattcaccatttgagaactgttcccatgcatcgcagcaactggattatgacaatgttcatcttcataagtcacaatcagcatcgttggatcgtccatcgcgcgctccacgtgtttccttgctggacatccacgtaagctgctacacttgtaataaccccttgggtattttgaacccttgatcggcttttgcccgtatttcctccatgaaaactcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="5106" stop="6317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5397" g_stop="5769" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5770" i_stop="5942" i_length="173">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5943" g_stop="6017" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="443" r_length="70" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E356630" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356630" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5397" e_stop="5769"/>
          <exon e_start="5943" e_stop="6017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAAAAATTGCGAAACTTTTCTTTTTTTTTCTCTTTCAACCCCTAAAATCTTTCCAAATTTACATAACAAACCAATTCCCACAACTTCCTACTCTCTACTCTTTTAACCCTTATAACTTTTCCCAAATATAACTTCAACCCCCCAACTATTCCAAACTACAAAATCACCCTACAACTCTCCTCTATCTTCATTTCACCCCCTACTTCTTTTCCATTAACCCAAAATTCACCATTTGAGAACTGTTCCCATGCATCGCAGCAACTGGATTATGACAATGTTCATCTTCATAAGTCACAATCAGCATCGTTGGATCGTCCATCGCGCGCTCCACGTGTTTCCTTGCTGGACATCCACGTAAGCTGCTACACTTGTAATAACCCCTAATCGAACGTAAAAATAATCGTTAGTCCTTCATCTAATTGATTTAAACTAAAATTAACGATCGTGATTGATAGGTACATTGTAATTACAAACTAAAATTAACGATCGTGATTGATAGGTACATTGTAATTACAAACTAAAATTAACGGTCGTGATTGATAGGTACATTGTAATTACCTTGGGTATTTTGAACCCTTGATCGGCTTTTGCCCGTATTTCCTCCATGAAAACTCGTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGCGAAACTTTTCTTTTTTTTTCTCTTTCAACCCCTAAAATCTTTCCAAATTTACATAACAAACCAATTCCCACAACTTCCTACTCTCTACTCTTTTAACCCTTATAACTTTTCCCAAATATAACTTCAACCCCCCAACTATTCCAAACTACAAAATCACCCTACAACTCTCCTCTATCTTCATTTCACCCCCTACTTCTTTTCCATTAACCCAAAATTCACCATTTGAGAACTGTTCCCATGCATCGCAGCAACTGGATTATGACAATGTTCATCTTCATAAGTCACAATCAGCATCGTTGGATCGTCCATCGCGCGCTCCACGTGTTTCCTTGCTGGACATCCACGTAAGCTGCTACACTT.............................................................................................................................................................................GTA-A---TAA-CCCCTTGGGTATTTTGAACCCTTGATCGGCTTTTGCCCGTATTTCCTCCATGAAAACTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746736" ref_strand="+" ref_description="SGN-E746736 [GI|25140459]">
      <seq>gatcaagggttcaaaatacccaaggggttattacaagtgtagcagcttacgtggatgtccagcaaggaaacacgtggagcgcgcgatggacgatccaacgatgctgattgtgacttatgaagatgaacattgtcataatccagttgctgcgatgcatgggaacagttctcaaatggtgaattttgggttaatggaaaagaagtagggggtgaaatgaagatagaggagagttgtagggtgattttgtagtttggaatagttggggggttgaagttatatttgggaaaagttataagggttaaaagagtagagagtaggaagttgtgggaattggtttgttatgtaaatttggaaagattttaggggttgaaagagaaaaaaaaagaaaagtttcgcccnnaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="6281" stop="5108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5981" g_stop="5958" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5957" i_stop="5780" i_length="178">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5779" g_stop="5410" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="394" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="424"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E746736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5981" e_stop="5958"/>
          <exon e_start="5779" e_stop="5410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAGGGTTCAAAATACCCAAGGTAATTACAATGTACCTATCAATCACGACCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTGTAATTACAATGTACCTATCAATCACGATCGTTAATTTTAGTTTAAATCAATTAGATGAAGGACTAACGATTATTTTTACGTTCGATTAGGGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTC</genome_strand>
        <mrna_strand>GATCAAGGGTTCAAAATACCCAAG..................................................................................................................................................................................GGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211928" ref_strand="-" ref_description="SGN-E211928 [cLEC-66-E6]">
      <seq>gaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacagctggtggggtgtggtattcattagctaaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataattttcttccttcacaagttatgaagagaaaactacatgattttgtttttcaatcaatttttgatagttaccttgaacatgtagttgttgtttacatgtaaacattgaaaatgttgtacaactcttttttgtcttgaaatgcttagggtatttcttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="15137" stop="13143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14837" g_stop="14702" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14048" g_stop="13905" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="280" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13904" i_stop="13807" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13806" g_stop="13435" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="652" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E211928" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14837" e_stop="14702"/>
          <exon e_start="14048" e_stop="13905"/>
          <exon e_start="13806" e_stop="13435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATGTTGTACAACTCTTTTTTGTCTTGAAATGCTTAGGGTATTTCTTTTCATCTGTCTA</genome_strand>
        <mrna_strand>GAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATGTTGTACAACTCTTTTTTGTCTTGAAATGCTTAGGGTATTTCTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203675" ref_strand="+" ref_description="SGN-E203675 [cLEC-15-D23]">
      <seq>tttttttttgaaaagaaataccctaagcatttcaagacaaaaaagagttgtacaacattttcaatgtttacatgtaaacaacaactacatgttcaaggtaactatcaaaaattgattgaaaaacaaaatcatgtagttttctcttcataacttgtgaaggaagaaaattataaatattgaactctatggaaccaactagcaatctttttatttacgatgactatcgatatcggacattatcttaggcaatttgttcttcttctgttgatatttagctaatgaataccacaccccaccagctgtgttgatcactaaaccagtgacattcaaagcatgtacctctactcctcccaacaggacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="13143" stop="14099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13435" g_stop="13799" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E203675" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13435" e_stop="13799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGATGAAAAGAAATACCCTAAGCATTTCAAGACAAAAAAGAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACATTATCTTAGGCAATTTGTTCTTCTTCTGTTGATATTTAGCTAATGAATACCACACCCCACCAGCTGTGTTGATCACTAAACCAGTGACATTCAAAGCATGTACCTCTACTCCTCCCAACAGGACAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTGAAAAGAAATACCCTAAGCATTTCAAGACAAAAAAGAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACATTATCTTAGGCAATTTGTTCTTCTTCTGTTGATATTTAGCTAATGAATACCACACCCCACCAGCTGTGTTGATCACTAAACCAGTGACATTCAAAGCATGTACCTCTACTCCTCCCAACAGGACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298117" ref_strand="+" ref_description="SGN-E298117 [cLEW-9-A13]">
      <seq>gagttgtgcaacattctcaatgtttacatgtaaacaacaactacttgttcaaggtaactatcaaaaattgattgaaaaacaaaatcatgtagttttctcttcatgacttgtgaaggaagaaaattttaaatgttgaactctatggaaccaactagcaatctttttatttacgaggactatcgatttcggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="13179" stop="13971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13479" g_stop="13671" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E298117" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13479" e_stop="13671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACAT</genome_strand>
        <mrna_strand>GAGTTGTGCAACATTCTCAATGTTTACATGTAAACAACAACTACTTGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATGACTTGTGAAGGAAGAAAATTTTAAATGTTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGAGGACTATCGATTTCGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389486" ref_strand="+" ref_description="SGN-E389486 [TUS-4-C24](-)">
      <seq>cactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacagctggtggggtgtggtattcattagctaaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataattttcttccttcacaagttatgaagagaaaactacatgattttgtttttcaatcaatttttgatagttaccttgaacatgtagttgttgttacatgtaaacatgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="15379" stop="13190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15079" g_stop="14973" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14972" i_stop="14861" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14860" g_stop="14702" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="266" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14048" g_stop="13905" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="410" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13904" i_stop="13807" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13806" g_stop="13490" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="725" r_length="315" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E389486" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15079" e_stop="14973"/>
          <exon e_start="14860" e_stop="14702"/>
          <exon e_start="14048" e_stop="13905"/>
          <exon e_start="13806" e_stop="13490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATG</genome_strand>
        <mrna_strand>CACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTG-TTACATGTAAACA-TGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550101" ref_strand="+" ref_description="SGN-E550101 [TUS-5-C36](-)">
      <seq>cggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacagctggtggggtgtggtattcattagctaaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataattttcttccttcacaagttatgaagagaaaactacatgattttgtttttcaatcaatgtttgatagttaccttgaacatgtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="16688" stop="13217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16388" g_stop="16364" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16363" i_stop="15084" i_length="1280">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15083" g_stop="14973" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="136" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14972" i_stop="14861" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14860" g_stop="14702" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="295" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14048" g_stop="13905" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="439" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13904" i_stop="13807" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13806" g_stop="13517" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="729" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E550101" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16388" e_stop="16364"/>
          <exon e_start="15083" e_stop="14973"/>
          <exon e_start="14860" e_stop="14702"/>
          <exon e_start="14048" e_stop="13905"/>
          <exon e_start="13806" e_stop="13517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTT</genome_strand>
        <mrna_strand>CGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATGTTTGATAGTTACCTTGAACATGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389749" ref_strand="+" ref_description="SGN-E389749 [TUS-4-C24]">
      <seq>cggattcgctttagcaagcttgaaaggagtaaatattcccatgtatattgccatcaaaaggcttacgccacttgctgtactagtagctggattctttaccggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacactgggtgggggtgtggtattcattagctnaatatcaacagaagaagaacaaattgcctaagataatgtccgatatcgatagtcatcgtaaataaaaagattgctagttggttccatagagttcaatatttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="16787" stop="13300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16487" g_stop="16364" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16363" i_stop="15084" i_length="1280">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15083" g_stop="14973" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="235" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14972" i_stop="14861" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14860" g_stop="14702" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="394" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14048" g_stop="13905" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="538" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13904" i_stop="13807" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13806" g_stop="13600" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="746" r_length="208" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E389749" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16487" e_stop="16364"/>
          <exon e_start="15083" e_stop="14973"/>
          <exon e_start="14860" e_stop="14702"/>
          <exon e_start="14048" e_stop="13905"/>
          <exon e_start="13806" e_stop="13600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGT-GGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATT</genome_strand>
        <mrna_strand>CGGATTCGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACACTGGGTGGGGGTGTGGTATTCATTAGCTNAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550302" ref_strand="+" ref_description="SGN-E550302 [TUS-5-C36]">
      <seq>cggattcgctttagcaagcttgaaaggagtaaatattcccatgtatattgccatcaaaaggcttacgccacttgctgtactagtagctggattctttaccggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgttttcttccagaccatgtaccttgtgttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagtttcttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgttaactcggctttaactaccacaattgtcggagtcctcaaaggagttggatctacgacacttggttttgtcctgttgggaggagtagaggtacatgctttgaatgtcactggtttagtgatcaacacgctggtggggtgtggtattcattagcntaatatcnacagaagaagaacaattgcctaagatatgtccgatatcgatagtcatcgtaaataaaagattgctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="16787" stop="13329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16487" g_stop="16364" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16363" i_stop="15084" i_length="1280">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15083" g_stop="14973" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="235" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14972" i_stop="14861" i_length="112">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14860" g_stop="14702" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="394" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14048" g_stop="13905" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="538" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13904" i_stop="13807" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13806" g_stop="13629" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="712" r_length="174" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E550302" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16487" e_stop="16364"/>
          <exon e_start="15083" e_stop="14973"/>
          <exon e_start="14860" e_stop="14702"/>
          <exon e_start="14048" e_stop="13905"/>
          <exon e_start="13806" e_stop="13629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACGGTATGTGTACATCTTAAATCTTTCTTTTCATTTCTTCAACTACTACGATTATCGGAGTCCTACATTTCACTTCAAAAATTGTACTTGTTCATTCACAGACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGT</genome_strand>
        <mrna_strand>CGGATTCGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG................................................................................................................ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG..................................................................................................ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACAC-GCTGGTGGGGTGTGGTATTCATTAGCNTAATATCNACAGAAGAAGAAC-AATTGCCTAAGAT-ATGTCCGATATCGATAGTCATCGTAAAT-AAAAGATTGCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231740" ref_strand="+" ref_description="SGN-E231740 [cLED-4-D20]">
      <seq>ggatttgctttagcaagcttgaaaggagtaaatattcccatgtatattgccatcaaaaggcttacgccacttgctgtactagtagctggattctttaccggaaagggtagacctacaactcaggtaacactttccgtattactaattgctgccggagttcttattgcagctcttggagatttttcctttgatctttttggatacagtttggcctttatttctgtgttcttccagaccatgtaccttgagttggttgagaagtcaggagcagaggatgggctttcgtctattgagatcatgttttacaacagatacttatctttgccatttctgctattcctcatcatagccacaggagaatttccaaattctttatctcttttatttgcaaagagtagttcaatatcatttcttgctattcttattctttcattggtgatgggcatcatcttgaactatacgatgttcttgtgcaccatcgctaactcggctttaactaccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="16786" stop="13637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16486" g_stop="16364" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16363" i_stop="15084" i_length="1280">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15083" g_stop="14973" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="234" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14972" i_stop="14861" i_length="112">
            <donor d_prob="0.738" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14860" g_stop="14702" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="393" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14048" g_stop="13937" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="505" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E231740" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16486" e_stop="16364"/>
          <exon e_start="15083" e_stop="14973"/>
          <exon e_start="14860" e_stop="14702"/>
          <exon e_start="14048" e_stop="13937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAGGTTGGTGATTAAGATATCTACCTGGTTTCATACTAGTTGGGTAGAGTAACTTCATTTTAAAGTCCTCTCAGTGTTGCTTATTACCCTGATAGATCTGTGAATCTCTTTGATGCTGTTTTATATTTTTTTCATTTCTGTGTATACTCTAACTTCACTGTATTTTATTTGGAATTTGATAAATATTTGGCTCTGGTAGTGTGGAAACATAGAGTGCTGATTTTCTTATTCAATTATCTATCATGTGTCTGGCAGGGGCAGTATACTATATAATAGACTGTCTCTACTTACGTAGTTACTTTTGTTTTTGCTTTCCGTGACTTCTACACAGATGTTCATGCACTAGTCACTATAAATAAAAGAATCCAAATGTGTATACATATTTGTAAACACCAGTAATCTGATTCTGCCTTTTAGCTTTCTCAACTTCTTTTGTTTACGCCTTGGTTTCATTCCTCCATGTGAGGAAACTGAGTGGAAGTTTTATACTAATAGTTACTCGATTTGTGTCTTTAATGAATTTGGAGAAGTGAAAACCACAGAGGTAAACTTTTCCTTAGTTTACTATGTAGATGATATTGCCTGAATTACTCTATGTAAGATAACTGACGAAAAAGTCAGGCCCGTAATCAACGGAATGGATTTCAAGCTATGGGTAGAGTTTCTTGCTAGTGGACTAGTCCAACGGTTGTATACCATTGACTATTCTATCAGGGCAAACAGTTAAAATAAAGCTAGTGCAAATAGCAAAATGCAGTCAGAAGATTAGTTTGGAGAAGTATTAATTTGGGAAAAGATAGTAACCCCTTAACTAACGTAATGGTCATCATTTGATCCTTAAACAATGCTTAAGCCACTACATTAACCTCGAGTCTAATGTATTCACGAGGTAAACAATTTAGTGTGTTCACCACCAAACTAGTTGGCTAATGAACTTTTTCTACCCCTTTAAGATACAGGATAGTTAGTCTCAGACAAAATAGTAGCCGACACAGGAAAAGTTCGAGGAGTGCATTCATTCCGACATTTGTAAAGTATAGGTGGGTTTGGCTTGAAGACTCGAGTAGAAGTTGACTCAATAATAAGGCACTAGACTTTATCTTTTGTTTACTAATATATATTCTTCCCTACAGATGCCGAATTGATATATCGTTGATTAATGAGAAAGCTATGTCCATCTACTATCGCCTACCATTTAATCACCCATTGGGTTTTTGCCTAACCATCTACTAAGTGGCACCACCTATAGTGTGTCTACTAATGGGATTTCTGTCTTATTTCAGGTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAGGTCTGGCCTTGTTTTTTAATCAATTAGTGCTTTTTGTTGCATGTATCTTTTCTCTTATTGTGATTAAATTATAATTCCATCTCTTAGTTACATGCCCTTGTTTCATTTGCAGACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAGGTTTGTTTCTTTGCTATATTCAGTTTAGTCAACATAGTCCTTTATTGATACTAAGAAACAAATTAGTTGGTAGTTACTGCTTGAGTAATGCTGGACTGAGTTATCAACTTATCATTGCCTTTATTTTGTCAAACAAGTTAAAGAGAAAAGGCAATCATAAAGGGCGATAATACAGAAGCACGTATCAATAAACTAGAATGATCAATGAAGGCTAGAATGAAGTATGAGACTAGTATTTCATATCCTAACGGAGGAAAAAAGACTAGTTGGTTTCTTATAGTATGTCGTAGCTTTGGTGGAAAGTTGCTCAGCATATGTGCATGTACGAAGTAGATTGTACACGGTAGATTAGGTAGGTGTGTGCATTGACTCAGACACCCTTGTTACAAAATCAAGAAATTGATATATTGCCAACTTGTAGTAATTAGGATATATATAAATTAATCATTTGACTTATACTTTCTTTTCTGAAATGGTTTAACTATACTTTCTAAGTTGCGATCTGCTATATGAATCCTCTATACTTGTGTATCCTAATACTTGAAGTTTTAGAGGTTCCCTCGGCTGATGTACTAGTTGAAGTCTATCTTTATCCTTTTTGAATGCTTATTGAAATTTTGTGGTTCTAAACTCGCCTTTTTCCCCATGAACAGAGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAA</genome_strand>
        <mrna_strand>GGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTGTTCTTCCAG................................................................................................................ACCATGTACCTTGAGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGATACTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGCTAACTCGGCTTTAACTACCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261669" ref_strand="+" ref_description="SGN-E261669 [cLEG-61-C20]">
      <seq>ttttatatatacttatagataaaggaggtaacttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattttagtgtgttaagatttgattttgagttaattgaaagcttgtatctgaagtggggattgtgcttttgggttttttcttatatgggtgtttttcattttctaatttcgtgcttaagttatagagatttcgataaattggtgcagaagatttgtttttgagttgattgaaaggtgtattgagctcaattgagcaatcttaagcagagattgatttggttagcagatttggagtgcatgtgatattttttttggcttttatatcaatctgggtgntgttctttttataatttcttgattcaattgcagattttttttttgtgtaaataaaggactgtcaatgaagtaagtgataagctgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="18825" stop="17545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18525" g_stop="17845" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E261669" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18525" e_stop="17845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTATATCAATCTGGTTGTTGTTCTTTTTATAATTTCTTGATTCAATTGCAGATTTTTTTTTTGTGTAAATAAAGGACTGTCAATGAAGTAAGTGATAAGCTGTCTT</genome_strand>
        <mrna_strand>TTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTATATCAATCTGGGTGNTGTTCTTTTTATAATTTCTTGATTCAATTGCAGATTTTTTTTTTGTGTAAATAAAGGACTGTCAATGAAGTAAGTGATAAGCTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311838" ref_strand="+" ref_description="SGN-E311838 [cLEZ-9-L16]">
      <seq>ttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattttagtgtgttaagatttgattttgagttaattgaaagcttgtatctgaagtggggattgtgcttttgggttttttcttatatgggtgtttttcattttctaatttcgtgcttaagttatagagatttcgataaattggtgcagaagatttgtttttgagttgattgaaaggtgtattgagctcaattgagcaatcttaagcagagattgatttggttagcacatttggagtgcatgtgatattttttttggctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="18793" stop="17648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18493" g_stop="17948" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E311838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18493" e_stop="17948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTA</genome_strand>
        <mrna_strand>TTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCACATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324193" ref_strand="+" ref_description="SGN-E324193 [cTOC-4-H6]">
      <seq>tttttctttgttagctgccgataaaaatggcctatggtcatcatcaacaaacaaaatatattaataataataacaaaaagatccctttttttttacaccaaattccaagattttttttttttaacactctctacactacagactgcttgatccaaaaaaaataaatatttttttcaattgttatatactcagaaaaatcatgtaatcacgagaatttttatatatacttatagataaaggaggtaacttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattttagtgtgttaagatttgattttgagttaattgaaagcttgtatctgaagtggggattgtgcttttgggttttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="19040" stop="17827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18740" g_stop="18127" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E324193" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18740" e_stop="18127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTGTTAGCTGCCGATAAAAATGGCCTATGGTCATCATCAACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTTACACCAAATTCCAAGA-TTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTT</genome_strand>
        <mrna_strand>TTTTTCTTTGTTAGCTGCCGATAAAAATGGCCTATGGTCATCATCAACAAACAAAATATATTAATAATAATAACAAAAAGATCCC-TTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330998" ref_strand="+" ref_description="SGN-E330998 [cTOD-10-N14]">
      <seq>aacaaacaaaatatattaataataataacaaaaagatccctttttttttacaccaaattccaagattttttttttttaacactctctacactacagactgcttgatccaaaaaaaataaatatttttttcaattgttatatactcagaaaaatcatgtaatcacgagaatttttatatatacttatagataaaggaggtaacttttgctattttgggaagtgggtattgtgattttgggggtgattttccatttttgtgcaaaagatctgtttttgagttaattgaaagctgtatctgaagtgggtgttttaccttttcccagttttgtgcttcgattatagagatttcagtaaatttagtgtgaaagatttgtttttttagttaattgatagcttgtatctgaagtgggtattgtggttttgagtttttccttatctgggtgtttgatgttttctaattttgtgctttgattatagagatttcagtaattntagtgtgttaagatttgattttgagttaattgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="18995" stop="17867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18695" g_stop="18167" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E330998" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18695" e_stop="18167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTT-AACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGC</genome_strand>
        <mrna_strand>AACAAACAAAATATATTAATAATAATAACAAAAAGATCCC-TTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTNTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547684" ref_strand="+" ref_description="SGN-E547684 [TUS-71-L2]">
      <seq>tgtagctgctctcaactccaagctttcacttccttcagggaagcagcaacagtccaaatttgctgcccaatcagtgtgacgtagtggctcaaattgaacatgaggacattgctgttatgagcctcatcaggcctgatgaatgggttgtaatgttggatgagcgtggtcatgatgttggatctgagcagatggcttctttaatcggagaggctggaaacaagggagcatcaagcttactcttttgcataggtggaccttatggacatggtagacatttgcgagagagagctaacgtatcagtcaaactgtcatccttagtcttgaatcatgagattgcgttagttgtactgatagaacaactttacagagggtggaccattcttaaaggacagaaataccatcactagacattgaactatttcttggaattggaatgacttccaaatttcattcaaccaccatcaaagcagctaaactcaggtttggaatacctttttgaagatgacctcgtatatagaggatgtgcctaaccaccctaacgaggaggaggtggttgccatggaattagttgaggtactcgcaagctagccaaacaccacagttatcaaaacaaaataaaaagaggaggtggtggttgaaaaaagtgagagggacctcattcgtagatcttagaagtgttgaggtcgtgacatgtggattgcaaaaccagatgatggtacctctctcgtgatggtgtgtcttgccacgcctactagttaaggtttgcctgttcaaatctaacgttggaatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="19675" stop="22668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19975" g_stop="20012" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20013" i_stop="20116" i_length="104">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20117" g_stop="20154" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="76" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20155" i_stop="20969" i_length="815">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20970" g_stop="21036" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="143" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21037" i_stop="21103" i_length="67">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21104" g_stop="21181" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="221" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21182" i_stop="21338" i_length="157">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21339" g_stop="21484" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="367" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21485" i_stop="21940" i_length="456">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21941" g_stop="22368" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="794" r_length="427" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E547684" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19975" e_stop="20012"/>
          <exon e_start="20117" e_stop="20154"/>
          <exon e_start="20970" e_stop="21036"/>
          <exon e_start="21104" e_stop="21181"/>
          <exon e_start="21339" e_stop="21484"/>
          <exon e_start="21941" e_stop="22368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGCTGCTCTCAACTCCAAGCTTTCACTTCCTTCAGGTTCCTCAATTTCCCCTATTTCAATTGATTGTGCCGCTATTTAGGTTAATTCTTCGTTTCTGTTTTGTGTATTTAGGGTTTTAATCTTTTGATAATTTCTTCAGGGAAGCAGCAACAGTCCAAATTTGCTGCCCAATCAGTGGTAAAGTTGCTTAATTTCTCTCTAATTTTACTTAATTCAGCTAAATCAAACAACTTATAAGTGTAACAGTTGCTTGTAATTTGTATTTTTTTTTTGGGATATAGAGAGCAATACCTATACGCATATTAACTGTGGGGAAGAATAGGTCGAAAGGAGTGCAGTTTATAGTTGATGAGTATATGAAGAAGCTCAGGAATTATTGTAGCGTTGATGATGTTCGAATAAAATCTAATCCCAAAAATGCGCGGTATGTTGAAATATTGTCGATTTTTTCGGGTGGATTTGGTGTATTTTTATTGGAAATGGCTGAAAATTGTGAGTTTTAGTGTTTGGTTGAACACTAGATGTAATGGTAATGGTAATTTTACTTAGGGATTGAGATGTTGAAGGGATTGACGGAGTTACCTGGTATGTCTTGTTGTTGGGAGGTGATAGGTATCTGTCGAGGTGTGTGACGGTCATCAAAAAGTGTACCTTCTAACAAAATAACAACTATGTGTCAATTATCTCAAACAAGTCGAGTCGGCTATATGTATTCTCACTGACCATGTTCTCTGGTTAATTTCATCCCAGAAATGATCCAACAATAATATACCCAGTGCAATCCTACAAGTGGGGAAGGGTAGAGAGGTTGTTTCCAATAGACCTTCAGCTCAAAATCTTAGAAATGCTTGTGTATTGAAATAGAGTTGTTTACTTTACAGATATCCCAATGTCCCTAGTGGAATCCGTGACAATGTGTTTTACATATTATGGATGGGATATAAGTCCCGAAAGTGTTAATTTTTAAAGCTTGTTATTTTCATTTGAAACAGTGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGGGTAAGCATTCAGAAGTAATTAGAAAATAAAAATTACCCTCTCACCGTCCTAATCTGTTTAAAACCAGGTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCCGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAGGTGAGTTATGGTTCATTATTGCAGAGTCTTTTGGTCCTGGTATCATCTATCATGAAATGACCTTGCAGATTTTAAAGTCATCACTGGGAAGGGGATCTACACGGAAAAAAAAATAGATACTAGAATTTTTGAATGATTTGTGTCCTCTGTCTTGTAGGGAGCATCAACCTTACTCTTTTGCATAGGTGGACCTTATGGACATGGTAGACATTTGCGAGAGAGAGCTAACGTATCAGTCAAACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAGGTAAGAGACTGGAACAAACTTTTATTCTTTTGAAGTGCTGGTGCCACTAACCCCTCGGTCCCTCATTTATGCTGGTGTTGAGAATATAGTTTCACAACTTGATGTATTCATGCGTCTTGCGTCCTAGTTGCTCTGTGCTCATTAGTCTTTCGAACTAAAAAGCAAACAATATCCTCTGTCCCTCTCCGTATTAGAGAGAGTATTATTTTAGTCAAGCAAAAGCTTCTTGGAAACGAGATTCACTGACATGTATTCTACAACTTTGGCGGATACTGTGCTAACAATGGCTAGCCACCTAATCCTCCTTTACCTTCCTTATAGGTTCCTTTCATCCATTTATGTCCATAGTGTCTTGGCATATTAATCTTTTTGTCACAAATCTCATTGTTTATCTATCATGTTCATACATGAACTTCCAGAAACCTAATCGATACGTTGTTCTGAATATATTGACAGAGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCGAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTACATAGAGGATGTGCCTAACCACCCTAACGAGGCGGAGGTGGTTGCCATGGAATTAGTTGAGGCTCTCGCAAGCTAGCCCAAACACCACAGTTATCAAAATAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACATGTGGATTGCAAAACCAGATGATGGTACCTCTATCGTGATGGTGTGTCTTGCCACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGA</genome_strand>
        <mrna_strand>TGTAGCTGCTCTCAACTCCAAGCTTTCACTTCCTTCAG........................................................................................................GGAAGCAGCAACAGTCCAAATTTGCTGCCCAATCAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGG...................................................................GTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCTGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAG.............................................................................................................................................................GGAGCATCAAGCTTACTCTTTTGCATAGGTGGACCTTATGGACATGGTAGACATTTGCGAGAGAGAGCTAACGTATCAGTCAAACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCAAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAAGATGACCTCGTATATAGAGGATGTGCCTAACCACCCTAACGAGGAGGAGGTGGTTGCCATGGAATTAGTTGAGGTACTCGCAAGCTAG-CCAAACACCACAGTTATCAAAACAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACATGTGGATTGCAAAACCAGATGATGGTACCTCTCTCGTGATGGTGTGTCTTGCCACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364914" ref_strand="+" ref_description="SGN-E364914 [cLPP-17-E5]">
      <seq>gtagctgctctcaactccaagctttcacttccttcagggaagcagcaacagtccaaatttgctgcccaatcagtgtgacgtagtggctcaaattgaacatgaggacattgctgttatgagcctcatcaggcctgatgaatgggttgtaatgttggatgagcgtggtcatgatgttggatctgagcagatggcttctttaatcggagaggctggaaacaagggagcatcaagcttactcttttgcataggtggaccttatggacatggtagacatttgcgagagagagctaacgtatcagtcaaactgtcatccttagtcttgaatcatgagattgcgttagttgtactgatagaacaactttacagagggtggaccattcttaaaggacagaaataccatcactagacattgaactatttcttggaattggaatgacttccaaatttcattcaaccaccatcaaagcagctaaactcaggtttggaatacctttttgaagatgacctcgtatatagaggatgtgcctaaccaccctaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="19676" stop="22415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19976" g_stop="20012" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20013" i_stop="20116" i_length="104">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20117" g_stop="20154" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="75" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20155" i_stop="20969" i_length="815">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20970" g_stop="21036" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="142" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21037" i_stop="21103" i_length="67">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21104" g_stop="21181" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="220" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21182" i_stop="21338" i_length="157">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21339" g_stop="21484" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="366" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21485" i_stop="21940" i_length="456">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21941" g_stop="22115" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="541" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E364914" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19976" e_stop="20012"/>
          <exon e_start="20117" e_stop="20154"/>
          <exon e_start="20970" e_stop="21036"/>
          <exon e_start="21104" e_stop="21181"/>
          <exon e_start="21339" e_stop="21484"/>
          <exon e_start="21941" e_stop="22115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTGCTCTCAACTCCAAGCTTTCACTTCCTTCAGGTTCCTCAATTTCCCCTATTTCAATTGATTGTGCCGCTATTTAGGTTAATTCTTCGTTTCTGTTTTGTGTATTTAGGGTTTTAATCTTTTGATAATTTCTTCAGGGAAGCAGCAACAGTCCAAATTTGCTGCCCAATCAGTGGTAAAGTTGCTTAATTTCTCTCTAATTTTACTTAATTCAGCTAAATCAAACAACTTATAAGTGTAACAGTTGCTTGTAATTTGTATTTTTTTTTTGGGATATAGAGAGCAATACCTATACGCATATTAACTGTGGGGAAGAATAGGTCGAAAGGAGTGCAGTTTATAGTTGATGAGTATATGAAGAAGCTCAGGAATTATTGTAGCGTTGATGATGTTCGAATAAAATCTAATCCCAAAAATGCGCGGTATGTTGAAATATTGTCGATTTTTTCGGGTGGATTTGGTGTATTTTTATTGGAAATGGCTGAAAATTGTGAGTTTTAGTGTTTGGTTGAACACTAGATGTAATGGTAATGGTAATTTTACTTAGGGATTGAGATGTTGAAGGGATTGACGGAGTTACCTGGTATGTCTTGTTGTTGGGAGGTGATAGGTATCTGTCGAGGTGTGTGACGGTCATCAAAAAGTGTACCTTCTAACAAAATAACAACTATGTGTCAATTATCTCAAACAAGTCGAGTCGGCTATATGTATTCTCACTGACCATGTTCTCTGGTTAATTTCATCCCAGAAATGATCCAACAATAATATACCCAGTGCAATCCTACAAGTGGGGAAGGGTAGAGAGGTTGTTTCCAATAGACCTTCAGCTCAAAATCTTAGAAATGCTTGTGTATTGAAATAGAGTTGTTTACTTTACAGATATCCCAATGTCCCTAGTGGAATCCGTGACAATGTGTTTTACATATTATGGATGGGATATAAGTCCCGAAAGTGTTAATTTTTAAAGCTTGTTATTTTCATTTGAAACAGTGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGGGTAAGCATTCAGAAGTAATTAGAAAATAAAAATTACCCTCTCACCGTCCTAATCTGTTTAAAACCAGGTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCCGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAGGTGAGTTATGGTTCATTATTGCAGAGTCTTTTGGTCCTGGTATCATCTATCATGAAATGACCTTGCAGATTTTAAAGTCATCACTGGGAAGGGGATCTACACGGAAAAAAAAATAGATACTAGAATTTTTGAATGATTTGTGTCCTCTGTCTTGTAGGGAGCATCAACCTTACTCTTTTGCATAGGTGGACCTTATGGACATGGTAGACATTTGCGAGAGAGAGCTAACGTATCAGTCAAACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAGGTAAGAGACTGGAACAAACTTTTATTCTTTTGAAGTGCTGGTGCCACTAACCCCTCGGTCCCTCATTTATGCTGGTGTTGAGAATATAGTTTCACAACTTGATGTATTCATGCGTCTTGCGTCCTAGTTGCTCTGTGCTCATTAGTCTTTCGAACTAAAAAGCAAACAATATCCTCTGTCCCTCTCCGTATTAGAGAGAGTATTATTTTAGTCAAGCAAAAGCTTCTTGGAAACGAGATTCACTGACATGTATTCTACAACTTTGGCGGATACTGTGCTAACAATGGCTAGCCACCTAATCCTCCTTTACCTTCCTTATAGGTTCCTTTCATCCATTTATGTCCATAGTGTCTTGGCATATTAATCTTTTTGTCACAAATCTCATTGTTTATCTATCATGTTCATACATGAACTTCCAGAAACCTAATCGATACGTTGTTCTGAATATATTGACAGAGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCGAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTACATAGAGGATGTGCCTAACCACCCTAACGA</genome_strand>
        <mrna_strand>GTAGCTGCTCTCAACTCCAAGCTTTCACTTCCTTCAG........................................................................................................GGAAGCAGCAACAGTCCAAATTTGCTGCCCAATCAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGG...................................................................GTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCTGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAG.............................................................................................................................................................GGAGCATCAAGCTTACTCTTTTGCATAGGTGGACCTTATGGACATGGTAGACATTTGCGAGAGAGAGCTAACGTATCAGTCAAACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCAAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAAGATGACCTCGTATATAGAGGATGTGCCTAACCACCCTAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549286" ref_strand="+" ref_description="SGN-E549286 [TUS-69-A8](-)">
      <seq>cagttgatagttgatgagtatatgaagaagctcaggaattattgtagcgttgatgatgttcgaataaagtctaatcccaaaaatgcgcgtgacgtagtggctcaaattgaacatgaggacattgctgttatgagcctcatcaggcctgatgaatgggttgtaatgttggatgagcgtggtcatgatgttggatccgagcagatggcttctttaattggagaggctggaaacaagagggtggaccattcttaaaggacagaaataccatcactagacattgaactatttcttggaattggaatgacttccaaatttcattcaaccaccatcaaagcagctaaactcaggtttggaatacctttttgaggatgacctcgtatatagaggatgtgcctaaccaccccaacgaggaggaggtggttgccatggaattagttgaggtacacgcaaattatcccaaacaccacagttatggtggttgaaaagtgagagggacctcattcgtagatcttagaagtgttgaggtcgcgacatcatgccatgcctacttgttgaggtttgtctgtccagatctaacgttggaatgttgacgagcttggcccagacatattgtatccaccacaatgatctaattcactatgcccgcttcaccatttccaatgaatgaagtaaggttttgtgtatttatcctttttgagtctttggatacaaagttagacaaatatgattagatattttttcatttgaaacatttgccaaactatctttcatttttgaagtaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="20013" stop="22845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20313" g_stop="20401" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20402" i_stop="20969" i_length="568">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20970" g_stop="21036" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="156" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21037" i_stop="21103" i_length="67">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21104" g_stop="21181" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="234" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21182" i_stop="21940" i_length="759">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21941" g_stop="22266" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="534" r_length="300" r_score="0.887"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22267" i_stop="22316" i_length="50">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22317" g_stop="22541" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="767" r_length="233" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="800"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E549286" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20313" e_stop="20401"/>
          <exon e_start="20970" e_stop="21036"/>
          <exon e_start="21104" e_stop="21181"/>
          <exon e_start="21941" e_stop="22266"/>
          <exon e_start="22317" e_stop="22541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTATAGTTGATGAGTATATGAAGAAGCTCAGGAATTATTGTAGCGTTGATGATGTTCGAATAAAATCTAATCCCAAAAATGCGCGGTATGTTGAAATATTGTCGATTTTTTCGGGTGGATTTGGTGTATTTTTATTGGAAATGGCTGAAAATTGTGAGTTTTAGTGTTTGGTTGAACACTAGATGTAATGGTAATGGTAATTTTACTTAGGGATTGAGATGTTGAAGGGATTGACGGAGTTACCTGGTATGTCTTGTTGTTGGGAGGTGATAGGTATCTGTCGAGGTGTGTGACGGTCATCAAAAAGTGTACCTTCTAACAAAATAACAACTATGTGTCAATTATCTCAAACAAGTCGAGTCGGCTATATGTATTCTCACTGACCATGTTCTCTGGTTAATTTCATCCCAGAAATGATCCAACAATAATATACCCAGTGCAATCCTACAAGTGGGGAAGGGTAGAGAGGTTGTTTCCAATAGACCTTCAGCTCAAAATCTTAGAAATGCTTGTGTATTGAAATAGAGTTGTTTACTTTACAGATATCCCAATGTCCCTAGTGGAATCCGTGACAATGTGTTTTACATATTATGGATGGGATATAAGTCCCGAAAGTGTTAATTTTTAAAGCTTGTTATTTTCATTTGAAACAGTGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGGGTAAGCATTCAGAAGTAATTAGAAAATAAAAATTACCCTCTCACCGTCCTAATCTGTTTAAAACCAGGTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCCGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAGGTGAGTTATGGTTCATTATTGCAGAGTCTTTTGGTCCTGGTATCATCTATCATGAAATGACCTTGCAGATTTTAAAGTCATCACTGGGAAGGGGATCTACACGGAAAAAAAAATAGATACTAGAATTTTTGAATGATTTGTGTCCTCTGTCTTGTAGGGAGCATCAACCTTACTCTTTTGCATAGGTGGACCTTATGGACATGGTAGACATTTGCGAGAGAGAGCTAACGTATCAGTCAAACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAGGTAAGAGACTGGAACAAACTTTTATTCTTTTGAAGTGCTGGTGCCACTAACCCCTCGGTCCCTCATTTATGCTGGTGTTGAGAATATAGTTTCACAACTTGATGTATTCATGCGTCTTGCGTCCTAGTTGCTCTGTGCTCATTAGTCTTTCGAACTAAAAAGCAAACAATATCCTCTGTCCCTCTCCGTATTAGAGAGAGTATTATTTTAGTCAAGCAAAAGCTTCTTGGAAACGAGATTCACTGACATGTATTCTACAACTTTGGCGGATACTGTGCTAACAATGGCTAGCCACCTAATCCTCCTTTACCTTCCTTATAGGTTCCTTTCATCCATTTATGTCCATAGTGTCTTGGCATATTAATCTTTTTGTCACAAATCTCATTGTTTATCTATCATGTTCATACATGAACTTCCAGAAACCTAATCGATACGTTGTTCTGAATATATTGACAGAGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCGAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTACATAGAGGATGTGCCTAACCACCCTAACGAGGCGGAGGTGGTTGCCATGGAATTAGTTGAGGCTCTCGCAAGCTAGCCCAAACACCACAGTTATCAAAATAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACATGTGGATTGCAAAACCAGATGATGGTACCTCTATCGTGATGGTGTGTCTTGC----CACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGACGAGCTTGGCCCAGACATATTGTATCCACCACAATGATCTAATTCACCATGCCCTCTTCACCATTTCCAAATGAATGAAGTAAGGTTTTGTCTAATTATCCTTTTTGAGTC--T---TACAAAGTTAGACAAATATGATTAGATATTTTTTCATTTGAAACATTTGCCAAACTATCTT</genome_strand>
        <mrna_strand>CAGTTGATAGTTGATGAGTATATGAAGAAGCTCAGGAATTATTGTAGCGTTGATGATGTTCGAATAAAGTCTAATCCCAAAAATGCGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGG...................................................................GTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCCGAGCAGATGGCTTCTTTAATTGGAGAGGCTGGAAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCAAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTATATAGAGGATGTGCCTAACCACCCCAACGAGGAGGAGGTGGTTGCCATGGAATTAGTTGAGGTACACGCAAATTATCCCAAACACCACAG---------T----T---------A--TGGTGGTTG--AAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGCGACAT..................................................CATGCCATGCCTACTTGTTGAGGTTTGTCTGTCCAGATCTAACGTTGGAATGTTGACGAGCTTGGCCCAGACATATTGTATCCACCACAATGATCTAATTCACTATGCCCGCTTCACCATTTCC-AATGAATGAAGTAAGGTTTTGTGTATTTATCCTTTTTGAGTCTTTGGATACAAAGTTAGACAAATATGATTAGATATTTTTTCATTTGAAACATTTGCCAAACTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547683" ref_strand="+" ref_description="SGN-E547683 [TUS-71-L2](-)">
      <seq>aactgtcatccttagtcttgaatcatgagattgcgttagttgtactgatagaacaactttacagagggtggaccattcttaaaggacagaaataccatcactagacattgaactatttcttggaattggaatgacttccaaatttcattcaaccaccatcaaagcagctaaactcaggtttggaatacctttttgaagatgacctcgtatatagaggatgtgcctaaccaccctaacgaggaggaggtggttgccatggaattagttgaggtactcgcaagctagccaaacaccacagttatcaaaacaaaataaaaagaggaggtggtggttgaaaaaagtgagagggacctcattcgtagatcttagaagtgttgaggtcgtgacatgtggattgcaaaaccagatgatggtacctctctcgtgatggtgtgtcttgccacgcctactagttaaggtttgcctgttcaaatctaacgttggaatgttgacgagcttggcccagacatattgtatccaccacaatgatctaattcaccatgccctcttcaccatttccaatgaatggagtaaggttatgtgtatttatccttttttgagtctttggatacaaagttagacaaatatgattagatatttattcatttgaaacatttgccaaactatcttgtaacacaaagctatcattttttgaatgatattttgtttctcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="21121" stop="22885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21421" g_stop="21484" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21485" i_stop="21940" i_length="456">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21941" g_stop="22584" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="713" r_length="649" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="723"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E547683" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21421" e_stop="21484"/>
          <exon e_start="21941" e_stop="22584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAGGTAAGAGACTGGAACAAACTTTTATTCTTTTGAAGTGCTGGTGCCACTAACCCCTCGGTCCCTCATTTATGCTGGTGTTGAGAATATAGTTTCACAACTTGATGTATTCATGCGTCTTGCGTCCTAGTTGCTCTGTGCTCATTAGTCTTTCGAACTAAAAAGCAAACAATATCCTCTGTCCCTCTCCGTATTAGAGAGAGTATTATTTTAGTCAAGCAAAAGCTTCTTGGAAACGAGATTCACTGACATGTATTCTACAACTTTGGCGGATACTGTGCTAACAATGGCTAGCCACCTAATCCTCCTTTACCTTCCTTATAGGTTCCTTTCATCCATTTATGTCCATAGTGTCTTGGCATATTAATCTTTTTGTCACAAATCTCATTGTTTATCTATCATGTTCATACATGAACTTCCAGAAACCTAATCGATACGTTGTTCTGAATATATTGACAGAGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCGAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTACATAGAGGATGTGCCTAACCACCCTAACGAGGCGGAGGTGGTTGCCATGGAATTAGTTGAGGCTCTCGCAAGCTAGCCCAAACACCACAGTTATCAAAATAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACATGTGGATTGCAAAACCAGATGATGGTACCTCTATCGTGATGGTGTGTCTTGCCACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGACGAGCTTGGCCCAGACATATTGTATCCACCACAATGATCTAATTCACCATGCCCTCTTCACCATTTCCAAATGAATGAAGTAAGGTTTTGTCTAATTATCC-TTTTTGAGTC--T---TACAAAGTTAGACAAATATGATTAGATATTTTTTCATTTGAAACATTTGCCAAACTATCTTGTAACACAAAGCTATCATTTTTTGAA-GTTATTTTGTTTCTCCT</genome_strand>
        <mrna_strand>AACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCAAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAAGATGACCTCGTATATAGAGGATGTGCCTAACCACCCTAACGAGGAGGAGGTGGTTGCCATGGAATTAGTTGAGGTACTCGCAAGCTAG-CCAAACACCACAGTTATCAAAACAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACATGTGGATTGCAAAACCAGATGATGGTACCTCTCTCGTGATGGTGTGTCTTGCCACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGACGAGCTTGGCCCAGACATATTGTATCCACCACAATGATCTAATTCACCATGCCCTCTTCACCATTTCC-AATGAATGGAGTAAGGTTATGTGTATTTATCCTTTTTTGAGTCTTTGGATACAAAGTTAGACAAATATGATTAGATATTTATTCATTTGAAACATTTGCCAAACTATCTTGTAACACAAAGCTATCATTTTTTGAATGATATTTTGTTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716240" ref_strand="+" ref_description="SGN-E716240 [FB16CA05]">
      <seq>gtatgatagcaagacgttggtggacttcttcactgaagaagactccttacatcctgccttaactggagtgatagtgtttacgtccactcctgacaaagtaaataacaagtactatctcggtcctgctccactagaagagatggctagccaaattgctactgcctctggtccctgtggaaataaccaggactacatattcaaaatggagaaggctttacatgacatcagtcacgaagacgactacatcacagagctagcaaatgaagtgcgcaaagttcttgggatcacagtgtctgtcccaatggagaagaagttacttagtccttcccaaactccactcaaatcccatatttcccctgtgaaaatcctcccgttgtcggaagctatagctgctgttgctgcagactcttgacaaagaaaatgatctagatatctttaggaggatgatgtatcccttgtgttttttccttttcctctaaacttagactagaatttgggggtggggtgggggtaggataatgagttgagttgacatactaaccaaccagatgactttgtgtggccagtttgaacatggattcttgagttattatgagcactttttgatgaaatctgattagtagcttacatgttgaaaatacatgatcaatttatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="23991" stop="22420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23691" g_stop="23658" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23657" i_stop="23568" i_length="90">
            <donor d_prob="0.018" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23567" g_stop="23527" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="75" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23526" i_stop="23387" i_length="140">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23386" g_stop="23315" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="147" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23314" i_stop="23231" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23230" g_stop="22720" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="658" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E716240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23691" e_stop="23658"/>
          <exon e_start="23567" e_stop="23527"/>
          <exon e_start="23386" e_stop="23315"/>
          <exon e_start="23230" e_stop="22720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGATAGCAAGACGTTGGTGGACTTCTTCACTGTAAGTCGATAACCTTTGAAGTCTAGTAAAAACTCTGCTACAAAAGGGGGAATGACATAGATTGTGTACTTGGCCTTCTTTCTATTTCAGGAAGAAGACTCCTTACATCCTGCCTTAACTGGAGTGATAGTGTAAGTTCTATGGTTGCTATTCTATTTGCATTTCTCGGTAACGGTGGGGTTTGGGAAGGGTAGAGTATACACAAATCTTAACCCTACCTCGTTATTGTGTTCAATGATTGTTGAGTTGATTCAAAAATCTATTTTTTTAGGTTTACGTCCACTCCTGACAAAGTAAATAACAAGTACTATCTCGGTCCTGCTCCACTAGAAGAGATGGCTAGGTGAGGATCATGGTTCTGTTATCTTATCTTTGCTCTGAGATTGAACGTTTTCAACTTATCTTAACGTTCCATATCCATTTTCAGCCAAATTGCTACTGCCTCTGGTCCCTGTGGAAATAACCAGGACTACATATTCAAAATGGAGAAGGCTTTACATGACATCAGTCACGAAGACGACTACATCACAGAGCTAGCAAATGAAGTGCGCAAAGTTCTTGGGATCACAGTGTCTGTCCCAATGGAGAAGAAGTTACTTAGTCCTTCCCAAACTCCACTCAAATCCCATATTTCCCCTGTGAAAATCCTCCCGTTGTCGGAAGCTATAGCTGCTGTTGCTGCAGACTCTTGACAAAGAAAATGATCTAGATATCTTTAGGAGGATGATGTATCCCTTGTGTTTTTTCCTTTTCCTCTAAACTTAGACTAGAATTTGGGGGTGGGGTGGGGGTAGGATAATGAGTTGAGTTGACATACTAACCAACCAGATGACTTTGTGTGGCCAGTTTGAACATGGATTCTTGAGTTATTATGAGCACTTTTTGATGAAATCTGATTAGTAGCTTACATGTTGAAAATACATGATCAATTTATTTTA</genome_strand>
        <mrna_strand>GTATGATAGCAAGACGTTGGTGGACTTCTTCACT..........................................................................................GAAGAAGACTCCTTACATCCTGCCTTAACTGGAGTGATAGT............................................................................................................................................GTTTACGTCCACTCCTGACAAAGTAAATAACAAGTACTATCTCGGTCCTGCTCCACTAGAAGAGATGGCTAG....................................................................................CCAAATTGCTACTGCCTCTGGTCCCTGTGGAAATAACCAGGACTACATATTCAAAATGGAGAAGGCTTTACATGACATCAGTCACGAAGACGACTACATCACAGAGCTAGCAAATGAAGTGCGCAAAGTTCTTGGGATCACAGTGTCTGTCCCAATGGAGAAGAAGTTACTTAGTCCTTCCCAAACTCCACTCAAATCCCATATTTCCCCTGTGAAAATCCTCCCGTTGTCGGAAGCTATAGCTGCTGTTGCTGCAGACTCTTGACAAAGAAAATGATCTAGATATCTTTAGGAGGATGATGTATCCCTTGTGTTTTTTCCTTTTCCTCTAAACTTAGACTAGAATTTGGGGGTGGGGTGGGGGTAGGATAATGAGTTGAGTTGACATACTAACCAACCAGATGACTTTGTGTGGCCAGTTTGAACATGGATTCTTGAGTTATTATGAGCACTTTTTGATGAAATCTGATTAGTAGCTTACATGTTGAAAATACATGATCAATTTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318697" ref_strand="+" ref_description="SGN-E318697 [cTOB-9-K4]">
      <seq>agagagagagtgtgtgagagagagaggctcacagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcggcttctgcttcacagaggcactccttgcttccgaggttatggtaggcgtaatggtgaaagaccaacgaagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36333" stop="38924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36628" g_stop="36712" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="149" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="207" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="316" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38624" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="373" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E318697" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36628" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAGAGAGTGTGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTG</genome_strand>
        <mrna_strand>AGAG-AGAGAGTGTGTGAGAGAGAGAGGCTCACAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGGCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGAGGTTATGGTAGGCGTAATGGTGAAAGACCAACGAAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745298" ref_strand="+" ref_description="SGN-E745298 [GI|47105780]">
      <seq>gagtgtgtgagagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattagcaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaaggttttggttgttttagtacttcctgaatgaaatcttcccaacttttattattttgttctttctcataagcataaatagtttgtctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36336" stop="39685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36636" g_stop="36712" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="142" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="200" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="309" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="582" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39376" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="1041" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1046" polyA_stop="1065"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E745298" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1041</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36636" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATTATTTTGTTCTTTCTCATAAGCATAAATAGTTT</genome_strand>
        <mrna_strand>GAGTGTGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGCAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGGTTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATTATTTTGTTCTTTCTCATAAGCATAAATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311308" ref_strand="+" ref_description="SGN-E311308 [cLEZ-18-E5]">
      <seq>agagagagagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccagaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36340" stop="38934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36639" g_stop="36712" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="138" r_length="64" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="195" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38634" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="371" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E311308" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36639" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATG</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAG-AGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCA-GAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341944" ref_strand="+" ref_description="SGN-E341944 [cTOF-9-H24]">
      <seq>agagagagagagagactcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36641" g_stop="36712" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="137" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="195" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="577" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39042" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="702" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E341944" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36641" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGAC</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGACTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315240" ref_strand="+" ref_description="SGN-E315240 [cTOA-24-I19]">
      <seq>agagagagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacttcacaaacaaaaagggttcgttttctaccagtacttccatttcgtttgcagttacattcttgaacgttgactctggtgctatggtgatacagggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36641" g_stop="36712" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="137" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="195" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38973" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="709" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E315240" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36641" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTT</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAAC-TTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321812" ref_strand="+" ref_description="SGN-E321812 [cTOB-25-P21]">
      <seq>agagagagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaagctgggtacaccattgactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36641" g_stop="36712" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="137" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="195" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="577" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="38972" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="632" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E321812" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36641" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCT</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAAGCTGGGTACACCATTGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709930" ref_strand="+" ref_description="SGN-E709930 [FA53CG02]">
      <seq>ccgatagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatanttgtgatatcttgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36344" stop="39527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36642" g_stop="36712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="136" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="576" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39227" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="886" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E709930" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36642" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTT</genome_strand>
        <mrna_strand>CCGATAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATANTTGTGATATCTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706373" ref_strand="+" ref_description="SGN-E706373 [FA29DB06]">
      <seq>gtgagagagagaggctcagagtgaaagtttcagaggttcatcgcctccattgagttcgatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccacaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcaggtctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccatgagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttaccgtctacgttgaaggaacagagagataggcgaagtgagagtttggctatgaagaggtctagactttctgctgcctccaagccatctattgctgcttaggatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36642" g_stop="36712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="136" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="576" r_length="273" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39202" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="861" r_length="285" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E706373" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36642" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAG</genome_strand>
        <mrna_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGGTTCATCGCCTCCATTGAGTTCGATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCACAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGGTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCATGAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTACCGTCTACGTTGAAGGAACAGAGAGATAGGCGAAGTGAGAGTTTGGCTATGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAGGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727956" ref_strand="+" ref_description="SGN-E727956 [LA16BA07]">
      <seq>gtcagatagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttnagatcatttcgaaagaggcaatcagtgatatctgtctgcttaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36642" g_stop="36712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="136" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="576" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39202" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="861" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E727956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36642" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAG</genome_strand>
        <mrna_strand>GTCAGATAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTNAGATCATTTCGAAAGAGGCAATCAGTGATATCTGTCTGCTTAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554205" ref_strand="+" ref_description="SGN-E554205 [cTSC-3-I8]">
      <seq>gtgagagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36642" g_stop="36712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="136" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="576" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39162" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="821" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E554205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36642" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCAT</genome_strand>
        <mrna_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204394" ref_strand="+" ref_description="SGN-E204394 [cLEC-13-J9]">
      <seq>gagagagagagaagctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36342" stop="39132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36642" g_stop="36712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="136" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38832" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="568" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E204394" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36642" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAA</genome_strand>
        <mrna_strand>GAGAGAGAGAGAAGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730714" ref_strand="+" ref_description="SGN-E730714 [LA24DH03]">
      <seq>cagtgagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaacagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgcttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36644" g_stop="36712" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="134" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="192" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="301" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="574" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39231" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="888" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E730714" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36644" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTA</genome_strand>
        <mrna_strand>CAGTGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAACAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293862" ref_strand="+" ref_description="SGN-E293862 [cLET-37-O12]">
      <seq>gagagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36344" stop="38526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36644" g_stop="36712" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="134" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38226" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="155" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E293862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36644" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAG</genome_strand>
        <mrna_strand>GAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701643" ref_strand="+" ref_description="SGN-E701643 [FA16CC01]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttnagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaggtcatatttgtgatatcttgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="300" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="573" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39228" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="883" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E701643" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTT</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTNAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTT-AAAAGGTCATATTTGTGATATCTTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348027" ref_strand="+" ref_description="SGN-E348027 [cTOF-31-O3]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="300" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="573" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39046" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="702" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E348027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATC</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344016" ref_strand="+" ref_description="SGN-E344016 [cTOF-12-B23]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="300" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="573" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39006" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="662" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E344016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAG</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317400" ref_strand="+" ref_description="SGN-E317400 [cTOA-28-O8]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctgggtacaccattgactcttcagaggaagagagcaagaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="300" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="573" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="38995" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="651" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E317400" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCG</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGGTACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322326" ref_strand="+" ref_description="SGN-E322326 [cTOB-24-G16]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtacgcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaagagggcttcccagattaggaagctcttcagccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="300" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="573" r_length="273" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="38923" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="579" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E322326" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAG</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTACGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAGAGGGCTTCCCAGATTAGGAAGCTCTTCAGCCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320109" ref_strand="+" ref_description="SGN-E320109 [cTOB-21-D19]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacgagaggatctcccaggaggttagcggagatgctttgggagaggagttgcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcaggcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccagaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="301" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38826" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="560" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E320109" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTT-CAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATT</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACGAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTGCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGGCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAGAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309202" ref_strand="+" ref_description="SGN-E309202 [cLEZ-12-C13]">
      <seq>agagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36345" stop="39093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36645" g_stop="36712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="133" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="191" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="300" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38793" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="526" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E309202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36645" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGT</genome_strand>
        <mrna_strand>AGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730535" ref_strand="+" ref_description="SGN-E730535 [LA24BG02]">
      <seq>gcgatagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagcatctattgcntgcttagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36346" stop="39506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36646" g_stop="36712" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="132" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="190" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="299" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="572" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39202" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="856" r_length="284" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E730535" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36646" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGC-TGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAG</genome_strand>
        <mrna_strand>GCGATAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAG-CATCTATTGCNTGCTT-AGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327092" ref_strand="+" ref_description="SGN-E327092 [cTOC-18-H24]">
      <seq>gagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36346" stop="39136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36646" g_stop="36712" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="132" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="190" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="299" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38836" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="568" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E327092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36646" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAA</genome_strand>
        <mrna_strand>GAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331995" ref_strand="+" ref_description="SGN-E331995 [cTOD-16-L17]">
      <seq>gtgccgaattcggcacgaggagagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36344" stop="39273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36647" g_stop="36712" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="86" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="151" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="209" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="318" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="591" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="38973" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="647" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E331995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36647" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTT</genome_strand>
        <mrna_strand>AGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318940" ref_strand="+" ref_description="SGN-E318940 [cTOB-11-J8]">
      <seq>agagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaagcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36347" stop="39102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36647" g_stop="36712" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="131" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="189" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="298" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38802" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="533" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E318940" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36647" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTA</genome_strand>
        <mrna_strand>AGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAA..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336362" ref_strand="+" ref_description="SGN-E336362 [cTOE-10-H8]">
      <seq>gagagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36348" stop="39044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36648" g_stop="36712" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="130" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="188" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="297" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38744" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="474" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E336362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36648" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAA</genome_strand>
        <mrna_strand>GAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344292" ref_strand="+" ref_description="SGN-E344292 [cTOF-16-E12]">
      <seq>agagaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaaagctttagcgtctaggttgaaggaaacagagagaaggcgaagtgagagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36349" stop="39402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36649" g_stop="36712" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="187" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="296" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="569" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39102" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="754" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E344292" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36649" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGG-AACAGAGAGAAAGGCGAAGTGAGAGTTTG</genome_strand>
        <mrna_strand>AGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAAGCTTTAGCGTCTAGGTTGAAGGAAACAGAGAG-AAGGCGAAGTGAGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339723" ref_strand="+" ref_description="SGN-E339723 [cTOE-16-K16]">
      <seq>gagaggctcatagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggctattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36350" stop="39077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36650" g_stop="36712" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="128" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="186" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="295" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38777" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="505" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E339723" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36650" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTG</genome_strand>
        <mrna_strand>GAGAGGCTCATAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGCTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335054" ref_strand="+" ref_description="SGN-E335054 [cTOE-9-J13]">
      <seq>agaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaaagaggttagcaaggctcctaagatccagaggnnctggtacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36351" stop="39340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36651" g_stop="36712" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="127" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="185" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="567" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39040" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="692" r_length="125" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E335054" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36651" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGG-AAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGG--CTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTG</genome_strand>
        <mrna_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGNNCTGGT-ACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310320" ref_strand="+" ref_description="SGN-E310320 [cTOA-1-G21]">
      <seq>agaggctcagagtgaaagtttcatagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36351" stop="39093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36651" g_stop="36712" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="127" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="185" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38793" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="520" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E310320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36651" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGT</genome_strand>
        <mrna_strand>AGAGGCTCAGAGTGAAAGTTTCATAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297850" ref_strand="+" ref_description="SGN-E297850 [cLET-38-J2]">
      <seq>agaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaacaacggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36351" stop="39078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36651" g_stop="36712" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="127" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="185" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38778" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="505" r_length="211" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E297850" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36651" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGG</genome_strand>
        <mrna_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAACAACGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296316" ref_strand="+" ref_description="SGN-E296316 [cLET-19-F7]">
      <seq>agaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccataagggcttccaagattagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36351" stop="39062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36651" g_stop="36712" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="127" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="185" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38762" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="489" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E296316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36651" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGA</genome_strand>
        <mrna_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCATAAGGGCTTCCAAGATTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313067" ref_strand="+" ref_description="SGN-E313067 [cTOA-14-H13]">
      <seq>agaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggttttccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtacgcgtaatggtgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36351" stop="38911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36651" g_stop="36712" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="127" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="185" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38611" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="338" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E313067" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36651" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGA</genome_strand>
        <mrna_strand>AGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTACGCGTAATGGTGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214994" ref_strand="+" ref_description="SGN-E214994 [cLEC-78-A5]">
      <seq>gaggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacnagaaagaagagattgccaagggctagtcggaagcagctgactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36352" stop="39346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36652" g_stop="36712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="126" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="184" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="293" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="566" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39046" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="695" r_length="129" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E214994" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36652" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAG-AAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATC</genome_strand>
        <mrna_strand>GAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACNAGAAAGAAGAG-ATTGCCAAGGGCTAGTCGGAAGCAGCTGACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307603" ref_strand="+" ref_description="SGN-E307603 [cLEY-16-G22]">
      <seq>aggctcagagtgaaagtttcagagtttcatcgcctccgttgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36353" stop="39129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36653" g_stop="36712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="125" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="183" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="292" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38829" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="554" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E307603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36653" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCAC</genome_strand>
        <mrna_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCGTTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319296" ref_strand="+" ref_description="SGN-E319296 [cTOB-16-B14]">
      <seq>aggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36353" stop="39043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36653" g_stop="36712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="125" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="183" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="292" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38743" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="468" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E319296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36653" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAA</genome_strand>
        <mrna_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339638" ref_strand="+" ref_description="SGN-E339638 [cTOE-16-N18]">
      <seq>aggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36353" stop="39033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36653" g_stop="36712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="125" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="183" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="292" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38733" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="458" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E339638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36653" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAG</genome_strand>
        <mrna_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319295" ref_strand="+" ref_description="SGN-E319295 [cTOB-16-B12]">
      <seq>aggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccatgaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaattggggtattgtgaagaagggagagaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36353" stop="38996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36653" g_stop="36712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="125" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="183" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="292" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38696" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="421" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E319295" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36653" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATC</genome_strand>
        <mrna_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCATGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTGGGGTATTGTGAAGAAGGGAGAGAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339879" ref_strand="+" ref_description="SGN-E339879 [cTOF-3-I14]">
      <seq>aggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactgtaaggctatcatattccttttgtgaaatgtaatgggatttgctgttttcggtgtaattttttttatgtttcattgttagatatctatgtgtggagaattaaactcaaattgtacaattctgctgttaatatcctttaaaagtatacagttatcgaagtttgtagtaagctgaatgatttgaggttttgttattataggatctgtgtgttatatacagtgtttttacatgaactttagtatggaataagctaagatgtattaccatagctgaacaagtatcaacagccacaaagtaatggtatatggagcttagagtgtatacagaccttactcctacctctgagaaggtagatatagtgttttcgatatggagaagagttgattgcaacaacttgaagataggtagatatcaataatgtaatttgcaatgctacttgaacaaacaagtaaatgacagtaatgtaatttgcaatgctagttgtgtattttgctattgattatctctcatttgtttctagtaaattttcgttgttatgattttgaagttggaaaaatttaatccattcaaccttatatatccatttacctcatatttagttgactggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36353" stop="37798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36653" g_stop="36712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="37498" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="735" r_length="675" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E339879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36653" e_stop="36712"/>
          <exon e_start="36824" e_stop="37498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATT</genome_strand>
        <mrna_strand>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726299" ref_strand="+" ref_description="SGN-E726299 [LA11BF12]">
      <seq>ggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgctttagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgcttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36354" stop="39531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36654" g_stop="36712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="124" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="182" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="291" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="564" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39231" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="878" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E726299" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36654" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTA</genome_strand>
        <mrna_strand>GGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTTAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206854" ref_strand="+" ref_description="SGN-E206854 [cLEC-33-I14]">
      <seq>ggctcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36354" stop="39044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36654" g_stop="36712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="124" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="182" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="291" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38744" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="468" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E206854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36654" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAA</genome_strand>
        <mrna_strand>GGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727994" ref_strand="+" ref_description="SGN-E727994 [LA16BE07]">
      <seq>ctcattgtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36356" stop="39379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36656" g_stop="36712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="122" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="180" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="289" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="562" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39079" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="724" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E727994" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36656" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGA</genome_strand>
        <mrna_strand>CTCATTGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307135" ref_strand="+" ref_description="SGN-E307135 [cLEY-15-G13]">
      <seq>tcagagtgaaagtttcagagtttcatcgcctgcattgagtgcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36357" stop="39115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36657" g_stop="36712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="121" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="179" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="288" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38815" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="536" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E307135" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36657" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTAT</genome_strand>
        <mrna_strand>TCAGAGTGAAAGTTTCAGAGTTTCATCGCCTGCATTGAGTGCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313468" ref_strand="+" ref_description="SGN-E313468 [cTOA-13-H21]">
      <seq>tcagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36357" stop="38781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36657" g_stop="36712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="121" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="179" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="288" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38577" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="298" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E313468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36657" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTG</genome_strand>
        <mrna_strand>TCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264990" ref_strand="+" ref_description="SGN-E264990 [cLEI-10-H15]">
      <seq>cagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36358" stop="39141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36658" g_stop="36712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="120" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="178" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="287" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="560" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="38922" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="565" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E264990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36658" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAA</genome_strand>
        <mrna_strand>CAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282040" ref_strand="+" ref_description="SGN-E282040 [cLES-2-N21]">
      <seq>cagagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36358" stop="39027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36658" g_stop="36712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="120" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="178" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="287" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38727" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="447" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E282040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36658" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAG</genome_strand>
        <mrna_strand>CAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337740" ref_strand="+" ref_description="SGN-E337740 [cTOE-17-P2]">
      <seq>agagtgaaagtttcagagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36359" stop="39141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36659" g_stop="36712" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="119" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="177" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="286" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="559" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="38923" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="565" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E337740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36659" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAG</genome_strand>
        <mrna_strand>AGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696354" ref_strand="-" ref_description="SGN-E696354 [LH_Ea08O16](-)">
      <seq>gtgaagtttcagagtttcatcgcctccattgagttccattgaagatgaagttcaacattgcaaacccgactactgggcgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaggatgatgatgtcaggaagtatgtcaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaatcgccaaggccaagtcggaagcagctgactatcagaagcttttagcttctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgcttttgttaatgttctgagatgatgagttttaaagtagtgtatcgttttactatgtgatctttctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36362" stop="39591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36662" g_stop="36712" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="115" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="173" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="282" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="555" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39291" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="929" r_length="374" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E696354" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36662" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATC</genome_strand>
        <mrna_strand>GTGAA-GTTTCAGAGTTTCATCGCCTCCATTGAGTTCCATTGAAGATGAAG...............................................................................................................TTCAACATTGCAAACCCGACTACTGGGCGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAGGATGATGATGTCAGGAAGTATGTCAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATCGCCAAGGCCAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCTTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTGTTAATGTTCTGAGATGATGAGTTTTAAAGTAGTGTATCGTTTTACTATGTGATCTTTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259313" ref_strand="+" ref_description="SGN-E259313 [cLEG-43-G23]">
      <seq>gaaagtttcagagtttcatcgcctttattgagttcaatcgaagatgaagttcaacgttgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgagttcgtcttctgcttcacagaggcactccttgcttccgtggttatggcaggcgtaatggtgaaagacgaaggaagtctgtccgaggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggctctcaagattaggaagctcttcaaccttggaaaagatgatgatgtcatgaagtatgttaacacctatcgccgaacattcacaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36364" stop="39136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36664" g_stop="36712" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="114" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="172" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="281" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38836" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="550" r_length="269" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E259313" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36664" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAA</genome_strand>
        <mrna_strand>GAAAGTTTCAGAGTTTCATCGCCTTTATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACGTTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGAGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGAGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTCTCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCATGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706836" ref_strand="+" ref_description="SGN-E706836 [FA31AC08]">
      <seq>gagtttcatcgcctccattgagttcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctcccagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaggtcatatttgtgataccttgctttttttatggtctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatccaagattttggtggttttagaccttcctgatgaaatcttccaacttttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36374" stop="39645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36674" g_stop="36712" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="104" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="162" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="271" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="544" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39344" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="967" r_length="423" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="968" polyA_stop="978"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E706836" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>971</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36674" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</genome_strand>
        <mrna_strand>GAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCCAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTT-AAAAGGTCATATTTGTGATACCTTGCTTTTTTT-ATGGTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCCAAGATTTTGGTGGTTTTAGACCTTCCTG-ATGAAATCTT-CCAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307668" ref_strand="+" ref_description="SGN-E307668 [cLEY-16-H10]">
      <seq>tttcatcgcctccattgaggggaatcttgggggaagtttaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccataaactccgagctttctttgacaagaggatctcccaggaggatagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgttacaagcaaggattcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36520" stop="38761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36677" g_stop="36712" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="101" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="159" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38461" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="260" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E307668" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36677" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCT</genome_strand>
        <mrna_strand>TTTCATCGCCTCCATTGAGGGGAATCTTGGGGGAAG...............................................................................................................TTTAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCATAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGATAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTTACAAGCAAGGATTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710652" ref_strand="+" ref_description="SGN-E710652 [FA56AD04]">
      <seq>tcaatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggctatggtaggccgtaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36397" stop="38904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36697" g_stop="36712" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="81" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="139" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="248" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38604" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="286" r_length="38" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E710652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36697" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGG-CGTAATGG</genome_strand>
        <mrna_strand>TCAATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGCTATGGTAGGCCGTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335234" ref_strand="+" ref_description="SGN-E335234 [cTOE-1-K7]">
      <seq>aatcgaagatgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaagaggttagcggagatgctttgggagaggagttcaagggatacgttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36519" stop="38681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36699" g_stop="36712" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="79" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="137" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.884" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38381" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="158" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E335234" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36699" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAAGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTC</genome_strand>
        <mrna_strand>AATCGAAGATGAAG...............................................................................................................TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAAGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694565" ref_strand="-" ref_description="SGN-E694565 [LH_Ea04E03](-)">
      <seq>agatgaagttcaacattgcaaacccgactactgcctgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaggatgatgatgtcaggaagtatgtcaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaggaagagaatcgccaaggccaagtcggaagcagctgactatcagaagcttttagcttctacgttgaaggaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36519" stop="39379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36705" g_stop="36712" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36824" g_stop="36888" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="73" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="131" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="240" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="513" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38918" g_stop="39079" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="675" r_length="162" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E694565" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694565" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36705" e_stop="36712"/>
          <exon e_start="36824" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAAGGTACGTTAATTAACCCTAAAATCTCCAGTTTCTATCAATTTTTGTAGATTTTTACGAATTTTTTAGTGAATTTGCTTAACTTATTGTGATTTTGTTGTTTGTTTTTTGCAGTTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGA</genome_strand>
        <mrna_strand>AGATGAAG...............................................................................................................TTCAACATTGCAAACCCGACTACTGCCTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAGGATGATGATGTCAGGAAGTATGTCAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAGGAAGAGAATCGCCAAGGCCAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCTTCTACGTTGAAGGAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692514" ref_strand="-" ref_description="SGN-E692514 [LH_Ea08O16]">
      <seq>ttgcaaacccgattactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaggatgatgatgtcaggaagtatgtcaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaatcgccaaggccaagtcggaagcagctgactatcagaagcttttagcttctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgcttttgttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttgctgaatgaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36531" stop="39630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36831" g_stop="36888" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="116" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="225" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="498" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38918" g_stop="39330" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="911" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E692514" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692514" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36831" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCT</genome_strand>
        <mrna_strand>TTGCAAACCCGATTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAGGATGATGATGTCAGGAAGTATGTCAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATCGCCAAGGCCAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCTTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTGTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTGCTGAATGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273509" ref_strand="+" ref_description="SGN-E273509 [cLEN-6-A11]">
      <seq>gcgaacccgactactgggtgccagaagaagctcgagatcgatgatgaccagaaactccgagctttctttgacaagaggatctcccaggaggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcacggagtgttaactacaggccgagttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaaccttgaatgagaggacccagaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacagacaaaaaggggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="36533" stop="39141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36833" g_stop="36888" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38206" g_stop="38263" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="114" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="223" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="496" r_length="273" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38918" g_stop="38923" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="502" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E273509" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36833" e_stop="36888"/>
          <exon e_start="38206" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="38923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATTTCAGATTTCTCGTTAGAAGTATTCTTTATTTGAGATAATTAGAAACGGATAATCTGTTATAATTTACCTTTCAATTGAAAAAAATGGACTGATCATCTCTATAGCACTATAACATCATAACATGACAATAGAACTTATAATATAGAATATATTAGTGTACAAATAGACAATGAAGTGATTATTTTCTCTTATATTATTTTCCAACACTAGTCAATGAACCAAATTTGAGTTCTTAATTATAAAAAACCAATCTTTGTGCTCTTTTTGATCTTTGTCTTGTTAAAACTTTTGTTGATATTTTAATTTGCGAAAAAATGTTGATGGCATCTCTAATTATTTTTGCTACTGTTAATAGAGACTACTGCATATACATATGCATGCTAGTGTTTGGTTCACAAGTTCTCCACCTTTATCTGTTATATCTAACAAGCCCACTATAGTATTCAGTTCCATGCATATGATAAGTGAGAAAATTCTGGATATTATTTCTTGATGAAAAGATAAGATATTTCTTTCATTTATGCTCTTCACTCGACTGCACATTTGTTTTTGAATGTTGCTTAGTTTGATGTATAGTTGTCACTTTCATATTTATTTGGCAGTCTCGATATTTCATTTGCACATTGAATGTTGAATTATGATTGACTGTCAAGTAAATGTGGATACGGAGGTACTGTTGGTAATGATACTTAATTCTTGCTATGCAGCCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAG</genome_strand>
        <mrna_strand>GCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCACGGAGTGTTAACTACAGGCCGAGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTTGAATGAGAGGACCCAGAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAGACAAAAAGG.............................................................................GGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325038" ref_strand="+" ref_description="SGN-E325038 [cTOC-13-B17]">
      <seq>agctttctttgacaaaaggatctcccaggaagttagcggagattctttgggtgaggagttcaagggttacgttttcaagataatgggaggatgtgacaagcaagggttccctatgaaacagggagtgttaactcctggccgtgttcgccttttgctccacagaggtactccttgcttccgtggttatggtaggcgaaatggagagcgcagaaagaagtctgtccgtggatgcattgtcagccctgatctttctgttttgaacctggttattgttaagaagggggagaatgatctgcctggactgaccgacactgaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38059" stop="39023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38209" g_stop="38263" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="164" r_length="109" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38568" g_stop="38723" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="320" r_length="156" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E325038" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38209" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAAC</genome_strand>
        <mrna_strand>AGCTTTCTTTGACAAAAGGATCTCCCAGGAAGTTAGCGGAGATTCTTTGGGTGAG.................................................................................................GAGTTCAAGGGTTACGTTTTCAAGATAATGGGAGGATGTGACAAGCAAGGGTTCCCTATGAAACAGGGAGTGTTAACTCCTGGCCGTGTTCGCCTTTTGCTCCACAGAG..................................................................................................GTACTCCTTGCTTCCGTGGTTATGGTAGGCGAAATGGAGAGCGCAGAAAGAAGTCTGTCCGTGGATGCATTGTCAGCCCTGATCTTTCTGTTTTGAACCTGGTTATTGTTAAGAAGGGGGAGAATGATCTGCCTGGACTGACCGACACTGAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690725" ref_strand="-" ref_description="SGN-E690725 [LH_Ea04E03]">
      <seq>aggttagcggagatgctttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaggatgatgatgtcaggaagtatgtcaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaatcgccaaggccaagtcggaagcagctgactatcagaagcttttagcttctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgcttttgttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttgctgaatgaagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="37938" stop="39630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38238" g_stop="38263" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38361" g_stop="38469" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="135" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="408" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38918" g_stop="39331" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="822" r_length="414" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E690725" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38238" e_stop="38263"/>
          <exon e_start="38361" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTAGCGGAGATGCTTTGGGAGAGGTAAGTCTAATGTCCACTTTGTGACTCGGTGGTAATTTTGCCATTGCTACCAAATTCATTTCAGAGATTTACTAATGTTGCGTCTCCCAATTGACAGGAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTT</genome_strand>
        <mrna_strand>AGGTTAGCGGAGATGCTTTGGGAGAG.................................................................................................GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAGGATGATGATGTCAGGAAGTATGTCAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATCGCCAAGGCCAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCTTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTGTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTGCTGAATGAAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353862" ref_strand="+" ref_description="SGN-E353862 [cTOS-10-N14]">
      <seq>caaggtttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagaggcactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttnagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgcttttttttatggtctgagatgatgagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38106" stop="39553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38406" g_stop="38469" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38568" g_stop="38840" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="337" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38918" g_stop="39253" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="673" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E353862" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38406" e_stop="38469"/>
          <exon e_start="38568" e_stop="38840"/>
          <exon e_start="38918" e_stop="39253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAGGTATCTGTTGTGAAGTGCTTAATTTCAGATATGTTTTTTAATTATTTTCTGTGTATAGCTGTTGCTATTTAGTATCTAATTTGATGCACATTAAACAGGCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTT</genome_strand>
        <mrna_strand>CAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG..................................................................................................GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTNAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTTATGGTCTGAGATGATGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227103" ref_strand="+" ref_description="SGN-E227103 [cLED-1-B16]">
      <seq>taatggtgaaagacgaaggaagtctgtccgtggatgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaagctaagtcggaagcagctgactatcagaagcttttagcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38299" stop="39363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38599" g_stop="38840" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39063" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="388" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E227103" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38599" e_stop="38840"/>
          <exon e_start="38918" e_stop="39063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCT</genome_strand>
        <mrna_strand>TAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAAGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200527" ref_strand="+" ref_description="SGN-E200527 [cLEB-8-J13]">
      <seq>gcacgaggcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38331" stop="39402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38627" g_stop="38840" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39102" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="399" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E200527" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38627" e_stop="38840"/>
          <exon e_start="38918" e_stop="39102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTG</genome_strand>
        <mrna_strand>GCACGAGGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207521" ref_strand="+" ref_description="SGN-E207521 [cLEC-36-F4]">
      <seq>tgcattgtcagtcctgacctttcagttctgaatttggttattgtgaagaagggagagaatgatcttcctggactgacagacactgaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgctttactatgtgatctttctgatcaaagattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38333" stop="39602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38633" g_stop="38840" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39302" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="593" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E207521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38633" e_stop="38840"/>
          <exon e_start="38918" e_stop="39302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGG</genome_strand>
        <mrna_strand>TGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGCTTTACTATGTGATCTTTCTGATCAAAGATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283490" ref_strand="+" ref_description="SGN-E283490 [cLER-12-P14]">
      <seq>actgaaaaacctataatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggtcgttttctaccagtacttccatttcgtttgcagaatacattcttgaacgttgactctggtgctatggtgatacagggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaacttagtgtatcgttttactatgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38414" stop="39582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38714" g_stop="39282" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E283490" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38714" e_stop="39282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAG-TTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATC</genome_strand>
        <mrna_strand>ACTGAAAAACCTATAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGGTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGAATACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAACTTAGTGTATCGTTTTACTATGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351503" ref_strand="-" ref_description="SGN-E351503 [cTOS-12-I21]">
      <seq>gaaaaacctagaatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttcctgaatgaaatcttcccaacttttattaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38417" stop="39645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38717" g_stop="38840" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39344" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="551" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="571"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E351503" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351503" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38717" e_stop="38840"/>
          <exon e_start="38918" e_stop="39344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</genome_strand>
        <mrna_strand>GAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351757" ref_strand="+" ref_description="SGN-E351757 [cTOS-8-D24]">
      <seq>aatgagaggacccaaaagggcttccaagattaggaagctcttcaaccttggaaaagatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttcctgaatgaaatcttcccaacttttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38428" stop="39645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38728" g_stop="38840" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39344" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="540" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="557"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E351757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38728" e_stop="38840"/>
          <exon e_start="38918" e_stop="39344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</genome_strand>
        <mrna_strand>AATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286652" ref_strand="-" ref_description="SGN-E286652 [cLES-12-L17]">
      <seq>agatgatgatgtcaggaagtatgttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaccagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttcctgaatgaaatcttcccaacttttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38482" stop="39645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38782" g_stop="38840" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39344" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="486" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="497"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E286652" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38782" e_stop="38840"/>
          <exon e_start="38918" e_stop="39344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</genome_strand>
        <mrna_strand>AGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGACCAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714076" ref_strand="+" ref_description="SGN-E714076 [FB10BG11]">
      <seq>gttaacacctatcgccgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttcctgaatgaaatcttcccaacttttattanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38504" stop="39645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38804" g_stop="38840" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39344" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="464" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="487"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E714076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38804" e_stop="38840"/>
          <exon e_start="38918" e_stop="39344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</genome_strand>
        <mrna_strand>GTTAACACCTATCGCCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203221" ref_strand="+" ref_description="SGN-E203221 [cLEB-3-P2](-)">
      <seq>ggcacgagcgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38519" stop="39575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38811" g_stop="38840" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.767"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39261" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="374" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="407"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E203221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38811" e_stop="38840"/>
          <exon e_start="38918" e_stop="39261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGT</genome_strand>
        <mrna_strand>GGCACGAGCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277284" ref_strand="-" ref_description="SGN-E277284 [cLEL-3-B16](-)">
      <seq>gcacgagcgaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatgcagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcggtttactaaaaaaaaaaagagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38519" stop="39575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38812" g_stop="38840" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.793"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39261" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="373" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="399"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E277284" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277284" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38812" e_stop="38840"/>
          <exon e_start="38918" e_stop="39261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGT</genome_strand>
        <mrna_strand>GCACGAGCGAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATGCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203220" ref_strand="+" ref_description="SGN-E203220 [cLEB-3-P2]">
      <seq>gcacgagcgaacatccacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38612" stop="39575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38812" g_stop="38840" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.759"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39261" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="373" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="407"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E203220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38812" e_stop="38840"/>
          <exon e_start="38918" e_stop="39261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGT</genome_strand>
        <mrna_strand>GCACGAGCGAACATCCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284637" ref_strand="-" ref_description="SGN-E284637 [cLES-3-H24]">
      <seq>gaacattcacaaacaaaaaggggaaagaggttagcaaggctcctaagatccagaggctggtaacaccattgactcttcagaggaagagagcaagaatcgctgacaagaagaagagaattgccaaggctaagtcggaagcagctgactatcagaagcttttagcgtctaggttgaaggaacagagagaaaggcgaagtgagagtttggctaagaagaggtctagactttctgctgcctccaagccatctattgctgcttaagatcatttcgaaagaagcaatcagtgatatctgtctgcttaaaaaggtcatatttgtgatatcttgctttttttaatgttctgagatgatgagttttaagttagtgtatcgttttactatgtgatctttctgatcaaagattttggttgttttagtacttcctgaatgaaatcttcccaacttttattatttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="38520" stop="39648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38820" g_stop="38840" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38918" g_stop="39349" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="453" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E284637" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284637" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38820" e_stop="38840"/>
          <exon e_start="38918" e_stop="39349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATTATTTT</genome_strand>
        <mrna_strand>GAACATTCACAAACAAAAAGG.............................................................................GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267668" ref_strand="+" ref_description="SGN-E267668 [cLEI-12-I15]">
      <seq>tcgagtttttttttttttttttgttaataaaagttgggaagatttcattcaggaagtactaaaacaaccaaaatctttgatcagaaagatcacatagtaaaacgatacactaacttaaaactcatcatctcagaacattaaaaaaagcaagatatcacaaatatgacctttttaagcagacagatatcactgattgcttctttcgaaatgatcttaagcagcaatagatggcttggaggcagcagaaagtctagacctcttcttagccaaactctcacttcgcctttctctctgttccttcaacctagacgctaaaagcttctgatagtcagctgcttccgacttagccttggcaattctcttcttcttgtcagcgattcttgctctcttcctctgaagagtcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="39645" stop="38663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39645" g_stop="39638" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="25" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39637" i_stop="39345" i_length="293">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39344" g_stop="38963" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="407" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="17" polyA_stop="5"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E267668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39645" e_stop="39638"/>
          <exon e_start="39344" e_stop="38963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTGTTATATCTTTGTACTTCTGTCACTTCTTTTGCTGCACTACTTTGAACTGTCTTTCCTTCAGACCTTAGAAACAACCTCTCTACAATCCGAGGTAGGGAGAAGATGATCCACGTATGTTGTTGATAAACGAACCTCAACAATGGACGAGGAATATACAACATAGCAATCCCATGAGTGTAGTCTAGAGATGGTAGACCGGAGGTGGTTTCTAATAGAAACTCAGCTACTAAATGTAATATGTGTAATATGCAAAGTTTTAAAACAAACTATTTATGCTTATGAGAAAGAACAAAATAATAAAAGTTGGGAAGATTTCATTCAGGAAGTACTAAAACAACCAAAATCTTTGATCAGAAAGATCACATAGTAAAACGATACACTAACTTAAAACTCATCATCTCAGAACATTAAAAAAAGCAAGATATCACAAATATGACCTTTTTAAGCAGACAGATATCACTGATTGCTTCTTTCGAAATGATCTTAAGCAGCAATAGATGGCTTGGAGGCAGCAGAAAGTCTAGACCTCTTCTTAGCCAAACTCTCACTTCGCCTTTCTCTCTGTTCCTTCAACCTAGACGCTAAAAGCTTCTGATAGTCAGCTGCTTCCGACTTAGCCTTGGCAATTCTCTTCTTCTTGTCAGCGATTCTTGCTCTCTTCCTCTGAAGAGTCAATG</genome_strand>
        <mrna_strand>TTTTTGTT.....................................................................................................................................................................................................................................................................................................AATAAAAGTTGGGAAGATTTCATTCAGGAAGTACTAAAACAACCAAAATCTTTGATCAGAAAGATCACATAGTAAAACGATACACTAACTTAAAACTCATCATCTCAGAACATTAAAAAAAGCAAGATATCACAAATATGACCTTTTTAAGCAGACAGATATCACTGATTGCTTCTTTCGAAATGATCTTAAGCAGCAATAGATGGCTTGGAGGCAGCAGAAAGTCTAGACCTCTTCTTAGCCAAACTCTCACTTCGCCTTTCTCTCTGTTCCTTCAACCTAGACGCTAAAAGCTTCTGATAGTCAGCTGCTTCCGACTTAGCCTTGGCAATTCTCTTCTTCTTGTCAGCGATTCTTGCTCTCTTCCTCTGAAGAGTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341659" ref_strand="+" ref_description="SGN-E341659 [cTOE-23-F4]">
      <seq>ttcaatcagtaatttctctaatgaatttcaaagttcacaacaaatggattggctcagggttcaagattctctaaaggggaaattgattactgaagatgacttcaaatggagattgcccacaagagaaaaagaaggaagttgtgaaatattgaagtatgttggtggggttgacttaagtttttcaaaagatgattcatctattgcctgtggcactcttgttgtgttggacttgacgactcagaaagttgtttatgaagattcgtctattgttaggcttcacattccatatcttcctggcttccttgctttcagagaggctcctgtgcttctggaacttttggataaaatgaagaacaatgctcattgtttctacccgcagctactaatggttgatggcaatggattgcttcatcctcgaggttttggtttggcttgtcatattggtgtcttagctgatcttcctactgttggggtgggaaagaatttacaccacgttgatggtcttacacaatctacggtaagagaactccttcaagcagcagactctcccgaacatatcttaccgctaattggggactctggatgtatctggggagcggcaatgcgatcatctgagggctctttgaagcccatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="45394" stop="49901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45694" g_stop="45745" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45746" i_stop="46574" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46575" g_stop="46838" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="316" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46983" g_stop="47045" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="379" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47046" i_stop="47677" i_length="632">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47678" g_stop="47717" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="419" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47718" i_stop="48712" i_length="995">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48713" g_stop="48777" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="484" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49253" g_stop="49366" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="598" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195">
            <donor d_prob="0.444" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49562" g_stop="49601" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="638" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E341659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45694" e_stop="45745"/>
          <exon e_start="46575" e_stop="46838"/>
          <exon e_start="46983" e_stop="47045"/>
          <exon e_start="47678" e_stop="47717"/>
          <exon e_start="48713" e_stop="48777"/>
          <exon e_start="49253" e_stop="49366"/>
          <exon e_start="49562" e_stop="49601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGTAATTTCTCTAATGAATTTCAAAGTTCACAACAAATGGATTGGGTAAATATCAAGAAAAATTCAATCCCTCTTTTACTTTTATGCTTCAATAGTTATCTGCCCTTTGCTATTTTGTTATCGTATTATTCTTGCAATCCTGGCTTTTAAGTCGAGAATCTATTAAAAAACAACCTTGTTATATAAAAAGGTAGAGATAAATTTTGTGTACGTCTGATTTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCTGTAGTCATTTTTGCACATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCAGTAGTCATTTTTGCAAATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTATAGATTTTTGCTTCATTAGTAATTTTACACATGTAAAGTTTGATTTACAAGTAGTTTGCTGTTTTAATCAGCTTAGAATTCAAGATTCTCCAATGGGGTAACTGATTATTGAAGATGTAATGTTTTTTGCTTCAGTAGTAATTTATGTACATGTAAAGGTTATCTTTACAAGTTGGATACTTTTTTACTCAGCTCAGGGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAGGTCTTATACATATTCTCTATATTATCCGTTGCTCGCAATGTGTTTTGACTTATCGCCTTTGTTGTTTGTCTAAAAAGGAGGGATCATGTCTATATGTTTTGAATAATGTAAACTGATATCTGTAATATTGAACTGGTTCTTTAGGCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAGGTAAATGTTGATAACTTTCCTCCTTCGTTGCTCCCCTCTCCCTACTTATTTTCAGTCTACAAATGGTGAAACATTGATCAAGAGTGTATACCATGTAGTAAAAGAACTGTAGAGCTGCAATCGTCTCCTGGAAAGACATTGTATAGTATTCGGCAGGTTAGACCAACTCTACACCTTCCGCATACCATCAGTATTCTGCTTCACACTGAACCCGTTCCCGATTATAGGCAGGAAGTTTGACCTCATCTGCTAACTCAAATAGATGAAGCACATTGTATTACTCTATCTACTATGATGTACTCAAGAGGGCAAAAGGCACAATTTTGGTAAAACAATATAAGAATAATGTTGAAGTTGTACAAACGGAAGCCTCATTTGGCAGTGTAACAGGACCAAAACATCTAAGAGTTAGTGGTTGTATTTAGTTTTACGGGCATTTAAGTGGAACTTTGACTTCCAATATAGATGCCGCTAAGGGTTTATGTTACAAAACTTGCTCTCACTGGTAATTCTAATTCTTCCCCCTTCCCTTTTCGCTTATATCGAACCTGTAGTAGGAACCAACAGACATTATTGAGCTGGACAACGTAAAATCTAATACCTGACATCGATTTTAACCTTCGTGTTGACAGCTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAGGCAAGTTTTGTTTCTATTTGAAGCTGGAAAAAAAGAGAATTCCTAAGTCTAGCAGATTGTTTAGTAGATACCAACATCCAACATCATGATCATATTCTCCTAACTTGTGTCTGTGTCGAAGTAATTACTAGTAACTTTTATTCCCAAAGCTTATTCTATGAAAAATGTATATTAGTGTAAATAGCTTAGGTAATCCCCCAGACACGAAAACTGAGTTTTCCAATCTCTTGATACCATTTTAGCTTTTTATATCCTCTATAGCGTATATCAGCTAGTTGGTTCTCGGATATTGACTGTAAATGTTAATTCTCTTTGGATATTTCTCTATTTTATATCTCTCTTCTTATATATTTGCTGCTAATGCTTTTTCCGAACAGACGAGATCTGAAATGTAATTCGTTCTCAGCTGACGTAATACTGAAGCTCCATTAATCATTCTCTAAGACTTTCCACTACATGTCGAGATCAATGTGCTTAATCTATGACACTAAGTTGACACTGTCATATTTGTGTTATCAGAAGGAATTGCTTTCTGCTAATCGGGATCTTTTTTATCCCGATAATAATTTGACTGGATTAAAGAACACAATCATTTGTTGGTTCTAAAGTTGGTGCTATGAGTAGTTTCACAACCTTCCAAATCAAGTTAACAAGGGTCTGAACTGTTTGAATGTGAAGTTCTGCCATGGCTTTGTAAAGATATTTCAGCTTTAATCATCCCCTTGATATAACTTACGATTAAGTTCCTCTTAGATGCTCTTTGGGAAAACTGTTCATGAAAACTAGAAAGTTTGGCTTCACTGACTAGTTTTATCTGTATCGCTTGTTGAATCACTGACTGTTCAACTCGAGAGAGTTTTTTATATATGATAGCATATGGACATGGGTAATCTTTATCAATTTAAACTCGTGATTGAGTATGCAATACGAATTCCTCCTGCACTATTTCACACTTCTTTTTGCTAAAAACTCTACAACCACATTATGTTCTGCAGGTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAATGTAAGTCTAAACTTCTTTATCCACCTCTTAAAAATCTAGGTAGACTCAATCGAAACGTGCTTTTGTTTGTTCGCTCTTAGTGAAGAAACAAAAAGCGAACCTAATGTGGGAAGGAAATATAGAACGTTGTTTGATCTTTCTCGTTGAATCTCTAACGACAACATACCCAATGTAATCCGTCAAGGGGGGTCTACGGTTGGTGGAGTGTACACAAACCTTACCCTTACCTCGTGGAGGTAGAGAGGCTGTTTCTGAAAGATTGGACACTACTCTGTGCAGGATACTGAACTGGCGAACATCTCCTAGTATTCTGCCTGTCCTGCTAACGCGGGATGCTTTGTGCATTTGACTTGCCACTTTTTCTCTACTTATACATAGCCTTAGCTCGATATTGAATTATTTCTGTATGACTAGTTTTGCAACAGTTGTGAACTGGTTTATGAACATTCTGTCTTTCTGTCTTTTCTTTTTCTAGTTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCGGTACGACAGTCTTTCTTTATCCTTGAAATATGTTAACAACAACGACTATCCCTCAGTCTCAAACAAGTTGGCCAAATTATTCCAGAAATGAAAAATGAGTTGTAACTTTGTGTTGGCTCGATTACGTGTGAATTTTACTGTAGTATCTATTCTATTCCATCACAAGCTTCGTATGTTGATTAAATCCTCTTGCAGGCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTA</genome_strand>
        <mrna_strand>TTCAATCAGTAATTTCTCTAATGAATTTCAAAGTTCACAACAAATGGATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG................................................................................................................................................GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG...................................................................................................................................................................................................GCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539948" ref_strand="+" ref_description="SGN-E539948 [TUS-59-P13]">
      <seq>tttccgaatcatactagctacgttgttgttgtaaagtttgaatctttatgtattaggtgggtactgttttaatcagcttaggattcaaggttctgtaatgggtcagctgattactgaagatgtgaagtttttatctttagtagaatttgtttgctcatgtaaagtttgaatctttacaagttgggctttttgaatcagcttagagttcaagattctctaatggggcaactgattactgaaaatggttcaagattctctaaaggggaaattgattactgaagatgacttcaaatggagattgcccacaagagaaaaagaaggaagttgtgaaatattgaagtatgttggtggggttgacttaagtttttcaaaagatgattcatctattgcctgtggcactcttgttgtgttggacttgacgactcagaaagttgtttatgaagattcgtctattgttaggcttcacattccatatcttcctggcttccttgctttcagagaggctcctgtgcttctggaacttttggataaaatgaagaacaatgctcattgtttctacccgcaggttttggtttggcttgtcatattggtgtcttagctgatcttcctactgttggggtgggaaagaatttacaccacgttgatggtcttacacaatctacggtaagagaactccttcaagcagcagactctccccgacatatcttaccgctaattggggactctggatgtatctggggagcggcaatgcgatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="45619" stop="49669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45919" g_stop="46161" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46162" i_stop="46579" i_length="418">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46580" g_stop="46838" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="502" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46983" g_stop="47045" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="565" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47046" i_stop="48712" i_length="1667">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48713" g_stop="48777" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="630" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49253" g_stop="49366" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="744" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195">
            <donor d_prob="0.444" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49562" g_stop="49576" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="759" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E539948" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45919" e_stop="46161"/>
          <exon e_start="46580" e_stop="46838"/>
          <exon e_start="46983" e_stop="47045"/>
          <exon e_start="48713" e_stop="48777"/>
          <exon e_start="49253" e_stop="49366"/>
          <exon e_start="49562" e_stop="49576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCTGTAGTCATTTTTGCACATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCAGTAGTCATTTTTGCAAATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTATAGATTTTTGCTTCATTAGTAATTTTACACATGTAAAGTTTGATTTACAAGTAGTTTGCTGTTTTAATCAGCTTAGAATTCAAGATTCTCCAATGGGGTAACTGATTATTGAAGATGTAATGTTTTTTGCTTCAGTAGTAATTTATGTACATGTAAAGGTTATCTTTACAAGTTGGATACTTTTTTACTCAGCTCAGGGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAGGTCTTATACATATTCTCTATATTATCCGTTGCTCGCAATGTGTTTTGACTTATCGCCTTTGTTGTTTGTCTAAAAAGGAGGGATCATGTCTATATGTTTTGAATAATGTAAACTGATATCTGTAATATTGAACTGGTTCTTTAGGCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAGGTAAATGTTGATAACTTTCCTCCTTCGTTGCTCCCCTCTCCCTACTTATTTTCAGTCTACAAATGGTGAAACATTGATCAAGAGTGTATACCATGTAGTAAAAGAACTGTAGAGCTGCAATCGTCTCCTGGAAAGACATTGTATAGTATTCGGCAGGTTAGACCAACTCTACACCTTCCGCATACCATCAGTATTCTGCTTCACACTGAACCCGTTCCCGATTATAGGCAGGAAGTTTGACCTCATCTGCTAACTCAAATAGATGAAGCACATTGTATTACTCTATCTACTATGATGTACTCAAGAGGGCAAAAGGCACAATTTTGGTAAAACAATATAAGAATAATGTTGAAGTTGTACAAACGGAAGCCTCATTTGGCAGTGTAACAGGACCAAAACATCTAAGAGTTAGTGGTTGTATTTAGTTTTACGGGCATTTAAGTGGAACTTTGACTTCCAATATAGATGCCGCTAAGGGTTTATGTTACAAAACTTGCTCTCACTGGTAATTCTAATTCTTCCCCCTTCCCTTTTCGCTTATATCGAACCTGTAGTAGGAACCAACAGACATTATTGAGCTGGACAACGTAAAATCTAATACCTGACATCGATTTTAACCTTCGTGTTGACAGCTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAGGCAAGTTTTGTTTCTATTTGAAGCTGGAAAAAAAGAGAATTCCTAAGTCTAGCAGATTGTTTAGTAGATACCAACATCCAACATCATGATCATATTCTCCTAACTTGTGTCTGTGTCGAAGTAATTACTAGTAACTTTTATTCCCAAAGCTTATTCTATGAAAAATGTATATTAGTGTAAATAGCTTAGGTAATCCCCCAGACACGAAAACTGAGTTTTCCAATCTCTTGATACCATTTTAGCTTTTTATATCCTCTATAGCGTATATCAGCTAGTTGGTTCTCGGATATTGACTGTAAATGTTAATTCTCTTTGGATATTTCTCTATTTTATATCTCTCTTCTTATATATTTGCTGCTAATGCTTTTTCCGAACAGACGAGATCTGAAATGTAATTCGTTCTCAGCTGACGTAATACTGAAGCTCCATTAATCATTCTCTAAGACTTTCCACTACATGTCGAGATCAATGTGCTTAATCTATGACACTAAGTTGACACTGTCATATTTGTGTTATCAGAAGGAATTGCTTTCTGCTAATCGGGATCTTTTTTATCCCGATAATAATTTGACTGGATTAAAGAACACAATCATTTGTTGGTTCTAAAGTTGGTGCTATGAGTAGTTTCACAACCTTCCAAATCAAGTTAACAAGGGTCTGAACTGTTTGAATGTGAAGTTCTGCCATGGCTTTGTAAAGATATTTCAGCTTTAATCATCCCCTTGATATAACTTACGATTAAGTTCCTCTTAGATGCTCTTTGGGAAAACTGTTCATGAAAACTAGAAAGTTTGGCTTCACTGACTAGTTTTATCTGTATCGCTTGTTGAATCACTGACTGTTCAACTCGAGAGAGTTTTTTATATATGATAGCATATGGACATGGGTAATCTTTATCAATTTAAACTCGTGATTGAGTATGCAATACGAATTCCTCCTGCACTATTTCACACTTCTTTTTGCTAAAAACTCTACAACCACATTATGTTCTGCAGGTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAATGTAAGTCTAAACTTCTTTATCCACCTCTTAAAAATCTAGGTAGACTCAATCGAAACGTGCTTTTGTTTGTTCGCTCTTAGTGAAGAAACAAAAAGCGAACCTAATGTGGGAAGGAAATATAGAACGTTGTTTGATCTTTCTCGTTGAATCTCTAACGACAACATACCCAATGTAATCCGTCAAGGGGGGTCTACGGTTGGTGGAGTGTACACAAACCTTACCCTTACCTCGTGGAGGTAGAGAGGCTGTTTCTGAAAGATTGGACACTACTCTGTGCAGGATACTGAACTGGCGAACATCTCCTAGTATTCTGCCTGTCCTGCTAACGCGGGATGCTTTGTGCATTTGACTTGCCACTTTTTCTCTACTTATACATAGCCTTAGCTCGATATTGAATTATTTCTGTATGACTAGTTTTGCAACAGTTGTGAACTGGTTTATGAACATTCTGTCTTTCTGTCTTTTCTTTTTCTAGTTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCGGTACGACAGTCTTTCTTTATCCTTGAAATATGTTAACAACAACGACTATCCCTCAGTCTCAAACAAGTTGGCCAAATTATTCCAGAAATGAAAAATGAGTTGTAACTTTGTGTTGGCTCGATTACGTGTGAATTTTACTGTAGTATCTATTCTATTCCATCACAAGCTTCGTATGTTGATTAAATCCTCTTGCAGGCAATGCGATCATCT</genome_strand>
        <mrna_strand>TTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG................................................................................................................................................GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCCGACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG...................................................................................................................................................................................................GCAATGCGATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288481" ref_strand="+" ref_description="SGN-E288481 [cLES-8-A10]">
      <seq>ttccgaatcatactagctacgttgttgttgtaaagtttgaatctttatgtattaggtgggtactgttttaatcagcttaggattcaaggttctgtaatgggtcagctgattactgaagatgtgaagtttttatctttagtagaatttgtttgctcatgtaaagtttgaatctttacaagttgggctttttgaatcagcttagagttcaagattctctaatggggcaactgattactgaaaatggttcaagattctctaaaggggaaattgattactgaagatgacttcaaatggagattgcccacaagagaaaaagaaggaagttgtgaaatattgaagtatgttggtggggttgacttaagtttttcaaaagatgattcatctattgcctgtggcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="45620" stop="47038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45920" g_stop="46161" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46162" i_stop="46579" i_length="418">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46580" g_stop="46738" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="401" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E288481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45920" e_stop="46161"/>
          <exon e_start="46580" e_stop="46738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCTGTAGTCATTTTTGCACATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCAGTAGTCATTTTTGCAAATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTATAGATTTTTGCTTCATTAGTAATTTTACACATGTAAAGTTTGATTTACAAGTAGTTTGCTGTTTTAATCAGCTTAGAATTCAAGATTCTCCAATGGGGTAACTGATTATTGAAGATGTAATGTTTTTTGCTTCAGTAGTAATTTATGTACATGTAAAGGTTATCTTTACAAGTTGGATACTTTTTTACTCAGCTCAGGGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCT</genome_strand>
        <mrna_strand>TTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539946" ref_strand="+" ref_description="SGN-E539946 [TUS-59-P13](-)">
      <seq>tactgaaaatggttcaagattctctaaaaggggaaattgattactgaagatgacttcaaatggagattgcccacaagagaaaaagaaggaagttgtgaaatattgaagtatgttggtggggttgacttaagtttttcaaaagatgattcatctattgcctgtggcactcttgttgtgttggacttgacgactcagaaagttgtttatgaagattcgtctattgttaggcttcacattccatatcttcctggcttccttgctttcagagaggctcctgtgcttctggaacttttggataaaatgaagaacaatgctcattgtttctacccgcaggttttggtttggcttgtcatattggtgtcttagctgatcttcctactgttggggtgggaaagaatttacaccacgttgatggtcttacacaatctacggtaagagaactccttcaagcagcagactctcccgaacatatcttaccgctaattggggactctggatgtatctggggagcggcaatgcgatcatctgagggctctttgaagcccatatttatttcagttggtcaccgtatatctctcgccagtgccattgcaattgtgaggatgacttgcaaatttcgtgttccagagcccatccggcaggctgatataagatcgagggagcgcctgcggaacaatcaatgattatgtacacaatcgtttctctgtatatttgctgagttttggtgaactatgagtaccatggaaatttctgtaatatttcataaacttgactataagaatctggtattggtagggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="46278" stop="50347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46489" g_stop="46498" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46499" i_stop="46579" i_length="81">
            <donor d_prob="0.359" d_score="0.00"/>
            <acceptor a_prob="0.850" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46580" g_stop="46838" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="270" r_length="260" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46983" g_stop="47045" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="333" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47046" i_stop="48712" i_length="1667">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48713" g_stop="48777" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="398" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49253" g_stop="49366" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="512" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195">
            <donor d_prob="0.444" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49562" g_stop="49690" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="641" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49691" i_stop="49888" i_length="198">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49889" g_stop="50042" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="795" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="808"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E539946" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46489" e_stop="46498"/>
          <exon e_start="46580" e_stop="46838"/>
          <exon e_start="46983" e_stop="47045"/>
          <exon e_start="48713" e_stop="48777"/>
          <exon e_start="49253" e_stop="49366"/>
          <exon e_start="49562" e_stop="49690"/>
          <exon e_start="49889" e_stop="50042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAAGATGTAATGTTTTTTGCTTCAGTAGTAATTTATGTACATGTAAAGGTTATCTTTACAAGTTGGATACTTTTTTACTCAGCTCAGGGTTCAAGATTCTCTAA-AGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAGGTCTTATACATATTCTCTATATTATCCGTTGCTCGCAATGTGTTTTGACTTATCGCCTTTGTTGTTTGTCTAAAAAGGAGGGATCATGTCTATATGTTTTGAATAATGTAAACTGATATCTGTAATATTGAACTGGTTCTTTAGGCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAGGTAAATGTTGATAACTTTCCTCCTTCGTTGCTCCCCTCTCCCTACTTATTTTCAGTCTACAAATGGTGAAACATTGATCAAGAGTGTATACCATGTAGTAAAAGAACTGTAGAGCTGCAATCGTCTCCTGGAAAGACATTGTATAGTATTCGGCAGGTTAGACCAACTCTACACCTTCCGCATACCATCAGTATTCTGCTTCACACTGAACCCGTTCCCGATTATAGGCAGGAAGTTTGACCTCATCTGCTAACTCAAATAGATGAAGCACATTGTATTACTCTATCTACTATGATGTACTCAAGAGGGCAAAAGGCACAATTTTGGTAAAACAATATAAGAATAATGTTGAAGTTGTACAAACGGAAGCCTCATTTGGCAGTGTAACAGGACCAAAACATCTAAGAGTTAGTGGTTGTATTTAGTTTTACGGGCATTTAAGTGGAACTTTGACTTCCAATATAGATGCCGCTAAGGGTTTATGTTACAAAACTTGCTCTCACTGGTAATTCTAATTCTTCCCCCTTCCCTTTTCGCTTATATCGAACCTGTAGTAGGAACCAACAGACATTATTGAGCTGGACAACGTAAAATCTAATACCTGACATCGATTTTAACCTTCGTGTTGACAGCTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAGGCAAGTTTTGTTTCTATTTGAAGCTGGAAAAAAAGAGAATTCCTAAGTCTAGCAGATTGTTTAGTAGATACCAACATCCAACATCATGATCATATTCTCCTAACTTGTGTCTGTGTCGAAGTAATTACTAGTAACTTTTATTCCCAAAGCTTATTCTATGAAAAATGTATATTAGTGTAAATAGCTTAGGTAATCCCCCAGACACGAAAACTGAGTTTTCCAATCTCTTGATACCATTTTAGCTTTTTATATCCTCTATAGCGTATATCAGCTAGTTGGTTCTCGGATATTGACTGTAAATGTTAATTCTCTTTGGATATTTCTCTATTTTATATCTCTCTTCTTATATATTTGCTGCTAATGCTTTTTCCGAACAGACGAGATCTGAAATGTAATTCGTTCTCAGCTGACGTAATACTGAAGCTCCATTAATCATTCTCTAAGACTTTCCACTACATGTCGAGATCAATGTGCTTAATCTATGACACTAAGTTGACACTGTCATATTTGTGTTATCAGAAGGAATTGCTTTCTGCTAATCGGGATCTTTTTTATCCCGATAATAATTTGACTGGATTAAAGAACACAATCATTTGTTGGTTCTAAAGTTGGTGCTATGAGTAGTTTCACAACCTTCCAAATCAAGTTAACAAGGGTCTGAACTGTTTGAATGTGAAGTTCTGCCATGGCTTTGTAAAGATATTTCAGCTTTAATCATCCCCTTGATATAACTTACGATTAAGTTCCTCTTAGATGCTCTTTGGGAAAACTGTTCATGAAAACTAGAAAGTTTGGCTTCACTGACTAGTTTTATCTGTATCGCTTGTTGAATCACTGACTGTTCAACTCGAGAGAGTTTTTTATATATGATAGCATATGGACATGGGTAATCTTTATCAATTTAAACTCGTGATTGAGTATGCAATACGAATTCCTCCTGCACTATTTCACACTTCTTTTTGCTAAAAACTCTACAACCACATTATGTTCTGCAGGTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAATGTAAGTCTAAACTTCTTTATCCACCTCTTAAAAATCTAGGTAGACTCAATCGAAACGTGCTTTTGTTTGTTCGCTCTTAGTGAAGAAACAAAAAGCGAACCTAATGTGGGAAGGAAATATAGAACGTTGTTTGATCTTTCTCGTTGAATCTCTAACGACAACATACCCAATGTAATCCGTCAAGGGGGGTCTACGGTTGGTGGAGTGTACACAAACCTTACCCTTACCTCGTGGAGGTAGAGAGGCTGTTTCTGAAAGATTGGACACTACTCTGTGCAGGATACTGAACTGGCGAACATCTCCTAGTATTCTGCCTGTCCTGCTAACGCGGGATGCTTTGTGCATTTGACTTGCCACTTTTTCTCTACTTATACATAGCCTTAGCTCGATATTGAATTATTTCTGTATGACTAGTTTTGCAACAGTTGTGAACTGGTTTATGAACATTCTGTCTTTCTGTCTTTTCTTTTTCTAGTTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCGGTACGACAGTCTTTCTTTATCCTTGAAATATGTTAACAACAACGACTATCCCTCAGTCTCAAACAAGTTGGCCAAATTATTCCAGAAATGAAAAATGAGTTGTAACTTTGTGTTGGCTCGATTACGTGTGAATTTTACTGTAGTATCTATTCTATTCCATCACAAGCTTCGTATGTTGATTAAATCCTCTTGCAGGCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTATTTCAGTTGGTCACCGTATATCTCTCGCCAGTGCCATTGCAATTGTGAGGATGACTTGCAAATTTCGTGTTCCAGAGCCCATCCGGCAGGTTAGTGTTAGAACTTTACCGCATAGTTGCTGCTGCTGATGTCTGATTTATATTTCTTCACTCTCATCGGAAACGGTCTCTCTACCTCACCTATGAGGTAGAGATAAAGGTCTGCATACACTTTACGACCTCACTGTGTGGGACTACACTGGGTATGTAGTCGTTGTTGTTGTCATTCTTTTACATCTGATGTTGTAGGCTGATATAAGATCGAGGGAGCGCCTGCGGAACAATCAATGATTATGTACACAATCGTTTCTCTGTATATTTGCTGAGTTTTGGTGAACTATGAGTACCATGGAAATTTCTGTAATATTTCATAAACTTGACTATAAGAATCTGGTATTGGTAG</genome_strand>
        <mrna_strand>TACTGAAAAT.................................................................................GGTTCAAGATTCTCTAAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG................................................................................................................................................GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG...................................................................................................................................................................................................GCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTATTTCAGTTGGTCACCGTATATCTCTCGCCAGTGCCATTGCAATTGTGAGGATGACTTGCAAATTTCGTGTTCCAGAGCCCATCCGGCAG......................................................................................................................................................................................................GCTGATATAAGATCGAGGGAGCGCCTGCGGAACAATCAATGATTATGTACACAATCGTTTCTCTGTATATTTGCTGAGTTTTGGTGAACTATGAGTACCATGGAAATTTCTGTAATATTTCATAAACTTGACTATAAGAATCTGGTATTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314941" ref_strand="+" ref_description="SGN-E314941 [cTOA-31-C13]">
      <seq>atcgagggagcgcctgcggaacaatcaatgattatgtacacaatcgtttctctgtatatttgctgagttttggtgaactatgagtaccatggaaatttctgtaatatttcataaacttgactataagaatctggtattggtaggtgtattttttgctatgtttgctcctactcttttaaaatatcgatgtttgcgtgtcggatcctcagctccaaaggtaatgcaattttggaggattcaacataagtacaacaacattttagaaaaatccgagcaaaatagttgataaatgttccaataatattttgatgaacctagcatattggaggtatttattcacaattcttttgtaggcatatatatcctttatactttacttcaactgatatttatactccaactttaaatgtatgtaaagtatacttaaacttgtataaaattgagctagtagacacagttctatgtgtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="49600" stop="50672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49900" g_stop="50372" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E314941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49900" e_stop="50372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGGGAGCGCCTGCGGAACAATCAATGATTATGTACACAATCGTTTCTCTGTATATTTGCTGAGTTTTGGTGAACTATGAGTACCATGGAAATTTCTGTAATATTTCATAAACTTGACTATAAGAATCTGGTATTGGTAGGTGTATTTTTTGCTATGTTTGCTCCTACTCTTTTAAAATATCGATGTTTGCGTGTCGGATCCTCAGCTCCAAAGGTAATGCAATTTTGGAGGATTCAACATAAGTACAACAACATTTTAGAAAAATCCGAGCAAAATAGTTGATAAATGTTCCAATAATATTTTGATGAACCTAGCATATTGGAGGTATTTATTCACAATTCTTTTGTAGGCATATATATCCTTTATACTTTACTTCAACTGATATTTATACTCCAACTTTAAATGTATGTAAAGTATACTTAAACTTGTATAAAATTGAGCTAGTAGACACAGTTCTATGTGTATTATA</genome_strand>
        <mrna_strand>ATCGAGGGAGCGCCTGCGGAACAATCAATGATTATGTACACAATCGTTTCTCTGTATATTTGCTGAGTTTTGGTGAACTATGAGTACCATGGAAATTTCTGTAATATTTCATAAACTTGACTATAAGAATCTGGTATTGGTAGGTGTATTTTTTGCTATGTTTGCTCCTACTCTTTTAAAATATCGATGTTTGCGTGTCGGATCCTCAGCTCCAAAGGTAATGCAATTTTGGAGGATTCAACATAAGTACAACAACATTTTAGAAAAATCCGAGCAAAATAGTTGATAAATGTTCCAATAATATTTTGATGAACCTAGCATATTGGAGGTATTTATTCACAATTCTTTTGTAGGCATATATATCCTTTATACTTTACTTCAACTGATATTTATACTCCAACTTTAAATGTATGTAAAGTATACTTAAACTTGTATAAAATTGAGCTAGTAGACACAGTTCTATGTGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231414" ref_strand="+" ref_description="SGN-E231414 [cLED-10-L24]">
      <seq>aaatacaaatcgatctccatttcctccatctctcttcaagctctaattgtgaagctttaatggagtcgtcgtcgtcatcaccagcttcacgagaactggatgaggtacaaacagatcttccttcatctgtaagatccgcttcgagaatcagagctccgaataatatggttatggggaaacatcgtcttgctgctgcaatttctgctctcaatcaacanatcaacatcattcaggaagaatcggatcagcttgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="50765" stop="51598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51065" g_stop="51297" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51298" i_stop="51384" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51385" g_stop="51407" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="256" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E231414" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51065" e_stop="51297"/>
          <exon e_start="51385" e_stop="51407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAATCGATCTCCATTTCCTCCATCTCTCTTCAAGCTCTAATTTTGAAGCTTTAATGGAGTCGTCGTCGTCATCACCAGCTTCACGAGAACTGGATGAGGTACAAACAGATCTTCCTTCATCTGTAAGATCCGCTTCGAGAATCAGAGCTCCGAATAATATGGTTATGGGGAAACATCGTCTTGCTGCTGCAATTTCTGCTCTCAATCAACAAATCAACATCATTCAGGTCATTATTTCAATATTTACTGGGTTTTGAGCTTTTTTTTTCTTTCTTCTTCTTCGTAATTTGGGGATTTTTTTTTTGTTATTTTAGGAAGAATTGGATCAGCTTGACTC</genome_strand>
        <mrna_strand>AAATACAAATCGATCTCCATTTCCTCCATCTCTCTTCAAGCTCTAATTGTGAAGCTTTAATGGAGTCGTCGTCGTCATCACCAGCTTCACGAGAACTGGATGAGGTACAAACAGATCTTCCTTCATCTGTAAGATCCGCTTCGAGAATCAGAGCTCCGAATAATATGGTTATGGGGAAACATCGTCTTGCTGCTGCAATTTCTGCTCTCAATCAACANATCAACATCATTCAG.......................................................................................GAAGAATCGGATCAGCTTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327146" ref_strand="+" ref_description="SGN-E327146 [cTOC-18-K24]">
      <seq>cgatctccatttcctccatctctcttcaagctctaattttgaagctttaatggagtcgtcgtcgtcatcaccagcttcacgagaactggatgaggtacaaacagatcttccttcatctgtaagatccgcttcgagaatcagagctccgaataatatggttatggggaaacatcgtcttgctgctgcaatttctgctctcaatcaacaaatcaacatcattcaggaagaattggatcagcttgactcgtttggtgaagcttcactcgtttgcagagaattagtttcaagtgttgagttaatacctgatgctctccttccagtgactagaggaccaataaatgttcatttagatagatggtttcatggagttaacgattcaagacgcaacaaacgctggatatgaaaaaggaatttgtaccaaaaactacgtaaatcaattcgaataccctcttctttttttggtttattttgtaattaaatttttaaatttctttgttttcttgactgctatattattaggtctttatattctatatatatctgctgttgaatattgctgatgaaataatgtaggtaagtatgttttgtaactcatacacttcccaagtattaataaaagtgtgttatatgcacaaaaaattgtttcaacttgacaaaaaaatcgtattttagtagatnaggatagaagagacgatccatattatatcgagactgtaactgtggggagttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="50775" stop="53059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51075" g_stop="51297" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51298" i_stop="51384" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51385" g_stop="51437" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="276" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51438" i_stop="52160" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52161" g_stop="52205" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="321" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52206" i_stop="52348" i_length="143">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52349" g_stop="52759" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="733" r_length="412" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E327146" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51075" e_stop="51297"/>
          <exon e_start="51385" e_stop="51437"/>
          <exon e_start="52161" e_stop="52205"/>
          <exon e_start="52349" e_stop="52759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTCCATTTCCTCCATCTCTCTTCAAGCTCTAATTTTGAAGCTTTAATGGAGTCGTCGTCGTCATCACCAGCTTCACGAGAACTGGATGAGGTACAAACAGATCTTCCTTCATCTGTAAGATCCGCTTCGAGAATCAGAGCTCCGAATAATATGGTTATGGGGAAACATCGTCTTGCTGCTGCAATTTCTGCTCTCAATCAACAAATCAACATCATTCAGGTCATTATTTCAATATTTACTGGGTTTTGAGCTTTTTTTTTCTTTCTTCTTCTTCGTAATTTGGGGATTTTTTTTTTGTTATTTTAGGAAGAATTGGATCAGCTTGACTCGTTTGGTGAAGCTTCACTCGTTTGCAGAGAGTAAGTTTTTCGTATAACTTATTGTTTCTTCCATTTCAATTTTGAAAGTTTACTAGTCATAATAAATCATCGATTTTAACGTGTTCTATATGACATAATACAAATCAGTTCAAATGTATGTCATGTGAATTGCTATGTAGTAAGCATTTGTCGTAAAATTTTACGTAAGTTTAAGTGTGTGCTTATGCATATTTAAAGTTCGAGAATGTAACTGTCAGTTTGAGGTTGTTAAAAGAGCACATTGGTGATGATGATGATGATGACGACGTGTGTGTTAGAATTGGAGTGCTAAAAGAAGAATATGCAAAACTCTTTCGGGGTGGCTCATTGATTTGAGCTTGGGACTTTCATGTTGGAGATCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAGAGGTTCACCTTTTGAGTTGAGTATGTGATTTGCGAGTTATTGCATAGAAGCGGGGTTTTTACCTTGTGCACATTCAAAGCGTAGCGGTTGCGTGTTTCTCTAAGTGGGGTAGCGGGCTATGGATTTCCCTTGTCATAAAAATAATATGCAAATTTTATGTAAGAGCTCGATGTAGTGTCTACTTGTCAAATTCAAACAATAAAACACGACATTATGAAAGCGAAATATCTCATAATAGATATACAAACTTACTAGAGTAAAAATCTTTGAATTAAAAAGAGATTTTTTTTTTATAATTAACTTAATTATTGTGTTTTATTTTGTTGCAGATTAGTTTCAAGTGTTGAGTTAATACCTGATGCTCTCCTTCCAGTGTAAGTTATTTACTTTAATTTTGCTTTCATTTTTATCATCATTATGACTTAAGAGAGTGATTTCTTCCTATTGTCTAAGTTGGGTGGACAAAATTACTCGATATCTGTATTTTGGTTAAAATTTGTATGATTATTGGTTGCAGGACTAGAGGACCAATAAATGTTCATTTAGATAGATGGTTTCATGGAGTTAACGATTCAAGACGCAACAAACGCTGGATATGAAAAAGGAATTTGTACCAAAAACTACGTAAATCAATTCGAATACCCTCTTCTTTTTTTGGTTTATTTTGTAATTAAATTTTTAAATTTCTTTGTTTTCTTGACTGCTATATTATTAGGTCTTTATATTCTATATATATCTGCTGTTGAATATTGCTGATGAAATAATGTAGGTAAGTATGTTTTGTAACTCATACACTTCCCAAGTATTAATAAAAGTGTGTTATATGCACAAAAAATTGTTTCAACTTGACAAAAAAATCGTATTTAAGTAGATAAGGATAGAAGAGACGATCCATATTATATCGAGACTGTAACTGTGGAG-TTTACTG</genome_strand>
        <mrna_strand>CGATCTCCATTTCCTCCATCTCTCTTCAAGCTCTAATTTTGAAGCTTTAATGGAGTCGTCGTCGTCATCACCAGCTTCACGAGAACTGGATGAGGTACAAACAGATCTTCCTTCATCTGTAAGATCCGCTTCGAGAATCAGAGCTCCGAATAATATGGTTATGGGGAAACATCGTCTTGCTGCTGCAATTTCTGCTCTCAATCAACAAATCAACATCATTCAG.......................................................................................GAAGAATTGGATCAGCTTGACTCGTTTGGTGAAGCTTCACTCGTTTGCAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTTTCAAGTGTTGAGTTAATACCTGATGCTCTCCTTCCAGT...............................................................................................................................................GACTAGAGGACCAATAAATGTTCATTTAGATAGATGGTTTCATGGAGTTAACGATTCAAGACGCAACAAACGCTGGATATGAAAAAGGAATTTGTACCAAAAACTACGTAAATCAATTCGAATACCCTCTTCTTTTTTTGGTTTATTTTGTAATTAAATTTTTAAATTTCTTTGTTTTCTTGACTGCTATATTATTAGGTCTTTATATTCTATATATATCTGCTGTTGAATATTGCTGATGAAATAATGTAGGTAAGTATGTTTTGTAACTCATACACTTCCCAAGTATTAATAAAAGTGTGTTATATGCACAAAAAATTGTTTCAACTTGACAAAAAAATCGTATTTTAGTAGATNAGGATAGAAGAGACGATCCATATTATATCGAGACTGTAACTGTGGGGAGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695091" ref_strand="+" ref_description="SGN-E695091 [LH_Ea05K01](-)">
      <seq>cctcgtgccgaattcggcacgaggaataactattgtgacttatgtgcaagtcccacaactttcatacaggcagcagtccccaaaattattgaaaataccaaagaggatttcttcaaaaatacactccaaatgttgaagaaaaattcagatatatgttatgaaaagatacttgaaattccatgcctaaattgcccttataaacctcaaggttcaatggttgttatggtgaatcttaatataattctcctccaaaatataattgatgatatggacttctgttttaagcttgctaaggaggaatatgtcattttacttcctggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgcctcaggcattcaaagccccaaaacttaattaattaattaatgctaattttctggatttttcattttcataattcttggccaatttggtgaaaaaggtcaagcataatgttaattccaaaactttgttcttaaaagataattaataaaatttccttatttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="64571" stop="6939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64277" g_stop="64218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="69" r_length="58" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63747" g_stop="63592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="225" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63474" g_stop="63381" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="319" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62059" g_stop="61786" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="581" r_length="262" r_score="0.898"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61785" i_stop="61585" i_length="201">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.639" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61584" g_stop="61572" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="594" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E695091" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64277" e_stop="64218"/>
          <exon e_start="63747" e_stop="63592"/>
          <exon e_start="63474" e_stop="63381"/>
          <exon e_start="62059" e_stop="61786"/>
          <exon e_start="61584" e_stop="61572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAGGTAAATCGTAGTCTATATATCGTCAGTATAAATAATATTTTTATACGACATCAATTCATTCAAGTGATATATATAAATAAGTCTCTTTACCATATAAAATTTGAACTATTGAACACATATAAGATATGTTATAAGCTACAACAAGTATGGATAACTTGATGGTGTAAAATTATTTATTCCGATAATATATATATATATATTACGTAAACTCATAAAAAAAATCTACGTTTCAGAGTTTCAAAATTCACAACTCTTGAATTTTGAACGCTAGCTAGAACAATAACTAATTTTCAAATATAAGATAAAAAGTAGACATATGACATTATTAATTTCTATCTATCATATCCAAAACACGTTGTATCGATTGTAATAGATAACCTATATTATATAGATTAAACGTTAAACTATATTGACAGTGTATATAATTTATTTTTATTTTTATTTTTGTAAAAATTATTTTGATTTTGCAGGCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATGGTAAATTCTTTAACTTCCACAAAACTTTTAATTTCATACAATTTGGTCCCTTCTTTTTTGCTTTTATTTCTTTTTAGTCCTATTCTTTTAAATTTTAATTTTCTATATGATGAATAGGTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTGGTTAGTACAACAACTCAGAATATAAAGATATTTTACTTTTATTTTTTAATTAATATAAATATATATATATATATATATATATATATATTACTCAAAATATGAATATGAAATTGCAGAGTCCGGAGCCTAAAGGGTATAAAATATTAACAAAATTCCAAAAATATTAACCAAAATGACAAAATCGCTGAAACAACAGCGATTTCCTCCGCCGGAAACAACGATTTTGCAAAATGTGATTTTTTTTTTAAAAAAAAAATTAAGAAAATCTCTGCCTAGGCAACAATTTTCTTGAATGATTTTTAAAAAAAAATGAAAATCGCTGTCCATGGCAGCGATTTTCTTGAAATTTTTTTTTAAAAAAAAAATAATAAAAATCGCTGCCTAAAAAAAATTTTCTAAAAGAAAAAAGAATCACATTTAAAAGCTTTTTTGGGACGGAGGAAATTGCTGTTGTTCCAGCGATTTTGCCGTTTTGATTAATATAAAATTTTATATATCGTTTTAAAATTTTATTAATATTTTATACCCTTTAGGCTCCGGACTCTGAAATTGTGTTTGATTGTATAGGGAGATTATAAAAGAAAATGAGATTTTTGGAGATACCAAATACATCATACAATATTTGAGATCTTAAATATGTCATGATACTTTTATATTTATTATTAAGAGTATGTTATTATGAGTATAATTAGATATTTAAAATTTTGATATTTTATTTATAGAAATGGATGATTTTTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTT-GCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGATTTGCACTTCTTTCGGAAATAATTTATCTACTTTTATGAAATTGTGATAAAATTTGCATACTTTTTTATCTTTCCTCAATTTAATTTGTAGAACTTTACTGAACATGTTATTGACATCGTCGTATCTTTTCAAACTCTACTATGGAATTATTATTATTATTATATATACATATAATCATATTAATATTATGTACAAAGATACAGGAAAAAA</genome_strand>
        <mrna_strand>ATTC-GGCACG-AGGAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCCAAATGTTGAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTATAAACCTCAAGGTTCAATGGTTGTTATG.....................................................................................................................GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTCAGGCATTCAAAGCCCC---A---AA--ACTTAA-T---TAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGGCCAATTTGGTGAAAAAGGTCAAGCATAATGTTAATTCCAAAACTTTGTTCTTA-AAAGATAATTAATAAAATTTCCTTATTTAGTAAAAA.........................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691251" ref_strand="+" ref_description="SGN-E691251 [LH_Ea05K01]">
      <seq>caataaacgtgccgaattcggnacgaggaataactatngtcttttaaatgcaagtcccacaactttcatacaggcagcagtccccaaaattattgaaaataccaaagaggatttcttcaaaaatacactccaaatgttgaagaaaaattcagatatatgttatgaaaagatacttgaaattccatgcctaaattgcccttataaacctcaaggttcaatggttgttatggtgaatcttaatataattctcctccaaaatataattgatgatatggacttctgttttaagcttgctaaggaggaatatgtcattttacttcctggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgcctcaggcattcaaagccccaaaacttaattaattaattaatgctaattttctggatttttcattttcataattcttggccaatttggtgaataaattcaagcataatgttaattccaaaactttgttgttatttaaataattaataaaatttccttatttagttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="64547" stop="61486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64277" g_stop="64218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="73" r_length="58" r_score="0.767"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470">
            <donor d_prob="0.962" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63747" g_stop="63592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="229" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63474" g_stop="63381" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="323" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62059" g_stop="61789" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="583" r_length="260" r_score="0.930"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61788" i_stop="61585" i_length="204">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.639" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61584" g_stop="61572" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="596" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E691251" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64277" e_stop="64218"/>
          <exon e_start="63747" e_stop="63592"/>
          <exon e_start="63474" e_stop="63381"/>
          <exon e_start="62059" e_stop="61789"/>
          <exon e_start="61584" e_stop="61572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAGGTAAATCGTAGTCTATATATCGTCAGTATAAATAATATTTTTATACGACATCAATTCATTCAAGTGATATATATAAATAAGTCTCTTTACCATATAAAATTTGAACTATTGAACACATATAAGATATGTTATAAGCTACAACAAGTATGGATAACTTGATGGTGTAAAATTATTTATTCCGATAATATATATATATATATTACGTAAACTCATAAAAAAAATCTACGTTTCAGAGTTTCAAAATTCACAACTCTTGAATTTTGAACGCTAGCTAGAACAATAACTAATTTTCAAATATAAGATAAAAAGTAGACATATGACATTATTAATTTCTATCTATCATATCCAAAACACGTTGTATCGATTGTAATAGATAACCTATATTATATAGATTAAACGTTAAACTATATTGACAGTGTATATAATTTATTTTTATTTTTATTTTTGTAAAAATTATTTTGATTTTGCAGGCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATGGTAAATTCTTTAACTTCCACAAAACTTTTAATTTCATACAATTTGGTCCCTTCTTTTTTGCTTTTATTTCTTTTTAGTCCTATTCTTTTAAATTTTAATTTTCTATATGATGAATAGGTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTGGTTAGTACAACAACTCAGAATATAAAGATATTTTACTTTTATTTTTTAATTAATATAAATATATATATATATATATATATATATATATTACTCAAAATATGAATATGAAATTGCAGAGTCCGGAGCCTAAAGGGTATAAAATATTAACAAAATTCCAAAAATATTAACCAAAATGACAAAATCGCTGAAACAACAGCGATTTCCTCCGCCGGAAACAACGATTTTGCAAAATGTGATTTTTTTTTTAAAAAAAAAATTAAGAAAATCTCTGCCTAGGCAACAATTTTCTTGAATGATTTTTAAAAAAAAATGAAAATCGCTGTCCATGGCAGCGATTTTCTTGAAATTTTTTTTTAAAAAAAAAATAATAAAAATCGCTGCCTAAAAAAAATTTTCTAAAAGAAAAAAGAATCACATTTAAAAGCTTTTTTGGGACGGAGGAAATTGCTGTTGTTCCAGCGATTTTGCCGTTTTGATTAATATAAAATTTTATATATCGTTTTAAAATTTTATTAATATTTTATACCCTTTAGGCTCCGGACTCTGAAATTGTGTTTGATTGTATAGGGAGATTATAAAAGAAAATGAGATTTTTGGAGATACCAAATACATCATACAATATTTGAGATCTTAAATATGTCATGATACTTTTATATTTATTATTAAGAGTATGTTATTATGAGTATAATTAGATATTTAAAATTTTGATATTTTATTTATAGAAATGGATGATTTTTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTT-GCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGATTTGCACTTCTTTCGGAAATAATTTATCTACTTTTATGAAATTGTGATAAAATTTGCATACTTTTTTATCTTTCCTCAATTTAATTTGTAGAACTTTACTGAACATGTTATTGACATCGTCGTATCTTTTCAAACTCTACTATGGAATTATTATTATTATTATATATACATATAATCATATTAATATTATGTACAAAGATACAGGAAAAAA</genome_strand>
        <mrna_strand>AT-TCGGNACG-AGGAATAACTATNGTCTTTTAAATGCAAGTCCCACAACTTTCATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCCAAATGTTGAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTATAAACCTCAAGGTTCAATGGTTGTTATG.....................................................................................................................GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTCAGGCATTCAAAGCCCC---A---AA--ACTTAA-T---TAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAAAACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTTA............................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691252" ref_strand="+" ref_description="SGN-E691252 [LH_Ea05K02]">
      <seq>ttatatgccgaattcggcacgaggaataactattgtgacttatgtgcaagtcccacaactttcatacaggcagcagtccccaaaattattgaaaataccaaagaggatttcttcaaaaatacactccaaatgttgaagaaaaattcagatatatgttatgaaaagatacttgaaattccatgcctaaattgcccttataaacctcaaggttcaatggttgttatggtgaatcttaatataattctcctccaaaatataattgatgatatggacttctgttttaagcttgctaaggaggaatatgtcattttacttcctggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgcctcaggcattcaaagccccaaaacttaattaattaattaatgctaattttctggatttttcattttcataattcttggccaatttggtgaataaattcaagcataatgttaattccaaaactttgttgttatttaaataattaataaaatttccttatttagttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="64571" stop="61486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64277" g_stop="64218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="69" r_length="58" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63747" g_stop="63592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="225" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63474" g_stop="63381" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="319" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62059" g_stop="61789" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="579" r_length="260" r_score="0.930"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61788" i_stop="61585" i_length="204">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.639" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61584" g_stop="61572" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="592" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E691252" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64277" e_stop="64218"/>
          <exon e_start="63747" e_stop="63592"/>
          <exon e_start="63474" e_stop="63381"/>
          <exon e_start="62059" e_stop="61789"/>
          <exon e_start="61584" e_stop="61572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAGGTAAATCGTAGTCTATATATCGTCAGTATAAATAATATTTTTATACGACATCAATTCATTCAAGTGATATATATAAATAAGTCTCTTTACCATATAAAATTTGAACTATTGAACACATATAAGATATGTTATAAGCTACAACAAGTATGGATAACTTGATGGTGTAAAATTATTTATTCCGATAATATATATATATATATTACGTAAACTCATAAAAAAAATCTACGTTTCAGAGTTTCAAAATTCACAACTCTTGAATTTTGAACGCTAGCTAGAACAATAACTAATTTTCAAATATAAGATAAAAAGTAGACATATGACATTATTAATTTCTATCTATCATATCCAAAACACGTTGTATCGATTGTAATAGATAACCTATATTATATAGATTAAACGTTAAACTATATTGACAGTGTATATAATTTATTTTTATTTTTATTTTTGTAAAAATTATTTTGATTTTGCAGGCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATGGTAAATTCTTTAACTTCCACAAAACTTTTAATTTCATACAATTTGGTCCCTTCTTTTTTGCTTTTATTTCTTTTTAGTCCTATTCTTTTAAATTTTAATTTTCTATATGATGAATAGGTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTGGTTAGTACAACAACTCAGAATATAAAGATATTTTACTTTTATTTTTTAATTAATATAAATATATATATATATATATATATATATATATTACTCAAAATATGAATATGAAATTGCAGAGTCCGGAGCCTAAAGGGTATAAAATATTAACAAAATTCCAAAAATATTAACCAAAATGACAAAATCGCTGAAACAACAGCGATTTCCTCCGCCGGAAACAACGATTTTGCAAAATGTGATTTTTTTTTTAAAAAAAAAATTAAGAAAATCTCTGCCTAGGCAACAATTTTCTTGAATGATTTTTAAAAAAAAATGAAAATCGCTGTCCATGGCAGCGATTTTCTTGAAATTTTTTTTTAAAAAAAAAATAATAAAAATCGCTGCCTAAAAAAAATTTTCTAAAAGAAAAAAGAATCACATTTAAAAGCTTTTTTGGGACGGAGGAAATTGCTGTTGTTCCAGCGATTTTGCCGTTTTGATTAATATAAAATTTTATATATCGTTTTAAAATTTTATTAATATTTTATACCCTTTAGGCTCCGGACTCTGAAATTGTGTTTGATTGTATAGGGAGATTATAAAAGAAAATGAGATTTTTGGAGATACCAAATACATCATACAATATTTGAGATCTTAAATATGTCATGATACTTTTATATTTATTATTAAGAGTATGTTATTATGAGTATAATTAGATATTTAAAATTTTGATATTTTATTTATAGAAATGGATGATTTTTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTT-GCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGATTTGCACTTCTTTCGGAAATAATTTATCTACTTTTATGAAATTGTGATAAAATTTGCATACTTTTTTATCTTTCCTCAATTTAATTTGTAGAACTTTACTGAACATGTTATTGACATCGTCGTATCTTTTCAAACTCTACTATGGAATTATTATTATTATTATATATACATATAATCATATTAATATTATGTACAAAGATACAGGAAAAAA</genome_strand>
        <mrna_strand>ATTC-GGCACG-AGGAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCCAAATGTTGAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTATAAACCTCAAGGTTCAATGGTTGTTATG.....................................................................................................................GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTCAGGCATTCAAAGCCCC---A---AA--ACTTAA-T---TAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAAAACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTTA............................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695092" ref_strand="+" ref_description="SGN-E695092 [LH_Ea05K02](-)">
      <seq>cctcgtgccgaattcggcacgaggaataactattgtgacttatgtgcaagtcccacaactttcatacaggcagcagtccccaaaattattgaaaataccaaagaggatttcttcaaaaatacactccaaatgttgaagaaaaattcagatatatgttatgaaaagatacttgaaattccatgcctaaattgcccttataaacctcaaggttcaatggttgttatggtgaatcttaatataattctcctccaaaatataattgatgatatggacttctgttttaagcttgctaaggaggaatatgtcattttacttcctggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgcctcaggcattcaaagccccaaaacttaattaattaattaatgctaattttctggatttttcattttcataattcttggccaatttggtgaataaggtcaagcataatgttaattccaaaactttgttgttaaaagggtaattaataaaatttccttatttagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="64571" stop="61486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64277" g_stop="64218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="69" r_length="58" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63747" g_stop="63592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="225" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63474" g_stop="63381" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="319" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62059" g_stop="61777" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="591" r_length="272" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E695092" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64277" e_stop="64218"/>
          <exon e_start="63747" e_stop="63592"/>
          <exon e_start="63474" e_stop="63381"/>
          <exon e_start="62059" e_stop="61777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAGGTAAATCGTAGTCTATATATCGTCAGTATAAATAATATTTTTATACGACATCAATTCATTCAAGTGATATATATAAATAAGTCTCTTTACCATATAAAATTTGAACTATTGAACACATATAAGATATGTTATAAGCTACAACAAGTATGGATAACTTGATGGTGTAAAATTATTTATTCCGATAATATATATATATATATTACGTAAACTCATAAAAAAAATCTACGTTTCAGAGTTTCAAAATTCACAACTCTTGAATTTTGAACGCTAGCTAGAACAATAACTAATTTTCAAATATAAGATAAAAAGTAGACATATGACATTATTAATTTCTATCTATCATATCCAAAACACGTTGTATCGATTGTAATAGATAACCTATATTATATAGATTAAACGTTAAACTATATTGACAGTGTATATAATTTATTTTTATTTTTATTTTTGTAAAAATTATTTTGATTTTGCAGGCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATGGTAAATTCTTTAACTTCCACAAAACTTTTAATTTCATACAATTTGGTCCCTTCTTTTTTGCTTTTATTTCTTTTTAGTCCTATTCTTTTAAATTTTAATTTTCTATATGATGAATAGGTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTGGTTAGTACAACAACTCAGAATATAAAGATATTTTACTTTTATTTTTTAATTAATATAAATATATATATATATATATATATATATATATTACTCAAAATATGAATATGAAATTGCAGAGTCCGGAGCCTAAAGGGTATAAAATATTAACAAAATTCCAAAAATATTAACCAAAATGACAAAATCGCTGAAACAACAGCGATTTCCTCCGCCGGAAACAACGATTTTGCAAAATGTGATTTTTTTTTTAAAAAAAAAATTAAGAAAATCTCTGCCTAGGCAACAATTTTCTTGAATGATTTTTAAAAAAAAATGAAAATCGCTGTCCATGGCAGCGATTTTCTTGAAATTTTTTTTTAAAAAAAAAATAATAAAAATCGCTGCCTAAAAAAAATTTTCTAAAAGAAAAAAGAATCACATTTAAAAGCTTTTTTGGGACGGAGGAAATTGCTGTTGTTCCAGCGATTTTGCCGTTTTGATTAATATAAAATTTTATATATCGTTTTAAAATTTTATTAATATTTTATACCCTTTAGGCTCCGGACTCTGAAATTGTGTTTGATTGTATAGGGAGATTATAAAAGAAAATGAGATTTTTGGAGATACCAAATACATCATACAATATTTGAGATCTTAAATATGTCATGATACTTTTATATTTATTATTAAGAGTATGTTATTATGAGTATAATTAGATATTTAAAATTTTGATATTTTATTTATAGAAATGGATGATTTTTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTT-GCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGATTTGCA</genome_strand>
        <mrna_strand>ATTC-GGCACG-AGGAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCCAAATGTTGAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTATAAACCTCAAGGTTCAATGGTTGTTATG.....................................................................................................................GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTCAGGCATTCAAAGCCCC---A---AA--ACTTAA-T---TAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGGCCAATTTGGTGAATAAGGTCAAGCATAATGTTAATTCCAAAACTTTGTTGTTAAAAGGGTAATTAATAAAATTTCCTTATTTAGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355214" ref_strand="+" ref_description="SGN-E355214 [cTOS-18-A17]">
      <seq>aaaccccttttacaccaatgggattatttagttcaataacaccaatattaacacttggttctttgtcaaaaagatggttaattcctggttggagacttggttggtttgtcattaatgatcctaattgcattttcaaatcccctaagataattgaacgtattaataactattgtgacttatgtgcaagtcccacaactttcatacaggcagcagtccccaaaattattgaaaataccaaagaggatttcttcaaaaatacactcaaaatgttaaagaaaaattcagatatatgttatgaaaagatacttgaaattccatgcctaaattgcccttacaaacctcaaggttcaatggttgttatggtgaatcttaatataattctcctccaaaatataattgatgatatggacttctgttttaagcttgctaaggaggaatatgtcattttacttcctggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgccttaggcattccaagccccaaaatttaattaattaattaactaattaattaatgctaattttctggatttttcattttcataattcttgccaatttggtgaataaattcaagcataatgttaattccaatactttgttgttatttaaataattaaataaatttccttatttagtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="65317" stop="61486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65017" g_stop="64872" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64871" i_stop="64278" i_length="594">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64277" g_stop="64218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="206" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63747" g_stop="63592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="362" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63474" g_stop="63381" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="456" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62059" g_stop="61782" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="734" r_length="278" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E355214" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65017" e_stop="64872"/>
          <exon e_start="64277" e_stop="64218"/>
          <exon e_start="63747" e_stop="63592"/>
          <exon e_start="63474" e_stop="63381"/>
          <exon e_start="62059" e_stop="61782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCTTTTACACCAATGGGATTATTTAGTTCAATAACACCAATATTAACACTTGGTTCTTTGTCAAAAAGATGGTTAATTCCTGGTTGGAGACTTGGTTGGTTTGTCATTAATGATCCTAATTGCATTTTCAAATCCCCTAAGGTATGTTTCTAAATTAATTAGTGAAATTTTGTTGCTTATTTAGAGGCGGTGCTAAAAAAATTATGTATTTATTTGTTTGCGCTTCCCTGAGTAACGTTAATCCAAACTTGTGTTTGTCTTAAGAAATTCATCTATTTTACATCTCGAATGAATAAATAGGTGTGGGGTGGCAGGGAGACTACGAGCCCTCTCTCGACTCTCCTTAGTTGTTATCGGATTGACCACCACAAATCTCTTCATTCCTCTTCGCCATGCTCGGTGAAATTATATTTTTAGAGCGAAATAAAGTGACAAGGAAACGAGGAATCCTATTCATGAAAGCTCCTTGTTAAGATTGAGGGGGAAATTCAAAGGATATTCTTTTCATAAAAATTAAAAAAGAATACAAAAAGTTTTTTCAATTAAAACGTTATTTAATTATTAATATGTATAAGTTATTTATTTAAAATTCAATAACTTAAAACGATTAAAATCTTAAATATTTGAGTGACAAATTAAAGACAAATTTATCATAGTTAATTCATGTTTTATATATTGCTGTACTTATTTATATGTGATACTAATTATCACAAGTTTTTTTTTTTCATTTCTCAGATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAGGTAAATCGTAGTCTATATATCGTCAGTATAAATAATATTTTTATACGACATCAATTCATTCAAGTGATATATATAAATAAGTCTCTTTACCATATAAAATTTGAACTATTGAACACATATAAGATATGTTATAAGCTACAACAAGTATGGATAACTTGATGGTGTAAAATTATTTATTCCGATAATATATATATATATATTACGTAAACTCATAAAAAAAATCTACGTTTCAGAGTTTCAAAATTCACAACTCTTGAATTTTGAACGCTAGCTAGAACAATAACTAATTTTCAAATATAAGATAAAAAGTAGACATATGACATTATTAATTTCTATCTATCATATCCAAAACACGTTGTATCGATTGTAATAGATAACCTATATTATATAGATTAAACGTTAAACTATATTGACAGTGTATATAATTTATTTTTATTTTTATTTTTGTAAAAATTATTTTGATTTTGCAGGCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATGGTAAATTCTTTAACTTCCACAAAACTTTTAATTTCATACAATTTGGTCCCTTCTTTTTTGCTTTTATTTCTTTTTAGTCCTATTCTTTTAAATTTTAATTTTCTATATGATGAATAGGTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTGGTTAGTACAACAACTCAGAATATAAAGATATTTTACTTTTATTTTTTAATTAATATAAATATATATATATATATATATATATATATATTACTCAAAATATGAATATGAAATTGCAGAGTCCGGAGCCTAAAGGGTATAAAATATTAACAAAATTCCAAAAATATTAACCAAAATGACAAAATCGCTGAAACAACAGCGATTTCCTCCGCCGGAAACAACGATTTTGCAAAATGTGATTTTTTTTTTAAAAAAAAAATTAAGAAAATCTCTGCCTAGGCAACAATTTTCTTGAATGATTTTTAAAAAAAAATGAAAATCGCTGTCCATGGCAGCGATTTTCTTGAAATTTTTTTTTAAAAAAAAAATAATAAAAATCGCTGCCTAAAAAAAATTTTCTAAAAGAAAAAAGAATCACATTTAAAAGCTTTTTTGGGACGGAGGAAATTGCTGTTGTTCCAGCGATTTTGCCGTTTTGATTAATATAAAATTTTATATATCGTTTTAAAATTTTATTAATATTTTATACCCTTTAGGCTCCGGACTCTGAAATTGTGTTTGATTGTATAGGGAGATTATAAAAGAAAATGAGATTTTTGGAGATACCAAATACATCATACAATATTTGAGATCTTAAATATGTCATGATACTTTTATATTTATTATTAAGAGTATGTTATTATGAGTATAATTAGATATTTAAAATTTTGATATTTTATTTATAGAAATGGATGATTTTTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGAT</genome_strand>
        <mrna_strand>AAACCCCTTTTACACCAATGGGATTATTTAGTTCAATAACACCAATATTAACACTTGGTTCTTTGTCAAAAAGATGGTTAATTCCTGGTTGGAGACTTGGTTGGTTTGTCATTAATGATCCTAATTGCATTTTCAAATCCCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATG.....................................................................................................................GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAAATAAATTTCCTTATTTAGTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350264" ref_strand="+" ref_description="SGN-E350264 [cTOS-4-P3]">
      <seq>aaaccccttttacaccaatgggattatttagttcaataacaccaatattaacacttggttctttgtcaaaaagatggttaattcctggttggagacttggttggtttgtcattaatgatcctaattgcattttcaaatcccctaagataattgaacgtattaataactattgtgacttatgtgcaagtcccacaactttcatacaggcagcagtccccaaaattattgaaaataccaaagaggatttcttcaaaaatacactcaaaatgttaaagaaaaattcagatatatgttatgaaaagatacttgaaattccatgcctaaattgcccttacaaacctcaaggttcaatggttgttatggtgaatcttaatataattctcctccaaaatataattgatgatatggacttctgttttaagcttgctaaggaggaatatgtcattttacttcctggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgccttangcattccaagccccaaaatttaattaattaattaactaattaattaatgctaatttttctggatttttcattttcataattctttgcaattttggtgaataaattcaagcataatgttaattccaatactttgttgttatttaaataattaataaattttcttatttagtcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="65317" stop="61486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65017" g_stop="64872" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64871" i_stop="64278" i_length="594">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64277" g_stop="64218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="206" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63747" g_stop="63592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="362" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63474" g_stop="63381" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="456" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62059" g_stop="61783" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="734" r_length="278" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E350264" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65017" e_stop="64872"/>
          <exon e_start="64277" e_stop="64218"/>
          <exon e_start="63747" e_stop="63592"/>
          <exon e_start="63474" e_stop="63381"/>
          <exon e_start="62059" e_stop="61783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCTTTTACACCAATGGGATTATTTAGTTCAATAACACCAATATTAACACTTGGTTCTTTGTCAAAAAGATGGTTAATTCCTGGTTGGAGACTTGGTTGGTTTGTCATTAATGATCCTAATTGCATTTTCAAATCCCCTAAGGTATGTTTCTAAATTAATTAGTGAAATTTTGTTGCTTATTTAGAGGCGGTGCTAAAAAAATTATGTATTTATTTGTTTGCGCTTCCCTGAGTAACGTTAATCCAAACTTGTGTTTGTCTTAAGAAATTCATCTATTTTACATCTCGAATGAATAAATAGGTGTGGGGTGGCAGGGAGACTACGAGCCCTCTCTCGACTCTCCTTAGTTGTTATCGGATTGACCACCACAAATCTCTTCATTCCTCTTCGCCATGCTCGGTGAAATTATATTTTTAGAGCGAAATAAAGTGACAAGGAAACGAGGAATCCTATTCATGAAAGCTCCTTGTTAAGATTGAGGGGGAAATTCAAAGGATATTCTTTTCATAAAAATTAAAAAAGAATACAAAAAGTTTTTTCAATTAAAACGTTATTTAATTATTAATATGTATAAGTTATTTATTTAAAATTCAATAACTTAAAACGATTAAAATCTTAAATATTTGAGTGACAAATTAAAGACAAATTTATCATAGTTAATTCATGTTTTATATATTGCTGTACTTATTTATATGTGATACTAATTATCACAAGTTTTTTTTTTTCATTTCTCAGATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAGGTAAATCGTAGTCTATATATCGTCAGTATAAATAATATTTTTATACGACATCAATTCATTCAAGTGATATATATAAATAAGTCTCTTTACCATATAAAATTTGAACTATTGAACACATATAAGATATGTTATAAGCTACAACAAGTATGGATAACTTGATGGTGTAAAATTATTTATTCCGATAATATATATATATATATTACGTAAACTCATAAAAAAAATCTACGTTTCAGAGTTTCAAAATTCACAACTCTTGAATTTTGAACGCTAGCTAGAACAATAACTAATTTTCAAATATAAGATAAAAAGTAGACATATGACATTATTAATTTCTATCTATCATATCCAAAACACGTTGTATCGATTGTAATAGATAACCTATATTATATAGATTAAACGTTAAACTATATTGACAGTGTATATAATTTATTTTTATTTTTATTTTTGTAAAAATTATTTTGATTTTGCAGGCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATGGTAAATTCTTTAACTTCCACAAAACTTTTAATTTCATACAATTTGGTCCCTTCTTTTTTGCTTTTATTTCTTTTTAGTCCTATTCTTTTAAATTTTAATTTTCTATATGATGAATAGGTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTGGTTAGTACAACAACTCAGAATATAAAGATATTTTACTTTTATTTTTTAATTAATATAAATATATATATATATATATATATATATATATTACTCAAAATATGAATATGAAATTGCAGAGTCCGGAGCCTAAAGGGTATAAAATATTAACAAAATTCCAAAAATATTAACCAAAATGACAAAATCGCTGAAACAACAGCGATTTCCTCCGCCGGAAACAACGATTTTGCAAAATGTGATTTTTTTTTTAAAAAAAAAATTAAGAAAATCTCTGCCTAGGCAACAATTTTCTTGAATGATTTTTAAAAAAAAATGAAAATCGCTGTCCATGGCAGCGATTTTCTTGAAATTTTTTTTTAAAAAAAAAATAATAAAAATCGCTGCCTAAAAAAAATTTTCTAAAAGAAAAAAGAATCACATTTAAAAGCTTTTTTGGGACGGAGGAAATTGCTGTTGTTCCAGCGATTTTGCCGTTTTGATTAATATAAAATTTTATATATCGTTTTAAAATTTTATTAATATTTTATACCCTTTAGGCTCCGGACTCTGAAATTGTGTTTGATTGTATAGGGAGATTATAAAAGAAAATGAGATTTTTGGAGATACCAAATACATCATACAATATTTGAGATCTTAAATATGTCATGATACTTTTATATTTATTATTAAGAGTATGTTATTATGAGTATAATTAGATATTTAAAATTTTGATATTTTATTTATAGAAATGGATGATTTTTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAA-TTTTCTGGATTTTTCATTTTCATAATTC-TTGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGA</genome_strand>
        <mrna_strand>AAACCCCTTTTACACCAATGGGATTATTTAGTTCAATAACACCAATATTAACACTTGGTTCTTTGTCAAAAAGATGGTTAATTCCTGGTTGGAGACTTGGTTGGTTTGTCATTAATGATCCTAATTGCATTTTCAAATCCCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATG.....................................................................................................................GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTANGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTTCTGGATTTTTCATTTTCATAATTCTTTGCAATTTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAAT-AAATTTTCTTATTTAGTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352446" ref_strand="+" ref_description="SGN-E352446 [cTOS-9-P16]">
      <seq>ttctatataaatcctaccgtagactagaaaatagatttttttttaaaaaaaatatatagaaattgtaaatgatacctttagatgtgagttcacattaaattctttgttttgttcaaagcttatgttaaatctaaccagtatagtttgataaatatttgacaaaatataatcctaattgtttatatacatatgtttaattaaacatgaaatttatgaaaaaagatcgacttttaacgtatagtaagactatcaatcttataatcactacgacagaaagcatgtcactaaaataaacgtagaaacttgaagttaataaatatttacatatatagagtgatagggaaaaatattatttttcctttaaaaaaagaaataaattcgaaacaatatcgcataaaatgaatcaaaataataagaatggacttgtactaaaatgtggtgtaaactacttatatttgtaaactatttacaatatttgtgcatgataaattaaattttccttttgttatgcaatcaatttaaactaattggcctaattttattattgtttattaatacaattttattttattttttaaattttaggaactgctgttggattaaaaaattggatcagaatcacatttgcagttgagtcatcttttcttgaagaaggattaaaaagactcaaatctttttgccttaggcattccaagccccaaaatttaattaattaattaactaattaattaatgctaattttctggattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="62945" stop="61593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62645" g_stop="61893" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E352446" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62645" e_stop="61893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTT</genome_strand>
        <mrna_strand>TTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTT-AAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331219" ref_strand="+" ref_description="SGN-E331219 [cTOD-6-O11]">
      <seq>attttctcttcgttgcatcagagagcggcggccggcggtgaagttttgctggtattgattatagtaaaacacatgggattgccgagatttaaacgtcctgtagggactagcgaaccaagttcaaatctttatgtggccgattgtggacctgcagttggactaacttcggacacaattgaagccggatttggtgcatatggtcaagttaagggagtccatctcgctgatgaaagtggcactagagttattgtgtcttatcatgaagaaaagtctgcagaatctgccctgacggcgttgaatagacgagcatgtcctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="73997" stop="72331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73697" g_stop="73647" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73646" i_stop="72900" i_length="747">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72899" g_stop="72631" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="320" r_length="269" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E331219" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73697" e_stop="73647"/>
          <exon e_start="72899" e_stop="72631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTTCGTTGCAACAGAGAGCGGCGGCCGGCGGTGAAGTTTTGCTGGTAAGATTTCTCTTTTCTTCTTTTATCATAAAGAATCAATGGAATTGCTATTTAATTCAGAAAATGATGTTATTTTTAAAATATAAATAAAAATGACGAGACCAAATTAATATGTAAATATGGAGTTTGCAAATTCTTGTTCTTAAGATTGTTTCATATTCAGGTAGGAATGTTCTTAAGGAATTGAATTTGAAGGGTCTAATTAGTTTTTAGGGAGGTAGGATTTCTCCGTATATATACTGGGTCAGAGGCGGATTCAGGATTTGAAGTTTTCGTTATTGTATATCAGTTTGAGCAAAAGCTATTGGGCTCCCGTGAACCTTTATAGCACTCTGTATGTATTCTAGCTAAATGAAGATGCAAGAATGGTGCTTTCTTGATTTAGCATGAAGTTTGAGGTGATTTCTCAGATTGTCACTCGACTAATAGTTGTTATCTTACAAAGTTACTATCTTTGTTGAAAAAAAAAATTGGAATCAAGAAGAAGGGTGAATTATTTACCTTTCTGAGATGATAAATATTAGTTGAGCGTGTAAGAAATCAACCCCGTGAAATTTTTAAGCTTAAGATGTAGATTAGTTCTCGTTTCGTGGTGAATATTGGTGAGCTTGCTAAGTAGTAGAGAGATAGTTGTAGTGATGTGATACAAGGTTATGCTTCGTTGTTCGACTATCAAGGATCTATGTTTGTCTGATACATGAGTAACTTCTATGTGGTGAGGTAAAGCCCCAAAATTTCTGGTTGTAGGTATTGATTATAGTAAAACACATGGGATTGCCGAGATTTAAACGTCCTGTAGGGACTAGCGAACCAAGTTCAAATCTTTATGTGGCCAATTGTGGACCTGCAGTTGGACTAACTTTGGACACAATTGAAGCCGTATTTGGTGCATATGGTCAAGTTAAGGGAGTCCATCTCGCTGATGAAAGTGGCACTAGAGTTATTGTGTCTTATCATGAAGAAAAGTCTGCAGAATCTGCCCTGACGGCGTTGAATAGACGAGCATGTCCTGAGCT</genome_strand>
        <mrna_strand>ATTTTCTCTTCGTTGCATCAGAGAGCGGCGGCCGGCGGTGAAGTTTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGATTATAGTAAAACACATGGGATTGCCGAGATTTAAACGTCCTGTAGGGACTAGCGAACCAAGTTCAAATCTTTATGTGGCCGATTGTGGACCTGCAGTTGGACTAACTTCGGACACAATTGAAGCCGGATTTGGTGCATATGGTCAAGTTAAGGGAGTCCATCTCGCTGATGAAAGTGGCACTAGAGTTATTGTGTCTTATCATGAAGAAAAGTCTGCAGAATCTGCCCTGACGGCGTTGAATAGACGAGCATGTCCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303007" ref_strand="-" ref_description="SGN-E303007 [cLEW-26-C20]">
      <seq>cccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaagaaatttaagttctttttttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78393" stop="6937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78093" g_stop="77994" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77914" g_stop="77503" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="512" r_length="412" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77502" i_stop="76335" i_length="1168">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76334" g_stop="76291" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="556" r_length="44" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E303007" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303007" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78093" e_stop="77994"/>
          <exon e_start="77914" e_stop="77503"/>
          <exon e_start="76334" e_stop="76291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTTCTTTTGAATGTCTGAATGTGCCAAATTTTTGGTGCATTACTCCTGTTTAATTACACAATCACATGAAGTAGCTTTTTCTTAATGTCTACAGTAGATCGATCAACACTTTGTGGCATAAATTCATTTTAAACCTGCTGGTCATAGTATTGTAAACAAACATAGTTCCGGACGTCCGTCAAGACCCTAGGCTATGCATTCGATTGGCCTTCACGGCTAGTCCGACCCATTTTTAAGGTCTAACGAGCTCCGAAGCGAGCATACCCTCCATTTCGACCATTTTTCTTTTTGTATAGCAAATCATTTTTTGGGTGATCCGAATTTTGACATTAAAAATTCCAATTTTTTTTGTGGACGTACGTCAAGACCTTGGTTATGCAGCCAGTTGGCCATCACTTCCACTCCGAACCATTTTCAAGGTCAAACGAGCCCCAAAGCGCGCATACCCCTATTTCGACGATTTTCGAGTGCTATAACAAACAATTTTTTGGGTGATTTGGATTCCGACTTAAAAAATGTAAAATTTTTTTATGAAGGTCCTTCAAGACCTTGGTTGTGCCTGTTGGCCATCACGGCCAGTCCGACACATTTTCGAGGCCAAACGAGCTCTGAAGCGCTCATACCCCCAATTTAGACAATTTTCGTGTGCTATAGCAAACCATTTTTTGGGTCATCCGGATGTCAAAAATTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCAGCCAGTTGGCCATCACGGCCAGTCCGACCCATTTTGAAGGTCAAACGAGCCCCAAAGCGCGCATACCCATATTTCGACGATTTTCGTGTGCAATAGCAAACCATTTTTTGGGTGATTCGGATTCCGACGTCAAAAATCTCAAAAGTTTTTGTGGAGGTCCTTCAATTGGCAGTGCAGCCGGTTGGCCATCACGGCCAGTCCGACCCATTTTCAAGGTCAAACGAGCCCTGAAGCGCGCATACCCCCATTTTCGACGATTTTCGTGTGCTATAGCAAATAATTTTTTGGGTGATCCGAATTCTGACGTCAAAAATGTTAAACTTTTTTGTGGATGTCCGTCAAAACCTTGACTATGCAACCGGTTGGCACTCACGACCAGTCCGACCCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGAAATTTAAGTTCTTTTTTTCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377045" ref_strand="+" ref_description="SGN-E377045 [TUS-20-O13](-)">
      <seq>ttttgaaagtcaacaaggccccagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccccgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcccctttgggtggactcaaaaaaaaaagaaatccctacgttgaaggtggagatgctggtaaccccgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttttaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaaaatatttaagttctttttttcttcttttgaatgtctgaatgtgccaaatttttggtgccttactcctgttttattttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78551" stop="77136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78251" g_stop="78188" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="167" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77914" g_stop="77454" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="628" r_length="461" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="661"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E377045" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78251" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTTCTTTTGAATGTCTGAATGTGCCAAATTTTTGGTGCATTACTCCTGTTTA</genome_strand>
        <mrna_strand>TTTTGAAAGTCAACAAGGCCCCAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCCCGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCCCCTTTGGGTGGACTCAAAAAAAAAAGAAATCCCTACGTTGAAGGTGGAGATGCTGGTAACCCCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTTTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAAATATTTAAGTTCTTTTTTTCTTCTTTTGAATGTCTGAATGTGCCAAATTTTTGGTGCCTTACTCCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376060" ref_strand="+" ref_description="SGN-E376060 [TUS-40-K8](-)">
      <seq>atacctaaaaagtggttaggaaattgattttcaaaaagaggttacggaaaacttgccaagcagagaattcctttaaccgacaactttgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttttaggcatttttagtgatcaacagttcagaattttttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtttctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaagatatttaagttcttttttttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78390" stop="62707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78090" g_stop="77994" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77914" g_stop="77479" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="533" r_length="434" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E376060" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78090" e_stop="77994"/>
          <exon e_start="77914" e_stop="77479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTAAAGAGTG-TTAGGGAATTGATCTAC-AAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTTCTTTTGAATGTCTGAATGTGCCAA</genome_strand>
        <mrna_strand>ATACCTAAAAAGTGGTTAGGAAATTGATTTTCAAAAAGAGGTTACGGAAAACTTGCCAAGCAGAGAATTCCTTTAACCGACAACTTTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTTTAGGCATTTTTAGTGATCAACAGTTCAGAATTTTTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTTTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATTTAAGTTCTTTTTTT-TT-TAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729993" ref_strand="+" ref_description="SGN-E729993 [LA22CH06]">
      <seq>aacccttttcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacatttttttggttttgatagccccagtctctatcgnattgggttggatttttgaattatgttcatttcggttcaaagatatctaagttctttttttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80636" stop="77202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80336" g_stop="80312" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="195" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="293" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="351" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="431" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="534" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77493" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="954" r_length="420" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E729993" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80336" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTTCTTTTGAATG</genome_strand>
        <mrna_strand>AACCCTTTTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTTTTTTGGTTTTGATAGCCCCAGTCTCTATCGNATTGGGTTGGATTTTTGAA-TTATGTTCATTTCGG-TTCAAAGATATCTAAGTTCTTTTTTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551718" ref_strand="+" ref_description="SGN-E551718 [cTSB-1-J7]">
      <seq>acgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaagatatctaagttctttttttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79058" stop="77203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78758" g_stop="78706" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="133" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="236" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77914" g_stop="77503" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="648" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="662"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E551718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78758" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</genome_strand>
        <mrna_strand>ACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349949" ref_strand="-" ref_description="SGN-E349949 [cTOS-3-J22]">
      <seq>cttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaagatatctaagttctttttttcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78397" stop="77203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78203" g_stop="78188" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="119" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77914" g_stop="77503" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="531" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="554"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E349949" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349949" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78203" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</genome_strand>
        <mrna_strand>CTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356976" ref_strand="-" ref_description="SGN-E356976 [cTOS-22-N22]">
      <seq>cttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaagatatctaagttctttttttcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78397" stop="77203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78203" g_stop="78188" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="119" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77914" g_stop="77503" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="531" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="554"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E356976" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78203" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</genome_strand>
        <mrna_strand>CTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309257" ref_strand="+" ref_description="SGN-E309257 [cLEY-22-C16]">
      <seq>atgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatttcggtttcaaagatatctaagttctttttttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78051" stop="77203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77751" g_stop="77503" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="250" polyA_stop="270"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E309257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77751" e_stop="77503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</genome_strand>
        <mrna_strand>ATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293218" ref_strand="+" ref_description="SGN-E293218 [cLET-12-B15]">
      <seq>tttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatctcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgcgttggatttttgaatttatgttcatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78321" stop="77234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78021" g_stop="77994" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77914" g_stop="77534" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="409" r_length="381" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E293218" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78021" e_stop="77994"/>
          <exon e_start="77914" e_stop="77534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCG</genome_strand>
        <mrna_strand>TTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATCTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGCGTTGGATTTTTGAATTTATGTTCATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212222" ref_strand="+" ref_description="SGN-E212222 [cLEC-75-C2]">
      <seq>aaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatcgtattgtgttggatttttgaatttatgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79345" stop="77237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79045" g_stop="79027" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="175" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="255" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="358" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77537" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="736" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E212222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79045" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATT</genome_strand>
        <mrna_strand>AAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212234" ref_strand="+" ref_description="SGN-E212234 [cLEC-75-B1]">
      <seq>aaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcangaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttcccattgagatgttatttttgcttatgatagtatacgacattattttttgttttgatagccccagtctctatcgtattgtgtgggattttgaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79345" stop="77244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79045" g_stop="79027" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="175" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="255" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="358" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77544" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="729" r_length="371" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E212234" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79045" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTA-TTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTAT</genome_strand>
        <mrna_strand>AAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCANGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCCATTGAGATGTTATTTTTGCTTATGATAGTATACGACATTATTTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTGGGA-TTTTGAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553216" ref_strand="+" ref_description="SGN-E553216 [cTSB-2-P8]">
      <seq>gccattctcttcacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccccagtctctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="291" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="349" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="532" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77570" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="877" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E553216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATC</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552112" ref_strand="+" ref_description="SGN-E552112 [cTSB-2-N8]">
      <seq>gccattctcttcacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatttttgttttgatagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="291" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="349" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="532" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77581" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="866" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E552112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCC</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318460" ref_strand="-" ref_description="SGN-E318460 [cTOB-10-F24]">
      <seq>tttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttatccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatgatagtatacgacattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="78552" stop="77297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78252" g_stop="78188" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="168" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77914" g_stop="77597" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="486" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E318460" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318460" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78252" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATT</genome_strand>
        <mrna_strand>TTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTATCCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290895" ref_strand="+" ref_description="SGN-E290895 [cLET-10-N9]">
      <seq>gaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttctttcatttgaaatgttattttgctttatgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79378" stop="77311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79078" g_stop="79027" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="150" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="208" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="391" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77611" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="695" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E290895" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79078" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAG</genome_strand>
        <mrna_strand>GAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTTCATTTGAAATGTTATTTTGCTTTATGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721906" ref_strand="+" ref_description="SGN-E721906 [FC15CF01]">
      <seq>gggcgaattggcggccaatcggccgaattgctcttgccctcccgccgataagagccattctcttcaacaatttcaagagatgggtgacccaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80663" stop="77315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80358" g_stop="80312" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="77" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="247" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="345" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="403" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="483" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="586" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77615" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="886" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E721906" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80358" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATG</genome_strand>
        <mrna_strand>CTCTTGCCCTCCCGCCGATAAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGACCCACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726314" ref_strand="+" ref_description="SGN-E726314 [LA11BH06]">
      <seq>tttcattctctcttgccctcccgccgatcagagccattctcttctgcaagtttcaagagatgggtgaaacaccagttccagagtctgttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcgagaacttgaatctgctaagaataataatgctgagaacaggaaattgatctacgacagggcaaagctgtatgcaaaggagtatgcataacaggacaaggaattgatccgtttgaaacgtgaggctaaattgaaaggtggtttctatgtggatcctgaggcgaagttgttgtttatcatcataatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggataccctaacctaaagagtgttagggaattgatctacaaaagaggttacggagaacttgacaagcagagaattcctttatccgacaactctgtcattgagcacggattgggcgaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttggggtggactcactaagaagagaaatcactacgttgaatgtggagatgctggtatccgcaagaacttcattagcgaacttatctcgaggatgacctatagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcctccatttgaaaagttattttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80667" stop="77319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80367" g_stop="80312" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="227" r_length="170" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="325" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="383" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="566" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77619" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="863" r_length="297" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E726314" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80367" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAA-TTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTT-GGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTT</genome_strand>
        <mrna_strand>TTTCATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCTGCAAGTTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCTGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCGAGAACTTGAATCTGCTAAGAATAATAATGCTGAGAACAGGAAATTGATCTACGACAGGGCAAAGCTGTATGCAAAGGAGTATGCATAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAAATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCGAAGTTGTTGTTTATCATCATAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................ATACCCTAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAGAACTTGACAAGCAGAGAATTCCTTTATCCGACAACTCTGTCATTGAGCAC...............................................................................GGATTGGGCGAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGGTGGACTCACTAAGAAGAGAAATCACTACGTTGAATGTGGAGATGCTGGTATCCGCAAGAACTTCATTAGCGAACTTATCTCGAGGATGACCTATAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCCTCCATTTGAAAAGTTATTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704205" ref_strand="+" ref_description="SGN-E704205 [FA23CE11]">
      <seq>aacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcacgaggatgaactacagtgcctggaattttgttttctaggcatttttagtgatcaacagttcagaatttcttccatttgagatgttattttgcccatcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="182" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="280" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="338" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="418" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="521" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77623" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="813" r_length="292" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E704205" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTT</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCACGAGGATGAACTACAGTGCCTGGAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693121" ref_strand="+" ref_description="SGN-E693121 [LH_Ea10H23]">
      <seq>ccctttctcttcaacatttcaagagatgggtgaaacaccagttcctgagtcaggtttgaagaagcagaagaggagtggggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtacgccgaacaggacaaggaattgatccgtttgagacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcaggatacgcggtattaacgctatgcccccgcagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcagcaaagccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaccagaggttatggaaagcttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacgacttcctatggccattccagctgaaggcacctttgggtggactctagaagaagagaaatcactacgttgacggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactatagtgcctgaaattttgttttctaggcatttttagtgatcaacagttcagaatttcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="193" r_length="170" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="291" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="349" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="532" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77639" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="808" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E693121" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCA</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCTGAGTCAGGTTTGAAGAAGCAGAAGAGGAGTGGGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTACGCCGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAGACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGGATACGCGG..................................................................................TATTAACGCTATGCCCCCGCAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAGCAAAGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACACCAGAGGTTATGGAAAGCTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACGACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCTAGAAGAAGAGAAATCACTACGTTGACGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTATAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717646" ref_strand="+" ref_description="SGN-E717646 [FC02BD01]">
      <seq>aatcggccgaattggccgcatttaggtcacagttacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctaggcatttttagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80689" stop="77361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80374" g_stop="80312" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="88" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="258" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="356" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="414" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="494" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="597" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77661" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="851" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E717646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80374" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGAT</genome_strand>
        <mrna_strand>GTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724811" ref_strand="+" ref_description="SGN-E724811 [FC25AH09]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatcaggaggatgaactagagtgcctgaaattttgttttctagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80668" stop="77374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80361" g_stop="80312" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="93" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="263" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="361" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="419" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="499" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="602" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77674" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="843" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E724811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80361" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGG</genome_strand>
        <mrna_strand>TCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326050" ref_strand="+" ref_description="SGN-E326050 [cTOC-16-G13]">
      <seq>aacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttncagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgagaacttcattaacgaacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="182" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="280" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="338" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="418" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="521" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77714" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="722" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E326050" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATC</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTNCAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692954" ref_strand="+" ref_description="SGN-E692954 [LH_Ea10A24]">
      <seq>ttcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagtgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtacgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcaggatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaagccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttatggaaagcttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagaagaagagaaatcactacgttgaaggtggagatgctggtaaccgcgaagaacttcattaacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="188" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="286" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="344" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="424" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="527" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77720" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="723" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E692954" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCG-AGAACTTCATTAACGAA</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGTGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTACGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGGATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAAGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTATGGAAAGCTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAAGAACTTCATTAACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298636" ref_strand="+" ref_description="SGN-E298636 [cLET-44-A6]">
      <seq>aacagggcaaagctgtagttataggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactcaagacgaagagaaatcactacgttgaaagtggagatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79365" stop="77446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79065" g_stop="79027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="137" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="195" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="275" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="378" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77746" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="547" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E298636" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79065" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTG</genome_strand>
        <mrna_strand>AACAGGGCAAAGCTGTAGTTATAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGACGAAGAGAAATCACTACGTTGAAAGTGGAGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721065" ref_strand="+" ref_description="SGN-E721065 [FC12CF12]">
      <seq>tcggccgaattcccatggggatccgacccttaaatatatttgccgcatttaggtcacagttacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80708" stop="77485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80393" g_stop="80312" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="115" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="285" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="383" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="441" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="521" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="624" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77785" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="754" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E721065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80393" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTTGCCGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCA</genome_strand>
        <mrna_strand>ATATATTTGCCGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345890" ref_strand="+" ref_description="SGN-E345890 [cTOF-24-K24]">
      <seq>tcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccagctgaaggcacctttgggtggactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="187" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="285" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="343" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="423" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="526" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77785" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="656" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E345890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCA</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345962" ref_strand="+" ref_description="SGN-E345962 [cTOF-24-N14]">
      <seq>ttctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaacaggccaacaacttcctatggccattccagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80631" stop="77507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80331" g_stop="80312" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="190" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="288" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="346" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="426" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="529" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77807" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="636" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E345962" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80331" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTG</genome_strand>
        <mrna_strand>TTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAA-CAGGCCAACAACTTCCTATGGCCATTCCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327326" ref_strand="+" ref_description="SGN-E327326 [cTOC-19-F22]">
      <seq>aacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaagcaggccaacaacttcctatggccattccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="182" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="280" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="338" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="418" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="521" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77810" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="626" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E327326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAG</genome_strand>
        <mrna_strand>AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377046" ref_strand="+" ref_description="SGN-E377046 [TUS-20-O13]">
      <seq>cgcatttaggtcacagttacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtcgggcccagcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80683" stop="77541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80383" g_stop="80312" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="242" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="340" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="398" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="478" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="581" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77841" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="655" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E377046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80383" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAA</genome_strand>
        <mrna_strand>CGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273591" ref_strand="+" ref_description="SGN-E273591 [cLEN-6-A3]">
      <seq>caatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaatttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagacctcgtccacgagatcatgactgtcgggcccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79501" stop="77546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79209" g_stop="79027" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="278" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="336" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="416" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="519" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77846" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="588" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E273591" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79209" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGC</genome_strand>
        <mrna_strand>CAATTTC--A-AGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAATTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTCGTCCACGAGATCATGACTGTCGGGCCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703882" ref_strand="+" ref_description="SGN-E703882 [FA22CH11]">
      <seq>cgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatcctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaaaaccttgtccaccagatcatgactgtcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80646" stop="77552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80346" g_stop="80312" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="205" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="303" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="361" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="441" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="545" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77852" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="608" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E703882" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80346" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGAT-CTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGG</genome_strand>
        <mrna_strand>CGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAAACCTTGTCCACCAGATCATGACTGTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296468" ref_strand="+" ref_description="SGN-E296468 [cLET-19-L7]">
      <seq>gccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagaccttgtccacgagatcatgactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80645" stop="77555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80345" g_stop="80312" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="204" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="302" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="360" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="440" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="543" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77855" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="603" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E296468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80345" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTC</genome_strand>
        <mrna_strand>GCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292811" ref_strand="+" ref_description="SGN-E292811 [cLET-11-I23]">
      <seq>aggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagctgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttgtgaaagtcaacaaggccacagtgaacatgttgcatanggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctgaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="79442" stop="77579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79142" g_stop="79027" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="214" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="272" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="352" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="455" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77914" g_stop="77879" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="491" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E292811" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79142" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGAC</genome_strand>
        <mrna_strand>AGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGCTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTGTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATANGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376061" ref_strand="+" ref_description="SGN-E376061 [TUS-40-K8]">
      <seq>cacagttacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80672" stop="77583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80372" g_stop="80312" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="231" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="329" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="387" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="467" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="570" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77883" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="602" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E376061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80372" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCTGA</genome_strand>
        <mrna_strand>CACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305599" ref_strand="+" ref_description="SGN-E305599 [cLEX-14-K12]">
      <seq>ccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgagcagggattgggcaaacatggaattatctgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80647" stop="77585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80347" g_stop="80312" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="206" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="304" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="362" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="442" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77994" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="545" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77914" g_stop="77885" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="575" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E305599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80347" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77994"/>
          <exon e_start="77914" e_stop="77885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGTAAGTTTCTGTCAGTTCATCTCCGGATTTAGTGTTTCATGGTGTTGACAACTCAAGAGTTCTCGGTGTATGTTTTCAGGGATTGGGCAAACATGGAATTATCTGTGCT</genome_strand>
        <mrna_strand>CCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG...............................................................................GGATTGGGCAAACATGGAATTATCTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268345" ref_strand="+" ref_description="SGN-E268345 [cLEI-13-K3]">
      <seq>agccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80636" stop="77697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80336" g_stop="80312" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="195" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="293" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="351" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="431" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77997" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="531" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E268345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80336" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAG</genome_strand>
        <mrna_strand>AGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268487" ref_strand="+" ref_description="SGN-E268487 [cLEI-13-G11]">
      <seq>agccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttacggaaaacttgacaagcagagaattcctttaaccgacaactctgtcattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80636" stop="77697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80336" g_stop="80312" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="195" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="293" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="351" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="431" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="77997" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="531" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E268487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80336" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="77997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAG</genome_strand>
        <mrna_strand>AGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366478" ref_strand="+" ref_description="SGN-E366478 [cLPT-13-K9]">
      <seq>ggccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcatttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagagcttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtacgcagaacaggacaaggagttgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcaggatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaagccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaagaggttatggaaagcttgacaagcagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80645" stop="77726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80346" g_stop="80312" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="205" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="303" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="361" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="441" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="78026" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="512" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E366478" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80346" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="78026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAA</genome_strand>
        <mrna_strand>GGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCATTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAGCTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTACGCAGAACAG...................................................................................GACAAGGAGTTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGGATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAAGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTATGGAAAGCTTGACAAGCAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314379" ref_strand="+" ref_description="SGN-E314379 [cTOA-21-O9]">
      <seq>tcacagttacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80673" stop="77756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80373" g_stop="80312" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="232" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="330" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="388" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="468" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="78056" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="509" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E314379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80373" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="78056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAA</genome_strand>
        <mrna_strand>TCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285179" ref_strand="+" ref_description="SGN-E285179 [cLER-20-B23]">
      <seq>gccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaataggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcataatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80645" stop="77756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80345" g_stop="80312" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="204" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="302" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="360" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="440" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="78056" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="481" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E285179" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80345" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="78056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAA</genome_strand>
        <mrna_strand>GCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAATAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCATAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324815" ref_strand="+" ref_description="SGN-E324815 [cTOC-8-J16]">
      <seq>ttacattctctcttgccctcccgccgatcagagccattgtcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80667" stop="77757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80367" g_stop="80312" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="226" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="324" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="382" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="462" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="78057" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="502" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E324815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80367" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="78057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAA</genome_strand>
        <mrna_strand>TTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTGTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278717" ref_strand="+" ref_description="SGN-E278717 [cLER-2-G19]">
      <seq>acattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaagagtgttagggaattgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80665" stop="77761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80365" g_stop="80312" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="224" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="322" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="380" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="460" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="78061" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="496" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E278717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80365" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="78061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTA</genome_strand>
        <mrna_strand>ACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244891" ref_strand="+" ref_description="SGN-E244891 [cLEF-2-D18]">
      <seq>cgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttataatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtttttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctatggttacccaaacctaaaagagtgttagggaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80643" stop="77764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80343" g_stop="80312" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="202" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="300" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="358" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78188" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="438" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78096" g_stop="78064" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="472" r_length="34" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E244891" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80343" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78188"/>
          <exon e_start="78096" e_stop="78064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGGGTAGGTATCGCTTAATGTTCTGCTGCCCTCAAGTCTTCCTCTCTGCTGCTATTGCAAACTTGCAGTCCCTTATTTCCTTTGTATCTTGCAGTTACCCAAACCT-AAAGAGTGTTAGGGAATTGAT</genome_strand>
        <mrna_strand>CGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATAATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTTTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG...........................................................................................TTACCCAAACCTAAAAGAGTGTTAGGGAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232019" ref_strand="+" ref_description="SGN-E232019 [cLED-7-I20]">
      <seq>cgcatttaggtcacagttacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80683" stop="77890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80383" g_stop="80312" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="242" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="340" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="398" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78190" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="476" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E232019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80383" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTAT</genome_strand>
        <mrna_strand>CGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206720" ref_strand="+" ref_description="SGN-E206720 [cLEC-31-I6]">
      <seq>cattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcatagggttgaaccttacgttaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80633" stop="77891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80333" g_stop="80312" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="192" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="290" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="348" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78191" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="425" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E206720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80333" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTA</genome_strand>
        <mrna_strand>CATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265223" ref_strand="+" ref_description="SGN-E265223 [cLEI-2-F16]">
      <seq>ccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaacaaggccacagtgaacatgttgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80644" stop="77913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80344" g_stop="80312" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="203" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="359" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78213" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="414" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E265223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80344" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATA</genome_strand>
        <mrna_strand>CCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324036" ref_strand="+" ref_description="SGN-E324036 [cTOC-3-G3]">
      <seq>cacagggacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaagattttgcagctactacgtttgcgccagatctttaatggtgtctttttgaaagtcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80672" stop="77937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80372" g_stop="80312" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="231" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="329" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78706" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="387" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78267" g_stop="78237" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="418" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E324036" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80372" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78706"/>
          <exon e_start="78267" e_stop="78237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGGTAAACACAACTCCTTTCTATACCCCTCAAAGAAGACAAGTATAATTTGATGTTTGCTGCTGTATAAGCTACTCTTGATTTCCTTCTATTGTTCTGTTTGCTGAAAATTCGCTTTGAGTATGTGTTGGGGGGGTGTTATTGCTTCCCCACTTGATAGTTAAGTACATGTGTATATCCTGATGATTGGGCTGGCTTGTTACGCCAAATGTCCTATCATCAGGCAAGTTATTGTGTTGTTGTCAAGATAATTTATAATTCTTATGTTTATTCTTCTGATTCCTCTCCCCTGTTGGAAACAAAAAAAAAAATATTTCTAGGTTTCTGTATGTGTCTGTTTTGGTTAGGTCTGTTTCATGCTTTATGTAATTCCTTAAAATTGAGTTATTTTATTGTTACCTAACATTGAGCTCTTCTTCCTTTCCACATTTCTTGTGACAGATCTTTAATGGTGTCTTTTTGAAAGTCAACA</genome_strand>
        <mrna_strand>CACAGGGACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAATGGTGTCTTTTTGAAAGTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239531" ref_strand="+" ref_description="SGN-E239531 [cLED-23-A15]">
      <seq>tacattctctcttgccctcccgccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaaggtggtttctatgtggatcctgaggcaaagttgttgtttatcatcagaatacgcggtattaacgctatgcccccacagaccaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80666" stop="78433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80366" g_stop="80312" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="225" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78846" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="323" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78763" g_stop="78733" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="354" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E239531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80366" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78846"/>
          <exon e_start="78763" e_stop="78733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGGTAAGAACTATTTTGGTCTTCTTTGTCCTATAGTATGGTGAAACTATTAATACTATGGTACTCATAAAATTTGATCTTTCAGTATTAACGCTATGCCCCCACAGACCAAAAAG</genome_strand>
        <mrna_strand>TACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG..................................................................................TATTAACGCTATGCCCCCACAGACCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337438" ref_strand="+" ref_description="SGN-E337438 [cTOE-18-J24]">
      <seq>ccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaacgtgaggctagattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80644" stop="78602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80344" g_stop="80312" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="203" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78902" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="245" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E337438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80344" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAA</genome_strand>
        <mrna_strand>CCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290701" ref_strand="+" ref_description="SGN-E290701 [cLET-10-E10]">
      <seq>gccgatcagagccattctcttcaacaatttcaagagatgggtgaaacaccagttccagagtcagttttgaagaagcagaagaggagcgaggaatgggctcttgcaaagaagcaagaacttgaatctgcaaagaagaagaatgctgagaacaggaaattgatctacaacagggcaaagctgtatgcaaaggagtatgcagaacaggacaaggaattgatccgtttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="80645" stop="78619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80345" g_stop="80312" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79196" g_stop="79027" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="204" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78943" g_stop="78919" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="229" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E290701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80345" e_stop="80312"/>
          <exon e_start="79196" e_stop="79027"/>
          <exon e_start="78943" e_stop="78919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGATCAGAGCCATTCTCTTCAACAATTTCAAGGTAAATCTCCATTGAAAGTACTATTTTTCTTCTAATTATGTGGATTTTTATCAGTTTTTATACACATTTGGTGCGATTTCCTTTTTTTGAAGTTTTTTTTTATGGTGTTTTGTTGTATTTGAAGATGTAGTAGTGTAATCGGGTTCTAGTTGTGGAAACAGGTTTTTGTAGAAATGCAGGGGTTAAGCTGTGTAGAATAGATCGTTTATGGCCCAACTACTGTGTATAGCGGGAGCTTAGTGTATCGGGCTGTTGTTTTTTTTTTGGTTATGTTTTGGAGATCTGAATTAAGGAAGTGTTGTGTGTGTATTTAAGTTGTTAAGTGTTTTGAAGCCTAAAGGAAGGTTTTTTTTTTGCTGTGTTTGAAATGTTAGCAGCTGAAGGATTAGTTTAGTTGTAGTTTGGTGTATGTATTAGAGTTTTGAATGCTGAAGAATATAAAATAGTGGAAGAGTATTGAATGAACTAGTCAGTAGTTACTAATGTTGCCTTTATGTATGCGTATTCTGATTAATGAAGCTGGGATATACTGTAGGAATAGGGAGAAGTGAAGTGAAGGGTCTGTTACTTTTGCCTAGATATAGAGTGAAAGTTGATTCCTACTCTTGCAGTTGAGCTGAAGTGTGTGTGTGTTTGTTGTTGAGTATTCTAAAGCGTGATAGGTTTTTTTGAAACGTTAGCAGCCACTAAAAGATTACTTTAGTTTTAGGTAAAGCATTCGAGTTTTGAATGCTGAAAAGATTTAGAAAAAACTAGAAGAGTATAGGAAGAACTAGTCATTATCGTTGCTTTTATGCATGTGTATTCTGATCTCTATGAAGTTGGGATATTTTGGTGGAATAGGGAAACGTGAAATGAAGGGGAGTTAAAGTAAACAAAATGAGTCTGGTGTCCGGGCTATAAATTTTTTCTACCTTTTAACACAATCTGACTATATACATGTATGTGAATATCCTCCCACCACAATATTGGCATAAGGCAATGTGTTGTGCTGATAGTGTAGTAACCAGAAGTTCCGTGGGAAGATCTCTTTTTTCTGATATATGAATGGAACAGAGGAATTAATTATGGAGTTTACGTTATGTCGAGAGTTAATTTTGGTTAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGTACTATCAAACTCCGTATTTTTTGGTTAACATGCTCGTTTGATGTTAAGCTTGGTTATAAGTATTCATTTTTCTTTTCTTAGGACAAGGAATTGATCCGTTTGAAAC</genome_strand>
        <mrna_strand>GCCGATCAGAGCCATTCTCTTCAACAATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG...................................................................................GACAAGGAATTGATCCGTTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217386" ref_strand="+" ref_description="SGN-E217386 [cLEL-21-F5](-)">
      <seq>taagtatttgcagggaagcatggttgatttgtccttctcaaaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtagtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaataacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaattagttgtagctttgtaagttgttgtgtggccttcaacttttcgagttgtgtgtaatcatctatatgattgacttgacaacaatgaaggatctgggagtggcatttcatcattttgtgctaagttttgtcgatttttttaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104254" stop="103260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103954" g_stop="103561" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="406"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E217386" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103954" e_stop="103561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGTGCTAAGTTTTGTCGATTTTTTTAATAAAAA</genome_strand>
        <mrna_strand>TAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAAAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGTGCTAAGTTTTGTCGATTTTTTTAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258706" ref_strand="-" ref_description="SGN-E258706 [cLEG-50-F12]">
      <seq>gattcatggaagcaatatcaattccgcagatgnaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtagtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaataacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaattagttgtagctttgtaagttgttgtgtggccttcaacttttcgagttgtgtgtaatcatctatatgattgacttgacaacaatgaaggatctgggagtggcatttcatcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104686" stop="103297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104386" g_stop="104342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104120" g_stop="103591" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="575" r_length="530" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E258706" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258706" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104386" e_stop="104342"/>
          <exon e_start="104120" e_stop="103591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGT</genome_strand>
        <mrna_strand>GATTCATGGAAGCAATATCAATTCCGCAGATGNAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352319" ref_strand="+" ref_description="SGN-E352319 [cTOS-9-A2]">
      <seq>aaaggtgtgtatgcttacgactatggagacaccgcaggcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtagtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaataacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaattagttgtagctttgtaagttggtgtgtggccttcaacttttcgaagtgtgtgtaatcatctatatgattgacttgacaacaatgaaggatctggggagtggcatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104922" stop="103297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104622" g_stop="104520" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="202" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104120" g_stop="103608" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="716" r_length="514" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="736"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E352319" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104622" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCT-GGGAGTG</genome_strand>
        <mrna_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGGTGTGTGGCCTTCAACTTTTCGAAGTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357754" ref_strand="+" ref_description="SGN-E357754 [cTOS-24-J6]">
      <seq>aaaggtgtgtatgcttacgactatggagacaccgcaggcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtagtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaaatacatgcccccaaccccctncaatctttgatcgaataatattcgatacaattagttgtagctttgtaagttgttgtgtggccttcaacttttcgaagtgtgtgtaatcatctatatgattgacttgacaacaatgaaggatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104922" stop="103312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104622" g_stop="104520" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="202" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104120" g_stop="103612" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="711" r_length="509" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E357754" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104622" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCT-CAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGG</genome_strand>
        <mrna_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAAATACATGCCCCCAACCCCCTNCAATC-TTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAAGTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350434" ref_strand="+" ref_description="SGN-E350434 [cTOS-5-B12]">
      <seq>aaaggtgtgtatgcttacgactatggagacaccgcaggcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaagtacgtagtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaaatacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaattagttgtagctttgtaagnttgtgtgtggccttcaanctttcgagtgtgtgtatcatctatatgattgactttgacacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104922" stop="103321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104622" g_stop="104520" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="202" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104120" g_stop="103621" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="699" r_length="497" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E350434" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104622" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAA</genome_strand>
        <mrna_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAAGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAAATACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGNTTGTGTGTGGCCTTCAANCTTTCGAG-TGTGTGT-ATCATCTATATGATTGACTTTGACAC-ATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308758" ref_strand="+" ref_description="SGN-E308758 [cLEZ-11-G16]">
      <seq>gacaccgcaagcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtcgtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaataacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104895" stop="103408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104595" g_stop="104520" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="175" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104120" g_stop="103708" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="588" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E308758" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104595" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAA</genome_strand>
        <mrna_strand>GACACCGCAAGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTCGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350749" ref_strand="+" ref_description="SGN-E350749 [cTOS-7-J7]">
      <seq>aaaggtgtgtatgcttacgactatggagacaccgcaggcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtagtggaaattggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaaatacatgcccccaacccccctcatcttttgatcgaataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104922" stop="103416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104622" g_stop="104520" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="202" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104120" g_stop="103716" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="607" r_length="405" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E350749" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104622" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATT</genome_strand>
        <mrna_strand>AAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAAATTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAAATACATGCCCCCAACCCCCCTCATCTTTTGATCGAATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261297" ref_strand="+" ref_description="SGN-E261297 [cLEG-68-A4]">
      <seq>gtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattttgcaggacttgctttcccgtttatccgggagaagcttaaggggagaattaaccctcttattagagcggttgaacctacagcttgcccctcgttgaccaaaggtgtgtatgcttacgactatggagacaccgcaggcatgactcctctaatgaaaatgcctacacttgggccatgacttcctaccggatcccatccattccggggggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105489" stop="104219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105189" g_stop="105134" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105057" g_stop="104520" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="595" r_length="539" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104440" g_stop="104432" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="604" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E261297" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105189" e_stop="105134"/>
          <exon e_start="105057" e_stop="104520"/>
          <exon e_start="104440" e_stop="104432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACGAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTT-GGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCC</genome_strand>
        <mrna_strand>GTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACCAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTCTAATGAAAATGCCTACACTTGGGCCATGACTTCCTACCGGATCCCATCCATTCCG...............................................................................GGGGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257815" ref_strand="+" ref_description="SGN-E257815 [cLEG-39-A20]">
      <seq>gtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggggggttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattttgcaggacttgctttcccgtttatccgggagaagcttaaggggagaattaaccctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105489" stop="104360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105189" g_stop="105134" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105057" g_stop="104660" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="454" r_length="398" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E257815" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105189" e_stop="105134"/>
          <exon e_start="105057" e_stop="104660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTAT</genome_strand>
        <mrna_strand>GTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGGGGGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262324" ref_strand="+" ref_description="SGN-E262324 [cLEG-56-B12]">
      <seq>tcgtttgcttgcagcttatttggtctcaattgtgaggtaaatgtgtctgtagtttacgtgttcatttgcgatgagggagttcatccgccccgatctagaattttcagtgcaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattttgcaggaattgctttcccgnttatccgggagaagcttaaggggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105469" stop="104372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105169" g_stop="104672" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E262324" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105169" e_stop="104672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAAT</genome_strand>
        <mrna_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGAATTGCTTTCCCGNTTATCCGGGAGAAGCTTAAGGGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254762" ref_strand="+" ref_description="SGN-E254762 [cLEG-33-I23]">
      <seq>tcgtttgcttgcagcttatttggtctcaattgtgaggtaaatgtgtctgtagtttacgtgttcatttgcgatgagggagttcatccgccccgatctagaattttcagtgcaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattgtgcacgacttgctttcccgtttatccgggagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105469" stop="104384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105169" g_stop="104684" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E254762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105169" e_stop="104684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCT</genome_strand>
        <mrna_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTGTGCACGACTTGCTTTCCCGTTTATCCGGGAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273102" ref_strand="+" ref_description="SGN-E273102 [cLEM-24-I23]">
      <seq>ctcgtgccgattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105606" stop="104446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105315" g_stop="105134" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105057" g_stop="104746" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="494" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E273102" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105315" e_stop="105134"/>
          <exon e_start="105057" e_stop="104746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATC</genome_strand>
        <mrna_strand>CTCGTGCCGATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702936" ref_strand="+" ref_description="SGN-E702936 [FA20AD12]">
      <seq>atttttagtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttangaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107063" stop="104514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106763" g_stop="106670" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="428" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="645" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105057" g_stop="104814" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="889" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E702936" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106763" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATC</genome_strand>
        <mrna_strand>ATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTANGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723238" ref_strand="+" ref_description="SGN-E723238 [FC19DE12]">
      <seq>ggtcttctatttttcgtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcaccctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatcccttcagtccaggaagtttaggaatagctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107070" stop="104594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106771" g_stop="106670" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="436" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="653" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105057" g_stop="104894" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="817" r_length="164" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E723238" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106771" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</genome_strand>
        <mrna_strand>GGTCTTCTATTTTTCGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCACCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCCTTCAGTCCAGGAAGTTTAGGAATAGCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302488" ref_strand="+" ref_description="SGN-E302488 [cLEW-27-N22]">
      <seq>aagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105801" stop="104594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105501" g_stop="105424" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="295" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105057" g_stop="104894" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="459" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E302488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105501" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</genome_strand>
        <mrna_strand>AAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273232" ref_strand="+" ref_description="SGN-E273232 [cLEM-24-K13]">
      <seq>catcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="105798" stop="104594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105498" g_stop="105424" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="292" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105057" g_stop="104894" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="456" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E273232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105498" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</genome_strand>
        <mrna_strand>CATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391581" ref_strand="+" ref_description="SGN-E391581 [TUS-16-A8]">
      <seq>tagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107008" stop="104672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106708" g_stop="106670" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="373" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="590" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105057" g_stop="104972" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="676" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E391581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106708" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCC</genome_strand>
        <mrna_strand>TAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203792" ref_strand="+" ref_description="SGN-E203792 [cLEC-17-N17]">
      <seq>agaaatggcagtatccctcccaaatctgtttccaaaaggggatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107007" stop="104905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106707" g_stop="106670" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="372" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105205" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="518" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E203792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106707" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTA</genome_strand>
        <mrna_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205157" ref_strand="+" ref_description="SGN-E205157 [cLEC-16-B19]">
      <seq>agaaatggcagtatccctcccaaatctgtttggaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107007" stop="104911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106707" g_stop="106670" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="372" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105211" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="512" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E205157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106707" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</genome_strand>
        <mrna_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341153" ref_strand="+" ref_description="SGN-E341153 [cTOE-22-D24]">
      <seq>aaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107005" stop="104911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106705" g_stop="106670" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="370" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105211" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="510" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E341153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106705" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</genome_strand>
        <mrna_strand>AAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209879" ref_strand="+" ref_description="SGN-E209879 [cLEC-52-M12]">
      <seq>ggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgtttcctcaggcctggtacaataaaatggggaatgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107001" stop="104914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106701" g_stop="106670" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="366" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105214" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="504" r_length="138" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E209879" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106701" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTG-TTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAA</genome_strand>
        <mrna_strand>GGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212685" ref_strand="+" ref_description="SGN-E212685 [cLEC-73-G10]">
      <seq>aaaagaaaaaaatgttagactgacattttttgtcttctatttttagtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcgtcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107101" stop="105018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106801" g_stop="106670" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="466" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105318" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="499" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-E212685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106801" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACC</genome_strand>
        <mrna_strand>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCGTCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544609" ref_strand="+" ref_description="SGN-E544609 [TUS-67-A12]">
      <seq>aatctttttcaaaaaataacctaattttttcaatctcccgccattgctgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctactcgagaagatggattaaactagagactatcagaacttccatttcaatgtgcctgtgaaatctaaagtaaattagttgcatttgctttcatttncagcaagtaaacaagggtgtttatttcttggtcacttaaatgcttgtatatgacatttgtatgtcattaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="121495" stop="126175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121795" g_stop="121950" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121951" i_stop="122061" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122062" g_stop="122130" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122131" i_stop="122432" i_length="302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122433" g_stop="122462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="255" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122463" i_stop="123515" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123516" g_stop="123548" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123549" i_stop="124355" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124356" g_stop="124426" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="359" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124427" i_stop="125175" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125176" g_stop="125257" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="441" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125258" i_stop="125370" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125371" g_stop="125469" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125470" i_stop="125602" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="125603" g_stop="125875" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="811" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E544609" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121795" e_stop="121950"/>
          <exon e_start="122062" e_stop="122130"/>
          <exon e_start="122433" e_stop="122462"/>
          <exon e_start="123516" e_stop="123548"/>
          <exon e_start="124356" e_stop="124426"/>
          <exon e_start="125176" e_stop="125257"/>
          <exon e_start="125371" e_stop="125469"/>
          <exon e_start="125603" e_stop="125875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTA</genome_strand>
        <mrna_strand>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG..............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTC-ATTTNCAGCAAGTAAACAAGGGTGTTTATTTCTTGGTCACTT-AAATGCTTGTATATGACATTTGTATGTCATTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305941" ref_strand="+" ref_description="SGN-E305941 [cLEY-17-A4]">
      <seq>atctttttcaaaaaataacctaattttttcaatctcccgccattgctgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="121496" stop="126008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121796" g_stop="121950" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121951" i_stop="122061" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122062" g_stop="122130" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="224" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122131" i_stop="122432" i_length="302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122433" g_stop="122462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="254" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122463" i_stop="123515" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123516" g_stop="123548" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="287" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123549" i_stop="124355" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124356" g_stop="124426" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="358" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124427" i_stop="125175" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125176" g_stop="125257" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="440" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125258" i_stop="125370" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125371" g_stop="125469" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125470" i_stop="125602" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="125603" g_stop="125708" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="645" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E305941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121796" e_stop="121950"/>
          <exon e_start="122062" e_stop="122130"/>
          <exon e_start="122433" e_stop="122462"/>
          <exon e_start="123516" e_stop="123548"/>
          <exon e_start="124356" e_stop="124426"/>
          <exon e_start="125176" e_stop="125257"/>
          <exon e_start="125371" e_stop="125469"/>
          <exon e_start="125603" e_stop="125708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACT</genome_strand>
        <mrna_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG..............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251068" ref_strand="+" ref_description="SGN-E251068 [cLEG-17-A4]">
      <seq>atctttttcaaaaaataacctaattttttcaatctcccgccattgttgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="121496" stop="125746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121796" g_stop="121950" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121951" i_stop="122061" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122062" g_stop="122130" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="224" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122131" i_stop="122432" i_length="302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122433" g_stop="122462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="254" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122463" i_stop="123515" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123516" g_stop="123548" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="287" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123549" i_stop="124355" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124356" g_stop="124426" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="358" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124427" i_stop="125175" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125176" g_stop="125257" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="440" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125258" i_stop="125370" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125371" g_stop="125446" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="516" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E251068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121796" e_stop="121950"/>
          <exon e_start="122062" e_stop="122130"/>
          <exon e_start="122433" e_stop="122462"/>
          <exon e_start="123516" e_stop="123548"/>
          <exon e_start="124356" e_stop="124426"/>
          <exon e_start="125176" e_stop="125257"/>
          <exon e_start="125371" e_stop="125446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTG</genome_strand>
        <mrna_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGTTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG..............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544608" ref_strand="+" ref_description="SGN-E544608 [TUS-67-A12](-)">
      <seq>ggaagaaattgcaggaacaaggcagacgaatttgaaaactgcattgagctttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctactcgagaagatggattaaactagagactatcagaacttccatttcaatgtgcctgtgaaatctaaagtaaattagttgcatttgctttcaatttcaagcaagtaaacaaggttgtttatttcttgttcacttaaaatgcttgtatatgacatttgtatgtcattaattaaagcactagaataagtgaaaggactactagtttcatctcttttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="121563" stop="126223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121863" g_stop="121950" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121951" i_stop="122061" i_length="111">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122062" g_stop="122130" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="157" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122131" i_stop="122432" i_length="302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122433" g_stop="122462" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="187" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122463" i_stop="123515" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123516" g_stop="123548" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="220" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123549" i_stop="124355" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124356" g_stop="124426" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="291" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124427" i_stop="125175" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125176" g_stop="125257" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="373" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125258" i_stop="125370" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125371" g_stop="125469" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="472" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125470" i_stop="125602" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="125603" g_stop="125924" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="794" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E544608" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121863" e_stop="121950"/>
          <exon e_start="122062" e_stop="122130"/>
          <exon e_start="122433" e_stop="122462"/>
          <exon e_start="123516" e_stop="123548"/>
          <exon e_start="124356" e_stop="124426"/>
          <exon e_start="125176" e_stop="125257"/>
          <exon e_start="125371" e_stop="125469"/>
          <exon e_start="125603" e_stop="125924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGC-TTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATACAT</genome_strand>
        <mrna_strand>GGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCA-TTGAGCTTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG..............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279834" ref_strand="+" ref_description="SGN-E279834 [cLER-8-H3]">
      <seq>agatttggatgtaggtcacttcaattcgttgaaatctcagctaaattcttgattttgaaccaattagcgaaaaccccaattcatgaaaacaactaggtgactgaaattttctgttaaaaatcatactttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtataaaggggtggtgggggtggggtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="126660" stop="127515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126960" g_stop="127215" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E279834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126960" e_stop="127215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATT</genome_strand>
        <mrna_strand>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708565" ref_strand="+" ref_description="SGN-E708565 [FA36AE03]">
      <seq>atttggatgtaggtcacttcaattcgttgaaatctcagctaaattcttgattttgaaccaattagcgaaaaccccaattcatgaaaacaactaggtgactgaaattttctgttaaaaatcatactttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtataaaggggtggtgggggtggggtggattgtgatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattgtttgtgtttctggggcaatcttaatggccatcttccgtggacctgtggtgtttggagacagaagctcagaattcatacacagtgatataagtgctaagggtcagccagagcctactggatggttaatgtcaagtttcgtggaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="126662" stop="130573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126962" g_stop="127432" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127433" i_stop="128663" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128664" g_stop="128726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="534" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128727" i_stop="128839" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128840" g_stop="128956" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="651" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128957" i_stop="130067" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130068" g_stop="130273" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="857" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E708565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126962" e_stop="127432"/>
          <exon e_start="128664" e_stop="128726"/>
          <exon e_start="128840" e_stop="128956"/>
          <exon e_start="130068" e_stop="130273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGG</genome_strand>
        <mrna_strand>ATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG.................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345812" ref_strand="+" ref_description="SGN-E345812 [cTOF-18-P15]">
      <seq>gcttcaattcgttgaaatctcaagcttaaattcttgattttgaaccaattagcgaaaaccccaattcaatggaaaaccaaacctaggtgactgaaattttctgttaaaaatcatacctttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtaaaaggggtggtgggggtggggtgtggatatgggatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattggtttgtgtttctggggcaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="126678" stop="130449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126977" g_stop="127432" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127433" i_stop="128663" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128664" g_stop="128726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="529" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128727" i_stop="128839" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128840" g_stop="128956" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="646" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128957" i_stop="130067" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130068" g_stop="130149" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="729" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E345812" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126977" e_stop="127432"/>
          <exon e_start="128664" e_stop="128726"/>
          <exon e_start="128840" e_stop="128956"/>
          <exon e_start="130068" e_stop="130149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAATTCGTTGAAATCTC-AGC-TAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTC-AT-GAAAA-C-AA-CTAGGTGACTGAAATTTTCTGTTAAAAATCATA-CTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGT-GGG-GTGGAT-TGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATT-GTTTGTGTTTCTGGGGCAATCTTA</genome_strand>
        <mrna_strand>GCTTCAATTCGTTGAAATCTCAAGCTTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCAATGGAAAACCAAACCTAGGTGACTGAAATTTTCTGTTAAAAATCATACCTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTA-AAAGGGGTGGTGGGGGTGGGGTGTGGATATGGGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG.................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGGTTTGTGTTTCTGGGGCAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327660" ref_strand="+" ref_description="SGN-E327660 [cTOC-20-J22]">
      <seq>gggtggattgtgatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattgtttgtgtttctggggcaatcttaatggccatcttccgtggacctgtggtgtttggagacagaagctcagaattcatacacagtgatataagtgctaagggtcagccagagcctactggatggttaatgtcaagtttcgtggaattgggttttgatgatggccacctcggtgttttatgcttaatangaaactgtatgtgcatggcagcatacttagctattcaggctccagttttggcaaataccctgcaagtatatcagtgacggcatattcatacctttttggntgccttttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="126907" stop="131894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127207" g_stop="127432" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127433" i_stop="128663" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128664" g_stop="128726" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="289" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128727" i_stop="128839" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128840" g_stop="128956" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="406" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128957" i_stop="130067" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130068" g_stop="130350" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="689" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130351" i_stop="131519" i_length="1169">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131520" g_stop="131594" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="763" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-E327660" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127207" e_stop="127432"/>
          <exon e_start="128664" e_stop="128726"/>
          <exon e_start="128840" e_stop="128956"/>
          <exon e_start="130068" e_stop="130350"/>
          <exon e_start="131520" e_stop="131594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAGGTAATTTGATAATCTTTTTGCTTTCATTGATTTCAATTTACTTGAGGAGAACCAGATTACTGTTCAGTAACTAAACTGAAAGGCTGCACCCAGATATCTAAATACTAAGATATACAACGTGATGGCTGCAAACCTTAGAGACTAGGTTCAACTTTCAGCAGAGTAATAAACGCTAGGCGAATTCTTTCTATCACCTAAGCCTTTGTGGGAGAGTTATCTAGTACCTTTGCTGATGGGAAGTAGTAGGTACTTGATAAGGTATACGCGAGTTGGCCCAAACACAATCACTGTAAAAAAAAGTTTATTGCGCCAATTGATCAATTCCTCAAATGACATGCTGCTAAATGTTAATTGACATATTTTTATTGGGTACATATGCTTGTTCCTAAGATTGACAGTCTGAAACTCAATGAGACAACCTAGCAAGGGAATGAAAGGAGACTTGCCTCAAAATGGAAATGCAAAAATTGATTCCATACATCAATAGAATCGTGAACCTTTGGATGTTCAGAGAGTTTAACTGTAAGAATAAATGGAAAAGTAAAACTTGATTGGTCTTGTTGAGTTATTTTTCAACTTGACCCTCACTATTGACTGTGATGCTAATGGATGAAATATTATTTGTTCATTTTTCTCTGTAAAGTTGTTCAATTGATCCATCAAGGATAGCAGGGGTATAAGTGCCAACAAACTGGCAGGGGGGAGCAGCATGGAAAGCGAGGCTCCACACCCTTCTCCGTGGGCTTTAGGAATCGAAAAGCTCTTAGTCCATAATTCTAATGCCCCAATCATGTCCTCTGACCACATGTTATCACTCTTTTTGTTAAATTCTTTTCCTTGGATCCATTAATTTCTACTGATCAGATCGAAAAATTACTTGAAACCTTCAAGTTTGATTTTAGGCCTTTTTTTTATTATATGAAATGATTCCAAGTGTCAAAGTGTTTGATTATTAGGTGATTTTATAAGAAATGATTTCCTTACTAAAAAACATAACAGCCTATATTTTTCTTGGTGAACGATGTTCTTTTTTGGGATATAGTTGGCAATTTAGATTTTGGCATGTCTTGAACCATTGTCTAAAACATCCTTGACTTTTCCAAATAAACCGTTTCTGTTTGTATTGTTTGGGAATATTCTAACTTGACTGAATTTTAAGAAATTTTCAGGCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATG</genome_strand>
        <mrna_strand>GGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG.................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATGGCCACCTCGGTGTTTTATGCTTAATANGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGTTTTGGC-AAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGNTGCCTTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>186</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6982" PGL_stop="5284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6982" e_stop="6256"/>
            <exon e_start="6083" e_stop="5958"/>
            <exon e_start="5779" e_stop="5407"/>
            <exon e_start="5302" e_stop="5284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6982" e_stop="6256" e_length="727"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.992">
            <gDNA_intron_boundary i_start="6255" i_stop="6084" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6083" e_stop="5958" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="5957" i_stop="5780" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5779" e_stop="5407" e_length="373"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5406" i_stop="5303" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="5302" e_stop="5284" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6982" stop="6256"/>
              <exon start="6083" stop="5958"/>
              <exon start="5779" stop="5407"/>
              <exon start="5302" stop="5284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5981" stop="5958"/>
              <exon start="5779" stop="5410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATGAGTAGAACCAAATGGCTGTTTTATCAAAAATGAATGAAAGTTTTGCTGTTGAAGAAGCAGCTTCCGCCGGTTTGAAATCAATGGAGAATTTAATCCGATTGGTTTCTCATGAACCGGTTCAGGCTGATTGCCGTGAAATGGCTGATTTTACGGTTTCGAAGTTCAAAAAGGTGATTTCAATTTTGGACCGGACCGGTCATGCTCGGTTCCGGCGAGGACCGGTTCAGGCTCAGGCTCCGGCTCCGGTTCAGGTTAGAGCTCCGGTTCGTGGTCCGGTTTATCCTGATTCGTTTACTTCGTTGTCTCTTGCTCCGTCGTTAAGCTTTGCTACGGCGAAGGAGAGACTTGCTCCGTCGTTAAGCTTTGCTTCGGCGAAGGAGAGACCGGTGGTGCAGGTGCAGACGGCGTTGACGCTTGACTTTTCGAAGCTGAATGTTAACCGTCCGATCGGGAATTCAAGTGCTTTTACTGCTTTTACTGTGAAATCTAAGGAGGTTTTAATGGCGGATCCGACGCCGACGAACTCGTCGTCGTTTATGTCGACGATTACCGGCGAAGCAACTGTATCTAATGGTAAGCAAGTTTCTTCTTCTATGTTGTTGCTTCCGCCACAGGCTGTGAATTTTCCGACCACCGGAAAACGTTGCCGCGAGCATGAACAATCTGATGCTATCTCCGGCAGCAAATCCACCGGCTCCGGCAAGTGTCACTGCAAAAAGAG : GAAAGCTAAGGATCGGAAAGTGATTAGGATTCCGGCGATAAGTACGAGGGTGGCTGATATACCGGGAGACGAGTTTTCATGGAGGAAATACGGGCAAAAGCCGATCAAGGGTTCAAAATACCCAAG : GGGTTATTACAAGTGTAGCAGCTTACGTGGATGTCCAGCAAGGAAACACGTGGAGCGCGCGATGGACGATCCAACGATGCTGATTGTGACTTATGAAGATGAACATTGTCATAATCCAGTTGCTGCGATGCATGGGAACAGTTCTCAAATGGTGAATTTTGGGTTAATGGAAAAGAAGTAGGGGGTGAAATGAAGATAGAGGAGAGTTGTAGGGTGATTTTGTAGTTTGGAATAGTTGGGGGGTTGAAGTTATATTTGGGAAAAGTTATAAGGGTTAAAAGAGTAGAGAGTAGGAAGTTGTGGGAATTGGTTTGTTATGTAAATTTGGAAAGATTTTAGGGGTTGAAAGAGAAAAAAAAAGAAAAGTTTCGCA : AAAAACAAATAAAAATTAA</gDNA_template>
            <first_frame> I  M  S  R  T  K  W  L  F  Y  Q  K  *  M  K  V  L  L  L  K  K  Q  L  P  P  V  *  N  Q  W  R  I  *  S  D  W  F  L  M  N  R  F  R  L  I  A  V  K  W  L  I  L  R  F  R  S  S  K  R  *  F  Q  F  W  T  G  P  V  M  L  G  S  G  E  D  R  F  R  L  R  L  R  L  R  F  R  L  E  L  R  F  V  V  R  F  I  L  I  R  L  L  R  C  L  L  L  R  R  *  A  L  L  R  R  R  R  D  L  L  R  R  *  A  L  L  R  R  R  R  D  R  W  C  R  C  R  R  R  *  R  L  T  F  R  S  *  M  L  T  V  R  S  G  I  Q  V  L  L  L  L  L  L  *  N  L  R  R  F  *  W  R  I  R  R  R  R  T  R  R  R  L  C  R  R  L  P  A  K  Q  L  Y  L  M  V  S  K  F  L  L  L  C  C  C  F  R  H  R  L  *  I  F  R  P  P  E  N  V  A  A  S  M  N  N  L  M  L  S  P  A  A  N  P  P  A  P  A  S  V  T  A  K  R   : G  K  L  R  I  G  K  *  L  G  F  R  R  *  V  R  G  W  L  I  Y  R  E  T  S  F  H  G  G  N  T  G  K  S  R  S  R  V  Q  N  T  Q   : G  V  I  T  S  V  A  A  Y  V  D  V  Q  Q  G  N  T  W  S  A  R  W  T  I  Q  R  C  *  L  *  L  M  K  M  N  I  V  I  I  Q  L  L  R  C  M  G  T  V  L  K  W  *  I  L  G  *  W  K  R  S  R  G  *  N  E  D  R  G  E  L  *  G  D  F  V  V  W  N  S  W  G  V  E  V  I  F  G  K  S  Y  K  G  *  K  S  R  E  *  E  V  V  G  I  G  L  L  C  K  F  G  K  I  L  G  V  E  R  E  K  K  R  K  V  S  Q :   K  T  N  K  N  * </first_frame>
            <second_frame>  S  *  V  E  P  N  G  C  F  I  K  N  E  *  K  F  C  C  *  R  S  S  F  R  R  F  E  I  N  G  E  F  N  P  I  G  F  S  *  T  G  S  G  *  L  P  *  N  G  *  F  Y  G  F  E  V  Q  K  G  D  F  N  F  G  P  D  R  S  C  S  V  P  A  R  T  G  S  G  S  G  S  G  S  G  S  G  *  S  S  G  S  W  S  G  L  S  *  F  V  Y  F  V  V  S  C  S  V  V  K  L  C  Y  G  E  G  E  T  C  S  V  V  K  L  C  F  G  E  G  E  T  G  G  A  G  A  D  G  V  D  A  *  L  F  E  A  E  C  *  P  S  D  R  E  F  K  C  F  Y  C  F  Y  C  E  I  *  G  G  F  N  G  G  S  D  A  D  E  L  V  V  V  Y  V  D  D  Y  R  R  S  N  C  I  *  W  *  A  S  F  F  F  Y  V  V  A  S  A  T  G  C  E  F  S  D  H  R  K  T  L  P  R  A  *  T  I  *  C  Y  L  R  Q  Q  I  H  R  L  R  Q  V  S  L  Q  K  E  :  E  S  *  G  S  E  S  D  *  D  S  G  D  K  Y  E  G  G  *  Y  T  G  R  R  V  F  M  E  E  I  R  A  K  A  D  Q  G  F  K  I  P  K  :  G  L  L  Q  V  *  Q  L  T  W  M  S  S  K  E  T  R  G  A  R  D  G  R  S  N  D  A  D  C  D  L  *  R  *  T  L  S  *  S  S  C  C  D  A  W  E  Q  F  S  N  G  E  F  W  V  N  G  K  E  V  G  G  E  M  K  I  E  E  S  C  R  V  I  L  *  F  G  I  V  G  G  L  K  L  Y  L  G  K  V  I  R  V  K  R  V  E  S  R  K  L  W  E  L  V  C  Y  V  N  L  E  R  F  *  G  L  K  E  K  K  K  E  K  F  R   : K  K  Q  I  K  I   </second_frame>
            <third_frame>   H  E  *  N  Q  M  A  V  L  S  K  M  N  E  S  F  A  V  E  E  A  A  S  A  G  L  K  S  M  E  N  L  I  R  L  V  S  H  E  P  V  Q  A  D  C  R  E  M  A  D  F  T  V  S  K  F  K  K  V  I  S  I  L  D  R  T  G  H  A  R  F  R  R  G  P  V  Q  A  Q  A  P  A  P  V  Q  V  R  A  P  V  R  G  P  V  Y  P  D  S  F  T  S  L  S  L  A  P  S  L  S  F  A  T  A  K  E  R  L  A  P  S  L  S  F  A  S  A  K  E  R  P  V  V  Q  V  Q  T  A  L  T  L  D  F  S  K  L  N  V  N  R  P  I  G  N  S  S  A  F  T  A  F  T  V  K  S  K  E  V  L  M  A  D  P  T  P  T  N  S  S  S  F  M  S  T  I  T  G  E  A  T  V  S  N  G  K  Q  V  S  S  S  M  L  L  L  P  P  Q  A  V  N  F  P  T  T  G  K  R  C  R  E  H  E  Q  S  D  A  I  S  G  S  K  S  T  G  S  G  K  C  H  C  K  K  R :   K  A  K  D  R  K  V  I  R  I  P  A  I  S  T  R  V  A  D  I  P  G  D  E  F  S  W  R  K  Y  G  Q  K  P  I  K  G  S  K  Y  P  R :   G  Y  Y  K  C  S  S  L  R  G  C  P  A  R  K  H  V  E  R  A  M  D  D  P  T  M  L  I  V  T  Y  E  D  E  H  C  H  N  P  V  A  A  M  H  G  N  S  S  Q  M  V  N  F  G  L  M  E  K  K  *  G  V  K  *  R  *  R  R  V  V  G  *  F  C  S  L  E  *  L  G  G  *  S  Y  I  W  E  K  L  *  G  L  K  E  *  R  V  G  S  C  G  N  W  F  V  M  *  I  W  K  D  F  R  G  *  K  R  K  K  K  K  S  F  A  :  K  N  K  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6971" stop="6256"/>
                    <exon start="6083" stop="5958"/>
                    <exon start="5779" stop="5599"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQMAVLSKMNESFAVEEAASAGLKSMENLIRLVSHEPVQADCREMADFTVSKFKKVISILDRTGHARFRRGPVQAQAPAPVQVRAPVRGPVYPDSFTSLSLAPSLSFATAKERLAPSLSFASAKERPVVQVQTALTLDFSKLNVNRPIGNSSAFTAFTVKSKEVLMADPTPTNSSSFMSTITGEATVSNGKQVSSSMLLLPPQAVNFPTTGKRCREHEQSDAISGSKSTGSGKCHCKKRKAKDRKVIRIPAISTRVADIPGDEFSWRKYGQKPIKGSKYPRGYYKCSSLRGCPARKHVERAMDDPTMLIVTYEDEHCHNPVAAMHGNSSQMVNFGLMEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5397" PGL_stop="6017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5397" e_stop="5769"/>
            <exon e_start="5943" e_stop="6017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.725" acc_prob="0.877" e_score="0.979"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="5397" e_stop="5769" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.725" acc_prob="0.877">
            <gDNA_intron_boundary i_start="5770" i_stop="5942" i_length="173"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="5943" e_stop="6017" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5397" stop="5769"/>
              <exon start="5943" stop="6017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356630" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCAAAAATTGCGAAACTTTTCTTTTTTTTTCTCTTTCAACCCCTAAAATCTTTCCAAATTTACATAACAAACCAATTCCCACAACTTCCTACTCTCTACTCTTTTAACCCTTATAACTTTTCCCAAATATAACTTCAACCCCCCAACTATTCCAAACTACAAAATCACCCTACAACTCTCCTCTATCTTCATTTCACCCCCTACTTCTTTTCCATTAACCCAAAATTCACCATTTGAGAACTGTTCCCATGCATCGCAGCAACTGGATTATGACAATGTTCATCTTCATAAGTCACAATCAGCATCGTTGGATCGTCCATCGCGCGCTCCACGTGTTTCCTTGCTGGACATCCACGTAAGCTGCTACACTT : GTACATTGTAATTACCTTGGGTATTTTGAACCCTTGATCGGCTTTTGCCCGTATTTCCTCCATGAAAACTCGTCT</gDNA_template>
            <first_frame> S  Q  K  L  R  N  F  S  F  F  F  S  F  N  P  *  N  L  S  K  F  T  *  Q  T  N  S  H  N  F  L  L  S  T  L  L  T  L  I  T  F  P  K  Y  N  F  N  P  P  T  I  P  N  Y  K  I  T  L  Q  L  S  S  I  F  I  S  P  P  T  S  F  P  L  T  Q  N  S  P  F  E  N  C  S  H  A  S  Q  Q  L  D  Y  D  N  V  H  L  H  K  S  Q  S  A  S  L  D  R  P  S  R  A  P  R  V  S  L  L  D  I  H  V  S  C  Y  T   : C  T  L  *  L  P  W  V  F  *  T  L  D  R  L  L  P  V  F  P  P  *  K  L  V  </first_frame>
            <second_frame>  V  K  N  C  E  T  F  L  F  F  S  L  S  T  P  K  I  F  P  N  L  H  N  K  P  I  P  T  T  S  Y  S  L  L  F  *  P  L  *  L  F  P  N  I  T  S  T  P  Q  L  F  Q  T  T  K  S  P  Y  N  S  P  L  S  S  F  H  P  L  L  L  F  H  *  P  K  I  H  H  L  R  T  V  P  M  H  R  S  N  W  I  M  T  M  F  I  F  I  S  H  N  Q  H  R  W  I  V  H  R  A  L  H  V  F  P  C  W  T  S  T  *  A  A  T  L  :  V  H  C  N  Y  L  G  Y  F  E  P  L  I  G  F  C  P  Y  F  L  H  E  N  S  S </second_frame>
            <third_frame>   S  K  I  A  K  L  F  F  F  F  L  F  Q  P  L  K  S  F  Q  I  Y  I  T  N  Q  F  P  Q  L  P  T  L  Y  S  F  N  P  Y  N  F  S  Q  I  *  L  Q  P  P  N  Y  S  K  L  Q  N  H  P  T  T  L  L  Y  L  H  F  T  P  Y  F  F  S  I  N  P  K  F  T  I  *  E  L  F  P  C  I  A  A  T  G  L  *  Q  C  S  S  S  *  V  T  I  S  I  V  G  S  S  I  A  R  S  T  C  F  L  A  G  H  P  R  K  L  L  H  L :   Y  I  V  I  T  L  G  I  L  N  P  *  S  A  F  A  R  I  S  S  M  K  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5466" stop="5769"/>
                    <exon start="5943" stop="5953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTNSHNFLLSTLLTLITFPKYNFNPPTIPNYKITLQLSSIFISPPTSFPLTQNSPFENCSHASQQLDYDNVHLHKSQSASLDRPSRAPRVSLLDIHVSCYTCTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16487" PGL_stop="13435"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16487" e_stop="16364"/>
            <exon e_start="15083" e_stop="14973"/>
            <exon e_start="14860" e_stop="14702"/>
            <exon e_start="14048" e_stop="13905"/>
            <exon e_start="13806" e_stop="13435"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16487" e_stop="16364" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.965">
            <gDNA_intron_boundary i_start="16363" i_stop="15084" i_length="1280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15083" e_stop="14973" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.738" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14972" i_stop="14861" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14860" e_stop="14702" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14701" i_stop="14049" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14048" e_stop="13905" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="13904" i_stop="13807" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="13806" e_stop="13435" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16487" stop="16364"/>
              <exon start="15083" stop="14973"/>
              <exon start="14860" stop="14702"/>
              <exon start="14048" stop="13905"/>
              <exon start="13806" stop="13600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16487" stop="16364"/>
              <exon start="15083" stop="14973"/>
              <exon start="14860" stop="14702"/>
              <exon start="14048" stop="13905"/>
              <exon start="13806" stop="13629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16486" stop="16364"/>
              <exon start="15083" stop="14973"/>
              <exon start="14860" stop="14702"/>
              <exon start="14048" stop="13937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16388" stop="16364"/>
              <exon start="15083" stop="14973"/>
              <exon start="14860" stop="14702"/>
              <exon start="14048" stop="13905"/>
              <exon start="13806" stop="13517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15079" stop="14973"/>
              <exon start="14860" stop="14702"/>
              <exon start="14048" stop="13905"/>
              <exon start="13806" stop="13490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14837" stop="14702"/>
              <exon start="14048" stop="13905"/>
              <exon start="13806" stop="13435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211928" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATTTGCTTTAGCAAGCTTGAAAGGAGTAAATATTCCCATGTATATTGCCATCAAAAGGCTTACGCCACTTGCTGTACTAGTAGCTGGATTCTTTACCGGAAAGGGTAGACCTACAACTCAG : GTAACACTTTCCGTATTACTAATTGCTGCCGGAGTTCTTATTGCAGCTCTTGGAGATTTTTCCTTTGATCTTTTTGGATACAGTTTGGCCTTTATTTCTGTTTTCTTCCAG : ACCATGTACCTTGTGTTGGTTGAGAAGTCAGGAGCAGAGGATGGGCTTTCGTCTATTGAGATCATGTTTTACAACAGTTTCTTATCTTTGCCATTTCTGCTATTCCTCATCATAGCCACAGGAGAATTTCCAAATTCTTTATCTCTTTTATTTGCAAAG : AGTAGTTCAATATCATTTCTTGCTATTCTTATTCTTTCATTGGTGATGGGCATCATCTTGAACTATACGATGTTCTTGTGCACCATCGTTAACTCGGCTTTAACTACCACAATTGTCGGAGTCCTCAAAGGAGTTGGATCTACG : ACACTTGGTTTTGTCCTGTTGGGAGGAGTAGAGGTACATGCTTTGAATGTCACTGGTTTAGTGATCAACACAGCTGGTGGGGTGTGGTATTCATTAGCTAAATATCAACAGAAGAAGAACAAATTGCCTAAGATAATGTCCGATATCGATAGTCATCGTAAATAAAAAGATTGCTAGTTGGTTCCATAGAGTTCAATATTTATAATTTTCTTCCTTCACAAGTTATGAAGAGAAAACTACATGATTTTGTTTTTCAATCAATTTTTGATAGTTACCTTGAACATGTAGTTGTTGTTTACATGTAAACATTGAAAATGTTGTACAACTCTTTTTTGTCTTGAAATGCTTAGGGTATTTCTTTTCATCTGTCTA</gDNA_template>
            <first_frame> R  I  C  F  S  K  L  E  R  S  K  Y  S  H  V  Y  C  H  Q  K  A  Y  A  T  C  C  T  S  S  W  I  L  Y  R  K  G  *  T  Y  N  S   : G  N  T  F  R  I  T  N  C  C  R  S  S  Y  C  S  S  W  R  F  F  L  *  S  F  W  I  Q  F  G  L  Y  F  C  F  L  P   : D  H  V  P  C  V  G  *  E  V  R  S  R  G  W  A  F  V  Y  *  D  H  V  L  Q  Q  F  L  I  F  A  I  S  A  I  P  H  H  S  H  R  R  I  S  K  F  F  I  S  F  I  C  K   : E  *  F  N  I  I  S  C  Y  S  Y  S  F  I  G  D  G  H  H  L  E  L  Y  D  V  L  V  H  H  R  *  L  G  F  N  Y  H  N  C  R  S  P  Q  R  S  W  I  Y   : D  T  W  F  C  P  V  G  R  S  R  G  T  C  F  E  C  H  W  F  S  D  Q  H  S  W  W  G  V  V  F  I  S  *  I  S  T  E  E  E  Q  I  A  *  D  N  V  R  Y  R  *  S  S  *  I  K  R  L  L  V  G  S  I  E  F  N  I  Y  N  F  L  P  S  Q  V  M  K  R  K  L  H  D  F  V  F  Q  S  I  F  D  S  Y  L  E  H  V  V  V  V  Y  M  *  T  L  K  M  L  Y  N  S  F  L  S  *  N  A  *  G  I  S  F  H  L  S  </first_frame>
            <second_frame>  G  F  A  L  A  S  L  K  G  V  N  I  P  M  Y  I  A  I  K  R  L  T  P  L  A  V  L  V  A  G  F  F  T  G  K  G  R  P  T  T  Q  :  V  T  L  S  V  L  L  I  A  A  G  V  L  I  A  A  L  G  D  F  S  F  D  L  F  G  Y  S  L  A  F  I  S  V  F  F  Q  :  T  M  Y  L  V  L  V  E  K  S  G  A  E  D  G  L  S  S  I  E  I  M  F  Y  N  S  F  L  S  L  P  F  L  L  F  L  I  I  A  T  G  E  F  P  N  S  L  S  L  L  F  A  K  :  S  S  S  I  S  F  L  A  I  L  I  L  S  L  V  M  G  I  I  L  N  Y  T  M  F  L  C  T  I  V  N  S  A  L  T  T  T  I  V  G  V  L  K  G  V  G  S  T  :  T  L  G  F  V  L  L  G  G  V  E  V  H  A  L  N  V  T  G  L  V  I  N  T  A  G  G  V  W  Y  S  L  A  K  Y  Q  Q  K  K  N  K  L  P  K  I  M  S  D  I  D  S  H  R  K  *  K  D  C  *  L  V  P  *  S  S  I  F  I  I  F  F  L  H  K  L  *  R  E  N  Y  M  I  L  F  F  N  Q  F  L  I  V  T  L  N  M  *  L  L  F  T  C  K  H  *  K  C  C  T  T  L  F  C  L  E  M  L  R  V  F  L  F  I  C  L </second_frame>
            <third_frame>   D  L  L  *  Q  A  *  K  E  *  I  F  P  C  I  L  P  S  K  G  L  R  H  L  L  Y  *  *  L  D  S  L  P  E  R  V  D  L  Q  L  R :   *  H  F  P  Y  Y  *  L  L  P  E  F  L  L  Q  L  L  E  I  F  P  L  I  F  L  D  T  V  W  P  L  F  L  F  S  S  R :   P  C  T  L  C  W  L  R  S  Q  E  Q  R  M  G  F  R  L  L  R  S  C  F  T  T  V  S  Y  L  C  H  F  C  Y  S  S  S  *  P  Q  E  N  F  Q  I  L  Y  L  F  Y  L  Q  R :   V  V  Q  Y  H  F  L  L  F  L  F  F  H  W  *  W  A  S  S  *  T  I  R  C  S  C  A  P  S  L  T  R  L  *  L  P  Q  L  S  E  S  S  K  E  L  D  L  R :   H  L  V  L  S  C  W  E  E  *  R  Y  M  L  *  M  S  L  V  *  *  S  T  Q  L  V  G  C  G  I  H  *  L  N  I  N  R  R  R  T  N  C  L  R  *  C  P  I  S  I  V  I  V  N  K  K  I  A  S  W  F  H  R  V  Q  Y  L  *  F  S  S  F  T  S  Y  E  E  K  T  T  *  F  C  F  S  I  N  F  *  *  L  P  *  T  C  S  C  C  L  H  V  N  I  E  N  V  V  Q  L  F  F  V  L  K  C  L  G  Y  F  F  S  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16486" stop="16364"/>
                    <exon start="15083" stop="14973"/>
                    <exon start="14860" stop="14702"/>
                    <exon start="14048" stop="13905"/>
                    <exon start="13806" stop="13642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFALASLKGVNIPMYIAIKRLTPLAVLVAGFFTGKGRPTTQVTLSVLLIAAGVLIAALGDFSFDLFGYSLAFISVFFQTMYLVLVEKSGAEDGLSSIEIMFYNSFLSLPFLLFLIIATGEFPNSLSLLFAKSSSISFLAILILSLVMGIILNYTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVLLGGVEVHALNVTGLVINTAGGVWYSLAKYQQKKNKLPKIMSDIDSHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13435" PGL_stop="13799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13435" e_stop="13799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="13435" e_stop="13799" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13435" stop="13799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13479" stop="13671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACAGATGAAAAGAAATACCCTAAGCATTTCAAGACAAAAAAGAGTTGTACAACATTTTCAATGTTTACATGTAAACAACAACTACATGTTCAAGGTAACTATCAAAAATTGATTGAAAAACAAAATCATGTAGTTTTCTCTTCATAACTTGTGAAGGAAGAAAATTATAAATATTGAACTCTATGGAACCAACTAGCAATCTTTTTATTTACGATGACTATCGATATCGGACATTATCTTAGGCAATTTGTTCTTCTTCTGTTGATATTTAGCTAATGAATACCACACCCCACCAGCTGTGTTGATCACTAAACCAGTGACATTCAAAGCATGTACCTCTACTCCTCCCAACAGGACAAAAC</gDNA_template>
            <first_frame> *  T  D  E  K  K  Y  P  K  H  F  K  T  K  K  S  C  T  T  F  S  M  F  T  C  K  Q  Q  L  H  V  Q  G  N  Y  Q  K  L  I  E  K  Q  N  H  V  V  F  S  S  *  L  V  K  E  E  N  Y  K  Y  *  T  L  W  N  Q  L  A  I  F  L  F  T  M  T  I  D  I  G  H  Y  L  R  Q  F  V  L  L  L  L  I  F  S  *  *  I  P  H  P  T  S  C  V  D  H  *  T  S  D  I  Q  S  M  Y  L  Y  S  S  Q  Q  D  K   </first_frame>
            <second_frame>  R  Q  M  K  R  N  T  L  S  I  S  R  Q  K  R  V  V  Q  H  F  Q  C  L  H  V  N  N  N  Y  M  F  K  V  T  I  K  N  *  L  K  N  K  I  M  *  F  S  L  H  N  L  *  R  K  K  I  I  N  I  E  L  Y  G  T  N  *  Q  S  F  Y  L  R  *  L  S  I  S  D  I  I  L  G  N  L  F  F  F  C  *  Y  L  A  N  E  Y  H  T  P  P  A  V  L  I  T  K  P  V  T  F  K  A  C  T  S  T  P  P  N  R  T  K  </second_frame>
            <third_frame>   D  R  *  K  E  I  P  *  A  F  Q  D  K  K  E  L  Y  N  I  F  N  V  Y  M  *  T  T  T  T  C  S  R  *  L  S  K  I  D  *  K  T  K  S  C  S  F  L  F  I  T  C  E  G  R  K  L  *  I  L  N  S  M  E  P  T  S  N  L  F  I  Y  D  D  Y  R  Y  R  T  L  S  *  A  I  C  S  S  S  V  D  I  *  L  M  N  T  T  P  H  Q  L  C  *  S  L  N  Q  *  H  S  K  H  V  P  L  L  L  P  T  G  Q  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0067C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="18740" PGL_stop="17845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18740" e_stop="17845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18740" e_stop="17845" e_length="896"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18740" stop="18127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18695" stop="18167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18525" stop="17845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18493" stop="17948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTTGTTAGCTGCCGATAAAAATGGCCTATGGTCATCATCAACAAACAAAATATATTAATAATAATAACAAAAAGATCCCTTTTTTTTTTACACCAAATTCCAAGATTTTTTTTTTTAACACTCTCTACACTACAGACTGCTTGATCCAAAAAAAATAAATATTTTTTTCAATTGTTATATACTCAGAAAAATCATGTAATCACGAGAATTTTTATATATACTTATAGATAAAGGAGGTAACTTTTGCTATTTTGGGAAGTGGGTATTGTGATTTTGGGGGTGATTTTCCATTTTTGTGCAAAAGATCTGTTTTTGAGTTAATTGAAAGCTGTATCTGAAGTGGGTGTTTTACCTTTTCCCAGTTTTGTGCTTCGATTATAGAGATTTCAGTAAATTTAGTGTGAAAGATTTGTTTTTTTAGTTAATTGATAGCTTGTATCTGAAGTGGGTATTGTGGTTTTGAGTTTTTCCTTATCTGGGTGTTTGATGTTTTCTAATTTTGTGCTTTGATTATAGAGATTTCAGTAATTTTAGTGTGTTAAGATTTGATTTTGAGTTAATTGAAAGCTTGTATCTGAAGTGGGGATTGTGCTTTTGGGTTTTTTCTTATATGGGTGTTTTTCATTTTCTAATTTCGTGCTTAAGTTATAGAGATTTCGATAAATTGGTGCAGAAGATTTGTTTTTGAGTTGATTGAAAGGTGTATTGAGCTCAATTGAGCAATCTTAAGCAGAGATTGATTTGGTTAGCAGATTTGGAGTGCATGTGATATTTTTTTTGGCTTTTATATCAATCTGGTTGTTGTTCTTTTTATAATTTCTTGATTCAATTGCAGATTTTTTTTTTGTGTAAATAAAGGACTGTCAATGAAGTAAGTGATAAGCTGTCTT</gDNA_template>
            <first_frame> F  F  F  V  S  C  R  *  K  W  P  M  V  I  I  N  K  Q  N  I  L  I  I  I  T  K  R  S  L  F  F  L  H  Q  I  P  R  F  F  F  L  T  L  S  T  L  Q  T  A  *  S  K  K  N  K  Y  F  F  Q  L  L  Y  T  Q  K  N  H  V  I  T  R  I  F  I  Y  T  Y  R  *  R  R  *  L  L  L  F  W  E  V  G  I  V  I  L  G  V  I  F  H  F  C  A  K  D  L  F  L  S  *  L  K  A  V  S  E  V  G  V  L  P  F  P  S  F  V  L  R  L  *  R  F  Q  *  I  *  C  E  R  F  V  F  L  V  N  *  *  L  V  S  E  V  G  I  V  V  L  S  F  S  L  S  G  C  L  M  F  S  N  F  V  L  *  L  *  R  F  Q  *  F  *  C  V  K  I  *  F  *  V  N  *  K  L  V  S  E  V  G  I  V  L  L  G  F  F  L  Y  G  C  F  S  F  S  N  F  V  L  K  L  *  R  F  R  *  I  G  A  E  D  L  F  L  S  *  L  K  G  V  L  S  S  I  E  Q  S  *  A  E  I  D  L  V  S  R  F  G  V  H  V  I  F  F  L  A  F  I  S  I  W  L  L  F  F  L  *  F  L  D  S  I  A  D  F  F  F  V  *  I  K  D  C  Q  *  S  K  *  *  A  V   </first_frame>
            <second_frame>  F  S  L  L  A  A  D  K  N  G  L  W  S  S  S  T  N  K  I  Y  *  *  *  *  Q  K  D  P  F  F  F  Y  T  K  F  Q  D  F  F  F  *  H  S  L  H  Y  R  L  L  D  P  K  K  I  N  I  F  F  N  C  Y  I  L  R  K  I  M  *  S  R  E  F  L  Y  I  L  I  D  K  G  G  N  F  C  Y  F  G  K  W  V  L  *  F  W  G  *  F  S  I  F  V  Q  K  I  C  F  *  V  N  *  K  L  Y  L  K  W  V  F  Y  L  F  P  V  L  C  F  D  Y  R  D  F  S  K  F  S  V  K  D  L  F  F  *  L  I  D  S  L  Y  L  K  W  V  L  W  F  *  V  F  P  Y  L  G  V  *  C  F  L  I  L  C  F  D  Y  R  D  F  S  N  F  S  V  L  R  F  D  F  E  L  I  E  S  L  Y  L  K  W  G  L  C  F  W  V  F  S  Y  M  G  V  F  H  F  L  I  S  C  L  S  Y  R  D  F  D  K  L  V  Q  K  I  C  F  *  V  D  *  K  V  Y  *  A  Q  L  S  N  L  K  Q  R  L  I  W  L  A  D  L  E  C  M  *  Y  F  F  W  L  L  Y  Q  S  G  C  C  S  F  Y  N  F  L  I  Q  L  Q  I  F  F  L  C  K  *  R  T  V  N  E  V  S  D  K  L  S  </second_frame>
            <third_frame>   F  L  C  *  L  P  I  K  M  A  Y  G  H  H  Q  Q  T  K  Y  I  N  N  N  N  K  K  I  P  F  F  F  T  P  N  S  K  I  F  F  F  N  T  L  Y  T  T  D  C  L  I  Q  K  K  *  I  F  F  S  I  V  I  Y  S  E  K  S  C  N  H  E  N  F  Y  I  Y  L  *  I  K  E  V  T  F  A  I  L  G  S  G  Y  C  D  F  G  G  D  F  P  F  L  C  K  R  S  V  F  E  L  I  E  S  C  I  *  S  G  C  F  T  F  S  Q  F  C  A  S  I  I  E  I  S  V  N  L  V  *  K  I  C  F  F  S  *  L  I  A  C  I  *  S  G  Y  C  G  F  E  F  F  L  I  W  V  F  D  V  F  *  F  C  A  L  I  I  E  I  S  V  I  L  V  C  *  D  L  I  L  S  *  L  K  A  C  I  *  S  G  D  C  A  F  G  F  F  L  I  W  V  F  F  I  F  *  F  R  A  *  V  I  E  I  S  I  N  W  C  R  R  F  V  F  E  L  I  E  R  C  I  E  L  N  *  A  I  L  S  R  D  *  F  G  *  Q  I  W  S  A  C  D  I  F  F  G  F  Y  I  N  L  V  V  V  L  F  I  I  S  *  F  N  C  R  F  F  F  C  V  N  K  G  L  S  M  K  *  V  I  S  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18247" stop="18047"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFLILCFDYRDFSNFSVLRFDFELIESLYLKWGLCFWVFSYMGVFHFLISCLSYRDFDKLVQKICF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="19975" PGL_stop="22584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19975" e_stop="20012"/>
            <exon e_start="20117" e_stop="20154"/>
            <exon e_start="20970" e_stop="21036"/>
            <exon e_start="21104" e_stop="21181"/>
            <exon e_start="21339" e_stop="21484"/>
            <exon e_start="21941" e_stop="22584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="0.987"/>
          <exon-intron don_prob="0.988" acc_prob="0.938" e_score="0.993"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19975" e_stop="20012" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20013" i_stop="20116" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20117" e_stop="20154" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20155" i_stop="20969" i_length="815"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20970" e_stop="21036" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="21037" i_stop="21103" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="21104" e_stop="21181" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="21182" i_stop="21338" i_length="157"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="21339" e_stop="21484" e_length="146"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.938">
            <gDNA_intron_boundary i_start="21485" i_stop="21940" i_length="456"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="21941" e_stop="22584" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19975" stop="20012"/>
              <exon start="20117" stop="20154"/>
              <exon start="20970" stop="21036"/>
              <exon start="21104" stop="21181"/>
              <exon start="21339" stop="21484"/>
              <exon start="21941" stop="22368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19976" stop="20012"/>
              <exon start="20117" stop="20154"/>
              <exon start="20970" stop="21036"/>
              <exon start="21104" stop="21181"/>
              <exon start="21339" stop="21484"/>
              <exon start="21941" stop="22115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21421" stop="21484"/>
              <exon start="21941" stop="22584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAGCTGCTCTCAACTCCAAGCTTTCACTTCCTTCAG : GGAAGCAGCAACAGTCCAAATTTGCTGCCCAATCAGTG : TGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGG : GTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCCGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAG : GGAGCATCAACCTTACTCTTTTGCATAGGTGGACCTTATGGACATGGTAGACATTTGCGAGAGAGAGCTAACGTATCAGTCAAACTGTCATCCTTAGTCTTGAATCATGAGATTGCGTTAGTTGTACTGATAGAACAACTTTACAG : AGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCGAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTACATAGAGGATGTGCCTAACCACCCTAACGAGGCGGAGGTGGTTGCCATGGAATTAGTTGAGGCTCTCGCAAGCTAGCCCAAACACCACAGTTATCAAAATAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACATGTGGATTGCAAAACCAGATGATGGTACCTCTATCGTGATGGTGTGTCTTGCCACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGACGAGCTTGGCCCAGACATATTGTATCCACCACAATGATCTAATTCACCATGCCCTCTTCACCATTTCCAAATGAATGAAGTAAGGTTTTGTCTAATTATCCTTTTTGAGTCTTACAAAGTTAGACAAATATGATTAGATATTTTTTCATTTGAAACATTTGCCAAACTATCTTGTAACACAAAGCTATCATTTTTTGAAGTTATTTTGTTTCTCCT</gDNA_template>
            <first_frame> C  S  C  S  Q  L  Q  A  F  T  S  F  R :   E  A  A  T  V  Q  I  C  C  P  I  S   : V  T  *  W  L  K  L  N  M  R  T  L  L  L  *  A  S  S  G  L  M  N  G :   L  *  C  W  M  S  V  V  M  M  L  D  P  S  R  W  L  L  *  S  E  R  L  E  T  R :   E  H  Q  P  Y  S  F  A  *  V  D  L  M  D  M  V  D  I  C  E  R  E  L  T  Y  Q  S  N  C  H  P  *  S  *  I  M  R  L  R  *  L  Y  *  *  N  N  F  T   : E  G  G  P  F  L  K  D  R  N  T  I  T  R  H  *  T  I  S  W  N  W  N  D  F  R  I  S  F  N  H  H  Q  S  S  *  T  Q  V  W  N  T  F  L  R  M  T  S  Y  I  E  D  V  P  N  H  P  N  E  A  E  V  V  A  M  E  L  V  E  A  L  A  S  *  P  K  H  H  S  Y  Q  N  K  I  K  R  G  G  G  G  *  K  K  *  E  G  P  H  S  *  I  L  E  V  L  R  S  *  H  V  D  C  K  T  R  *  W  Y  L  Y  R  D  G  V  S  C  H  A  Y  *  L  R  F  A  C  S  N  L  T  L  E  C  *  R  A  W  P  R  H  I  V  S  T  T  M  I  *  F  T  M  P  S  S  P  F  P  N  E  *  S  K  V  L  S  N  Y  P  F  *  V  L  Q  S  *  T  N  M  I  R  Y  F  F  I  *  N  I  C  Q  T  I  L  *  H  K  A  I  I  F  *  S  Y  F  V  S  P </first_frame>
            <second_frame>  V  A  A  L  N  S  K  L  S  L  P  S   : G  K  Q  Q  Q  S  K  F  A  A  Q  S  V  :  *  R  S  G  S  N  *  T  *  G  H  C  C  Y  E  P  H  Q  A  *  *  M   : G  C  N  V  G  *  A  W  S  *  C  W  I  R  A  D  G  F  F  N  R  R  G  W  K  Q   : G  S  I  N  L  T  L  L  H  R  W  T  L  W  T  W  *  T  F  A  R  E  S  *  R  I  S  Q  T  V  I  L  S  L  E  S  *  D  C  V  S  C  T  D  R  T  T  L  Q  :  R  V  D  H  S  *  R  T  E  I  P  S  L  D  I  E  L  F  L  G  I  G  M  T  S  E  F  H  S  T  T  I  K  A  A  K  L  R  F  G  I  P  F  *  G  *  P  R  T  *  R  M  C  L  T  T  L  T  R  R  R  W  L  P  W  N  *  L  R  L  S  Q  A  S  P  N  T  T  V  I  K  I  K  *  K  E  E  V  V  V  E  K  S  E  R  D  L  I  R  R  S  *  K  C  *  G  R  D  M  W  I  A  K  P  D  D  G  T  S  I  V  M  V  C  L  A  T  P  T  S  *  G  L  P  V  Q  I  *  R  W  N  V  D  E  L  G  P  D  I  L  Y  P  P  Q  *  S  N  S  P  C  P  L  H  H  F  Q  M  N  E  V  R  F  C  L  I  I  L  F  E  S  Y  K  V  R  Q  I  *  L  D  I  F  S  F  E  T  F  A  K  L  S  C  N  T  K  L  S  F  F  E  V  I  L  F  L   </second_frame>
            <third_frame>   *  L  L  S  T  P  S  F  H  F  L  Q  :  G  S  S  N  S  P  N  L  L  P  N  Q  C :   D  V  V  A  Q  I  E  H  E  D  I  A  V  M  S  L  I  R  P  D  E  W  :  V  V  M  L  D  E  R  G  H  D  V  G  S  E  Q  M  A  S  L  I  G  E  A  G  N  K  :  G  A  S  T  L  L  F  C  I  G  G  P  Y  G  H  G  R  H  L  R  E  R  A  N  V  S  V  K  L  S  S  L  V  L  N  H  E  I  A  L  V  V  L  I  E  Q  L  Y  R :   G  W  T  I  L  K  G  Q  K  Y  H  H  *  T  L  N  Y  F  L  E  L  E  *  L  P  N  F  I  Q  P  P  S  K  Q  L  N  S  G  L  E  Y  L  F  E  D  D  L  V  H  R  G  C  A  *  P  P  *  R  G  G  G  G  C  H  G  I  S  *  G  S  R  K  L  A  Q  T  P  Q  L  S  K  *  N  K  K  R  R  W  W  L  K  K  V  R  G  T  S  F  V  D  L  R  S  V  E  V  V  T  C  G  L  Q  N  Q  M  M  V  P  L  S  *  W  C  V  L  P  R  L  L  V  K  V  C  L  F  K  S  N  V  G  M  L  T  S  L  A  Q  T  Y  C  I  H  H  N  D  L  I  H  H  A  L  F  T  I  S  K  *  M  K  *  G  F  V  *  L  S  F  L  S  L  T  K  L  D  K  Y  D  *  I  F  F  H  L  K  H  L  P  N  Y  L  V  T  Q  S  Y  H  F  L  K  L  F  C  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19980" stop="20012"/>
                    <exon start="20117" stop="20154"/>
                    <exon start="20970" stop="21036"/>
                    <exon start="21104" stop="21181"/>
                    <exon start="21339" stop="21484"/>
                    <exon start="21941" stop="21980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSTPSFHFLQGSSNSPNLLPNQCDVVAQIEHEDIAVMSLIRPDEWVVMLDERGHDVGSEQMASLIGEAGNKGASTLLFCIGGPYGHGRHLRERANVSVKLSSLVLNHEIALVVLIEQLYRGWTILKGQKYHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20313" e_stop="20401"/>
            <exon e_start="20970" e_stop="21036"/>
            <exon e_start="21104" e_stop="21181"/>
            <exon e_start="21941" e_stop="22266"/>
            <exon e_start="22317" e_stop="22541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.741" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.938" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.887"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="20313" e_stop="20401" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.741" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20402" i_stop="20969" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20970" e_stop="21036" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="21037" i_stop="21103" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="21104" e_stop="21181" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.938">
            <gDNA_intron_boundary i_start="21182" i_stop="21940" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="0.887">
            <gDNA_exon_boundary e_start="21941" e_stop="22266" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22267" i_stop="22316" i_length="50"/>
          </intron>
          <exon e_serial="5" e_score="0.871">
            <gDNA_exon_boundary e_start="22317" e_stop="22541" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20313" stop="20401"/>
              <exon start="20970" stop="21036"/>
              <exon start="21104" stop="21181"/>
              <exon start="21941" stop="22266"/>
              <exon start="22317" stop="22541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTATAGTTGATGAGTATATGAAGAAGCTCAGGAATTATTGTAGCGTTGATGATGTTCGAATAAAATCTAATCCCAAAAATGCGCG : TGACGTAGTGGCTCAAATTGAACATGAGGACATTGCTGTTATGAGCCTCATCAGGCCTGATGAATGG : GTTGTAATGTTGGATGAGCGTGGTCATGATGTTGGATCCGAGCAGATGGCTTCTTTAATCGGAGAGGCTGGAAACAAG : AGGGTGGACCATTCTTAAAGGACAGAAATACCATCACTAGACATTGAACTATTTCTTGGAATTGGAATGACTTCCGAATTTCATTCAACCACCATCAAAGCAGCTAAACTCAGGTTTGGAATACCTTTTTGAGGATGACCTCGTACATAGAGGATGTGCCTAACCACCCTAACGAGGCGGAGGTGGTTGCCATGGAATTAGTTGAGGCTCTCGCAAGCTAGCCCAAACACCACAGTTATCAAAATAAAATAAAAAGAGGAGGTGGTGGTTGAAAAAAGTGAGAGGGACCTCATTCGTAGATCTTAGAAGTGTTGAGGTCGTGACAT : CCACGCCTACTAGTTAAGGTTTGCCTGTTCAAATCTAACGTTGGAATGTTGACGAGCTTGGCCCAGACATATTGTATCCACCACAATGATCTAATTCACCATGCCCTCTTCACCATTTCCAAATGAATGAAGTAAGGTTTTGTCTAATTATCCTTTTTGAGTCTTACAAAGTTAGACAAATATGATTAGATATTTTTTCATTTGAAACATTTGCCAAACTATCTT</gDNA_template>
            <first_frame> Q  F  I  V  D  E  Y  M  K  K  L  R  N  Y  C  S  V  D  D  V  R  I  K  S  N  P  K  N  A  R :   D  V  V  A  Q  I  E  H  E  D  I  A  V  M  S  L  I  R  P  D  E  W  :  V  V  M  L  D  E  R  G  H  D  V  G  S  E  Q  M  A  S  L  I  G  E  A  G  N  K  :  R  V  D  H  S  *  R  T  E  I  P  S  L  D  I  E  L  F  L  G  I  G  M  T  S  E  F  H  S  T  T  I  K  A  A  K  L  R  F  G  I  P  F  *  G  *  P  R  T  *  R  M  C  L  T  T  L  T  R  R  R  W  L  P  W  N  *  L  R  L  S  Q  A  S  P  N  T  T  V  I  K  I  K  *  K  E  E  V  V  V  E  K  S  E  R  D  L  I  R  R  S  *  K  C  *  G  R  D  I :   H  A  Y  *  L  R  F  A  C  S  N  L  T  L  E  C  *  R  A  W  P  R  H  I  V  S  T  T  M  I  *  F  T  M  P  S  S  P  F  P  N  E  *  S  K  V  L  S  N  Y  P  F  *  V  L  Q  S  *  T  N  M  I  R  Y  F  F  I  *  N  I  C  Q  T  I   </first_frame>
            <second_frame>  S  L  *  L  M  S  I  *  R  S  S  G  I  I  V  A  L  M  M  F  E  *  N  L  I  P  K  M  R   : V  T  *  W  L  K  L  N  M  R  T  L  L  L  *  A  S  S  G  L  M  N  G :   L  *  C  W  M  S  V  V  M  M  L  D  P  S  R  W  L  L  *  S  E  R  L  E  T  R :   G  W  T  I  L  K  G  Q  K  Y  H  H  *  T  L  N  Y  F  L  E  L  E  *  L  P  N  F  I  Q  P  P  S  K  Q  L  N  S  G  L  E  Y  L  F  E  D  D  L  V  H  R  G  C  A  *  P  P  *  R  G  G  G  G  C  H  G  I  S  *  G  S  R  K  L  A  Q  T  P  Q  L  S  K  *  N  K  K  R  R  W  W  L  K  K  V  R  G  T  S  F  V  D  L  R  S  V  E  V  V  T   : S  T  P  T  S  *  G  L  P  V  Q  I  *  R  W  N  V  D  E  L  G  P  D  I  L  Y  P  P  Q  *  S  N  S  P  C  P  L  H  H  F  Q  M  N  E  V  R  F  C  L  I  I  L  F  E  S  Y  K  V  R  Q  I  *  L  D  I  F  S  F  E  T  F  A  K  L  S  </second_frame>
            <third_frame>   V  Y  S  *  *  V  Y  E  E  A  Q  E  L  L  *  R  *  *  C  S  N  K  I  *  S  Q  K  C  A  :  *  R  S  G  S  N  *  T  *  G  H  C  C  Y  E  P  H  Q  A  *  *  M   : G  C  N  V  G  *  A  W  S  *  C  W  I  R  A  D  G  F  F  N  R  R  G  W  K  Q   : E  G  G  P  F  L  K  D  R  N  T  I  T  R  H  *  T  I  S  W  N  W  N  D  F  R  I  S  F  N  H  H  Q  S  S  *  T  Q  V  W  N  T  F  L  R  M  T  S  Y  I  E  D  V  P  N  H  P  N  E  A  E  V  V  A  M  E  L  V  E  A  L  A  S  *  P  K  H  H  S  Y  Q  N  K  I  K  R  G  G  G  G  *  K  K  *  E  G  P  H  S  *  I  L  E  V  L  R  S  *  H  :  P  R  L  L  V  K  V  C  L  F  K  S  N  V  G  M  L  T  S  L  A  Q  T  Y  C  I  H  H  N  D  L  I  H  H  A  L  F  T  I  S  K  *  M  K  *  G  F  V  *  L  S  F  L  S  L  T  K  L  D  K  Y  D  *  I  F  F  H  L  K  H  L  P  N  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20313" stop="20401"/>
                    <exon start="20970" stop="21036"/>
                    <exon start="21104" stop="21181"/>
                    <exon start="21941" stop="21958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFIVDEYMKKLRNYCSVDDVRIKSNPKNARDVVAQIEHEDIAVMSLIRPDEWVVMLDERGHDVGSEQMASLIGEAGNKRVDHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="23691" PGL_stop="22720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23691" e_stop="23658"/>
            <exon e_start="23567" e_stop="23527"/>
            <exon e_start="23386" e_stop="23315"/>
            <exon e_start="23230" e_stop="22720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.018" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23691" e_stop="23658" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.018" acc_prob="0.964">
            <gDNA_intron_boundary i_start="23657" i_stop="23568" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23567" e_stop="23527" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.873" acc_prob="0.991">
            <gDNA_intron_boundary i_start="23526" i_stop="23387" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23386" e_stop="23315" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.845">
            <gDNA_intron_boundary i_start="23314" i_stop="23231" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23230" e_stop="22720" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23691" stop="23658"/>
              <exon start="23567" stop="23527"/>
              <exon start="23386" stop="23315"/>
              <exon start="23230" stop="22720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATGATAGCAAGACGTTGGTGGACTTCTTCACT : GAAGAAGACTCCTTACATCCTGCCTTAACTGGAGTGATAGT : GTTTACGTCCACTCCTGACAAAGTAAATAACAAGTACTATCTCGGTCCTGCTCCACTAGAAGAGATGGCTAG : CCAAATTGCTACTGCCTCTGGTCCCTGTGGAAATAACCAGGACTACATATTCAAAATGGAGAAGGCTTTACATGACATCAGTCACGAAGACGACTACATCACAGAGCTAGCAAATGAAGTGCGCAAAGTTCTTGGGATCACAGTGTCTGTCCCAATGGAGAAGAAGTTACTTAGTCCTTCCCAAACTCCACTCAAATCCCATATTTCCCCTGTGAAAATCCTCCCGTTGTCGGAAGCTATAGCTGCTGTTGCTGCAGACTCTTGACAAAGAAAATGATCTAGATATCTTTAGGAGGATGATGTATCCCTTGTGTTTTTTCCTTTTCCTCTAAACTTAGACTAGAATTTGGGGGTGGGGTGGGGGTAGGATAATGAGTTGAGTTGACATACTAACCAACCAGATGACTTTGTGTGGCCAGTTTGAACATGGATTCTTGAGTTATTATGAGCACTTTTTGATGAAATCTGATTAGTAGCTTACATGTTGAAAATACATGATCAATTTATTTTA</gDNA_template>
            <first_frame> V  *  *  Q  D  V  G  G  L  L  H   : *  R  R  L  L  T  S  C  L  N  W  S  D  S  :  V  Y  V  H  S  *  Q  S  K  *  Q  V  L  S  R  S  C  S  T  R  R  D  G  *  :  P  N  C  Y  C  L  W  S  L  W  K  *  P  G  L  H  I  Q  N  G  E  G  F  T  *  H  Q  S  R  R  R  L  H  H  R  A  S  K  *  S  A  Q  S  S  W  D  H  S  V  C  P  N  G  E  E  V  T  *  S  F  P  N  S  T  Q  I  P  Y  F  P  C  E  N  P  P  V  V  G  S  Y  S  C  C  C  C  R  L  L  T  K  K  M  I  *  I  S  L  G  G  *  C  I  P  C  V  F  S  F  S  S  K  L  R  L  E  F  G  G  G  V  G  V  G  *  *  V  E  L  T  Y  *  P  T  R  *  L  C  V  A  S  L  N  M  D  S  *  V  I  M  S  T  F  *  *  N  L  I  S  S  L  H  V  E  N  T  *  S  I  Y  F  </first_frame>
            <second_frame>  Y  D  S  K  T  L  V  D  F  F  T  :  E  E  D  S  L  H  P  A  L  T  G  V  I  V :   F  T  S  T  P  D  K  V  N  N  K  Y  Y  L  G  P  A  P  L  E  E  M  A  S :   Q  I  A  T  A  S  G  P  C  G  N  N  Q  D  Y  I  F  K  M  E  K  A  L  H  D  I  S  H  E  D  D  Y  I  T  E  L  A  N  E  V  R  K  V  L  G  I  T  V  S  V  P  M  E  K  K  L  L  S  P  S  Q  T  P  L  K  S  H  I  S  P  V  K  I  L  P  L  S  E  A  I  A  A  V  A  A  D  S  *  Q  R  K  *  S  R  Y  L  *  E  D  D  V  S  L  V  F  F  P  F  P  L  N  L  D  *  N  L  G  V  G  W  G  *  D  N  E  L  S  *  H  T  N  Q  P  D  D  F  V  W  P  V  *  T  W  I  L  E  L  L  *  A  L  F  D  E  I  *  L  V  A  Y  M  L  K  I  H  D  Q  F  I  L </second_frame>
            <third_frame>   M  I  A  R  R  W  W  T  S  S  L :   K  K  T  P  Y  I  L  P  *  L  E  *  *   : C  L  R  P  L  L  T  K  *  I  T  S  T  I  S  V  L  L  H  *  K  R  W  L   : A  K  L  L  L  P  L  V  P  V  E  I  T  R  T  T  Y  S  K  W  R  R  L  Y  M  T  S  V  T  K  T  T  T  S  Q  S  *  Q  M  K  C  A  K  F  L  G  S  Q  C  L  S  Q  W  R  R  S  Y  L  V  L  P  K  L  H  S  N  P  I  F  P  L  *  K  S  S  R  C  R  K  L  *  L  L  L  L  Q  T  L  D  K  E  N  D  L  D  I  F  R  R  M  M  Y  P  L  C  F  F  L  F  L  *  T  *  T  R  I  W  G  W  G  G  G  R  I  M  S  *  V  D  I  L  T  N  Q  M  T  L  C  G  Q  F  E  H  G  F  L  S  Y  Y  E  H  F  L  M  K  S  D  *  *  L  T  C  *  K  Y  M  I  N  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23690" stop="23658"/>
                    <exon start="23567" stop="23527"/>
                    <exon start="23386" stop="23315"/>
                    <exon start="23230" stop="22966"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDSKTLVDFFTEEDSLHPALTGVIVFTSTPDKVNNKYYLGPAPLEEMASQIATASGPCGNNQDYIFKMEKALHDISHEDDYITELANEVRKVLGITVSVPMEKKLLSPSQTPLKSHISPVKILPLSEAIAAVAADS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="36628" PGL_stop="39376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36628" e_stop="36712"/>
            <exon e_start="36824" e_stop="36888"/>
            <exon e_start="38206" e_stop="38263"/>
            <exon e_start="38361" e_stop="38469"/>
            <exon e_start="38568" e_stop="38840"/>
            <exon e_start="38918" e_stop="39376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36628" e_stop="36712" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36824" e_stop="36888" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38206" e_stop="38263" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.884">
            <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38361" e_stop="38469" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38568" e_stop="38840" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38841" i_stop="38917" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="38918" e_stop="39376" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36628" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36636" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38840"/>
              <exon start="38918" stop="39376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36639" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
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              <exon start="38918" stop="39302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38717" stop="38840"/>
              <exon start="38918" stop="39344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351503" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38728" stop="38840"/>
              <exon start="38918" stop="39344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38782" stop="38840"/>
              <exon start="38918" stop="39344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38804" stop="38840"/>
              <exon start="38918" stop="39344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38811" stop="38840"/>
              <exon start="38918" stop="39261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38812" stop="38840"/>
              <exon start="38918" stop="39261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38812" stop="38840"/>
              <exon start="38918" stop="39261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38820" stop="38840"/>
              <exon start="38918" stop="39349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284637" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTCAGAGAGTGTGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG : TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT : CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG : GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG : GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGG : GGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATCTTTCTGATCAAAGATTTTGGTTGTTTTAGTACTTCCTGAATGAAATCTTCCCAACTTTTATTATTTTGTTCTTTCTCATAAGCATAAATAGTTT</gDNA_template>
            <first_frame> S  S  E  S  V  *  E  R  E  A  Q  S  E  S  F  R  V  S  S  P  P  L  S  S  I  E  D  E   : V  Q  H  C  E  P  D  Y  W  V  P  E  E  A  R  D  R  *  *  P  E  T  :  P  S  F  L  *  Q  E  D  L  P  G  G  *  R  R  C  F  G  R   : G  V  Q  G  I  R  F  Q  D  Y  G  R  M  *  Q  A  R  F  P  N  E  A  G  S  V  N  S  R  P  C  S  S  S  A  S  Q  R :   H  S  L  L  P  W  L  W  *  A  *  W  *  K  T  K  E  V  C  P  W  M  H  C  Q  S  *  P  F  S  S  E  F  G  Y  C  E  E  G  R  E  *  S  S  W  T  D  R  H  *  K  T  *  N  E  R  T  Q  K  G  F  Q  D  *  E  A  L  Q  P  W  K  R  *  *  C  Q  E  V  C  *  H  L  S  P  N  I  H  K  Q  K  G :   E  R  G  *  Q  G  S  *  D  P  E  A  G  N  T  I  D  S  S  E  E  E  S  K  N  R  *  Q  E  E  E  N  C  Q  G  *  V  G  S  S  *  L  S  E  A  F  S  V  *  V  E  G  T  E  R  K  A  K  *  E  F  G  *  E  E  V  *  T  F  C  C  L  Q  A  I  Y  C  C  L  R  S  F  R  K  K  Q  S  V  I  S  V  C  L  K  R  S  Y  L  *  Y  L  A  F  F  N  V  L  R  *  *  V  L  S  *  C  I  V  L  L  C  D  L  S  D  Q  R  F  W  L  F  *  Y  F  L  N  E  I  F  P  T  F  I  I  L  F  F  L  I  S  I  N  S   </first_frame>
            <second_frame>  A  Q  R  V  C  E  R  E  R  L  R  V  K  V  S  E  F  H  R  L  H  *  V  Q  S  K  M  K  :  F  N  I  A  N  P  T  T  G  C  Q  K  K  L  E  I  D  D  D  Q  K  L :   R  A  F  F  D  K  R  I  S  Q  E  V  S  G  D  A  L  G  E  :  E  F  K  G  Y  V  F  K  I  M  G  G  C  D  K  Q  G  F  P  M  K  Q  G  V  L  T  P  G  R  V  R  L  L  L  H  R   : G  T  P  C  F  R  G  Y  G  R  R  N  G  E  R  R  R  K  S  V  R  G  C  I  V  S  P  D  L  S  V  L  N  L  V  I  V  K  K  G  E  N  D  L  P  G  L  T  D  T  E  K  P  R  M  R  G  P  K  R  A  S  K  I  R  K  L  F  N  L  G  K  D  D  D  V  R  K  Y  V  N  T  Y  R  R  T  F  T  N  K  K   : G  K  E  V  S  K  A  P  K  I  Q  R  L  V  T  P  L  T  L  Q  R  K  R  A  R  I  A  D  K  K  K  R  I  A  K  A  K  S  E  A  A  D  Y  Q  K  L  L  A  S  R  L  K  E  Q  R  E  R  R  S  E  S  L  A  K  K  R  S  R  L  S  A  A  S  K  P  S  I  A  A  *  D  H  F  E  R  S  N  Q  *  Y  L  S  A  *  K  G  H  I  C  D  I  L  L  F  L  M  F  *  D  D  E  F  *  V  S  V  S  F  Y  Y  V  I  F  L  I  K  D  F  G  C  F  S  T  S  *  M  K  S  S  Q  L  L  L  F  C  S  F  S  *  A  *  I  V  </second_frame>
            <third_frame>   L  R  E  C  V  R  E  R  G  S  E  *  K  F  Q  S  F  I  A  S  I  E  F  N  R  R  *  S :   S  T  L  R  T  R  L  L  G  A  R  R  S  S  R  S  M  M  T  R  N   : S  E  L  S  L  T  R  G  S  P  R  R  L  A  E  M  L  W  E  R :   S  S  R  D  T  F  S  R  L  W  E  D  V  T  S  K  V  S  Q  *  S  R  E  C  *  L  Q  A  V  F  V  F  C  F  T  E  :  A  L  L  A  S  V  V  M  V  G  V  M  V  K  D  E  G  S  L  S  V  D  A  L  S  V  L  T  F  Q  F  *  I  W  L  L  *  R  R  E  R  M  I  F  L  D  *  Q  T  L  K  N  L  E  *  E  D  P  K  G  L  P  R  L  G  S  S  S  T  L  E  K  M  M  M  S  G  S  M  L  T  P  I  A  E  H  S  Q  T  K  R  :  G  K  R  L  A  R  L  L  R  S  R  G  W  *  H  H  *  L  F  R  G  R  E  Q  E  S  L  T  R  R  R  E  L  P  R  L  S  R  K  Q  L  T  I  R  S  F  *  R  L  G  *  R  N  R  E  K  G  E  V  R  V  W  L  R  R  G  L  D  F  L  L  P  P  S  H  L  L  L  L  K  I  I  S  K  E  A  I  S  D  I  C  L  L  K  K  V  I  F  V  I  S  C  F  F  *  C  S  E  M  M  S  F  K  L  V  Y  R  F  T  M  *  S  F  *  S  K  I  L  V  V  L  V  L  P  E  *  N  L  P  N  F  Y  Y  F  V  L  S  H  K  H  K  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36695" stop="36712"/>
                    <exon start="36824" stop="36888"/>
                    <exon start="38206" stop="38263"/>
                    <exon start="38361" stop="38469"/>
                    <exon start="38568" stop="38840"/>
                    <exon start="38918" stop="39156"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQSKMKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLGKDDDVRKYVNTYRRTFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRERRSESLAKKRSRLSAASKPSIAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36628" e_stop="36712"/>
            <exon e_start="36824" e_stop="36888"/>
            <exon e_start="38206" e_stop="38263"/>
            <exon e_start="38361" e_stop="38469"/>
            <exon e_start="38568" e_stop="39282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36628" e_stop="36712" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36824" e_stop="36888" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="36889" i_stop="38205" i_length="1317"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38206" e_stop="38263" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.884">
            <gDNA_intron_boundary i_start="38264" i_stop="38360" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38361" e_stop="38469" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38470" i_stop="38567" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="38568" e_stop="39282" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36628" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36639" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36641" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36642" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36644" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36645" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36645" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36646" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36647" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36648" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36650" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36651" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36651" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36651" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36651" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36653" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36653" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36653" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36653" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36654" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36657" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36657" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36658" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36664" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36677" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36697" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36699" stop="36712"/>
              <exon start="36824" stop="36888"/>
              <exon start="38206" stop="38263"/>
              <exon start="38361" stop="38381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38209" stop="38263"/>
              <exon start="38361" stop="38469"/>
              <exon start="38568" stop="38723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38714" stop="39282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTCAGAGAGTGTGTGAGAGAGAGAGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG : TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACT : CCGAGCTTTCTTTGACAAGAGGATCTCCCAGGAGGTTAGCGGAGATGCTTTGGGAGAG : GAGTTCAAGGGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTAACTCCAGGCCGTGTTCGTCTTCTGCTTCACAGAG : GCACTCCTTGCTTCCGTGGTTATGGTAGGCGTAATGGTGAAAGACGAAGGAAGTCTGTCCGTGGATGCATTGTCAGTCCTGACCTTTCAGTTCTGAATTTGGTTATTGTGAAGAAGGGAGAGAATGATCTTCCTGGACTGACAGACACTGAAAAACCTAGAATGAGAGGACCCAAAAGGGCTTCCAAGATTAGGAAGCTCTTCAACCTTGGAAAAGATGATGATGTCAGGAAGTATGTTAACACCTATCGCCGAACATTCACAAACAAAAAGGGTTCGTTTTCTACCAGTACTTCCATTTCGTTTGCAGTTACATTCTTGAACGTTGACTCTGGTGCTATGGTGATACAGGGAAAGAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTGGTAACACCATTGACTCTTCAGAGGAAGAGAGCAAGAATCGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCGGAAGCAGCTGACTATCAGAAGCTTTTAGCGTCTAGGTTGAAGGAACAGAGAGAAAGGCGAAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTTTCTGCTGCCTCCAAGCCATCTATTGCTGCTTAAGATCATTTCGAAAGAAGCAATCAGTGATATCTGTCTGCTTAAAAAGGTCATATTTGTGATATCTTGCTTTTTTTAATGTTCTGAGATGATGAGTTTTAAGTTAGTGTATCGTTTTACTATGTGATC</gDNA_template>
            <first_frame> S  S  E  S  V  *  E  R  E  A  Q  S  E  S  F  R  V  S  S  P  P  L  S  S  I  E  D  E   : V  Q  H  C  E  P  D  Y  W  V  P  E  E  A  R  D  R  *  *  P  E  T  :  P  S  F  L  *  Q  E  D  L  P  G  G  *  R  R  C  F  G  R   : G  V  Q  G  I  R  F  Q  D  Y  G  R  M  *  Q  A  R  F  P  N  E  A  G  S  V  N  S  R  P  C  S  S  S  A  S  Q  R :   H  S  L  L  P  W  L  W  *  A  *  W  *  K  T  K  E  V  C  P  W  M  H  C  Q  S  *  P  F  S  S  E  F  G  Y  C  E  E  G  R  E  *  S  S  W  T  D  R  H  *  K  T  *  N  E  R  T  Q  K  G  F  Q  D  *  E  A  L  Q  P  W  K  R  *  *  C  Q  E  V  C  *  H  L  S  P  N  I  H  K  Q  K  G  F  V  F  Y  Q  Y  F  H  F  V  C  S  Y  I  L  E  R  *  L  W  C  Y  G  D  T  G  K  E  V  S  K  A  P  K  I  Q  R  L  V  T  P  L  T  L  Q  R  K  R  A  R  I  A  D  K  K  K  R  I  A  K  A  K  S  E  A  A  D  Y  Q  K  L  L  A  S  R  L  K  E  Q  R  E  R  R  S  E  S  L  A  K  K  R  S  R  L  S  A  A  S  K  P  S  I  A  A  *  D  H  F  E  R  S  N  Q  *  Y  L  S  A  *  K  G  H  I  C  D  I  L  L  F  L  M  F  *  D  D  E  F  *  V  S  V  S  F  Y  Y  V  I </first_frame>
            <second_frame>  A  Q  R  V  C  E  R  E  R  L  R  V  K  V  S  E  F  H  R  L  H  *  V  Q  S  K  M  K  :  F  N  I  A  N  P  T  T  G  C  Q  K  K  L  E  I  D  D  D  Q  K  L :   R  A  F  F  D  K  R  I  S  Q  E  V  S  G  D  A  L  G  E  :  E  F  K  G  Y  V  F  K  I  M  G  G  C  D  K  Q  G  F  P  M  K  Q  G  V  L  T  P  G  R  V  R  L  L  L  H  R   : G  T  P  C  F  R  G  Y  G  R  R  N  G  E  R  R  R  K  S  V  R  G  C  I  V  S  P  D  L  S  V  L  N  L  V  I  V  K  K  G  E  N  D  L  P  G  L  T  D  T  E  K  P  R  M  R  G  P  K  R  A  S  K  I  R  K  L  F  N  L  G  K  D  D  D  V  R  K  Y  V  N  T  Y  R  R  T  F  T  N  K  K  G  S  F  S  T  S  T  S  I  S  F  A  V  T  F  L  N  V  D  S  G  A  M  V  I  Q  G  K  R  L  A  R  L  L  R  S  R  G  W  *  H  H  *  L  F  R  G  R  E  Q  E  S  L  T  R  R  R  E  L  P  R  L  S  R  K  Q  L  T  I  R  S  F  *  R  L  G  *  R  N  R  E  K  G  E  V  R  V  W  L  R  R  G  L  D  F  L  L  P  P  S  H  L  L  L  L  K  I  I  S  K  E  A  I  S  D  I  C  L  L  K  K  V  I  F  V  I  S  C  F  F  *  C  S  E  M  M  S  F  K  L  V  Y  R  F  T  M  *   </second_frame>
            <third_frame>   L  R  E  C  V  R  E  R  G  S  E  *  K  F  Q  S  F  I  A  S  I  E  F  N  R  R  *  S :   S  T  L  R  T  R  L  L  G  A  R  R  S  S  R  S  M  M  T  R  N   : S  E  L  S  L  T  R  G  S  P  R  R  L  A  E  M  L  W  E  R :   S  S  R  D  T  F  S  R  L  W  E  D  V  T  S  K  V  S  Q  *  S  R  E  C  *  L  Q  A  V  F  V  F  C  F  T  E  :  A  L  L  A  S  V  V  M  V  G  V  M  V  K  D  E  G  S  L  S  V  D  A  L  S  V  L  T  F  Q  F  *  I  W  L  L  *  R  R  E  R  M  I  F  L  D  *  Q  T  L  K  N  L  E  *  E  D  P  K  G  L  P  R  L  G  S  S  S  T  L  E  K  M  M  M  S  G  S  M  L  T  P  I  A  E  H  S  Q  T  K  R  V  R  F  L  P  V  L  P  F  R  L  Q  L  H  S  *  T  L  T  L  V  L  W  *  Y  R  E  R  G  *  Q  G  S  *  D  P  E  A  G  N  T  I  D  S  S  E  E  E  S  K  N  R  *  Q  E  E  E  N  C  Q  G  *  V  G  S  S  *  L  S  E  A  F  S  V  *  V  E  G  T  E  R  K  A  K  *  E  F  G  *  E  E  V  *  T  F  C  C  L  Q  A  I  Y  C  C  L  R  S  F  R  K  K  Q  S  V  I  S  V  C  L  K  R  S  Y  L  *  Y  L  A  F  F  N  V  L  R  *  *  V  L  S  *  C  I  V  L  L  C  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36695" stop="36712"/>
                    <exon start="36824" stop="36888"/>
                    <exon start="38206" stop="38263"/>
                    <exon start="38361" stop="38469"/>
                    <exon start="38568" stop="38959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQSKMKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLGKDDDVRKYVNTYRRTFTNKKGSFSTSTSISFAVTFLNVDSGAMVIQGKRLARLLRSRGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36653" e_stop="36712"/>
            <exon e_start="36824" e_stop="37498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36653" e_stop="36712" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36713" i_stop="36823" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36824" e_stop="37498" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36653" stop="36712"/>
              <exon start="36824" stop="37498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTCAGAGTGAAAGTTTCAGAGTTTCATCGCCTCCATTGAGTTCAATCGAAGATGAAG : TTCAACATTGCGAACCCGACTACTGGGTGCCAGAAGAAGCTCGAGATCGATGATGACCAGAAACTGTAAGGCTATCATATTCCTTTTGTGAAATGTAATGGGATTTGCTGTTTTCGGTGTAATTTTTTTTATGTTTCATTGTTAGATATCTATGTGTGGAGAATTAAACTCAAATTGTACAATTCTGCTGTTAATATCCTTTAAAAGTATACAGTTATCGAAGTTTGTAGTAAGCTGAATGATTTGAGGTTTTGTTATTATAGGATCTGTGTGTTATATACAGTGTTTTTACATGAACTTTAGTATGGAATAAGCTAAGATGTATTACCATAGCTGAACAAGTATCAACAGCCACAAAGTAATGGTATATGGAGCTTAGAGTGTATACAGACCTTACTCCTACCTCTGAGAAGGTAGATATAGTGTTTTCGATATGGAGAAGAGTTGATTGCAACAACTTGAAGATAGGTAGATATCAATAATGTAATTTGCAATGCTACTTGAACAAACAAGTAAATGACAGTAATGTAATTTGCAATGCTAGTTGTGTATTTTGCTATTGATTATCTCTCATTTGTTTCTAGTAAATTTTCGTTGTTATGATTTTGAAGTTGGAAAAATTTAATCCATTCAACCTTATATATCCATTTACCTCATATTTAGTTGACTGGCATT</gDNA_template>
            <first_frame> R  L  R  V  K  V  S  E  F  H  R  L  H  *  V  Q  S  K  M  K  :  F  N  I  A  N  P  T  T  G  C  Q  K  K  L  E  I  D  D  D  Q  K  L  *  G  Y  H  I  P  F  V  K  C  N  G  I  C  C  F  R  C  N  F  F  Y  V  S  L  L  D  I  Y  V  W  R  I  K  L  K  L  Y  N  S  A  V  N  I  L  *  K  Y  T  V  I  E  V  C  S  K  L  N  D  L  R  F  C  Y  Y  R  I  C  V  L  Y  T  V  F  L  H  E  L  *  Y  G  I  S  *  D  V  L  P  *  L  N  K  Y  Q  Q  P  Q  S  N  G  I  W  S  L  E  C  I  Q  T  L  L  L  P  L  R  R  *  I  *  C  F  R  Y  G  E  E  L  I  A  T  T  *  R  *  V  D  I  N  N  V  I  C  N  A  T  *  T  N  K  *  M  T  V  M  *  F  A  M  L  V  V  Y  F  A  I  D  Y  L  S  F  V  S  S  K  F  S  L  L  *  F  *  S  W  K  N  L  I  H  S  T  L  Y  I  H  L  P  H  I  *  L  T  G  I </first_frame>
            <second_frame>  G  S  E  *  K  F  Q  S  F  I  A  S  I  E  F  N  R  R  *  S :   S  T  L  R  T  R  L  L  G  A  R  R  S  S  R  S  M  M  T  R  N  C  K  A  I  I  F  L  L  *  N  V  M  G  F  A  V  F  G  V  I  F  F  M  F  H  C  *  I  S  M  C  G  E  L  N  S  N  C  T  I  L  L  L  I  S  F  K  S  I  Q  L  S  K  F  V  V  S  *  M  I  *  G  F  V  I  I  G  S  V  C  Y  I  Q  C  F  Y  M  N  F  S  M  E  *  A  K  M  Y  Y  H  S  *  T  S  I  N  S  H  K  V  M  V  Y  G  A  *  S  V  Y  R  P  Y  S  Y  L  *  E  G  R  Y  S  V  F  D  M  E  K  S  *  L  Q  Q  L  E  D  R  *  I  S  I  M  *  F  A  M  L  L  E  Q  T  S  K  *  Q  *  C  N  L  Q  C  *  L  C  I  L  L  L  I  I  S  H  L  F  L  V  N  F  R  C  Y  D  F  E  V  G  K  I  *  S  I  Q  P  Y  I  S  I  Y  L  I  F  S  *  L  A   </second_frame>
            <third_frame>   A  Q  S  E  S  F  R  V  S  S  P  P  L  S  S  I  E  D  E   : V  Q  H  C  E  P  D  Y  W  V  P  E  E  A  R  D  R  *  *  P  E  T  V  R  L  S  Y  S  F  C  E  M  *  W  D  L  L  F  S  V  *  F  F  L  C  F  I  V  R  Y  L  C  V  E  N  *  T  Q  I  V  Q  F  C  C  *  Y  P  L  K  V  Y  S  Y  R  S  L  *  *  A  E  *  F  E  V  L  L  L  *  D  L  C  V  I  Y  S  V  F  T  *  T  L  V  W  N  K  L  R  C  I  T  I  A  E  Q  V  S  T  A  T  K  *  W  Y  M  E  L  R  V  Y  T  D  L  T  P  T  S  E  K  V  D  I  V  F  S  I  W  R  R  V  D  C  N  N  L  K  I  G  R  Y  Q  *  C  N  L  Q  C  Y  L  N  K  Q  V  N  D  S  N  V  I  C  N  A  S  C  V  F  C  Y  *  L  S  L  I  C  F  *  *  I  F  V  V  M  I  L  K  L  E  K  F  N  P  F  N  L  I  Y  P  F  T  S  Y  L  V  D  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0067C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="39645" PGL_stop="38963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39645" e_stop="39638"/>
            <exon e_start="39344" e_stop="38963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="39645" e_stop="39638" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39637" i_stop="39345" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39344" e_stop="38963" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39645" stop="39638"/>
              <exon start="39344" stop="38963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTTGTT : AATAAAAGTTGGGAAGATTTCATTCAGGAAGTACTAAAACAACCAAAATCTTTGATCAGAAAGATCACATAGTAAAACGATACACTAACTTAAAACTCATCATCTCAGAACATTAAAAAAAGCAAGATATCACAAATATGACCTTTTTAAGCAGACAGATATCACTGATTGCTTCTTTCGAAATGATCTTAAGCAGCAATAGATGGCTTGGAGGCAGCAGAAAGTCTAGACCTCTTCTTAGCCAAACTCTCACTTCGCCTTTCTCTCTGTTCCTTCAACCTAGACGCTAAAAGCTTCTGATAGTCAGCTGCTTCCGACTTAGCCTTGGCAATTCTCTTCTTCTTGTCAGCGATTCTTGCTCTCTTCCTCTGAAGAGTCAATG</gDNA_template>
            <first_frame> S  L  L :   I  K  V  G  K  I  S  F  R  K  Y  *  N  N  Q  N  L  *  S  E  R  S  H  S  K  T  I  H  *  L  K  T  H  H  L  R  T  L  K  K  A  R  Y  H  K  Y  D  L  F  K  Q  T  D  I  T  D  C  F  F  R  N  D  L  K  Q  Q  *  M  A  W  R  Q  Q  K  V  *  T  S  S  *  P  N  S  H  F  A  F  L  S  V  P  S  T  *  T  L  K  A  S  D  S  Q  L  L  P  T  *  P  W  Q  F  S  S  S  C  Q  R  F  L  L  S  S  S  E  E  S  M </first_frame>
            <second_frame>  R  C   : *  *  K  L  G  R  F  H  S  G  S  T  K  T  T  K  I  F  D  Q  K  D  H  I  V  K  R  Y  T  N  L  K  L  I  I  S  E  H  *  K  K  Q  D  I  T  N  M  T  F  L  S  R  Q  I  S  L  I  A  S  F  E  M  I  L  S  S  N  R  W  L  G  G  S  R  K  S  R  P  L  L  S  Q  T  L  T  S  P  F  S  L  F  L  Q  P  R  R  *  K  L  L  I  V  S  C  F  R  L  S  L  G  N  S  L  L  L  V  S  D  S  C  S  L  P  L  K  S  Q   </second_frame>
            <third_frame>   V  V  :  N  K  S  W  E  D  F  I  Q  E  V  L  K  Q  P  K  S  L  I  R  K  I  T  *  *  N  D  T  L  T  *  N  S  S  S  Q  N  I  K  K  S  K  I  S  Q  I  *  P  F  *  A  D  R  Y  H  *  L  L  L  S  K  *  S  *  A  A  I  D  G  L  E  A  A  E  S  L  D  L  F  L  A  K  L  S  L  R  L  S  L  C  S  F  N  L  D  A  K  S  F  *  *  S  A  A  S  D  L  A  L  A  I  L  F  F  L  S  A  I  L  A  L  F  L  *  R  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0067C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45694" PGL_stop="50372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45919" e_stop="46161"/>
            <exon e_start="46580" e_stop="46838"/>
            <exon e_start="46983" e_stop="47045"/>
            <exon e_start="48713" e_stop="48777"/>
            <exon e_start="49253" e_stop="49366"/>
            <exon e_start="49562" e_stop="49576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.706" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.444" acc_prob="0.993" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="46161" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.706" acc_prob="0.850">
            <gDNA_intron_boundary i_start="46162" i_stop="46579" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46580" e_stop="46838" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46983" e_stop="47045" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47046" i_stop="48712" i_length="1667"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48713" e_stop="48777" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="49253" e_stop="49366" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.444" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49562" e_stop="49576" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45919" stop="46161"/>
              <exon start="46580" stop="46838"/>
              <exon start="46983" stop="47045"/>
              <exon start="48713" stop="48777"/>
              <exon start="49253" stop="49366"/>
              <exon start="49562" stop="49576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45920" stop="46161"/>
              <exon start="46580" stop="46738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAAT : GGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG : GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG : GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT : TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG : GCAATGCGATCATCT</gDNA_template>
            <first_frame> F  P  N  H  T  S  Y  V  V  V  V  K  F  E  S  L  C  I  R  W  V  L  F  *  S  A  *  D  S  R  F  C  N  G  S  A  D  Y  *  R  C  E  V  F  I  F  S  R  I  C  L  L  M  *  S  L  N  L  Y  K  L  G  F  L  N  Q  L  R  V  Q  D  S  L  M  G  Q  L  I  T  E  N  :  G  S  R  F  S  K  G  E  I  D  Y  *  R  *  L  Q  M  E  I  A  H  K  R  K  R  R  K  L  *  N  I  E  V  C  W  W  G  *  L  K  F  F  K  R  *  F  I  Y  C  L  W  H  S  C  C  V  G  L  D  D  S  E  S  C  L  *  R  F  V  Y  C  *  A  S  H  S  I  S  S  W  L  P  C  F  Q  R   : G  S  C  A  S  G  T  F  G  *  N  E  E  Q  C  S  L  F  L  P  A   : G  F  G  L  A  C  H  I  G  V  L  A  D  L  P  T  V  G  V  G  K  N  :  L  H  H  V  D  G  L  T  Q  S  T  V  R  E  L  L  Q  A  A  D  S  P  E  H  I  L  P  L  I  G  D  S  G  C  I  W  G  A  :  A  M  R  S  S </first_frame>
            <second_frame>  F  R  I  I  L  A  T  L  L  L  *  S  L  N  L  Y  V  L  G  G  Y  C  F  N  Q  L  R  I  Q  G  S  V  M  G  Q  L  I  T  E  D  V  K  F  L  S  L  V  E  F  V  C  S  C  K  V  *  I  F  T  S  W  A  F  *  I  S  L  E  F  K  I  L  *  W  G  N  *  L  L  K  M :   V  Q  D  S  L  K  G  K  L  I  T  E  D  D  F  K  W  R  L  P  T  R  E  K  E  G  S  C  E  I  L  K  Y  V  G  G  V  D  L  S  F  S  K  D  D  S  S  I  A  C  G  T  L  V  V  L  D  L  T  T  Q  K  V  V  Y  E  D  S  S  I  V  R  L  H  I  P  Y  L  P  G  F  L  A  F  R  E  :  A  P  V  L  L  E  L  L  D  K  M  K  N  N  A  H  C  F  Y  P  Q  :  V  L  V  W  L  V  I  L  V  S  *  L  I  F  L  L  L  G  W  E  R  I :   Y  T  T  L  M  V  L  H  N  L  R  *  E  N  S  F  K  Q  Q  T  L  P  N  I  S  Y  R  *  L  G  T  L  D  V  S  G  E  R :   Q  C  D  H   </second_frame>
            <third_frame>   S  E  S  Y  *  L  R  C  C  C  K  V  *  I  F  M  Y  *  V  G  T  V  L  I  S  L  G  F  K  V  L  *  W  V  S  *  L  L  K  M  *  S  F  Y  L  *  *  N  L  F  A  H  V  K  F  E  S  L  Q  V  G  L  F  E  S  A  *  S  S  R  F  S  N  G  A  T  D  Y  *  K   : W  F  K  I  L  *  R  G  N  *  L  L  K  M  T  S  N  G  D  C  P  Q  E  K  K  K  E  V  V  K  Y  *  S  M  L  V  G  L  T  *  V  F  Q  K  M  I  H  L  L  P  V  A  L  L  L  C  W  T  *  R  L  R  K  L  F  M  K  I  R  L  L  L  G  F  T  F  H  I  F  L  A  S  L  L  S  E  R :   L  L  C  F  W  N  F  W  I  K  *  R  T  M  L  I  V  S  T  R  R :   F  W  F  G  L  S  Y  W  C  L  S  *  S  S  Y  C  W  G  G  K  E   : F  T  P  R  *  W  S  Y  T  I  Y  G  K  R  T  P  S  S  S  R  L  S  R  T  Y  L  T  A  N  W  G  L  W  M  Y  L  G  S   : G  N  A  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46151" stop="46161"/>
                    <exon start="46580" stop="46838"/>
                    <exon start="46983" stop="47045"/>
                    <exon start="48713" stop="48745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKMVQDSLKGKLITEDDFKWRLPTREKEGSCEILKYVGGVDLSFSKDDSSIACGTLVVLDLTTQKVVYEDSSIVRLHIPYLPGFLAFREAPVLLELLDKMKNNAHCFYPQVLVWLVILVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46489" e_stop="46498"/>
            <exon e_start="46580" e_stop="46838"/>
            <exon e_start="46983" e_stop="47045"/>
            <exon e_start="48713" e_stop="48777"/>
            <exon e_start="49253" e_stop="49366"/>
            <exon e_start="49562" e_stop="49690"/>
            <exon e_start="49889" e_stop="50372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.359" acc_prob="0.850" e_score="0.800"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.444" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="46489" e_stop="46498" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.359" acc_prob="0.850">
            <gDNA_intron_boundary i_start="46499" i_stop="46579" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="46580" e_stop="46838" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46983" e_stop="47045" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47046" i_stop="48712" i_length="1667"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48713" e_stop="48777" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49253" e_stop="49366" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.444" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49562" e_stop="49690" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49691" i_stop="49888" i_length="198"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49889" e_stop="50372" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46489" stop="46498"/>
              <exon start="46580" stop="46838"/>
              <exon start="46983" stop="47045"/>
              <exon start="48713" stop="48777"/>
              <exon start="49253" stop="49366"/>
              <exon start="49562" stop="49690"/>
              <exon start="49889" stop="50042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49900" stop="50372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGAAGAT : GGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG : GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG : GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT : TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG : GCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTATTTCAGTTGGTCACCGTATATCTCTCGCCAGTGCCATTGCAATTGTGAGGATGACTTGCAAATTTCGTGTTCCAGAGCCCATCCGGCAG : GCTGATATAAGATCGAGGGAGCGCCTGCGGAACAATCAATGATTATGTACACAATCGTTTCTCTGTATATTTGCTGAGTTTTGGTGAACTATGAGTACCATGGAAATTTCTGTAATATTTCATAAACTTGACTATAAGAATCTGGTATTGGTAGGTGTATTTTTTGCTATGTTTGCTCCTACTCTTTTAAAATATCGATGTTTGCGTGTCGGATCCTCAGCTCCAAAGGTAATGCAATTTTGGAGGATTCAACATAAGTACAACAACATTTTAGAAAAATCCGAGCAAAATAGTTGATAAATGTTCCAATAATATTTTGATGAACCTAGCATATTGGAGGTATTTATTCACAATTCTTTTGTAGGCATATATATCCTTTATACTTTACTTCAACTGATATTTATACTCCAACTTTAAATGTATGTAAAGTATACTTAAACTTGTATAAAATTGAGCTAGTAGACACAGTTCTATGTGTATTATA</gDNA_template>
            <first_frame> Y  *  R   : W  F  K  I  L  *  R  G  N  *  L  L  K  M  T  S  N  G  D  C  P  Q  E  K  K  K  E  V  V  K  Y  *  S  M  L  V  G  L  T  *  V  F  Q  K  M  I  H  L  L  P  V  A  L  L  L  C  W  T  *  R  L  R  K  L  F  M  K  I  R  L  L  L  G  F  T  F  H  I  F  L  A  S  L  L  S  E  R :   L  L  C  F  W  N  F  W  I  K  *  R  T  M  L  I  V  S  T  R  R :   F  W  F  G  L  S  Y  W  C  L  S  *  S  S  Y  C  W  G  G  K  E   : F  T  P  R  *  W  S  Y  T  I  Y  G  K  R  T  P  S  S  S  R  L  S  R  T  Y  L  T  A  N  W  G  L  W  M  Y  L  G  S   : G  N  A  I  I  *  G  L  F  E  A  H  I  Y  F  S  W  S  P  Y  I  S  R  Q  C  H  C  N  C  E  D  D  L  Q  I  S  C  S  R  A  H  P  A   : G  *  Y  K  I  E  G  A  P  A  E  Q  S  M  I  M  Y  T  I  V  S  L  Y  I  C  *  V  L  V  N  Y  E  Y  H  G  N  F  C  N  I  S  *  T  *  L  *  E  S  G  I  G  R  C  I  F  C  Y  V  C  S  Y  S  F  K  I  S  M  F  A  C  R  I  L  S  S  K  G  N  A  I  L  E  D  S  T  *  V  Q  Q  H  F  R  K  I  R  A  K  *  L  I  N  V  P  I  I  F  *  *  T  *  H  I  G  G  I  Y  S  Q  F  F  C  R  H  I  Y  P  L  Y  F  T  S  T  D  I  Y  T  P  T  L  N  V  C  K  V  Y  L  N  L  Y  K  I  E  L  V  D  T  V  L  C  V  L   </first_frame>
            <second_frame>  I  E  D  :  G  S  R  F  S  K  G  E  I  D  Y  *  R  *  L  Q  M  E  I  A  H  K  R  K  R  R  K  L  *  N  I  E  V  C  W  W  G  *  L  K  F  F  K  R  *  F  I  Y  C  L  W  H  S  C  C  V  G  L  D  D  S  E  S  C  L  *  R  F  V  Y  C  *  A  S  H  S  I  S  S  W  L  P  C  F  Q  R   : G  S  C  A  S  G  T  F  G  *  N  E  E  Q  C  S  L  F  L  P  A   : G  F  G  L  A  C  H  I  G  V  L  A  D  L  P  T  V  G  V  G  K  N  :  L  H  H  V  D  G  L  T  Q  S  T  V  R  E  L  L  Q  A  A  D  S  P  E  H  I  L  P  L  I  G  D  S  G  C  I  W  G  A  :  A  M  R  S  S  E  G  S  L  K  P  I  F  I  S  V  G  H  R  I  S  L  A  S  A  I  A  I  V  R  M  T  C  K  F  R  V  P  E  P  I  R  Q  :  A  D  I  R  S  R  E  R  L  R  N  N  Q  *  L  C  T  Q  S  F  L  C  I  F  A  E  F  W  *  T  M  S  T  M  E  I  S  V  I  F  H  K  L  D  Y  K  N  L  V  L  V  G  V  F  F  A  M  F  A  P  T  L  L  K  Y  R  C  L  R  V  G  S  S  A  P  K  V  M  Q  F  W  R  I  Q  H  K  Y  N  N  I  L  E  K  S  E  Q  N  S  *  *  M  F  Q  *  Y  F  D  E  P  S  I  L  E  V  F  I  H  N  S  F  V  G  I  Y  I  L  Y  T  L  L  Q  L  I  F  I  L  Q  L  *  M  Y  V  K  Y  T  *  T  C  I  K  L  S  *  *  T  Q  F  Y  V  Y  Y  </second_frame>
            <third_frame>   L  K  M :   V  Q  D  S  L  K  G  K  L  I  T  E  D  D  F  K  W  R  L  P  T  R  E  K  E  G  S  C  E  I  L  K  Y  V  G  G  V  D  L  S  F  S  K  D  D  S  S  I  A  C  G  T  L  V  V  L  D  L  T  T  Q  K  V  V  Y  E  D  S  S  I  V  R  L  H  I  P  Y  L  P  G  F  L  A  F  R  E  :  A  P  V  L  L  E  L  L  D  K  M  K  N  N  A  H  C  F  Y  P  Q  :  V  L  V  W  L  V  I  L  V  S  *  L  I  F  L  L  L  G  W  E  R  I :   Y  T  T  L  M  V  L  H  N  L  R  *  E  N  S  F  K  Q  Q  T  L  P  N  I  S  Y  R  *  L  G  T  L  D  V  S  G  E  R :   Q  C  D  H  L  R  A  L  *  S  P  Y  L  F  Q  L  V  T  V  Y  L  S  P  V  P  L  Q  L  *  G  *  L  A  N  F  V  F  Q  S  P  S  G  R :   L  I  *  D  R  G  S  A  C  G  T  I  N  D  Y  V  H  N  R  F  S  V  Y  L  L  S  F  G  E  L  *  V  P  W  K  F  L  *  Y  F  I  N  L  T  I  R  I  W  Y  W  *  V  Y  F  L  L  C  L  L  L  L  F  *  N  I  D  V  C  V  S  D  P  Q  L  Q  R  *  C  N  F  G  G  F  N  I  S  T  T  T  F  *  K  N  P  S  K  I  V  D  K  C  S  N  N  I  L  M  N  L  A  Y  W  R  Y  L  F  T  I  L  L  *  A  Y  I  S  F  I  L  Y  F  N  *  Y  L  Y  S  N  F  K  C  M  *  S  I  L  K  L  V  *  N  *  A  S  R  H  S  S  M  C  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47012" stop="47045"/>
                    <exon start="48713" stop="48777"/>
                    <exon start="49253" stop="49366"/>
                    <exon start="49562" stop="49690"/>
                    <exon start="49889" stop="49930"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEEQCSLFLPAGFGLACHIGVLADLPTVGVGKNLHHVDGLTQSTVRELLQAADSPEHILPLIGDSGCIWGAAMRSSEGSLKPIFISVGHRISLASAIAIVRMTCKFRVPEPIRQADIRSRERLRNNQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46491" stop="46498"/>
                    <exon start="46580" stop="46838"/>
                    <exon start="46983" stop="47045"/>
                    <exon start="48713" stop="48745"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMVQDSLKGKLITEDDFKWRLPTREKEGSCEILKYVGGVDLSFSKDDSSIACGTLVVLDLTTQKVVYEDSSIVRLHIPYLPGFLAFREAPVLLELLDKMKNNAHCFYPQVLVWLVILVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49976" stop="50185"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSTMEISVIFHKLDYKNLVLVGVFFAMFAPTLLKYRCLRVGSSAPKVMQFWRIQHKYNNILEKSEQNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45694" e_stop="45745"/>
            <exon e_start="46575" e_stop="46838"/>
            <exon e_start="46983" e_stop="47045"/>
            <exon e_start="47678" e_stop="47717"/>
            <exon e_start="48713" e_stop="48777"/>
            <exon e_start="49253" e_stop="49366"/>
            <exon e_start="49562" e_stop="49601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.444" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45694" e_stop="45745" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.924">
            <gDNA_intron_boundary i_start="45746" i_stop="46574" i_length="829"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46575" e_stop="46838" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46983" e_stop="47045" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.894">
            <gDNA_intron_boundary i_start="47046" i_stop="47677" i_length="632"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47678" e_stop="47717" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47718" i_stop="48712" i_length="995"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48713" e_stop="48777" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49253" e_stop="49366" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.444" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49562" e_stop="49601" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45694" stop="45745"/>
              <exon start="46575" stop="46838"/>
              <exon start="46983" stop="47045"/>
              <exon start="47678" stop="47717"/>
              <exon start="48713" stop="48777"/>
              <exon start="49253" stop="49366"/>
              <exon start="49562" stop="49601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATCAGTAATTTCTCTAATGAATTTCAAAGTTCACAACAAATGGATTGG : CTCAGGGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG : GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG : CTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAG : GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT : TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG : GCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTA</gDNA_template>
            <first_frame> F  N  Q  *  F  L  *  *  I  S  K  F  T  T  N  G  L   : A  Q  G  S  R  F  S  K  G  E  I  D  Y  *  R  *  L  Q  M  E  I  A  H  K  R  K  R  R  K  L  *  N  I  E  V  C  W  W  G  *  L  K  F  F  K  R  *  F  I  Y  C  L  W  H  S  C  C  V  G  L  D  D  S  E  S  C  L  *  R  F  V  Y  C  *  A  S  H  S  I  S  S  W  L  P  C  F  Q  R   : G  S  C  A  S  G  T  F  G  *  N  E  E  Q  C  S  L  F  L  P  A   : A  T  N  G  *  W  Q  W  I  A  S  S  S  R :   F  W  F  G  L  S  Y  W  C  L  S  *  S  S  Y  C  W  G  G  K  E   : F  T  P  R  *  W  S  Y  T  I  Y  G  K  R  T  P  S  S  S  R  L  S  R  T  Y  L  T  A  N  W  G  L  W  M  Y  L  G  S   : G  N  A  I  I  *  G  L  F  E  A  H  I   </first_frame>
            <second_frame>  S  I  S  N  F  S  N  E  F  Q  S  S  Q  Q  M  D  W  :  L  R  V  Q  D  S  L  K  G  K  L  I  T  E  D  D  F  K  W  R  L  P  T  R  E  K  E  G  S  C  E  I  L  K  Y  V  G  G  V  D  L  S  F  S  K  D  D  S  S  I  A  C  G  T  L  V  V  L  D  L  T  T  Q  K  V  V  Y  E  D  S  S  I  V  R  L  H  I  P  Y  L  P  G  F  L  A  F  R  E  :  A  P  V  L  L  E  L  L  D  K  M  K  N  N  A  H  C  F  Y  P  Q  :  L  L  M  V  D  G  N  G  L  L  H  P  R   : G  F  G  L  A  C  H  I  G  V  L  A  D  L  P  T  V  G  V  G  K  N  :  L  H  H  V  D  G  L  T  Q  S  T  V  R  E  L  L  Q  A  A  D  S  P  E  H  I  L  P  L  I  G  D  S  G  C  I  W  G  A  :  A  M  R  S  S  E  G  S  L  K  P  I  F  </second_frame>
            <third_frame>   Q  S  V  I  S  L  M  N  F  K  V  H  N  K  W  I  G :   S  G  F  K  I  L  *  R  G  N  *  L  L  K  M  T  S  N  G  D  C  P  Q  E  K  K  K  E  V  V  K  Y  *  S  M  L  V  G  L  T  *  V  F  Q  K  M  I  H  L  L  P  V  A  L  L  L  C  W  T  *  R  L  R  K  L  F  M  K  I  R  L  L  L  G  F  T  F  H  I  F  L  A  S  L  L  S  E  R :   L  L  C  F  W  N  F  W  I  K  *  R  T  M  L  I  V  S  T  R  S :   Y  *  W  L  M  A  M  D  C  F  I  L  E  :  V  L  V  W  L  V  I  L  V  S  *  L  I  F  L  L  L  G  W  E  R  I :   Y  T  T  L  M  V  L  H  N  L  R  *  E  N  S  F  K  Q  Q  T  L  P  N  I  S  Y  R  *  L  G  T  L  D  V  S  G  E  R :   Q  C  D  H  L  R  A  L  *  S  P  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45695" stop="45745"/>
                    <exon start="46575" stop="46838"/>
                    <exon start="46983" stop="47045"/>
                    <exon start="47678" stop="47717"/>
                    <exon start="48713" stop="48777"/>
                    <exon start="49253" stop="49366"/>
                    <exon start="49562" stop="49600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISNFSNEFQSSQQMDWLRVQDSLKGKLITEDDFKWRLPTREKEGSCEILKYVGGVDLSFSKDDSSIACGTLVVLDLTTQKVVYEDSSIVRLHIPYLPGFLAFREAPVLLELLDKMKNNAHCFYPQLLMVDGNGLLHPRGFGLACHIGVLADLPTVGVGKNLHHVDGLTQSTVRELLQAADSPEHILPLIGDSGCIWGAAMRSSEGSLKPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="51065" PGL_stop="52759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51065" e_stop="51297"/>
            <exon e_start="51385" e_stop="51437"/>
            <exon e_start="52161" e_stop="52205"/>
            <exon e_start="52349" e_stop="52759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51065" e_stop="51297" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51298" i_stop="51384" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51385" e_stop="51437" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51438" i_stop="52160" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52161" e_stop="52205" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52206" i_stop="52348" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="52349" e_stop="52759" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51065" stop="51297"/>
              <exon start="51385" stop="51407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51075" stop="51297"/>
              <exon start="51385" stop="51437"/>
              <exon start="52161" stop="52205"/>
              <exon start="52349" stop="52759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATACAAATCGATCTCCATTTCCTCCATCTCTCTTCAAGCTCTAATTTTGAAGCTTTAATGGAGTCGTCGTCGTCATCACCAGCTTCACGAGAACTGGATGAGGTACAAACAGATCTTCCTTCATCTGTAAGATCCGCTTCGAGAATCAGAGCTCCGAATAATATGGTTATGGGGAAACATCGTCTTGCTGCTGCAATTTCTGCTCTCAATCAACAAATCAACATCATTCAG : GAAGAATTGGATCAGCTTGACTCGTTTGGTGAAGCTTCACTCGTTTGCAGAGA : ATTAGTTTCAAGTGTTGAGTTAATACCTGATGCTCTCCTTCCAGT : GACTAGAGGACCAATAAATGTTCATTTAGATAGATGGTTTCATGGAGTTAACGATTCAAGACGCAACAAACGCTGGATATGAAAAAGGAATTTGTACCAAAAACTACGTAAATCAATTCGAATACCCTCTTCTTTTTTTGGTTTATTTTGTAATTAAATTTTTAAATTTCTTTGTTTTCTTGACTGCTATATTATTAGGTCTTTATATTCTATATATATCTGCTGTTGAATATTGCTGATGAAATAATGTAGGTAAGTATGTTTTGTAACTCATACACTTCCCAAGTATTAATAAAAGTGTGTTATATGCACAAAAAATTGTTTCAACTTGACAAAAAAATCGTATTTAAGTAGATAAGGATAGAAGAGACGATCCATATTATATCGAGACTGTAACTGTGGAGTTTACTG</gDNA_template>
            <first_frame> K  Y  K  S  I  S  I  S  S  I  S  L  Q  A  L  I  L  K  L  *  W  S  R  R  R  H  H  Q  L  H  E  N  W  M  R  Y  K  Q  I  F  L  H  L  *  D  P  L  R  E  S  E  L  R  I  I  W  L  W  G  N  I  V  L  L  L  Q  F  L  L  S  I  N  K  S  T  S  F  R :   K  N  W  I  S  L  T  R  L  V  K  L  H  S  F  A  E   : N  *  F  Q  V  L  S  *  Y  L  M  L  S  F  Q   : *  L  E  D  Q  *  M  F  I  *  I  D  G  F  M  E  L  T  I  Q  D  A  T  N  A  G  Y  E  K  G  I  C  T  K  N  Y  V  N  Q  F  E  Y  P  L  L  F  L  V  Y  F  V  I  K  F  L  N  F  F  V  F  L  T  A  I  L  L  G  L  Y  I  L  Y  I  S  A  V  E  Y  C  *  *  N  N  V  G  K  Y  V  L  *  L  I  H  F  P  S  I  N  K  S  V  L  Y  A  Q  K  I  V  S  T  *  Q  K  N  R  I  *  V  D  K  D  R  R  D  D  P  Y  Y  I  E  T  V  T  V  E  F  T  </first_frame>
            <second_frame>  N  T  N  R  S  P  F  P  P  S  L  F  K  L  *  F  *  S  F  N  G  V  V  V  V  I  T  S  F  T  R  T  G  *  G  T  N  R  S  S  F  I  C  K  I  R  F  E  N  Q  S  S  E  *  Y  G  Y  G  E  T  S  S  C  C  C  N  F  C  S  Q  S  T  N  Q  H  H  S   : G  R  I  G  S  A  *  L  V  W  *  S  F  T  R  L  Q  R  :  I  S  F  K  C  *  V  N  T  *  C  S  P  S  S  :  D  *  R  T  N  K  C  S  F  R  *  M  V  S  W  S  *  R  F  K  T  Q  Q  T  L  D  M  K  K  E  F  V  P  K  T  T  *  I  N  S  N  T  L  F  F  F  W  F  I  L  *  L  N  F  *  I  S  L  F  S  *  L  L  Y  Y  *  V  F  I  F  Y  I  Y  L  L  L  N  I  A  D  E  I  M  *  V  S  M  F  C  N  S  Y  T  S  Q  V  L  I  K  V  C  Y  M  H  K  K  L  F  Q  L  D  K  K  I  V  F  K  *  I  R  I  E  E  T  I  H  I  I  S  R  L  *  L  W  S  L  L </second_frame>
            <third_frame>   I  Q  I  D  L  H  F  L  H  L  S  S  S  S  N  F  E  A  L  M  E  S  S  S  S  S  P  A  S  R  E  L  D  E  V  Q  T  D  L  P  S  S  V  R  S  A  S  R  I  R  A  P  N  N  M  V  M  G  K  H  R  L  A  A  A  I  S  A  L  N  Q  Q  I  N  I  I  Q  :  E  E  L  D  Q  L  D  S  F  G  E  A  S  L  V  C  R  E :   L  V  S  S  V  E  L  I  P  D  A  L  L  P  V :   T  R  G  P  I  N  V  H  L  D  R  W  F  H  G  V  N  D  S  R  R  N  K  R  W  I  *  K  R  N  L  Y  Q  K  L  R  K  S  I  R  I  P  S  S  F  F  G  L  F  C  N  *  I  F  K  F  L  C  F  L  D  C  Y  I  I  R  S  L  Y  S  I  Y  I  C  C  *  I  L  L  M  K  *  C  R  *  V  C  F  V  T  H  T  L  P  K  Y  *  *  K  C  V  I  C  T  K  N  C  F  N  L  T  K  K  S  Y  L  S  R  *  G  *  K  R  R  S  I  L  Y  R  D  C  N  C  G  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51067" stop="51297"/>
                    <exon start="51385" stop="51437"/>
                    <exon start="52161" stop="52205"/>
                    <exon start="52349" stop="52430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIDLHFLHLSSSSNFEALMESSSSSPASRELDEVQTDLPSSVRSASRIRAPNNMVMGKHRLAAAISALNQQINIIQEELDQLDSFGEASLVCRELVSSVELIPDALLPVTRGPINVHLDRWFHGVNDSRRNKRWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="65017" PGL_stop="61572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65017" e_stop="64872"/>
            <exon e_start="64277" e_stop="64218"/>
            <exon e_start="63747" e_stop="63592"/>
            <exon e_start="63474" e_stop="63381"/>
            <exon e_start="62059" e_stop="61777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65017" e_stop="64872" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.959">
            <gDNA_intron_boundary i_start="64871" i_stop="64278" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64277" e_stop="64218" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63747" e_stop="63592" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.927">
            <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63474" e_stop="63381" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="62059" e_stop="61777" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65017" stop="64872"/>
              <exon start="64277" stop="64218"/>
              <exon start="63747" stop="63592"/>
              <exon start="63474" stop="63381"/>
              <exon start="62059" stop="61782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65017" stop="64872"/>
              <exon start="64277" stop="64218"/>
              <exon start="63747" stop="63592"/>
              <exon start="63474" stop="63381"/>
              <exon start="62059" stop="61783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64277" stop="64218"/>
              <exon start="63747" stop="63592"/>
              <exon start="63474" stop="63381"/>
              <exon start="62059" stop="61777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCCTTTTACACCAATGGGATTATTTAGTTCAATAACACCAATATTAACACTTGGTTCTTTGTCAAAAAGATGGTTAATTCCTGGTTGGAGACTTGGTTGGTTTGTCATTAATGATCCTAATTGCATTTTCAAATCCCCTAAG : ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG : GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATG : GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG : GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATATGATTTGCA</gDNA_template>
            <first_frame> K  P  L  L  H  Q  W  D  Y  L  V  Q  *  H  Q  Y  *  H  L  V  L  C  Q  K  D  G  *  F  L  V  G  D  L  V  G  L  S  L  M  I  L  I  A  F  S  N  P  L  R :   *  L  N  V  L  I  T  I  V  T  Y  V  Q  V  P  Q  L  S  Y  R :   Q  Q  S  P  K  L  L  K  I  P  K  R  I  S  S  K  I  H  S  K  C  *  R  K  I  Q  I  Y  V  M  K  R  Y  L  K  F  H  A  *  I  A  L  T  N  L  K  V  Q  W  L  L  W :   *  I  L  I  *  F  S  S  K  I  *  L  M  I  W  T  S  V  L  S  L  L  R  R  N  M  S  F  Y  F  L  :  E  L  L  L  D  *  K  I  G  S  E  S  H  L  Q  L  S  H  L  F  L  K  K  D  *  K  D  S  N  L  F  A  L  G  I  P  S  P  K  I  *  L  I  N  *  L  I  N  *  C  *  F  S  G  F  F  I  F  I  I  L  A  N  L  V  N  K  F  K  H  N  V  N  S  N  T  L  L  L  F  K  *  L  I  K  F  P  Y  L  V  N  M  I  C  </first_frame>
            <second_frame>  N  P  F  Y  T  N  G  I  I  *  F  N  N  T  N  I  N  T  W  F  F  V  K  K  M  V  N  S  W  L  E  T  W  L  V  C  H  *  *  S  *  L  H  F  Q  I  P  *   : D  N  *  T  Y  *  *  L  L  *  L  M  C  K  S  H  N  F  H  T   : G  S  S  P  Q  N  Y  *  K  Y  Q  R  G  F  L  Q  K  Y  T  Q  N  V  K  E  K  F  R  Y  M  L  *  K  D  T  *  N  S  M  P  K  L  P  L  Q  T  S  R  F  N  G  C  Y   : G  E  S  *  Y  N  S  P  P  K  Y  N  *  *  Y  G  L  L  F  *  A  C  *  G  G  I  C  H  F  T  S  W :   N  C  C  W  I  K  K  L  D  Q  N  H  I  C  S  *  V  I  F  S  *  R  R  I  K  K  T  Q  I  F  L  P  *  A  F  Q  A  P  K  F  N  *  L  I  N  *  L  I  N  A  N  F  L  D  F  S  F  S  *  F  L  P  I  W  *  I  N  S  S  I  M  L  I  P  I  L  C  C  Y  L  N  N  *  *  N  F  L  I  *  S  I  *  F  A </second_frame>
            <third_frame>   T  P  F  T  P  M  G  L  F  S  S  I  T  P  I  L  T  L  G  S  L  S  K  R  W  L  I  P  G  W  R  L  G  W  F  V  I  N  D  P  N  C  I  F  K  S  P  K  :  I  I  E  R  I  N  N  Y  C  D  L  C  A  S  P  T  T  F  I  Q  :  A  A  V  P  K  I  I  E  N  T  K  E  D  F  F  K  N  T  L  K  M  L  K  K  N  S  D  I  C  Y  E  K  I  L  E  I  P  C  L  N  C  P  Y  K  P  Q  G  S  M  V  V  M  :  V  N  L  N  I  I  L  L  Q  N  I  I  D  D  M  D  F  C  F  K  L  A  K  E  E  Y  V  I  L  L  P   : G  T  A  V  G  L  K  N  W  I  R  I  T  F  A  V  E  S  S  F  L  E  E  G  L  K  R  L  K  S  F  C  L  R  H  S  K  P  Q  N  L  I  N  *  L  T  N  *  L  M  L  I  F  W  I  F  H  F  H  N  S  C  Q  F  G  E  *  I  Q  A  *  C  *  F  Q  Y  F  V  V  I  *  I  I  N  K  I  S  L  F  S  Q  Y  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65015" stop="64872"/>
                    <exon start="64277" stop="64218"/>
                    <exon start="63747" stop="63592"/>
                    <exon start="63474" stop="63381"/>
                    <exon start="62059" stop="61929"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPFTPMGLFSSITPILTLGSLSKRWLIPGWRLGWFVINDPNCIFKSPKIIERINNYCDLCASPTTFIQAAVPKIIENTKEDFFKNTLKMLKKNSDICYEKILEIPCLNCPYKPQGSMVVMVNLNIILLQNIIDDMDFCFKLAKEEYVILLPGTAVGLKNWIRITFAVESSFLEEGLKRLKSFCLRHSKPQNLIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62645" e_stop="61893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="62645" e_stop="61893" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62645" stop="61893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTATATAAATCCTACCGTAGACTAGAAAATAGATTTTTTTTTAAAAAAAAATATATAGAAATTGTAAATGATACCTTTAGATGTGAGTTCACATTAAATTCTTTGTTTTGTTCAAAGCTTATGTTAAATCTAACCAGTATAGTTTGATAAATATTTGACAAAATATAATCCTAATTGTTTATATACATATGTTTAATTAAACATGAAATTTATGAAAAAAGATCGACTTTTAACGTATAGTAAGACTATCAATCTTATAATCACTACGACAGAAAGCATGTCACTAAAATAAACGTAGAAACTTGAAGTTAATAAATATTTACATATATAGAGTGATAGGGAAAAATATTATTTTTCCTTTAAAAAAAGAAATAAATTCGAAACAATATCGCATAAAATGAATCAAAATAATAAGAATGGACTTGTACTAAAATGTGGTGTAAACTACTTATATTTGTAAACTATTTACAATATTTGTGCATGATAAATTAAATTTTCCTTTTGTTATGCAATCAATTTAAACTAATTGGCCTAATTTTATTATTGTTTATTAATACAATTTTATTTTATTTTTTAAATTTTAGGAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTT</gDNA_template>
            <first_frame> F  Y  I  N  P  T  V  D  *  K  I  D  F  F  L  K  K  N  I  *  K  L  *  M  I  P  L  D  V  S  S  H  *  I  L  C  F  V  Q  S  L  C  *  I  *  P  V  *  F  D  K  Y  L  T  K  Y  N  P  N  C  L  Y  T  Y  V  *  L  N  M  K  F  M  K  K  D  R  L  L  T  Y  S  K  T  I  N  L  I  I  T  T  T  E  S  M  S  L  K  *  T  *  K  L  E  V  N  K  Y  L  H  I  *  S  D  R  E  K  Y  Y  F  S  F  K  K  R  N  K  F  E  T  I  S  H  K  M  N  Q  N  N  K  N  G  L  V  L  K  C  G  V  N  Y  L  Y  L  *  T  I  Y  N  I  C  A  *  *  I  K  F  S  F  C  Y  A  I  N  L  N  *  L  A  *  F  Y  Y  C  L  L  I  Q  F  Y  F  I  F  *  I  L  G  T  A  V  G  L  K  N  W  I  R  I  T  F  A  V  E  S  S  F  L  E  E  G  L  K  R  L  K  S  F  C  L  R  H  S  K  P  Q  N  L  I  N  *  L  T  N  *  L  M  L  I  F  W  I  F </first_frame>
            <second_frame>  S  I  *  I  L  P  *  T  R  K  *  I  F  F  *  K  K  I  Y  R  N  C  K  *  Y  L  *  M  *  V  H  I  K  F  F  V  L  F  K  A  Y  V  K  S  N  Q  Y  S  L  I  N  I  *  Q  N  I  I  L  I  V  Y  I  H  M  F  N  *  T  *  N  L  *  K  K  I  D  F  *  R  I  V  R  L  S  I  L  *  S  L  R  Q  K  A  C  H  *  N  K  R  R  N  L  K  L  I  N  I  Y  I  Y  R  V  I  G  K  N  I  I  F  P  L  K  K  E  I  N  S  K  Q  Y  R  I  K  *  I  K  I  I  R  M  D  L  Y  *  N  V  V  *  T  T  Y  I  C  K  L  F  T  I  F  V  H  D  K  L  N  F  P  F  V  M  Q  S  I  *  T  N  W  P  N  F  I  I  V  Y  *  Y  N  F  I  L  F  F  K  F  *  E  L  L  L  D  *  K  I  G  S  E  S  H  L  Q  L  S  H  L  F  L  K  K  D  *  K  D  S  N  L  F  A  L  G  I  P  S  P  K  I  *  L  I  N  *  L  I  N  *  C  *  F  S  G  F   </second_frame>
            <third_frame>   L  Y  K  S  Y  R  R  L  E  N  R  F  F  F  K  K  K  Y  I  E  I  V  N  D  T  F  R  C  E  F  T  L  N  S  L  F  C  S  K  L  M  L  N  L  T  S  I  V  *  *  I  F  D  K  I  *  S  *  L  F  I  Y  I  C  L  I  K  H  E  I  Y  E  K  R  S  T  F  N  V  *  *  D  Y  Q  S  Y  N  H  Y  D  R  K  H  V  T  K  I  N  V  E  T  *  S  *  *  I  F  T  Y  I  E  *  *  G  K  I  L  F  F  L  *  K  K  K  *  I  R  N  N  I  A  *  N  E  S  K  *  *  E  W  T  C  T  K  M  W  C  K  L  L  I  F  V  N  Y  L  Q  Y  L  C  M  I  N  *  I  F  L  L  L  C  N  Q  F  K  L  I  G  L  I  L  L  L  F  I  N  T  I  L  F  Y  F  L  N  F  R  N  C  C  W  I  K  K  L  D  Q  N  H  I  C  S  *  V  I  F  S  *  R  R  I  K  K  T  Q  I  F  L  P  *  A  F  Q  A  P  K  F  N  *  L  I  N  *  L  I  N  A  N  F  L  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0067C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64277" e_stop="64218"/>
            <exon e_start="63747" e_stop="63592"/>
            <exon e_start="63474" e_stop="63381"/>
            <exon e_start="62059" e_stop="61786"/>
            <exon e_start="61584" e_stop="61572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="0.867"/>
          <exon-intron don_prob="0.914" acc_prob="0.927" e_score="0.981"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.639" e_score="0.898"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="64277" e_stop="64218" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64217" i_stop="63748" i_length="470"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="63747" e_stop="63592" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.927">
            <gDNA_intron_boundary i_start="63591" i_stop="63475" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63474" e_stop="63381" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63380" i_stop="62060" i_length="1321"/>
          </intron>
          <exon e_serial="4" e_score="0.898">
            <gDNA_exon_boundary e_start="62059" e_stop="61786" e_length="274"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.639">
            <gDNA_intron_boundary i_start="61785" i_stop="61585" i_length="201"/>
          </intron>
          <exon e_serial="5" e_score="0.692">
            <gDNA_exon_boundary e_start="61584" e_stop="61572" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64277" stop="64218"/>
              <exon start="63747" stop="63592"/>
              <exon start="63474" stop="63381"/>
              <exon start="62059" stop="61786"/>
              <exon start="61584" stop="61572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64277" stop="64218"/>
              <exon start="63747" stop="63592"/>
              <exon start="63474" stop="63381"/>
              <exon start="62059" stop="61789"/>
              <exon start="61584" stop="61572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64277" stop="64218"/>
              <exon start="63747" stop="63592"/>
              <exon start="63474" stop="63381"/>
              <exon start="62059" stop="61789"/>
              <exon start="61584" stop="61572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTGAACGTATTAATAACTATTGTGACTTATGTGCAAGTCCCACAACTTTCATACAG : GCAGCAGTCCCCAAAATTATTGAAAATACCAAAGAGGATTTCTTCAAAAATACACTCAAAATGTTAAAGAAAAATTCAGATATATGTTATGAAAAGATACTTGAAATTCCATGCCTAAATTGCCCTTACAAACCTCAAGGTTCAATGGTTGTTATG : GTGAATCTTAATATAATTCTCCTCCAAAATATAATTGATGATATGGACTTCTGTTTTAAGCTTGCTAAGGAGGAATATGTCATTTTACTTCCTG : GAACTGCTGTTGGATTAAAAAATTGGATCAGAATCACATTTGCAGTTGAGTCATCTTTTCTTGAAGAAGGATTAAAAAGACTCAAATCTTTTTGCCTTAGGCATTCCAAGCCCCAAAATTTAATTAATTAATTAACTAATTAATTAATGCTAATTTTCTGGATTTTTCATTTTCATAATTCTTGCCAATTTGGTGAATAAATTCAAGCATAATGTTAATTCCAATACTTTGTTGTTATTTAAATAATTAATAAAATTTCCTTATTTAGTCAATA : ATACAGGAAAAAA</gDNA_template>
            <first_frame> I  I  E  R  I  N  N  Y  C  D  L  C  A  S  P  T  T  F  I  Q  :  A  A  V  P  K  I  I  E  N  T  K  E  D  F  F  K  N  T  L  K  M  L  K  K  N  S  D  I  C  Y  E  K  I  L  E  I  P  C  L  N  C  P  Y  K  P  Q  G  S  M  V  V  M  :  V  N  L  N  I  I  L  L  Q  N  I  I  D  D  M  D  F  C  F  K  L  A  K  E  E  Y  V  I  L  L  P   : G  T  A  V  G  L  K  N  W  I  R  I  T  F  A  V  E  S  S  F  L  E  E  G  L  K  R  L  K  S  F  C  L  R  H  S  K  P  Q  N  L  I  N  *  L  T  N  *  L  M  L  I  F  W  I  F  H  F  H  N  S  C  Q  F  G  E  *  I  Q  A  *  C  *  F  Q  Y  F  V  V  I  *  I  I  N  K  I  S  L  F  S  Q  * :   Y  R  K  K </first_frame>
            <second_frame>  *  L  N  V  L  I  T  I  V  T  Y  V  Q  V  P  Q  L  S  Y  R :   Q  Q  S  P  K  L  L  K  I  P  K  R  I  S  S  K  I  H  S  K  C  *  R  K  I  Q  I  Y  V  M  K  R  Y  L  K  F  H  A  *  I  A  L  T  N  L  K  V  Q  W  L  L  W :   *  I  L  I  *  F  S  S  K  I  *  L  M  I  W  T  S  V  L  S  L  L  R  R  N  M  S  F  Y  F  L  :  E  L  L  L  D  *  K  I  G  S  E  S  H  L  Q  L  S  H  L  F  L  K  K  D  *  K  D  S  N  L  F  A  L  G  I  P  S  P  K  I  *  L  I  N  *  L  I  N  *  C  *  F  S  G  F  F  I  F  I  I  L  A  N  L  V  N  K  F  K  H  N  V  N  S  N  T  L  L  L  F  K  *  L  I  K  F  P  Y  L  V  N   : N  T  G  K   </second_frame>
            <third_frame>   N  *  T  Y  *  *  L  L  *  L  M  C  K  S  H  N  F  H  T   : G  S  S  P  Q  N  Y  *  K  Y  Q  R  G  F  L  Q  K  Y  T  Q  N  V  K  E  K  F  R  Y  M  L  *  K  D  T  *  N  S  M  P  K  L  P  L  Q  T  S  R  F  N  G  C  Y   : G  E  S  *  Y  N  S  P  P  K  Y  N  *  *  Y  G  L  L  F  *  A  C  *  G  G  I  C  H  F  T  S  W :   N  C  C  W  I  K  K  L  D  Q  N  H  I  C  S  *  V  I  F  S  *  R  R  I  K  K  T  Q  I  F  L  P  *  A  F  Q  A  P  K  F  N  *  L  I  N  *  L  I  N  A  N  F  L  D  F  S  F  S  *  F  L  P  I  W  *  I  N  S  S  I  M  L  I  P  I  L  C  C  Y  L  N  N  *  *  N  F  L  I  *  S  I  :  I  Q  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64277" stop="64218"/>
                    <exon start="63747" stop="63592"/>
                    <exon start="63474" stop="63381"/>
                    <exon start="62059" stop="61929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIERINNYCDLCASPTTFIQAAVPKIIENTKEDFFKNTLKMLKKNSDICYEKILEIPCLNCPYKPQGSMVVMVNLNIILLQNIIDDMDFCFKLAKEEYVILLPGTAVGLKNWIRITFAVESSFLEEGLKRLKSFCLRHSKPQNLIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73697" PGL_stop="72631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73697" e_stop="73647"/>
            <exon e_start="72899" e_stop="72631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.875" e_score="0.980"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="73697" e_stop="73647" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.875">
            <gDNA_intron_boundary i_start="73646" i_stop="72900" i_length="747"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="72899" e_stop="72631" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73697" stop="73647"/>
              <exon start="72899" stop="72631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTCTCTTCGTTGCAACAGAGAGCGGCGGCCGGCGGTGAAGTTTTGCTG : GTATTGATTATAGTAAAACACATGGGATTGCCGAGATTTAAACGTCCTGTAGGGACTAGCGAACCAAGTTCAAATCTTTATGTGGCCAATTGTGGACCTGCAGTTGGACTAACTTTGGACACAATTGAAGCCGTATTTGGTGCATATGGTCAAGTTAAGGGAGTCCATCTCGCTGATGAAAGTGGCACTAGAGTTATTGTGTCTTATCATGAAGAAAAGTCTGCAGAATCTGCCCTGACGGCGTTGAATAGACGAGCATGTCCTGAGCT</gDNA_template>
            <first_frame> I  F  S  S  L  Q  Q  R  A  A  A  G  G  E  V  L  L  :  V  L  I  I  V  K  H  M  G  L  P  R  F  K  R  P  V  G  T  S  E  P  S  S  N  L  Y  V  A  N  C  G  P  A  V  G  L  T  L  D  T  I  E  A  V  F  G  A  Y  G  Q  V  K  G  V  H  L  A  D  E  S  G  T  R  V  I  V  S  Y  H  E  E  K  S  A  E  S  A  L  T  A  L  N  R  R  A  C  P  E   </first_frame>
            <second_frame>  F  S  L  R  C  N  R  E  R  R  P  A  V  K  F  C  W :   Y  *  L  *  *  N  T  W  D  C  R  D  L  N  V  L  *  G  L  A  N  Q  V  Q  I  F  M  W  P  I  V  D  L  Q  L  D  *  L  W  T  Q  L  K  P  Y  L  V  H  M  V  K  L  R  E  S  I  S  L  M  K  V  A  L  E  L  L  C  L  I  M  K  K  S  L  Q  N  L  P  *  R  R  *  I  D  E  H  V  L  S  </second_frame>
            <third_frame>   F  L  F  V  A  T  E  S  G  G  R  R  *  S  F  A   : G  I  D  Y  S  K  T  H  G  I  A  E  I  *  T  S  C  R  D  *  R  T  K  F  K  S  L  C  G  Q  L  W  T  C  S  W  T  N  F  G  H  N  *  S  R  I  W  C  I  W  S  S  *  G  S  P  S  R  *  *  K  W  H  *  S  Y  C  V  L  S  *  R  K  V  C  R  I  C  P  D  G  V  E  *  T  S  M  S  *  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73697" stop="73647"/>
                    <exon start="72899" stop="72633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSLQQRAAAGGEVLLVLIIVKHMGLPRFKRPVGTSEPSSNLYVANCGPAVGLTLDTIEAVFGAYGQVKGVHLADESGTRVIVSYHEEKSAESALTALNRRACPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="80393" PGL_stop="76291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80393" e_stop="80312"/>
            <exon e_start="79196" e_stop="79027"/>
            <exon e_start="78943" e_stop="78846"/>
            <exon e_start="78763" e_stop="78706"/>
            <exon e_start="78267" e_stop="78188"/>
            <exon e_start="78096" e_stop="77994"/>
            <exon e_start="77914" e_stop="77454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80393" e_stop="80312" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79196" e_stop="79027" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.988">
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          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATTTGCCGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG : AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG : GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG : TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG : ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG : TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG : GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTTCTTTTGAATGTCTGAATGTGCCAAATTTTTGGTGCATTACTCCTGTTTA</gDNA_template>
            <first_frame> I  Y  L  P  H  L  G  H  S  Y  I  L  S  C  P  P  A  D  Q  S  H  S  L  Q  Q  F  Q   : E  M  G  E  T  P  V  P  E  S  V  L  K  K  Q  K  R  S  E  E  W  A  L  A  K  K  Q  E  L  E  S  A  K  K  K  N  A  E  N  R  K  L  I  Y  N  R  A  K  L  Y  A  K  E  Y  A  E  Q  :  D  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  :  I  F  N  G  V  F  L  K  V  N  K  A  T  V  N  M  L  H  R  V  E  P  Y  V  T  Y  G :   Y  P  N  L  K  S  V  R  E  L  I  Y  K  R  G  Y  G  K  L  D  K  Q  R  I  P  L  T  D  N  S  V  I  E  Q  :  G  L  G  K  H  G  I  I  C  A  E  D  L  V  H  E  I  M  T  V  G  P  S  F  K  Q  A  N  N  F  L  W  P  F  Q  L  K  A  P  L  G  G  L  K  K  K  R  N  H  Y  V  E  G  G  D  A  G  N  R  E  N  F  I  N  E  L  I  R  R  M  N  *  S  A  *  N  F  V  F  *  A  F  L  V  I  N  S  S  E  F  L  P  F  E  M  L  F  C  F  M  I  V  Y  D  I  I  F  V  L  I  A  P  V  S  I  V  L  C  W  I  F  E  F  M  F  I  S  V  S  K  I  S  K  F  F  F  S  S  F  E  C  L  N  V  P  N  F  W  C  I  T  P  V   </first_frame>
            <second_frame>  Y  I  C  R  I  *  V  T  V  T  F  S  L  A  L  P  P  I  R  A  I  L  F  N  N  F  K  :  R  W  V  K  H  Q  F  Q  S  Q  F  *  R  S  R  R  G  A  R  N  G  L  L  Q  R  S  K  N  L  N  L  Q  R  R  R  M  L  R  T  G  N  *  S  T  T  G  Q  S  C  M  Q  R  S  M  Q  N  R :   T  R  N  *  S  V  *  N  V  R  L  D  *  K  V  V  S  M  W  I  L  R  Q  S  C  C  L  S  S  E  Y  A   : V  L  T  L  C  P  H  R  P  K  R  F  C  S  Y  Y  V  C  A  R :   S  L  M  V  S  F  *  K  S  T  R  P  Q  *  T  C  C  I  G  L  N  L  T  L  P  M   : V  T  Q  T  *  R  V  L  G  N  *  S  T  K  E  V  T  E  N  L  T  S  R  E  F  L  *  P  T  T  L  S  L  S  R :   D  W  A  N  M  E  L  S  V  L  K  T  L  S  T  R  S  *  L  S  G  P  A  S  S  R  P  T  T  S  Y  G  H  S  S  *  R  H  L  W  V  D  S  R  R  R  E  I  T  T  L  K  V  E  M  L  V  T  A  R  T  S  L  T  N  L  S  G  G  *  T  R  V  P  E  I  L  F  S  R  H  F  *  *  S  T  V  Q  N  F  F  H  L  R  C  Y  F  A  L  *  *  Y  T  T  L  F  L  F  *  *  P  Q  S  L  S  Y  C  V  G  F  L  N  L  C  S  F  R  F  Q  R  Y  L  S  S  F  F  L  L  L  N  V  *  M  C  Q  I  F  G  A  L  L  L  F  </second_frame>
            <third_frame>   I  F  A  A  F  R  S  Q  L  H  S  L  L  P  S  R  R  S  E  P  F  S  S  T  I  S  R :   D  G  *  N  T  S  S  R  V  S  F  E  E  A  E  E  E  R  G  M  G  S  C  K  E  A  R  T  *  I  C  K  E  E  E  C  *  E  Q  E  I  D  L  Q  Q  G  K  A  V  C  K  G  V  C  R  T   : G  Q  G  I  D  P  F  E  T  *  G  *  I  E  R  W  F  L  C  G  S  *  G  K  V  V  V  Y  H  Q  N  T  R  :  Y  *  R  Y  A  P  T  D  Q  K  D  F  A  A  T  T  F  A  P   : D  L  *  W  C  L  F  E  S  Q  Q  G  H  S  E  H  V  A  *  G  *  T  L  R  Y  L  W  :  L  P  K  P  K  E  C  *  G  I  D  L  Q  K  R  L  R  K  T  *  Q  A  E  N  S  F  N  R  Q  L  C  H  *  A   : G  I  G  Q  T  W  N  Y  L  C  *  R  P  C  P  R  D  H  D  C  R  A  Q  L  Q  A  G  Q  Q  L  P  M  A  I  P  A  E  G  T  F  G  W  T  Q  E  E  E  K  S  L  R  *  R  W  R  C  W  *  P  R  E  L  H  *  R  T  Y  Q  E  D  E  L  E  C  L  K  F  C  F  L  G  I  F  S  D  Q  Q  F  R  I  S  S  I  *  D  V  I  L  L  Y  D  S  I  R  H  Y  F  C  F  D  S  P  S  L  Y  R  I  V  L  D  F  *  I  Y  V  H  F  G  F  K  D  I  *  V  L  F  F  F  F  *  M  S  E  C  A  K  F  L  V  H  Y  S  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80393" stop="80312"/>
                    <exon start="79196" stop="79027"/>
                    <exon start="78943" stop="78846"/>
                    <exon start="78763" stop="78706"/>
                    <exon start="78267" stop="78188"/>
                    <exon start="78096" stop="77994"/>
                    <exon start="77914" stop="77699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLPHLGHSYILSCPPADQSHSLQQFQEMGETPVPESVLKKQKRSEEWALAKKQELESAKKKNAENRKLIYNRAKLYAKEYAEQDKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIPLTDNSVIEQGLGKHGIICAEDLVHEIMTVGPSFKQANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77674" stop="77456"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLVINSSEFLPFEMLFCFMIVYDIIFVLIAPVSIVLCWIFEFMFISVSKISKFFFSSFECLNVPNFWCITPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80393" e_stop="80312"/>
            <exon e_start="79196" e_stop="79027"/>
            <exon e_start="78943" e_stop="78846"/>
            <exon e_start="78763" e_stop="78706"/>
            <exon e_start="78267" e_stop="78188"/>
            <exon e_start="78096" e_stop="77994"/>
            <exon e_start="77914" e_stop="77503"/>
            <exon e_start="76334" e_stop="76291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80393" e_stop="80312" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="80311" i_stop="79197" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79196" e_stop="79027" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78943" e_stop="78846" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78763" e_stop="78706" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78267" e_stop="78188" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.984">
            <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78096" e_stop="77994" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77914" e_stop="77503" e_length="412"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77502" i_stop="76335" i_length="1168"/>
          </intron>
          <exon e_serial="8" e_score="0.000">
            <gDNA_exon_boundary e_start="76334" e_stop="76291" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80393" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80383" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80383" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80374" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80373" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="78056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80372" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80372" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80367" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80367" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="78057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80366" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80365" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="78061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80361" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80358" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80347" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80346" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80346" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="78026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80345" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80345" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="78056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80345" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80344" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80344" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80343" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="78064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80336" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80336" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80333" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80331" stop="80312"/>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79142" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79078" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79065" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79045" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79045" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78758" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78252" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318460" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78203" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349949" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78203" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78093" stop="77994"/>
              <exon start="77914" stop="77503"/>
              <exon start="76334" stop="76291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303007" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78021" stop="77994"/>
              <exon start="77914" stop="77534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77751" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATTTGCCGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAG : AGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG : GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG : TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG : ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG : TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG : GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTT : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> I  Y  L  P  H  L  G  H  S  Y  I  L  S  C  P  P  A  D  Q  S  H  S  L  Q  Q  F  Q   : E  M  G  E  T  P  V  P  E  S  V  L  K  K  Q  K  R  S  E  E  W  A  L  A  K  K  Q  E  L  E  S  A  K  K  K  N  A  E  N  R  K  L  I  Y  N  R  A  K  L  Y  A  K  E  Y  A  E  Q  :  D  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  :  I  F  N  G  V  F  L  K  V  N  K  A  T  V  N  M  L  H  R  V  E  P  Y  V  T  Y  G :   Y  P  N  L  K  S  V  R  E  L  I  Y  K  R  G  Y  G  K  L  D  K  Q  R  I  P  L  T  D  N  S  V  I  E  Q  :  G  L  G  K  H  G  I  I  C  A  E  D  L  V  H  E  I  M  T  V  G  P  S  F  K  Q  A  N  N  F  L  W  P  F  Q  L  K  A  P  L  G  G  L  K  K  K  R  N  H  Y  V  E  G  G  D  A  G  N  R  E  N  F  I  N  E  L  I  R  R  M  N  *  S  A  *  N  F  V  F  *  A  F  L  V  I  N  S  S  E  F  L  P  F  E  M  L  F  C  F  M  I  V  Y  D  I  I  F  V  L  I  A  P  V  S  I  V  L  C  W  I  F  E  F  M  F  I  S  V  S  K  I  S  K  F  F  F  S   : F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  Y  I  C  R  I  *  V  T  V  T  F  S  L  A  L  P  P  I  R  A  I  L  F  N  N  F  K  :  R  W  V  K  H  Q  F  Q  S  Q  F  *  R  S  R  R  G  A  R  N  G  L  L  Q  R  S  K  N  L  N  L  Q  R  R  R  M  L  R  T  G  N  *  S  T  T  G  Q  S  C  M  Q  R  S  M  Q  N  R :   T  R  N  *  S  V  *  N  V  R  L  D  *  K  V  V  S  M  W  I  L  R  Q  S  C  C  L  S  S  E  Y  A   : V  L  T  L  C  P  H  R  P  K  R  F  C  S  Y  Y  V  C  A  R :   S  L  M  V  S  F  *  K  S  T  R  P  Q  *  T  C  C  I  G  L  N  L  T  L  P  M   : V  T  Q  T  *  R  V  L  G  N  *  S  T  K  E  V  T  E  N  L  T  S  R  E  F  L  *  P  T  T  L  S  L  S  R :   D  W  A  N  M  E  L  S  V  L  K  T  L  S  T  R  S  *  L  S  G  P  A  S  S  R  P  T  T  S  Y  G  H  S  S  *  R  H  L  W  V  D  S  R  R  R  E  I  T  T  L  K  V  E  M  L  V  T  A  R  T  S  L  T  N  L  S  G  G  *  T  R  V  P  E  I  L  F  S  R  H  F  *  *  S  T  V  Q  N  F  F  H  L  R  C  Y  F  A  L  *  *  Y  T  T  L  F  L  F  *  *  P  Q  S  L  S  Y  C  V  G  F  L  N  L  C  S  F  R  F  Q  R  Y  L  S  S  F  F  L  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  F  A  A  F  R  S  Q  L  H  S  L  L  P  S  R  R  S  E  P  F  S  S  T  I  S  R :   D  G  *  N  T  S  S  R  V  S  F  E  E  A  E  E  E  R  G  M  G  S  C  K  E  A  R  T  *  I  C  K  E  E  E  C  *  E  Q  E  I  D  L  Q  Q  G  K  A  V  C  K  G  V  C  R  T   : G  Q  G  I  D  P  F  E  T  *  G  *  I  E  R  W  F  L  C  G  S  *  G  K  V  V  V  Y  H  Q  N  T  R  :  Y  *  R  Y  A  P  T  D  Q  K  D  F  A  A  T  T  F  A  P   : D  L  *  W  C  L  F  E  S  Q  Q  G  H  S  E  H  V  A  *  G  *  T  L  R  Y  L  W  :  L  P  K  P  K  E  C  *  G  I  D  L  Q  K  R  L  R  K  T  *  Q  A  E  N  S  F  N  R  Q  L  C  H  *  A   : G  I  G  Q  T  W  N  Y  L  C  *  R  P  C  P  R  D  H  D  C  R  A  Q  L  Q  A  G  Q  Q  L  P  M  A  I  P  A  E  G  T  F  G  W  T  Q  E  E  E  K  S  L  R  *  R  W  R  C  W  *  P  R  E  L  H  *  R  T  Y  Q  E  D  E  L  E  C  L  K  F  C  F  L  G  I  F  S  D  Q  Q  F  R  I  S  S  I  *  D  V  I  L  L  Y  D  S  I  R  H  Y  F  C  F  D  S  P  S  L  Y  R  I  V  L  D  F  *  I  Y  V  H  F  G  F  K  D  I  *  V  L  F  F  F :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80393" stop="80312"/>
                    <exon start="79196" stop="79027"/>
                    <exon start="78943" stop="78846"/>
                    <exon start="78763" stop="78706"/>
                    <exon start="78267" stop="78188"/>
                    <exon start="78096" stop="77994"/>
                    <exon start="77914" stop="77699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLPHLGHSYILSCPPADQSHSLQQFQEMGETPVPESVLKKQKRSEEWALAKKQELESAKKKNAENRKLIYNRAKLYAKEYAEQDKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIPLTDNSVIEQGLGKHGIICAEDLVHEIMTVGPSFKQANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77674" stop="77503"/>
                    <exon start="76334" stop="76291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLVINSSEFLPFEMLFCFMIVYDIIFVLIAPVSIVLCWIFEFMFISVSKISKFFFSFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79209" e_stop="79027"/>
            <exon e_start="78943" e_stop="78846"/>
            <exon e_start="78763" e_stop="78706"/>
            <exon e_start="78267" e_stop="78188"/>
            <exon e_start="78096" e_stop="77994"/>
            <exon e_start="77914" e_stop="77454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79209" e_stop="79027" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="79026" i_stop="78944" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78943" e_stop="78846" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="78845" i_stop="78764" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78763" e_stop="78706" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="78705" i_stop="78268" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78267" e_stop="78188" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.984">
            <gDNA_intron_boundary i_start="78187" i_stop="78097" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78096" e_stop="77994" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77993" i_stop="77915" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="77914" e_stop="77454" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79209" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79196" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79142" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79078" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79065" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79045" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79045" stop="79027"/>
              <exon start="78943" stop="78846"/>
              <exon start="78763" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78758" stop="78706"/>
              <exon start="78267" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78252" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318460" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78251" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78203" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349949" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78203" stop="78188"/>
              <exon start="78096" stop="77994"/>
              <exon start="77914" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78090" stop="77994"/>
              <exon start="77914" stop="77479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78021" stop="77994"/>
              <exon start="77914" stop="77534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77751" stop="77503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTCGTACAGAGATGGGTGAAACACCAGTTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATGCTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAG : GACAAGGAATTGATCCGTTTGAAACGTGAGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGG : TATTAACGCTATGCCCCCACAGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAG : ATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGCATAGGGTTGAACCTTACGTTACCTATGG : TTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACAAGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAG : GGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGATCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGAGAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATTTTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTTTTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTTCTTCTTTTGAATGTCTGAATGTGCCAAATTTTTGGTGCATTACTCCTGTTTA</gDNA_template>
            <first_frame> *  S  R  T  E  M  G  E  T  P  V  P  E  S  V  L  K  K  Q  K  R  S  E  E  W  A  L  A  K  K  Q  E  L  E  S  A  K  K  K  N  A  E  N  R  K  L  I  Y  N  R  A  K  L  Y  A  K  E  Y  A  E  Q  :  D  K  E  L  I  R  L  K  R  E  A  R  L  K  G  G  F  Y  V  D  P  E  A  K  L  L  F  I  I  R  I  R  G :   I  N  A  M  P  P  Q  T  K  K  I  L  Q  L  L  R  L  R  Q  :  I  F  N  G  V  F  L  K  V  N  K  A  T  V  N  M  L  H  R  V  E  P  Y  V  T  Y  G :   Y  P  N  L  K  S  V  R  E  L  I  Y  K  R  G  Y  G  K  L  D  K  Q  R  I  P  L  T  D  N  S  V  I  E  Q  :  G  L  G  K  H  G  I  I  C  A  E  D  L  V  H  E  I  M  T  V  G  P  S  F  K  Q  A  N  N  F  L  W  P  F  Q  L  K  A  P  L  G  G  L  K  K  K  R  N  H  Y  V  E  G  G  D  A  G  N  R  E  N  F  I  N  E  L  I  R  R  M  N  *  S  A  *  N  F  V  F  *  A  F  L  V  I  N  S  S  E  F  L  P  F  E  M  L  F  C  F  M  I  V  Y  D  I  I  F  V  L  I  A  P  V  S  I  V  L  C  W  I  F  E  F  M  F  I  S  V  S  K  I  S  K  F  F  F  S  S  F  E  C  L  N  V  P  N  F  W  C  I  T  P  V   </first_frame>
            <second_frame>  N  L  V  Q  R  W  V  K  H  Q  F  Q  S  Q  F  *  R  S  R  R  G  A  R  N  G  L  L  Q  R  S  K  N  L  N  L  Q  R  R  R  M  L  R  T  G  N  *  S  T  T  G  Q  S  C  M  Q  R  S  M  Q  N  R :   T  R  N  *  S  V  *  N  V  R  L  D  *  K  V  V  S  M  W  I  L  R  Q  S  C  C  L  S  S  E  Y  A   : V  L  T  L  C  P  H  R  P  K  R  F  C  S  Y  Y  V  C  A  R :   S  L  M  V  S  F  *  K  S  T  R  P  Q  *  T  C  C  I  G  L  N  L  T  L  P  M   : V  T  Q  T  *  R  V  L  G  N  *  S  T  K  E  V  T  E  N  L  T  S  R  E  F  L  *  P  T  T  L  S  L  S  R :   D  W  A  N  M  E  L  S  V  L  K  T  L  S  T  R  S  *  L  S  G  P  A  S  S  R  P  T  T  S  Y  G  H  S  S  *  R  H  L  W  V  D  S  R  R  R  E  I  T  T  L  K  V  E  M  L  V  T  A  R  T  S  L  T  N  L  S  G  G  *  T  R  V  P  E  I  L  F  S  R  H  F  *  *  S  T  V  Q  N  F  F  H  L  R  C  Y  F  A  L  *  *  Y  T  T  L  F  L  F  *  *  P  Q  S  L  S  Y  C  V  G  F  L  N  L  C  S  F  R  F  Q  R  Y  L  S  S  F  F  L  L  L  N  V  *  M  C  Q  I  F  G  A  L  L  L  F  </second_frame>
            <third_frame>   I  S  Y  R  D  G  *  N  T  S  S  R  V  S  F  E  E  A  E  E  E  R  G  M  G  S  C  K  E  A  R  T  *  I  C  K  E  E  E  C  *  E  Q  E  I  D  L  Q  Q  G  K  A  V  C  K  G  V  C  R  T   : G  Q  G  I  D  P  F  E  T  *  G  *  I  E  R  W  F  L  C  G  S  *  G  K  V  V  V  Y  H  Q  N  T  R  :  Y  *  R  Y  A  P  T  D  Q  K  D  F  A  A  T  T  F  A  P   : D  L  *  W  C  L  F  E  S  Q  Q  G  H  S  E  H  V  A  *  G  *  T  L  R  Y  L  W  :  L  P  K  P  K  E  C  *  G  I  D  L  Q  K  R  L  R  K  T  *  Q  A  E  N  S  F  N  R  Q  L  C  H  *  A   : G  I  G  Q  T  W  N  Y  L  C  *  R  P  C  P  R  D  H  D  C  R  A  Q  L  Q  A  G  Q  Q  L  P  M  A  I  P  A  E  G  T  F  G  W  T  Q  E  E  E  K  S  L  R  *  R  W  R  C  W  *  P  R  E  L  H  *  R  T  Y  Q  E  D  E  L  E  C  L  K  F  C  F  L  G  I  F  S  D  Q  Q  F  R  I  S  S  I  *  D  V  I  L  L  Y  D  S  I  R  H  Y  F  C  F  D  S  P  S  L  Y  R  I  V  L  D  F  *  I  Y  V  H  F  G  F  K  D  I  *  V  L  F  F  F  F  *  M  S  E  C  A  K  F  L  V  H  Y  S  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79206" stop="79027"/>
                    <exon start="78943" stop="78846"/>
                    <exon start="78763" stop="78706"/>
                    <exon start="78267" stop="78188"/>
                    <exon start="78096" stop="77994"/>
                    <exon start="77914" stop="77699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRTEMGETPVPESVLKKQKRSEEWALAKKQELESAKKKNAENRKLIYNRAKLYAKEYAEQDKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIPLTDNSVIEQGLGKHGIICAEDLVHEIMTVGPSFKQANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77674" stop="77456"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLVINSSEFLPFEMLFCFMIVYDIIFVLIAPVSIVLCWIFEFMFISVSKISKFFFSSFECLNVPNFWCITPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="106801" PGL_stop="103561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106801" e_stop="106670"/>
            <exon e_start="105757" e_stop="105424"/>
            <exon e_start="105350" e_stop="105134"/>
            <exon e_start="105057" e_stop="104520"/>
            <exon e_start="104440" e_stop="104342"/>
            <exon e_start="104120" e_stop="103561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.318" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.970" e_score="0.987"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106801" e_stop="106670" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105757" e_stop="105424" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.933">
            <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105350" e_stop="105134" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.318" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="105057" e_stop="104520" e_length="538"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.970">
            <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104440" e_stop="104342" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="104120" e_stop="103561" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106801" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106771" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106763" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106708" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106707" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106707" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106705" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106701" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105501" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105498" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105315" stop="105134"/>
              <exon start="105057" stop="104746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105189" stop="105134"/>
              <exon start="105057" stop="104520"/>
              <exon start="104440" stop="104432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105189" stop="105134"/>
              <exon start="105057" stop="104660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104622" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104622" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104622" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104622" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104595" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104386" stop="104342"/>
              <exon start="104120" stop="103591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258706" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103954" stop="103561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG : GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG : AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG : GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACGAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG : GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG : GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGTGCTAAGTTTTGTCGATTTTTTTAATAAAAA</gDNA_template>
            <first_frame> K  R  K  K  C  *  T  D  I  F  C  L  L  F  L  V  V  *  *  C  F  N  I  Q  F  S  T  S  K  S  V  *  K  W  Q  Y  P  S  Q  I  C  F  Q  K  :  V  M  R  M  E  Q  S  I  S  R  L  K  Q  S  Q  V  N  *  S  F  R  L  A  I  E  Q  E  Q  R  Q  L  L  I  L  V  R  V  L  L  K  S  L  G  S  G  T  I  *  L  Q  T  F  Q  S  N  H  L  H  R  C  I  P  R  R  F  S  L  S  N  R  R  T  Y  L  R  F  S  V  M  S  *  L  S  R  R  Q  A  S  T  S  L  L  I  Y  R  K  K  F  *  T  S  T  V  F  G  A  Q  P  L  *  L   : E  Q  R  G  W  K  N  C  L  I  H  P  H  E  Y  I  T  S  M  K  V  V  A  P  R  G  R  T  S  P  T  L  L  F  L  R  P  G  T  I  K  W  G  M  L  K  M  W  L  R  R  P  G  Q  V  N  G  G  A  R  C  R  L  L  A  A  Y  L  V  S  I  V  R :   Y  G  K  F  E  L  R  L  I  R  N  L  I  V  R  *  *  C  K  L  G  V  R  R  C  I  L  L  L  P  T  L  Q  R  P  V  G  L  F  Y  K  W  I  L  Q  V  Q  E  V  *  E  *  L  F  Q  R  L  W  R  L  Q  R  R  T  L  T  P  S  I  V  W  E  V  F  *  I  M  F  C  Y  I  R  P  L  S  V  R  S  V  *  N  R  W  R  I  S  E  R  L  Q  M  *  S  S  V  A  R  E  V  D  L  I  L  Q  D  L  L  S  R  L  S  G  R  S  L  R  G  E  L  T  L  L  L  E  R  L  N  L  Q  L  A  P  R  *  R  K  V  C  M  L  T  T  M  E  T  P  Q  A  *  L  L  *  *  K  C  I  H  L  V  M  T  S  Y  R  I  P  S  I  P  :  G  V  S  V  T  T  A  W  H  H  *  Y  H  T  S  M  N  S  D  S  W  K  Q  Y  Q  F  R  R  L  N  V  S  K  :  V  L  F  S  L  R  G  L  R  G  *  Y  Q  H  Q  N  Q  R  M  L  *  P  L  L  *  G  K  L  *  D  V  K  R  P  E  N  R  K  L  Y  S  W  Q  C  V  D  M  D  I  L  I  C  H  L  T  I  S  I  C  R  E  A  W  L  I  C  P  S  Q  K  R  K  *  K  P  H  S  R  R  Y  H  N  Q  Y  H  K  L  I  Q  V  E  E  T  M  K  I  G  G  T  *  W  N  L  V  C  T  F  L  H  E  *  C  F  R  S  S  A  K  L  K  N  N  M  P  P  T  P  S  I  F  *  S  N  N  I  R  Y  N  *  L  *  L  C  K  L  L  C  G  L  Q  L  F  E  L  C  V  I  I  Y  M  I  D  L  T  T  M  K  D  L  G  V  A  F  H  H  F  V  L  S  F  V  D  F  F  N  K   </first_frame>
            <second_frame>  K  E  K  N  V  R  L  T  F  F  V  F  Y  F  *  *  C  S  S  V  S  I  S  N  F  Q  Q  A  N  Q  C  R  N  G  S  I  P  P  K  S  V  S  K  R :   *  C  V  W  N  K  V  F  R  D  *  N  K  A  K  S  I  E  A  F  V  *  L  *  S  K  S  K  G  S  S  *  S  S  F  E  F  C  *  N  P  S  A  V  V  Q  S  S  C  R  P  S  N  Q  T  T  S  T  V  A  S  Q  D  V  S  A  Y  Q  T  G  G  L  I  S  A  F  L  *  *  V  D  *  A  G  G  K  H  R  P  V  Y  *  Y  T  G  R  S  F  R  R  L  Q  S  L  A  P  N  P  F  D  *  :  S  K  E  V  G  K  T  A  *  Y  T  R  T  N  I  L  Q  V  *  R  W  *  P  R  G  V  A  Q  A  Q  L  C  C  S  S  G  L  V  Q  *  N  G  E  C  *  K  C  G  Y  G  D  R  G  R  S  M  G  E  R  V  V  V  C  L  Q  L  I  W  S  Q  L  *   : G  M  A  S  S  S  F  V  *  S  E  T  L  S  *  D  D  D  A  N  L  G  C  E  G  A  S  F  S  F  R  P  Y  R  G  R  S  G  Y  S  T  N  G  S  F  K  S  R  K  F  R  N  S  Y  F  R  G  C  G  G  C  S  E  E  R  *  H  Q  V  L  F  G  K  C  S  E  S  C  F  V  T  S  D  R  Y  R  *  G  V  Y  K  T  D  G  G  F  R  R  D  S  R  C  D  H  R  L  H  G  R  W  I  *  F  C  R  T  C  F  P  V  Y  P  G  E  A  *  G  E  N  *  P  S  Y  *  S  G  *  T  Y  S  L  P  L  V  D  E  R  C  V  C  L  R  L  W  R  H  R  R  H  D  S  F  N  E  N  A  Y  T  W  S  *  L  H  T  G  S  H  P  F  R :   G  S  P  L  P  R  H  G  T  T  D  I  T  R  L  *  T  R  I  H  G  S  N  I  N  S  A  D  *  M  F  P  R :   C  Y  S  V  C  E  V  *  G  V  D  T  S  T  R  T  N  A  C  Y  S  R  Y  Y  K  G  S  S  K  M  *  R  D  R  R  I  E  S  Y  T  H  G  N  V  W  T  W  T  F  *  F  V  I  L  R  *  V  F  A  G  K  H  G  *  F  V  L  L  R  R  E  N  K  S  L  T  R  E  D  T  T  T  S  I  I  S  *  S  K  S  R  R  R  *  K  *  E  V  R  S  G  I  W  F  V  L  F  S  T  N  N  V  F  V  V  L  P  S  *  R  I  T  C  P  Q  P  P  Q  S  F  D  R  I  I  F  D  T  I  S  C  S  F  V  S  C  C  V  A  F  N  F  S  S  C  V  *  S  S  I  *  L  T  *  Q  Q  *  R  I  W  E  W  H  F  I  I  L  C  *  V  L  S  I  F  L  I  K  </second_frame>
            <third_frame>   K  K  K  M  L  D  *  H  F  L  S  S  I  F  S  S  V  V  V  F  Q  Y  P  I  F  N  K  Q  I  S  V  E  M  A  V  S  L  P  N  L  F  P  K   : G  D  A  Y  G  T  K  Y  F  E  I  K  T  K  P  S  Q  L  K  L  S  F  S  Y  R  A  R  A  K  A  A  L  N  P  R  S  S  S  V  E  I  P  R  Q  W  Y  N  L  V  A  D  L  P  I  K  P  P  P  P  L  H  P  K  T  F  Q  P  I  K  P  E  D  L  S  P  L  F  C  D  E  L  I  K  Q  E  A  S  I  D  Q  F  I  D  I  P  E  E  V  L  D  V  Y  S  L  W  R  P  T  P  L  I  R :   A  K  R  L  E  K  L  L  D  T  P  A  R  I  Y  Y  K  Y  E  G  G  S  P  A  G  S  H  K  P  N  S  A  V  P  Q  A  W  Y  N  K  M  G  N  V  K  N  V  V  T  E  T  G  A  G  Q  W  G  S  A  L  S  F  A  C  S  L  F  G  L  N  C  E  :  V  W  Q  V  R  A  S  F  D  Q  K  P  Y  R  K  M  M  M  Q  T  W  G  A  K  V  H  P  S  P  S  D  L  T  E  A  G  R  A  I  L  Q  M  D  P  S  S  P  G  S  L  G  I  A  I  S  E  A  V  E  V  A  A  K  N  A  D  T  K  Y  C  L  G  S  V  L  N  H  V  L  L  H  Q  T  V  I  G  E  E  C  I  K  Q  M  E  D  F  G  E  T  P  D  V  I  I  G  C  T  G  G  G  S  N  F  A  G  L  A  F  P  F  I  R  E  K  L  K  G  R  I  N  P  L  I  R  A  V  E  P  T  A  C  P  S  L  T  K  G  V  Y  A  Y  D  Y  G  D  T  A  G  M  T  P  L  M  K  M  H  T  L  G  H  D  F  I  P  D  P  I  H  S   : G  G  L  R  Y  H  G  M  A  P  L  I  S  H  V  Y  E  L  G  F  M  E  A  I  S  I  P  Q  I  E  C  F  Q   : G  A  I  Q  F  A  R  S  E  G  L  I  P  A  P  E  P  T  H  A  I  A  A  T  I  R  E  A  L  R  C  K  E  T  G  E  S  K  V  I  L  M  A  M  C  G  H  G  H  F  D  L  S  S  Y  D  K  Y  L  Q  G  S  M  V  D  L  S  F  S  E  E  K  I  K  A  S  L  A  K  I  P  Q  P  V  S  *  V  D  P  S  R  G  D  D  E  N  R  R  Y  V  V  E  F  G  L  Y  F  S  P  R  I  M  F  S  *  F  C  Q  V  E  E  *  H  A  P  N  P  L  N  L  L  I  E  *  Y  S  I  Q  L  V  V  A  L  *  V  V  V  W  P  S  T  F  R  V  V  C  N  H  L  Y  D  *  L  D  N  N  E  G  S  G  S  G  I  S  S  F  C  A  K  F  C  R  F  F  *  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106778" stop="106670"/>
                    <exon start="105757" stop="105424"/>
                    <exon start="105350" stop="105134"/>
                    <exon start="105057" stop="104520"/>
                    <exon start="104440" stop="104342"/>
                    <exon start="104120" stop="103864"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFLSSIFSSVVVFQYPIFNKQISVEMAVSLPNLFPKGDAYGTKYFEIKTKPSQLKLSFSYRARAKAALNPRSSSVEIPRQWYNLVADLPIKPPPPLHPKTFQPIKPEDLSPLFCDELIKQEASIDQFIDIPEEVLDVYSLWRPTPLIRAKRLEKLLDTPARIYYKYEGGSPAGSHKPNSAVPQAWYNKMGNVKNVVTETGAGQWGSALSFACSLFGLNCEVWQVRASFDQKPYRKMMMQTWGAKVHPSPSDLTEAGRAILQMDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQTVIGEECIKQMEDFGETPDVIIGCTGGGSNFAGLAFPFIREKLKGRINPLIRAVEPTACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHSGGLRYHGMAPLISHVYELGFMEAISIPQIECFQGAIQFARSEGLIPAPEPTHAIAATIREALRCKETGESKVILMAMCGHGHFDLSSYDKYLQGSMVDLSFSEEKIKASLAKIPQPVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105169" e_stop="104672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="105169" e_stop="104672" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105169" stop="104672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105169" stop="104684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAAT</gDNA_template>
            <first_frame> S  F  A  C  S  L  F  G  L  N  C  E  V  N  V  S  V  V  Y  V  F  I  C  D  E  G  V  H  P  P  R  S  R  I  F  S  A  G  M  A  S  S  S  F  V  *  S  E  T  L  S  *  D  D  D  A  N  L  G  C  E  G  A  S  F  S  F  R  P  Y  R  G  R  S  G  Y  S  T  N  G  S  F  K  S  R  K  F  R  N  S  Y  F  R  G  C  G  G  C  S  E  E  R  *  H  Q  V  L  F  G  K  C  S  E  S  C  F  V  T  S  D  R  Y  R  *  G  V  Y  K  T  D  G  G  F  R  R  D  S  R  C  D  H  R  L  H  G  R  W  I  *  F  C  R  T  C  F  P  V  Y  P  G  E  A  *  G  E  N </first_frame>
            <second_frame>  R  L  L  A  A  Y  L  V  S  I  V  R  *  M  C  L  *  F  T  C  S  F  A  M  R  E  F  I  R  P  D  L  E  F  S  V  Q  V  W  Q  V  R  A  S  F  D  Q  K  P  Y  R  K  M  M  M  Q  T  W  G  A  K  V  H  P  S  P  S  D  L  T  E  A  G  R  A  I  L  Q  M  D  P  S  S  P  G  S  L  G  I  A  I  S  E  A  V  E  V  A  A  K  N  A  D  T  K  Y  C  L  G  S  V  L  N  H  V  L  L  H  Q  T  V  I  G  E  E  C  I  K  Q  M  E  D  F  G  E  T  P  D  V  I  I  G  C  T  G  G  G  S  N  F  A  G  L  A  F  P  F  I  R  E  K  L  K  G  R   </second_frame>
            <third_frame>   V  C  L  Q  L  I  W  S  Q  L  *  G  K  C  V  C  S  L  R  V  H  L  R  *  G  S  S  S  A  P  I  *  N  F  Q  C  R  Y  G  K  F  E  L  R  L  I  R  N  L  I  V  R  *  *  C  K  L  G  V  R  R  C  I  L  L  L  P  T  L  Q  R  P  V  G  L  F  Y  K  W  I  L  Q  V  Q  E  V  *  E  *  L  F  Q  R  L  W  R  L  Q  R  R  T  L  T  P  S  I  V  W  E  V  F  *  I  M  F  C  Y  I  R  P  L  S  V  R  S  V  *  N  R  W  R  I  S  E  R  L  Q  M  *  S  S  V  A  R  E  V  D  L  I  L  Q  D  L  L  S  R  L  S  G  R  S  L  R  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105117" stop="104674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTCSFAMREFIRPDLEFSVQVWQVRASFDQKPYRKMMMQTWGAKVHPSPSDLTEAGRAILQMDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQTVIGEECIKQMEDFGETPDVIIGCTGGGSNFAGLAFPFIREKLKGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="121795" PGL_stop="125924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121795" e_stop="121950"/>
            <exon e_start="122062" e_stop="122130"/>
            <exon e_start="122433" e_stop="122462"/>
            <exon e_start="123516" e_stop="123548"/>
            <exon e_start="124356" e_stop="124426"/>
            <exon e_start="125176" e_stop="125257"/>
            <exon e_start="125371" e_stop="125469"/>
            <exon e_start="125603" e_stop="125924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121795" e_stop="121950" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.948">
            <gDNA_intron_boundary i_start="121951" i_stop="122061" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122062" e_stop="122130" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.794">
            <gDNA_intron_boundary i_start="122131" i_stop="122432" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122433" e_stop="122462" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.983">
            <gDNA_intron_boundary i_start="122463" i_stop="123515" i_length="1053"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123516" e_stop="123548" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123549" i_stop="124355" i_length="807"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124356" e_stop="124426" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.965">
            <gDNA_intron_boundary i_start="124427" i_stop="125175" i_length="749"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125176" e_stop="125257" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.881">
            <gDNA_intron_boundary i_start="125258" i_stop="125370" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="125371" e_stop="125469" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="125470" i_stop="125602" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="125603" e_stop="125924" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121795" stop="121950"/>
              <exon start="122062" stop="122130"/>
              <exon start="122433" stop="122462"/>
              <exon start="123516" stop="123548"/>
              <exon start="124356" stop="124426"/>
              <exon start="125176" stop="125257"/>
              <exon start="125371" stop="125469"/>
              <exon start="125603" stop="125875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121796" stop="121950"/>
              <exon start="122062" stop="122130"/>
              <exon start="122433" stop="122462"/>
              <exon start="123516" stop="123548"/>
              <exon start="124356" stop="124426"/>
              <exon start="125176" stop="125257"/>
              <exon start="125371" stop="125469"/>
              <exon start="125603" stop="125708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121796" stop="121950"/>
              <exon start="122062" stop="122130"/>
              <exon start="122433" stop="122462"/>
              <exon start="123516" stop="123548"/>
              <exon start="124356" stop="124426"/>
              <exon start="125176" stop="125257"/>
              <exon start="125371" stop="125446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121863" stop="121950"/>
              <exon start="122062" stop="122130"/>
              <exon start="122433" stop="122462"/>
              <exon start="123516" stop="123548"/>
              <exon start="124356" stop="124426"/>
              <exon start="125176" stop="125257"/>
              <exon start="125371" stop="125469"/>
              <exon start="125603" stop="125924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG : GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG : GTGATTACTTCTTTGCATGAGGATATAGAG : GATGAATTTGAGTCTTTATGTGTGGAGACACAG : GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA : AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG : GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG : ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATACAT</gDNA_template>
            <first_frame> N  L  F  Q  K  I  T  *  F  F  Q  S  P  A  I  A  E  E  M  E  K  T  K  E  E  I  A  G  T  R  Q  T  N  L  K  T  A  F  E  L  G  I  H  S  L  L  T  S  C  S  K  E  :  G  F  C  K  A  F  P  N  F  A  P  A  E  V  E  R  L  H  R  L  F  I  Q  :  V  I  T  S  L  H  E  D  I  E  :  D  E  F  E  S  L  C  V  E  T  Q  :  A  G  S  T  L  N  M  V  E  Q  L  V  E  E  Q  N  L  D  P  L  F  P  E  K :   S  N  V  E  E  V  R  H  F  L  S  E  A  K  Q  N  E  I  N  Y  L  T  T  M  L  E  T  :  A  E  E  Q  K  R  S  I  T  S  R  L  E  T  L  K  K  Q  R  H  D  F  S  D  A  A  A  T  D  I  V  N  K  :  I  R  T  G  N  Q  K  Y  N  T  N  N  N  I  G  F  H  N  *  Y  W  P  R  L  M  H  P  I  R  P  *  S  C  V  Y  S  R  R  W  I  K  L  E  T  I  R  T  S  I  S  M  C  L  *  N  L  K  *  I  S  C  I  C  F  Q  F  Q  A  S  K  Q  G  C  L  F  L  V  H  L  K  C  L  Y  M  T  F  V  C  H  *  L  K  H  *  N  K  *  K  D  Y  *  F  H  L  F  Y  T  </first_frame>
            <second_frame>  I  F  F  K  K  *  P  N  F  F  N  L  P  P  L  L  K  K  W  R  K  R  R  K  K  L  Q  E  Q  G  R  R  I  *  K  L  H  L  S  L  E  F  T  L  C  *  L  H  V  L  K  R :   D  F  V  K  L  S  L  I  L  L  Q  Q  K  L  N  A  F  I  G  C  S  F  R :   *  L  L  L  C  M  R  I  *  R :   M  N  L  S  L  Y  V  W  R  H  R :   Q  D  Q  L  S  T  W  W  S  S  L  W  K  N  K  T  W  T  L  C  F  Q  R   : K  A  M  L  K  K  S  G  T  S  Y  Q  K  Q  N  R  M  R  S  T  T  *  R  L  C  W  R  R :   Q  K  N  R  N  A  P  S  L  L  V  L  K  P  *  R  N  K  D  M  I  S  L  M  L  L  L  Q  T  L  S  I  R :   Y  E  L  G  I  R  S  T  I  R  T  T  I  L  A  S  I  I  D  T  G  L  V  *  C  I  L  S  A  L  S  P  A  S  T  R  E  D  G  L  N  *  R  L  S  E  L  P  F  Q  C  A  C  E  I  *  S  K  L  V  A  F  A  F  N  F  K  Q  V  N  K  V  V  Y  F  L  F  T  *  N  A  C  I  *  H  L  Y  V  I  N  *  S  T  R  I  S  E  R  T  T  S  F  I  S  F  I  H </second_frame>
            <third_frame>   S  F  S  K  N  N  L  I  F  S  I  S  R  H  C  *  R  N  G  E  N  E  G  R  N  C  R  N  K  A  D  E  F  E  N  C  I  *  A  W  N  S  L  F  V  N  F  M  F  *  R   : G  I  L  *  S  F  P  *  F  C  S  S  R  S  *  T  P  S  S  V  V  H  S   : G  D  Y  F  F  A  *  G  Y  R   : G  *  I  *  V  F  M  C  G  D  T   : G  R  I  N  S  Q  H  G  G  A  A  C  G  R  T  K  L  G  P  F  V  S  R  E  :  K  Q  C  *  R  S  Q  A  L  P  I  R  S  K  T  E  *  D  Q  L  L  D  D  Y  V  G  D   : G  R  R  T  E  T  L  H  H  F  S  S  *  N  P  E  E  T  K  T  *  F  L  *  C  C  C  Y  R  H  C  Q  *   : D  T  N  W  E  S  E  V  Q  Y  E  Q  Q  Y  W  L  P  *  L  I  L  A  S  S  D  A  S  Y  P  P  L  V  L  R  L  L  E  K  M  D  *  T  R  D  Y  Q  N  F  H  F  N  V  P  V  K  S  K  V  N  *  L  H  L  L  S  I  S  S  K  *  T  R  L  F  I  S  C  S  L  K  M  L  V  Y  D  I  C  M  S  L  I  K  A  L  E  *  V  K  G  L  L  V  S  S  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121819" stop="121950"/>
                    <exon start="122062" stop="122130"/>
                    <exon start="122433" stop="122462"/>
                    <exon start="123516" stop="123548"/>
                    <exon start="124356" stop="124426"/>
                    <exon start="125176" stop="125257"/>
                    <exon start="125371" stop="125469"/>
                    <exon start="125603" stop="125659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQSPAIAEEMEKTKEEIAGTRQTNLKTAFELGIHSLLTSCSKEGFCKAFPNFAPAEVERLHRLFIQVITSLHEDIEDEFESLCVETQAGSTLNMVEQLVEEQNLDPLFPEKSNVEEVRHFLSEAKQNEINYLTTMLETAEEQKRSITSRLETLKKQRHDFSDAAATDIVNKIRTGNQKYNTNNNIGFHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="126960" PGL_stop="131594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126960" e_stop="127432"/>
            <exon e_start="128664" e_stop="128726"/>
            <exon e_start="128840" e_stop="128956"/>
            <exon e_start="130068" e_stop="130350"/>
            <exon e_start="131520" e_stop="131594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.430" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.992" e_score="0.989"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126960" e_stop="127432" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="127433" i_stop="128663" i_length="1231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128664" e_stop="128726" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.430">
            <gDNA_intron_boundary i_start="128727" i_stop="128839" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128840" e_stop="128956" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128957" i_stop="130067" i_length="1111"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="130068" e_stop="130350" e_length="283"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.992">
            <gDNA_intron_boundary i_start="130351" i_stop="131519" i_length="1169"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="131520" e_stop="131594" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126960" stop="127215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126962" stop="127432"/>
              <exon start="128664" stop="128726"/>
              <exon start="128840" stop="128956"/>
              <exon start="130068" stop="130273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126977" stop="127432"/>
              <exon start="128664" stop="128726"/>
              <exon start="128840" stop="128956"/>
              <exon start="130068" stop="130149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127207" stop="127432"/>
              <exon start="128664" stop="128726"/>
              <exon start="128840" stop="128956"/>
              <exon start="130068" stop="130350"/>
              <exon start="131520" stop="131594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA : GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG : TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG : TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAG : GCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATG</gDNA_template>
            <first_frame> R  F  G  C  R  S  L  Q  F  V  E  I  S  A  K  F  L  I  L  N  Q  L  A  K  T  P  I  H  E  N  N  *  V  T  E  I  F  C  *  K  S  Y  F  L  F  I  L  *  L  N  Y  Q  E  S  *  N  P  I  S  P  T  I  T  I  F  H  R  F  Y  H  H  S  R  L  G  V  *  R  G  G  G  G  G  V  D  C  D  E  M  I  K  M  A  A  V  S  V  G  N  G  N  E  V  W  R  A  H  G  T  M  A  M  I  Q  L  L  Y  G  G  Y  H  V  I  T  K  V  A  L  N  V  G  M  N  Q  I  V  F  C  L  Y  R  D  L  L  A  L  S  I  L  A  P  V  A  Y  V  R  E  K :   R  S  R  I  P  L  N  R  R  L  L  L  S  F  F  F  L  G  L  T  G :   I  F  G  N  Q  L  L  F  L  I  G  L  G  Y  T  N  P  T  Y  A  A  A  V  Q  P  A  I  P  V  F  T  F  I  F  A  V  L  M  G :   T  E  T  V  K  L  F  T  V  E  G  Q  A  K  V  G  G  T  I  V  C  V  S  G  A  I  L  M  A  I  F  R  G  P  V  V  F  G  D  R  S  S  E  F  I  H  S  D  I  S  A  K  G  Q  P  E  P  T  G  W  L  M  S  S  F  V  E  L  G  F  D  D  W  H  L  G  V  L  C  L  I  G  N  C  M  C  M  A  A  Y  L  A  I  Q  :  A  P  V  L  A  K  Y  P  A  S  I  S  V  T  A  Y  S  Y  L  F  G  C  L  L  M </first_frame>
            <second_frame>  D  L  D  V  G  H  F  N  S  L  K  S  Q  L  N  S  *  F  *  T  N  *  R  K  P  Q  F  M  K  T  T  R  *  L  K  F  S  V  K  N  H  T  F  C  S  F  Y  S  L  I  I  K  N  L  E  T  P  S  H  Q  P  S  L  F  S  T  D  F  I  I  T  V  V  *  G  Y  K  G  V  V  G  V  G  W  I  V  M  K  *  *  K  W  Q  L  Y  Q  W  E  M  G  M  R  Y  G  E  L  M  E  Q  W  R  *  Y  S  F  C  M  V  D  T  M  *  L  Q  K  W  H  S  M  W  E  *  I  K  L  C  S  V  C  I  G  I  F  L  L  Y  L  F  L  H  Q  L  P  M  F  A  K   : R  G  R  G  F  L  *  I  G  G  F  C  Y  P  S  S  F  *  D  *  L   : V  F  L  G  T  N  F  C  F  L  L  V  L  V  T  Q  I  Q  H  M  L  Q  P  C  N  L  Q  Y  Q  S  S  H  S  Y  L  Q  Y  *  W   : V  Q  K  Q  *  S  F  L  L  W  K  V  K  Q  R  L  E  V  R  L  F  V  F  L  G  Q  S  *  W  P  S  S  V  D  L  W  C  L  E  T  E  A  Q  N  S  Y  T  V  I  *  V  L  R  V  S  Q  S  L  L  D  G  *  C  Q  V  S  W  N  W  V  L  M  I  G  T  S  V  F  Y  A  *  *  E  T  V  C  A  W  Q  H  T  *  L  F  R :   L  Q  F  W  Q  N  T  L  Q  V  Y  Q  *  R  H  I  H  T  F  L  V  A  F  *   </second_frame>
            <third_frame>   I  W  M  *  V  T  S  I  R  *  N  L  S  *  I  L  D  F  E  P  I  S  E  N  P  N  S  *  K  Q  L  G  D  *  N  F  L  L  K  I  I  L  S  V  H  S  I  A  *  L  S  R  I  L  K  P  H  L  T  N  H  H  Y  F  P  P  I  L  S  S  Q  S  F  R  G  I  K  G  W  W  G  W  G  G  L  *  *  N  D  K  N  G  S  C  I  S  G  K  W  E  *  G  M  E  S  S  W  N  N  G  D  D  T  A  F  V  W  W  I  P  C  D  Y  K  S  G  T  Q  C  G  N  E  S  N  C  V  L  F  V  *  G  S  S  C  S  I  Y  S  C  T  S  C  L  C  S  R  K  :  E  V  E  D  S  F  E  *  A  A  S  A  I  L  L  L  S  R  I  N  W  :  Y  F  W  E  P  T  F  V  S  Y  W  S  W  L  H  K  S  N  I  C  C  S  R  A  T  C  N  T  S  L  H  I  H  I  C  S  I  D  G  :  Y  R  N  S  E  A  F  Y  C  G  R  S  S  K  G  W  R  Y  D  C  L  C  F  W  G  N  L  N  G  H  L  P  W  T  C  G  V  W  R  Q  K  L  R  I  H  T  Q  *  Y  K  C  *  G  S  A  R  A  Y  W  M  V  N  V  K  F  R  G  I  G  F  *  *  L  A  P  R  C  F  M  L  N  R  K  L  Y  V  H  G  S  I  L  S  Y  S   : G  S  S  F  G  K  I  P  C  K  Y  I  S  D  G  I  F  I  P  F  W  L  P  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127191" stop="127432"/>
                    <exon start="128664" stop="128726"/>
                    <exon start="128840" stop="128956"/>
                    <exon start="130068" stop="130350"/>
                    <exon start="131520" stop="131594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGGGGGVDCDEMIKMAAVSVGNGNEVWRAHGTMAMIQLLYGGYHVITKVALNVGMNQIVFCLYRDLLALSILAPVAYVREKRSRIPLNRRLLLSFFFLGLTGIFGNQLLFLIGLGYTNPTYAAAVQPAIPVFTFIFAVLMGTETVKLFTVEGQAKVGGTIVCVSGAILMAIFRGPVVFGDRSSEFIHSDISAKGQPEPTGWLMSSFVELGFDDWHLGVLCLIGNCMCMAAYLAIQAPVLAKYPASISVTAYSYLFGCLLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 363 chains have been computed
$ 
$ memory statistics:
$ 673136 bytes spliced alignments in total
$ 186 spliced alignments have been stored
$ 3619 bytes was the average size of a spliced alignment
$ 30600 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1800 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 394 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:27:01
-->
