<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:31:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8417" ref_strand="+" ref_description="SGN-M8417 C2_At4g31150 [cosii_markers]">
      <seq>tttccgaatcatactagctacgttgttgttgtaaagtttgaatctttatgtattaggtgggtactgttttaatcagcttaggattcaaggttctgtaatgggtcagctgattactgaagatgtgaagtttttatctttagtagaatttgtttgctcatgtaaagtttgaatctttacaagttgggctttttgaatcagcttagagttcaagattctctaatggggcaactgattactgaaaatggttcaagattctctaaaggggaaattgattactgaagatgacttcaaatggagattgcccacaagagaaaaagaaggaagttgtgaaatattgaagtatgttggtggggttgacttaagtttttcaaaagatgattcatctattgcctgtggcactcttgttgtgttggacttgacgactcagaaagttgtttatgaagattcgtctattgttaggcttcacattccatatcttcctggcttccttgctttcagagaggctcctgtgcttctggaacttttggataaaatgaagaacaatgctcattgtttctacccgcagctactaatggttgatggcaatggattgcttcatcctcgaggttttggtttggcttgtcatattggtgtcttagctgatcttcctactgttggggtgggaaagaatttacaccacgttgatggtcttacacaatctacggtaagagaactccttcaagcagcagactctcccgaacatatcttaccgctaattggggactctggatgtatctggggagcggcaatgcgatcatctgagggctctttgaagcccatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="+" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="45619" stop="49901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45919" g_stop="46161" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46162" i_stop="46579" i_length="418">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46580" g_stop="46838" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="502" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46983" g_stop="47045" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="565" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47046" i_stop="47677" i_length="632">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47678" g_stop="47717" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="605" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47718" i_stop="48712" i_length="995">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48713" g_stop="48777" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="670" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49253" g_stop="49366" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="784" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195">
            <donor d_prob="0.444" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49562" g_stop="49601" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="824" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="+" ref_id="SGN-M8417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45919" e_stop="46161"/>
          <exon e_start="46580" e_stop="46838"/>
          <exon e_start="46983" e_stop="47045"/>
          <exon e_start="47678" e_stop="47717"/>
          <exon e_start="48713" e_stop="48777"/>
          <exon e_start="49253" e_stop="49366"/>
          <exon e_start="49562" e_stop="49601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCTGTAGTCATTTTTGCACATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTAAAGTTTTTAGCTTCAGTAGTCATTTTTGCAAATGTAAAGTTTGAATCTTTACAAGTTGGAGCTTAGAATTCAAGATTCTTTAATGGGGTAACTGATTACTGAAAATGTATAGATTTTTGCTTCATTAGTAATTTTACACATGTAAAGTTTGATTTACAAGTAGTTTGCTGTTTTAATCAGCTTAGAATTCAAGATTCTCCAATGGGGTAACTGATTATTGAAGATGTAATGTTTTTTGCTTCAGTAGTAATTTATGTACATGTAAAGGTTATCTTTACAAGTTGGATACTTTTTTACTCAGCTCAGGGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAGGTCTTATACATATTCTCTATATTATCCGTTGCTCGCAATGTGTTTTGACTTATCGCCTTTGTTGTTTGTCTAAAAAGGAGGGATCATGTCTATATGTTTTGAATAATGTAAACTGATATCTGTAATATTGAACTGGTTCTTTAGGCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAGGTAAATGTTGATAACTTTCCTCCTTCGTTGCTCCCCTCTCCCTACTTATTTTCAGTCTACAAATGGTGAAACATTGATCAAGAGTGTATACCATGTAGTAAAAGAACTGTAGAGCTGCAATCGTCTCCTGGAAAGACATTGTATAGTATTCGGCAGGTTAGACCAACTCTACACCTTCCGCATACCATCAGTATTCTGCTTCACACTGAACCCGTTCCCGATTATAGGCAGGAAGTTTGACCTCATCTGCTAACTCAAATAGATGAAGCACATTGTATTACTCTATCTACTATGATGTACTCAAGAGGGCAAAAGGCACAATTTTGGTAAAACAATATAAGAATAATGTTGAAGTTGTACAAACGGAAGCCTCATTTGGCAGTGTAACAGGACCAAAACATCTAAGAGTTAGTGGTTGTATTTAGTTTTACGGGCATTTAAGTGGAACTTTGACTTCCAATATAGATGCCGCTAAGGGTTTATGTTACAAAACTTGCTCTCACTGGTAATTCTAATTCTTCCCCCTTCCCTTTTCGCTTATATCGAACCTGTAGTAGGAACCAACAGACATTATTGAGCTGGACAACGTAAAATCTAATACCTGACATCGATTTTAACCTTCGTGTTGACAGCTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAGGCAAGTTTTGTTTCTATTTGAAGCTGGAAAAAAAGAGAATTCCTAAGTCTAGCAGATTGTTTAGTAGATACCAACATCCAACATCATGATCATATTCTCCTAACTTGTGTCTGTGTCGAAGTAATTACTAGTAACTTTTATTCCCAAAGCTTATTCTATGAAAAATGTATATTAGTGTAAATAGCTTAGGTAATCCCCCAGACACGAAAACTGAGTTTTCCAATCTCTTGATACCATTTTAGCTTTTTATATCCTCTATAGCGTATATCAGCTAGTTGGTTCTCGGATATTGACTGTAAATGTTAATTCTCTTTGGATATTTCTCTATTTTATATCTCTCTTCTTATATATTTGCTGCTAATGCTTTTTCCGAACAGACGAGATCTGAAATGTAATTCGTTCTCAGCTGACGTAATACTGAAGCTCCATTAATCATTCTCTAAGACTTTCCACTACATGTCGAGATCAATGTGCTTAATCTATGACACTAAGTTGACACTGTCATATTTGTGTTATCAGAAGGAATTGCTTTCTGCTAATCGGGATCTTTTTTATCCCGATAATAATTTGACTGGATTAAAGAACACAATCATTTGTTGGTTCTAAAGTTGGTGCTATGAGTAGTTTCACAACCTTCCAAATCAAGTTAACAAGGGTCTGAACTGTTTGAATGTGAAGTTCTGCCATGGCTTTGTAAAGATATTTCAGCTTTAATCATCCCCTTGATATAACTTACGATTAAGTTCCTCTTAGATGCTCTTTGGGAAAACTGTTCATGAAAACTAGAAAGTTTGGCTTCACTGACTAGTTTTATCTGTATCGCTTGTTGAATCACTGACTGTTCAACTCGAGAGAGTTTTTTATATATGATAGCATATGGACATGGGTAATCTTTATCAATTTAAACTCGTGATTGAGTATGCAATACGAATTCCTCCTGCACTATTTCACACTTCTTTTTGCTAAAAACTCTACAACCACATTATGTTCTGCAGGTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAATGTAAGTCTAAACTTCTTTATCCACCTCTTAAAAATCTAGGTAGACTCAATCGAAACGTGCTTTTGTTTGTTCGCTCTTAGTGAAGAAACAAAAAGCGAACCTAATGTGGGAAGGAAATATAGAACGTTGTTTGATCTTTCTCGTTGAATCTCTAACGACAACATACCCAATGTAATCCGTCAAGGGGGGTCTACGGTTGGTGGAGTGTACACAAACCTTACCCTTACCTCGTGGAGGTAGAGAGGCTGTTTCTGAAAGATTGGACACTACTCTGTGCAGGATACTGAACTGGCGAACATCTCCTAGTATTCTGCCTGTCCTGCTAACGCGGGATGCTTTGTGCATTTGACTTGCCACTTTTTCTCTACTTATACATAGCCTTAGCTCGATATTGAATTATTTCTGTATGACTAGTTTTGCAACAGTTGTGAACTGGTTTATGAACATTCTGTCTTTCTGTCTTTTCTTTTTCTAGTTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCGGTACGACAGTCTTTCTTTATCCTTGAAATATGTTAACAACAACGACTATCCCTCAGTCTCAAACAAGTTGGCCAAATTATTCCAGAAATGAAAAATGAGTTGTAACTTTGTGTTGGCTCGATTACGTGTGAATTTTACTGTAGTATCTATTCTATTCCATCACAAGCTTCGTATGTTGATTAAATCCTCTTGCAGGCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTA</genome_strand>
        <mrna_strand>TTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG................................................................................................................................................GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG...................................................................................................................................................................................................GCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6764" ref_strand="+" ref_description="SGN-M6764 C2_At1g31600 [cosii_markers]">
      <seq>ccggcgatgaagttttgctggtattgatcttaatataatacatgggattgccgagatttaaacgtcctgtagggactagtgaaccaagttcaaatctttatgtggccaattgtggacctgcagttggactaactttggacacaattgaagccgtatttggtgcatatggtcaagttaagggagtccatcttgctgatgaaagtggcactagagttattgtgtcttatcatgaagaaaagtctgcagaatctgccctgacggagttgaatagacgtgaatgtcctgagcttggtggccggtctttgcacattcagtattcagtaccctctatttgtcaggttgcagtggatgactcaattgaggtgtcgatggaagcttcagagttagatattcctggtctttacttgattcatgacttcatcagtgtcaaagaggaggaggaactacttgcagctgttgattcaaggccttggcaaaaacttgctaaaagaagggtgcagcattatggttatgagtttcactataatacgaggaatgtcaacacaaatcagtacttgggtgaacttccatcatttcttttgccaatacttgacaagatgtcaaagtttcaaaagcttggttacacagaaaccgtacttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="73966" stop="70441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73666" g_stop="73647" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73646" i_stop="72900" i_length="747">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.875" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72899" g_stop="72582" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="338" r_length="318" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72581" i_stop="72051" i_length="531">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72050" g_stop="71949" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="440" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71948" i_stop="71822" i_length="127">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71821" g_stop="71735" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="527" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71734" i_stop="70858" i_length="877">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70857" g_stop="70741" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="644" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-M6764" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73666" e_stop="73647"/>
          <exon e_start="72899" e_stop="72582"/>
          <exon e_start="72050" e_stop="71949"/>
          <exon e_start="71821" e_stop="71735"/>
          <exon e_start="70857" e_stop="70741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGGTGAAGTTTTGCTGGTAAGATTTCTCTTTTCTTCTTTTATCATAAAGAATCAATGGAATTGCTATTTAATTCAGAAAATGATGTTATTTTTAAAATATAAATAAAAATGACGAGACCAAATTAATATGTAAATATGGAGTTTGCAAATTCTTGTTCTTAAGATTGTTTCATATTCAGGTAGGAATGTTCTTAAGGAATTGAATTTGAAGGGTCTAATTAGTTTTTAGGGAGGTAGGATTTCTCCGTATATATACTGGGTCAGAGGCGGATTCAGGATTTGAAGTTTTCGTTATTGTATATCAGTTTGAGCAAAAGCTATTGGGCTCCCGTGAACCTTTATAGCACTCTGTATGTATTCTAGCTAAATGAAGATGCAAGAATGGTGCTTTCTTGATTTAGCATGAAGTTTGAGGTGATTTCTCAGATTGTCACTCGACTAATAGTTGTTATCTTACAAAGTTACTATCTTTGTTGAAAAAAAAAATTGGAATCAAGAAGAAGGGTGAATTATTTACCTTTCTGAGATGATAAATATTAGTTGAGCGTGTAAGAAATCAACCCCGTGAAATTTTTAAGCTTAAGATGTAGATTAGTTCTCGTTTCGTGGTGAATATTGGTGAGCTTGCTAAGTAGTAGAGAGATAGTTGTAGTGATGTGATACAAGGTTATGCTTCGTTGTTCGACTATCAAGGATCTATGTTTGTCTGATACATGAGTAACTTCTATGTGGTGAGGTAAAGCCCCAAAATTTCTGGTTGTAGGTATTGATTATAGTAAAACACATGGGATTGCCGAGATTTAAACGTCCTGTAGGGACTAGCGAACCAAGTTCAAATCTTTATGTGGCCAATTGTGGACCTGCAGTTGGACTAACTTTGGACACAATTGAAGCCGTATTTGGTGCATATGGTCAAGTTAAGGGAGTCCATCTCGCTGATGAAAGTGGCACTAGAGTTATTGTGTCTTATCATGAAGAAAAGTCTGCAGAATCTGCCCTGACGGCGTTGAATAGACGAGCATGTCCTGAGCTTGGTGGCCGGTCTTTGCACATTCAGTATTCAGTACCTTCTGTTTGTCAGGTAAATTATCTTTATCCACAGTAAAGTCTTGATCTTTTTGCCAGTCTTGTAATTTTCATGAGATTGTTTACCGTGCTTTTCTTTTGAGCATGTTGATTCAATTATTATTTTGAATGTACTGTACAGTGGAATTAGAAAGTCAGCTTTAAAGCATGATATAACATAACTGATTGCATAGAGCTTCTGAGGGACCTTCACCATTCTTCCTTTCGCTTAACATGTTTGCATTTCTTGCTAGTCATTGCTAAATGAAAATCGAATTTATGAAGGATGATTTAGTCATATAGGAAACAATGCACTCATGCTTGACGTAAGCACCCGTTTTCATGAATTAACGTTTGTGTTCTTATATCAATTTCGGCCATGCTATTTAGGAACTGGTCAGTGTGTGTGTGAACTGTGGGTATTAAGTGGAAATTGTATCAGTTTAGCATAGAGATTACCGATTTCTTTTGTCTTTACTCCCTTGAGTAACTTCTATTGATTGCTTGTATATGTTTATTTTCTTTATGAGCTTGCTTTCTGGTTCAGGTTGCAGTGGATGACTCAATTGAGGTGTCGATGGAATCTTCAGAGTTAGATATTCCTGGTCTTTACTTGATTCATGACTTCATCAGTGTCAAAGAGGAGGAGGTCAGGGATCTCATTTTGCGGGAAAATACTATAGGCACTTACACTGTTCTTATATTTTCTCGATTTTTCCGCAAAATTTATTTGAAAAGTTCCACCCTAGTCTGACTCAGTTTTCTTGAATCTTTAGGAACTACTTGCAGCAGTTGATTCAAGGCCTTGGCAAAGACTTGCTAAAAGAAGGGTGCAGCATTATGGTTATGAGTTCCACTATAATGTAAGTGCACATAGTGGGTATTAGGAACTATGGAAATGCAAGTAATTATACTGGCATATAGCAGAAGCATGTTATTTTTTGCCGTTAGATATATGTATAAGAAGAATTAGTTTCTTTGCTCTTTTTTACATCTGTGACCTGTTTTATTAGAAAATCTAACGGAATCTTCTACAAACAATCCTACCCCACCCCGGTCAAATGAACAAATTATATCAAATATGGGAGAAGAAAAGAGTAAGATGGTTTTAATTGAACTTTCTTGATTTCCCTTGTTTGTGTCCTTTGATTTTGTAACGAAGGACTACACAAGTACACACTCTTGTTCACAGAACTCGTGGTAGTGAAAGAGGTAAGGGTAGCATATTGGGTTAGAGGGAATTAGCATTTCCAAAACCAGTAAATCAGTAAAGCGGGGGATGTGCGGTTGGCACACATTATGAGCTTGAATCCTAGTGCGGAAGAGGGTAGGACCCATTATCTACGGACTTCAGAAGTTGGAAACAATGGACTTCTCGGTTTTGAAAAGATATATCAGTAAATCATACAAAACACCAATGACCATCAAGGACAACTGAACCCCAATTTTGGTTTGATTAAAAAATGTTCGAGAACTTCTAATTGCCACCTAATGGCCTTATTAGACTCACTTCTGAGCTATCAACAATACCATTCCCGTTCTTGTTTTTTAAATCCCTTGACAATTCAGAACTGCTCGAAAAGTCCATTTGCAGATGTTTGAAACTCTTGAATTTTCTGCTAAAAGCTGCTGATGTCTCTTATATTTGCTTATTTCTGTATATTATTAATCTTTCAAATGCTAGTAAGCTTTAAGATCTAAAATGCACTTATTGAATTCTCTCTCTATTGGCCACTGCAGACGAGGAATGTCAACACAAATCAGTACTTGGGTGAACTTCCATCATTTCTTTCGCCAATACTTGACAAGATGTCAATGTTTCAAAAGCTTGGTTACACTGAAACCGTAGTTATGGAC</genome_strand>
        <mrna_strand>CCGGCGATGAAGTTTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGATCTTAATATAATACATGGGATTGCCGAGATTTAAACGTCCTGTAGGGACTAGTGAACCAAGTTCAAATCTTTATGTGGCCAATTGTGGACCTGCAGTTGGACTAACTTTGGACACAATTGAAGCCGTATTTGGTGCATATGGTCAAGTTAAGGGAGTCCATCTTGCTGATGAAAGTGGCACTAGAGTTATTGTGTCTTATCATGAAGAAAAGTCTGCAGAATCTGCCCTGACGGAGTTGAATAGACGTGAATGTCCTGAGCTTGGTGGCCGGTCTTTGCACATTCAGTATTCAGTACCCTCTATTTGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTGGATGACTCAATTGAGGTGTCGATGGAAGCTTCAGAGTTAGATATTCCTGGTCTTTACTTGATTCATGACTTCATCAGTGTCAAAGAGGAGGAG...............................................................................................................................GAACTACTTGCAGCTGTTGATTCAAGGCCTTGGCAAAAACTTGCTAAAAGAAGGGTGCAGCATTATGGTTATGAGTTTCACTATAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGAATGTCAACACAAATCAGTACTTGGGTGAACTTCCATCATTTCTTTTGCCAATACTTGACAAGATGTCAAAGTTTCAAAAGCTTGGTTACACAGAAACCGTACTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8896" ref_strand="+" ref_description="SGN-M8896 C2_At5g38530 [cosii_markers]">
      <seq>aaaagaaaaaaatgttagactgacattttttgtcttctatttttagtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattttgcaggacttgctttcccgtttatccgggagaagcttaaggggagaattaaccctcttattagagcggttgaacctacagcttgcccctcgttgaccaaaggtgtgtatgcttacgactatggagacaccgcaggcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtagtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaataacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaattagttgtagctttgtaagttgttgtgtggccttcaacttttcgagttgtgtgtaatcatctatatgattgacttgacaacaatgaaggatctgggagtggcatttcatcattttgtgctaagttttgtcgatttttttaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107101" stop="103260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106801" g_stop="106670" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="466" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="683" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105057" g_stop="104520" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="1221" r_length="538" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1320" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104120" g_stop="103561" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1321" r_stop="1880" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1881" polyA_stop="1892"/>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-M8896" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1880</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106801" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACGAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGTGCTAAGTTTTGTCGATTTTTTTAATAAAAA</genome_strand>
        <mrna_strand>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACCAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGTGCTAAGTTTTGTCGATTTTTTTAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2269" ref_strand="+" ref_description="SGN-M2269 T1784 [cos_markers]">
      <seq>gacaccgcaagcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccacggcatggcaccactgatatcacacgtctatgaactcggattcatggaagcaatatcaattccgcagattgaatgtttccaaggtgctattcagtttgcgaggtctgaggggttgataccagcaccagaaccaacgcatgctatagccgctactataagggaagctctaagatgtaaagagaccggagaatcgaaagttatactcatggcaatgtgtggacatggacattttgatttgtcatcttacgataagtatttgcagggaagcatggttgatttgtccttctcagaagagaaaataaaagcctcactcgcgaagataccacaaccagtatcataagttgatccaagtcgaggagacgatgaaaataggaggtacgtcgtggaatttggtttgtacttttctccacgaataatgttttcgtagttctgccaagttgaagaataacatgcccccaaccccctcaatcttttgatcgaataatattcgatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="104895" stop="103408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104595" g_stop="104520" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104440" g_stop="104342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="175" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104120" g_stop="103708" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="588" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-M2269" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104595" e_stop="104520"/>
          <exon e_start="104440" e_stop="104342"/>
          <exon e_start="104120" e_stop="103708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAGGTATCTTTACTACCACTATATCACTTCACTTTCCGTATTATCTCGAGCTAAGCCATGTTCCAATCGAACACCTCAACTCCTGATATAGTGTTCCAATTAGACATTCTCTGTTCAAGTTTGAGAAGAACTTTTGCACGATGTTTTCATTTGTCTATTAGGTAGCTAAGTTAACTTCGTAAAATATTGTCCAAACGCCAACTATGTAATTTTTTTCCGTTCAGGTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAA</genome_strand>
        <mrna_strand>GACACCGCAAGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG.............................................................................................................................................................................................................................GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTCGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8896-2" ref_strand="+" ref_description="SGN-M8896-2 C2_At5g38530-2 [cosii_markers]">
      <seq>gttctgtagaaatggcactatccctcccaaatctgtttccaaaaggtgatgcttatgggacaaagtattttgagattaaaacaaagccaagtcaattgaagctttcttttagctatagagcaagagcaaatgcagctcttaattctcgttcgagttctgttgaaatccctcgtcagtggtataatctagttgcagaccttccaatcaaaccccctccgtcgttgcatcccaagacatttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcgtcgagcagtttattgatataccagaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggagaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggtcacggagactggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaaaatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggcaggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagctaagaatacagacaccaagtattgtttgggaagtgttctcaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaagatttcggagagactccagatgtgatcatcggttgcactggaggtggatctaattttgcaggacttgctttcccgtttatccgggagaagcttaaggggaaaattaatcctctttttagagcggttgaacctacagcttgcccctcgttgacgaaaggtgtatatgcttacgactatggagacacagcaggcatgactcctttaatgaaaatgcatacacttggtcatgacttcataccggatcccatccattccgggggtctccgttaccatggcatggcgccattgatatcacacgtctatgaacctcgattcatggaaagcatatcaattccgcagattgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0067C22-2He88/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0067C22.2" temp_strand="-" temp_description="C12HBa0067C22.2  AC235492.2 htgs_phase:2 submitted_to_sgn_as:gi|238015499|gb|AC235492.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-67C22, WORKING DRAFT SEQUENCE, 10 ordered pieces">
        <position start="107010" stop="104050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106714" g_stop="106670" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105757" g_stop="105424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="379" r_length="334" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105350" g_stop="105134" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="596" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105057" g_stop="104520" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="1134" r_length="538" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104440" g_stop="104349" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1135" r_stop="1226" r_length="92" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0067C22.2" gen_strand="-" ref_id="SGN-M8896-2" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0067C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8896-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106714" e_stop="106670"/>
          <exon e_start="105757" e_stop="105424"/>
          <exon e_start="105350" e_stop="105134"/>
          <exon e_start="105057" e_stop="104520"/>
          <exon e_start="104440" e_stop="104349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACGAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCGGTAAGCCTTTGTCGCGTAGGATAGTTCATTTTATCCCCCTTTACTTGTTCTTCTTATAAAGATTTGAGTTCAATTTCAGGGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGT</genome_strand>
        <mrna_strand>GTTCTGTAGAAATGGCACTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTTATGGGACAAAGTATTTTGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCTTTTAGCTATAGAGCAAGAGCAAATGCAGCTCTTAATTCTCGTTCGAGTTCTGTTGAAATCCCTCGTCAGTGGTATAATCTAGTTGCAGACCTTCCAATCAAACCCCCTCCGTCGTTGCATCCCAAGACATTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCGTCGAGCAGTTTATTGATATACCAGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAGAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTCACGGAGACTGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAAATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCAGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCTAAGAATACAGACACCAAGTATTGTTTGGGAAGTGTTCTCAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAAGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACTGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAAAATTAATCCTCTTTTTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACGAAAGGTGTATATGCTTACGACTATGGAGACACAGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG...............................................................................GGGGTCTCCGTTACCATGGCATGGCGCCATTGATATCACACGTCTATGAACCTCGATTCATGGAAAGCATATCAATTCCGCAGATTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="45919" PGL_stop="49601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45919" e_stop="46161"/>
            <exon e_start="46580" e_stop="46838"/>
            <exon e_start="46983" e_stop="47045"/>
            <exon e_start="47678" e_stop="47717"/>
            <exon e_start="48713" e_stop="48777"/>
            <exon e_start="49253" e_stop="49366"/>
            <exon e_start="49562" e_stop="49601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.706" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.444" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45919" e_stop="46161" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.706" acc_prob="0.850">
            <gDNA_intron_boundary i_start="46162" i_stop="46579" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46580" e_stop="46838" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46839" i_stop="46982" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46983" e_stop="47045" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.894">
            <gDNA_intron_boundary i_start="47046" i_stop="47677" i_length="632"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47678" e_stop="47717" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47718" i_stop="48712" i_length="995"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48713" e_stop="48777" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48778" i_stop="49252" i_length="475"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49253" e_stop="49366" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.444" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49367" i_stop="49561" i_length="195"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49562" e_stop="49601" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45919" stop="46161"/>
              <exon start="46580" stop="46838"/>
              <exon start="46983" stop="47045"/>
              <exon start="47678" stop="47717"/>
              <exon start="48713" stop="48777"/>
              <exon start="49253" stop="49366"/>
              <exon start="49562" stop="49601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCGAATCATACTAGCTACGTTGTTGTTGTAAAGTTTGAATCTTTATGTATTAGGTGGGTACTGTTTTAATCAGCTTAGGATTCAAGGTTCTGTAATGGGTCAGCTGATTACTGAAGATGTGAAGTTTTTATCTTTAGTAGAATTTGTTTGCTCATGTAAAGTTTGAATCTTTACAAGTTGGGCTTTTTGAATCAGCTTAGAGTTCAAGATTCTCTAATGGGGCAACTGATTACTGAAAAT : GGTTCAAGATTCTCTAAAGGGGAAATTGATTACTGAAGATGACTTCAAATGGAGATTGCCCACAAGAGAAAAAGAAGGAAGTTGTGAAATATTGAAGTATGTTGGTGGGGTTGACTTAAGTTTTTCAAAAGATGATTCATCTATTGCCTGTGGCACTCTTGTTGTGTTGGACTTGACGACTCAGAAAGTTGTTTATGAAGATTCGTCTATTGTTAGGCTTCACATTCCATATCTTCCTGGCTTCCTTGCTTTCAGAGAG : GCTCCTGTGCTTCTGGAACTTTTGGATAAAATGAAGAACAATGCTCATTGTTTCTACCCGCAG : CTACTAATGGTTGATGGCAATGGATTGCTTCATCCTCGAG : GTTTTGGTTTGGCTTGTCATATTGGTGTCTTAGCTGATCTTCCTACTGTTGGGGTGGGAAAGAAT : TTACACCACGTTGATGGTCTTACACAATCTACGGTAAGAGAACTCCTTCAAGCAGCAGACTCTCCCGAACATATCTTACCGCTAATTGGGGACTCTGGATGTATCTGGGGAGCG : GCAATGCGATCATCTGAGGGCTCTTTGAAGCCCATATTTA</gDNA_template>
            <first_frame> F  P  N  H  T  S  Y  V  V  V  V  K  F  E  S  L  C  I  R  W  V  L  F  *  S  A  *  D  S  R  F  C  N  G  S  A  D  Y  *  R  C  E  V  F  I  F  S  R  I  C  L  L  M  *  S  L  N  L  Y  K  L  G  F  L  N  Q  L  R  V  Q  D  S  L  M  G  Q  L  I  T  E  N  :  G  S  R  F  S  K  G  E  I  D  Y  *  R  *  L  Q  M  E  I  A  H  K  R  K  R  R  K  L  *  N  I  E  V  C  W  W  G  *  L  K  F  F  K  R  *  F  I  Y  C  L  W  H  S  C  C  V  G  L  D  D  S  E  S  C  L  *  R  F  V  Y  C  *  A  S  H  S  I  S  S  W  L  P  C  F  Q  R   : G  S  C  A  S  G  T  F  G  *  N  E  E  Q  C  S  L  F  L  P  A   : A  T  N  G  *  W  Q  W  I  A  S  S  S  R :   F  W  F  G  L  S  Y  W  C  L  S  *  S  S  Y  C  W  G  G  K  E   : F  T  P  R  *  W  S  Y  T  I  Y  G  K  R  T  P  S  S  S  R  L  S  R  T  Y  L  T  A  N  W  G  L  W  M  Y  L  G  S   : G  N  A  I  I  *  G  L  F  E  A  H  I   </first_frame>
            <second_frame>  F  R  I  I  L  A  T  L  L  L  *  S  L  N  L  Y  V  L  G  G  Y  C  F  N  Q  L  R  I  Q  G  S  V  M  G  Q  L  I  T  E  D  V  K  F  L  S  L  V  E  F  V  C  S  C  K  V  *  I  F  T  S  W  A  F  *  I  S  L  E  F  K  I  L  *  W  G  N  *  L  L  K  M :   V  Q  D  S  L  K  G  K  L  I  T  E  D  D  F  K  W  R  L  P  T  R  E  K  E  G  S  C  E  I  L  K  Y  V  G  G  V  D  L  S  F  S  K  D  D  S  S  I  A  C  G  T  L  V  V  L  D  L  T  T  Q  K  V  V  Y  E  D  S  S  I  V  R  L  H  I  P  Y  L  P  G  F  L  A  F  R  E  :  A  P  V  L  L  E  L  L  D  K  M  K  N  N  A  H  C  F  Y  P  Q  :  L  L  M  V  D  G  N  G  L  L  H  P  R   : G  F  G  L  A  C  H  I  G  V  L  A  D  L  P  T  V  G  V  G  K  N  :  L  H  H  V  D  G  L  T  Q  S  T  V  R  E  L  L  Q  A  A  D  S  P  E  H  I  L  P  L  I  G  D  S  G  C  I  W  G  A  :  A  M  R  S  S  E  G  S  L  K  P  I  F  </second_frame>
            <third_frame>   S  E  S  Y  *  L  R  C  C  C  K  V  *  I  F  M  Y  *  V  G  T  V  L  I  S  L  G  F  K  V  L  *  W  V  S  *  L  L  K  M  *  S  F  Y  L  *  *  N  L  F  A  H  V  K  F  E  S  L  Q  V  G  L  F  E  S  A  *  S  S  R  F  S  N  G  A  T  D  Y  *  K   : W  F  K  I  L  *  R  G  N  *  L  L  K  M  T  S  N  G  D  C  P  Q  E  K  K  K  E  V  V  K  Y  *  S  M  L  V  G  L  T  *  V  F  Q  K  M  I  H  L  L  P  V  A  L  L  L  C  W  T  *  R  L  R  K  L  F  M  K  I  R  L  L  L  G  F  T  F  H  I  F  L  A  S  L  L  S  E  R :   L  L  C  F  W  N  F  W  I  K  *  R  T  M  L  I  V  S  T  R  S :   Y  *  W  L  M  A  M  D  C  F  I  L  E  :  V  L  V  W  L  V  I  L  V  S  *  L  I  F  L  L  L  G  W  E  R  I :   Y  T  T  L  M  V  L  H  N  L  R  *  E  N  S  F  K  Q  Q  T  L  P  N  I  S  Y  R  *  L  G  T  L  D  V  S  G  E  R :   Q  C  D  H  L  R  A  L  *  S  P  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46151" stop="46161"/>
                    <exon start="46580" stop="46838"/>
                    <exon start="46983" stop="47045"/>
                    <exon start="47678" stop="47717"/>
                    <exon start="48713" stop="48777"/>
                    <exon start="49253" stop="49366"/>
                    <exon start="49562" stop="49600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKMVQDSLKGKLITEDDFKWRLPTREKEGSCEILKYVGGVDLSFSKDDSSIACGTLVVLDLTTQKVVYEDSSIVRLHIPYLPGFLAFREAPVLLELLDKMKNNAHCFYPQLLMVDGNGLLHPRGFGLACHIGVLADLPTVGVGKNLHHVDGLTQSTVRELLQAADSPEHILPLIGDSGCIWGAAMRSSEGSLKPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="73666" PGL_stop="70741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73666" e_stop="73647"/>
            <exon e_start="72899" e_stop="72582"/>
            <exon e_start="72050" e_stop="71949"/>
            <exon e_start="71821" e_stop="71735"/>
            <exon e_start="70857" e_stop="70741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.875" e_score="0.950"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="0.966"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="73666" e_stop="73647" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.875">
            <gDNA_intron_boundary i_start="73646" i_stop="72900" i_length="747"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="72899" e_stop="72582" e_length="318"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72581" i_stop="72051" i_length="531"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="72050" e_stop="71949" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="71948" i_stop="71822" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="71821" e_stop="71735" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="71734" i_stop="70858" i_length="877"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="70857" e_stop="70741" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73666" stop="73647"/>
              <exon start="72899" stop="72582"/>
              <exon start="72050" stop="71949"/>
              <exon start="71821" stop="71735"/>
              <exon start="70857" stop="70741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGCGGTGAAGTTTTGCTG : GTATTGATTATAGTAAAACACATGGGATTGCCGAGATTTAAACGTCCTGTAGGGACTAGCGAACCAAGTTCAAATCTTTATGTGGCCAATTGTGGACCTGCAGTTGGACTAACTTTGGACACAATTGAAGCCGTATTTGGTGCATATGGTCAAGTTAAGGGAGTCCATCTCGCTGATGAAAGTGGCACTAGAGTTATTGTGTCTTATCATGAAGAAAAGTCTGCAGAATCTGCCCTGACGGCGTTGAATAGACGAGCATGTCCTGAGCTTGGTGGCCGGTCTTTGCACATTCAGTATTCAGTACCTTCTGTTTGTCAG : GTTGCAGTGGATGACTCAATTGAGGTGTCGATGGAATCTTCAGAGTTAGATATTCCTGGTCTTTACTTGATTCATGACTTCATCAGTGTCAAAGAGGAGGAG : GAACTACTTGCAGCAGTTGATTCAAGGCCTTGGCAAAGACTTGCTAAAAGAAGGGTGCAGCATTATGGTTATGAGTTCCACTATAAT : ACGAGGAATGTCAACACAAATCAGTACTTGGGTGAACTTCCATCATTTCTTTCGCCAATACTTGACAAGATGTCAATGTTTCAAAAGCTTGGTTACACTGAAACCGTAGTTATGGAC</gDNA_template>
            <first_frame> P  A  V  K  F  C  W :   Y  *  L  *  *  N  T  W  D  C  R  D  L  N  V  L  *  G  L  A  N  Q  V  Q  I  F  M  W  P  I  V  D  L  Q  L  D  *  L  W  T  Q  L  K  P  Y  L  V  H  M  V  K  L  R  E  S  I  S  L  M  K  V  A  L  E  L  L  C  L  I  M  K  K  S  L  Q  N  L  P  *  R  R  *  I  D  E  H  V  L  S  L  V  A  G  L  C  T  F  S  I  Q  Y  L  L  F  V  R :   L  Q  W  M  T  Q  L  R  C  R  W  N  L  Q  S  *  I  F  L  V  F  T  *  F  M  T  S  S  V  S  K  R  R  R :   N  Y  L  Q  Q  L  I  Q  G  L  G  K  D  L  L  K  E  G  C  S  I  M  V  M  S  S  T  I  I :   R  G  M  S  T  Q  I  S  T  W  V  N  F  H  H  F  F  R  Q  Y  L  T  R  C  Q  C  F  K  S  L  V  T  L  K  P  *  L  W   </first_frame>
            <second_frame>  R  R  *  S  F  A   : G  I  D  Y  S  K  T  H  G  I  A  E  I  *  T  S  C  R  D  *  R  T  K  F  K  S  L  C  G  Q  L  W  T  C  S  W  T  N  F  G  H  N  *  S  R  I  W  C  I  W  S  S  *  G  S  P  S  R  *  *  K  W  H  *  S  Y  C  V  L  S  *  R  K  V  C  R  I  C  P  D  G  V  E  *  T  S  M  S  *  A  W  W  P  V  F  A  H  S  V  F  S  T  F  C  L  S   : G  C  S  G  *  L  N  *  G  V  D  G  I  F  R  V  R  Y  S  W  S  L  L  D  S  *  L  H  Q  C  Q  R  G  G   : G  T  T  C  S  S  *  F  K  A  L  A  K  T  C  *  K  K  G  A  A  L  W  L  *  V  P  L  *   : Y  E  E  C  Q  H  K  S  V  L  G  *  T  S  I  I  S  F  A  N  T  *  Q  D  V  N  V  S  K  A  W  L  H  *  N  R  S  Y  G  </second_frame>
            <third_frame>   G  G  E  V  L  L  :  V  L  I  I  V  K  H  M  G  L  P  R  F  K  R  P  V  G  T  S  E  P  S  S  N  L  Y  V  A  N  C  G  P  A  V  G  L  T  L  D  T  I  E  A  V  F  G  A  Y  G  Q  V  K  G  V  H  L  A  D  E  S  G  T  R  V  I  V  S  Y  H  E  E  K  S  A  E  S  A  L  T  A  L  N  R  R  A  C  P  E  L  G  G  R  S  L  H  I  Q  Y  S  V  P  S  V  C  Q  :  V  A  V  D  D  S  I  E  V  S  M  E  S  S  E  L  D  I  P  G  L  Y  L  I  H  D  F  I  S  V  K  E  E  E  :  E  L  L  A  A  V  D  S  R  P  W  Q  R  L  A  K  R  R  V  Q  H  Y  G  Y  E  F  H  Y  N  :  T  R  N  V  N  T  N  Q  Y  L  G  E  L  P  S  F  L  S  P  I  L  D  K  M  S  M  F  Q  K  L  G  Y  T  E  T  V  V  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73664" stop="73647"/>
                    <exon start="72899" stop="72582"/>
                    <exon start="72050" stop="71949"/>
                    <exon start="71821" stop="71735"/>
                    <exon start="70857" stop="70741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGEVLLVLIIVKHMGLPRFKRPVGTSEPSSNLYVANCGPAVGLTLDTIEAVFGAYGQVKGVHLADESGTRVIVSYHEEKSAESALTALNRRACPELGGRSLHIQYSVPSVCQVAVDDSIEVSMESSELDIPGLYLIHDFISVKEEEELLAAVDSRPWQRLAKRRVQHYGYEFHYNTRNVNTNQYLGELPSFLSPILDKMSMFQKLGYTETVVMD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="106801" PGL_stop="103561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106801" e_stop="106670"/>
            <exon e_start="105757" e_stop="105424"/>
            <exon e_start="105350" e_stop="105134"/>
            <exon e_start="105057" e_stop="104520"/>
            <exon e_start="104440" e_stop="104342"/>
            <exon e_start="104120" e_stop="103561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.318" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.970" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106801" e_stop="106670" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="106669" i_stop="105758" i_length="912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105757" e_stop="105424" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.933">
            <gDNA_intron_boundary i_start="105423" i_stop="105351" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105350" e_stop="105134" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.318" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105133" i_stop="105058" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="105057" e_stop="104520" e_length="538"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.970">
            <gDNA_intron_boundary i_start="104519" i_stop="104441" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104440" e_stop="104342" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="104341" i_stop="104121" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104120" e_stop="103561" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106801" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106714" stop="106670"/>
              <exon start="105757" stop="105424"/>
              <exon start="105350" stop="105134"/>
              <exon start="105057" stop="104520"/>
              <exon start="104440" stop="104349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8896-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104595" stop="104520"/>
              <exon start="104440" stop="104342"/>
              <exon start="104120" stop="103708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG : GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG : AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG : GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTTAAGGGGAGAATTAACCCTCTTATTAGAGCGGTTGAACCTACAGCTTGCCCCTCGTTGACGAAAGGTGTGTATGCTTACGACTATGGAGACACCGCAGGCATGACTCCTTTAATGAAAATGCATACACTTGGTCATGACTTCATACCGGATCCCATCCATTCCG : GGGGTCTCCGTTACCACGGCATGGCACCACTGATATCACACGTCTATGAACTCGGATTCATGGAAGCAATATCAATTCCGCAGATTGAATGTTTCCAAG : GTGCTATTCAGTTTGCGAGGTCTGAGGGGTTGATACCAGCACCAGAACCAACGCATGCTATAGCCGCTACTATAAGGGAAGCTCTAAGATGTAAAGAGACCGGAGAATCGAAAGTTATACTCATGGCAATGTGTGGACATGGACATTTTGATTTGTCATCTTACGATAAGTATTTGCAGGGAAGCATGGTTGATTTGTCCTTCTCAGAAGAGAAAATAAAAGCCTCACTCGCGAAGATACCACAACCAGTATCATAAGTTGATCCAAGTCGAGGAGACGATGAAAATAGGAGGTACGTAGTGGAATTTGGTTTGTACTTTTCTCCACGAATAATGTTTTCGTAGTTCTGCCAAGTTGAAGAATAACATGCCCCCAACCCCCTCAATCTTTTGATCGAATAATATTCGATACAATTAGTTGTAGCTTTGTAAGTTGTTGTGTGGCCTTCAACTTTTCGAGTTGTGTGTAATCATCTATATGATTGACTTGACAACAATGAAGGATCTGGGAGTGGCATTTCATCATTTTGTGCTAAGTTTTGTCGATTTTTTTAATAAAAA</gDNA_template>
            <first_frame> K  R  K  K  C  *  T  D  I  F  C  L  L  F  L  V  V  *  *  C  F  N  I  Q  F  S  T  S  K  S  V  *  K  W  Q  Y  P  S  Q  I  C  F  Q  K  :  V  M  R  M  E  Q  S  I  S  R  L  K  Q  S  Q  V  N  *  S  F  R  L  A  I  E  Q  E  Q  R  Q  L  L  I  L  V  R  V  L  L  K  S  L  G  S  G  T  I  *  L  Q  T  F  Q  S  N  H  L  H  R  C  I  P  R  R  F  S  L  S  N  R  R  T  Y  L  R  F  S  V  M  S  *  L  S  R  R  Q  A  S  T  S  L  L  I  Y  R  K  K  F  *  T  S  T  V  F  G  A  Q  P  L  *  L   : E  Q  R  G  W  K  N  C  L  I  H  P  H  E  Y  I  T  S  M  K  V  V  A  P  R  G  R  T  S  P  T  L  L  F  L  R  P  G  T  I  K  W  G  M  L  K  M  W  L  R  R  P  G  Q  V  N  G  G  A  R  C  R  L  L  A  A  Y  L  V  S  I  V  R :   Y  G  K  F  E  L  R  L  I  R  N  L  I  V  R  *  *  C  K  L  G  V  R  R  C  I  L  L  L  P  T  L  Q  R  P  V  G  L  F  Y  K  W  I  L  Q  V  Q  E  V  *  E  *  L  F  Q  R  L  W  R  L  Q  R  R  T  L  T  P  S  I  V  W  E  V  F  *  I  M  F  C  Y  I  R  P  L  S  V  R  S  V  *  N  R  W  R  I  S  E  R  L  Q  M  *  S  S  V  A  R  E  V  D  L  I  L  Q  D  L  L  S  R  L  S  G  R  S  L  R  G  E  L  T  L  L  L  E  R  L  N  L  Q  L  A  P  R  *  R  K  V  C  M  L  T  T  M  E  T  P  Q  A  *  L  L  *  *  K  C  I  H  L  V  M  T  S  Y  R  I  P  S  I  P  :  G  V  S  V  T  T  A  W  H  H  *  Y  H  T  S  M  N  S  D  S  W  K  Q  Y  Q  F  R  R  L  N  V  S  K  :  V  L  F  S  L  R  G  L  R  G  *  Y  Q  H  Q  N  Q  R  M  L  *  P  L  L  *  G  K  L  *  D  V  K  R  P  E  N  R  K  L  Y  S  W  Q  C  V  D  M  D  I  L  I  C  H  L  T  I  S  I  C  R  E  A  W  L  I  C  P  S  Q  K  R  K  *  K  P  H  S  R  R  Y  H  N  Q  Y  H  K  L  I  Q  V  E  E  T  M  K  I  G  G  T  *  W  N  L  V  C  T  F  L  H  E  *  C  F  R  S  S  A  K  L  K  N  N  M  P  P  T  P  S  I  F  *  S  N  N  I  R  Y  N  *  L  *  L  C  K  L  L  C  G  L  Q  L  F  E  L  C  V  I  I  Y  M  I  D  L  T  T  M  K  D  L  G  V  A  F  H  H  F  V  L  S  F  V  D  F  F  N  K   </first_frame>
            <second_frame>  K  E  K  N  V  R  L  T  F  F  V  F  Y  F  *  *  C  S  S  V  S  I  S  N  F  Q  Q  A  N  Q  C  R  N  G  S  I  P  P  K  S  V  S  K  R :   *  C  V  W  N  K  V  F  R  D  *  N  K  A  K  S  I  E  A  F  V  *  L  *  S  K  S  K  G  S  S  *  S  S  F  E  F  C  *  N  P  S  A  V  V  Q  S  S  C  R  P  S  N  Q  T  T  S  T  V  A  S  Q  D  V  S  A  Y  Q  T  G  G  L  I  S  A  F  L  *  *  V  D  *  A  G  G  K  H  R  P  V  Y  *  Y  T  G  R  S  F  R  R  L  Q  S  L  A  P  N  P  F  D  *  :  S  K  E  V  G  K  T  A  *  Y  T  R  T  N  I  L  Q  V  *  R  W  *  P  R  G  V  A  Q  A  Q  L  C  C  S  S  G  L  V  Q  *  N  G  E  C  *  K  C  G  Y  G  D  R  G  R  S  M  G  E  R  V  V  V  C  L  Q  L  I  W  S  Q  L  *   : G  M  A  S  S  S  F  V  *  S  E  T  L  S  *  D  D  D  A  N  L  G  C  E  G  A  S  F  S  F  R  P  Y  R  G  R  S  G  Y  S  T  N  G  S  F  K  S  R  K  F  R  N  S  Y  F  R  G  C  G  G  C  S  E  E  R  *  H  Q  V  L  F  G  K  C  S  E  S  C  F  V  T  S  D  R  Y  R  *  G  V  Y  K  T  D  G  G  F  R  R  D  S  R  C  D  H  R  L  H  G  R  W  I  *  F  C  R  T  C  F  P  V  Y  P  G  E  A  *  G  E  N  *  P  S  Y  *  S  G  *  T  Y  S  L  P  L  V  D  E  R  C  V  C  L  R  L  W  R  H  R  R  H  D  S  F  N  E  N  A  Y  T  W  S  *  L  H  T  G  S  H  P  F  R :   G  S  P  L  P  R  H  G  T  T  D  I  T  R  L  *  T  R  I  H  G  S  N  I  N  S  A  D  *  M  F  P  R :   C  Y  S  V  C  E  V  *  G  V  D  T  S  T  R  T  N  A  C  Y  S  R  Y  Y  K  G  S  S  K  M  *  R  D  R  R  I  E  S  Y  T  H  G  N  V  W  T  W  T  F  *  F  V  I  L  R  *  V  F  A  G  K  H  G  *  F  V  L  L  R  R  E  N  K  S  L  T  R  E  D  T  T  T  S  I  I  S  *  S  K  S  R  R  R  *  K  *  E  V  R  S  G  I  W  F  V  L  F  S  T  N  N  V  F  V  V  L  P  S  *  R  I  T  C  P  Q  P  P  Q  S  F  D  R  I  I  F  D  T  I  S  C  S  F  V  S  C  C  V  A  F  N  F  S  S  C  V  *  S  S  I  *  L  T  *  Q  Q  *  R  I  W  E  W  H  F  I  I  L  C  *  V  L  S  I  F  L  I  K  </second_frame>
            <third_frame>   K  K  K  M  L  D  *  H  F  L  S  S  I  F  S  S  V  V  V  F  Q  Y  P  I  F  N  K  Q  I  S  V  E  M  A  V  S  L  P  N  L  F  P  K   : G  D  A  Y  G  T  K  Y  F  E  I  K  T  K  P  S  Q  L  K  L  S  F  S  Y  R  A  R  A  K  A  A  L  N  P  R  S  S  S  V  E  I  P  R  Q  W  Y  N  L  V  A  D  L  P  I  K  P  P  P  P  L  H  P  K  T  F  Q  P  I  K  P  E  D  L  S  P  L  F  C  D  E  L  I  K  Q  E  A  S  I  D  Q  F  I  D  I  P  E  E  V  L  D  V  Y  S  L  W  R  P  T  P  L  I  R :   A  K  R  L  E  K  L  L  D  T  P  A  R  I  Y  Y  K  Y  E  G  G  S  P  A  G  S  H  K  P  N  S  A  V  P  Q  A  W  Y  N  K  M  G  N  V  K  N  V  V  T  E  T  G  A  G  Q  W  G  S  A  L  S  F  A  C  S  L  F  G  L  N  C  E  :  V  W  Q  V  R  A  S  F  D  Q  K  P  Y  R  K  M  M  M  Q  T  W  G  A  K  V  H  P  S  P  S  D  L  T  E  A  G  R  A  I  L  Q  M  D  P  S  S  P  G  S  L  G  I  A  I  S  E  A  V  E  V  A  A  K  N  A  D  T  K  Y  C  L  G  S  V  L  N  H  V  L  L  H  Q  T  V  I  G  E  E  C  I  K  Q  M  E  D  F  G  E  T  P  D  V  I  I  G  C  T  G  G  G  S  N  F  A  G  L  A  F  P  F  I  R  E  K  L  K  G  R  I  N  P  L  I  R  A  V  E  P  T  A  C  P  S  L  T  K  G  V  Y  A  Y  D  Y  G  D  T  A  G  M  T  P  L  M  K  M  H  T  L  G  H  D  F  I  P  D  P  I  H  S   : G  G  L  R  Y  H  G  M  A  P  L  I  S  H  V  Y  E  L  G  F  M  E  A  I  S  I  P  Q  I  E  C  F  Q   : G  A  I  Q  F  A  R  S  E  G  L  I  P  A  P  E  P  T  H  A  I  A  A  T  I  R  E  A  L  R  C  K  E  T  G  E  S  K  V  I  L  M  A  M  C  G  H  G  H  F  D  L  S  S  Y  D  K  Y  L  Q  G  S  M  V  D  L  S  F  S  E  E  K  I  K  A  S  L  A  K  I  P  Q  P  V  S  *  V  D  P  S  R  G  D  D  E  N  R  R  Y  V  V  E  F  G  L  Y  F  S  P  R  I  M  F  S  *  F  C  Q  V  E  E  *  H  A  P  N  P  L  N  L  L  I  E  *  Y  S  I  Q  L  V  V  A  L  *  V  V  V  W  P  S  T  F  R  V  V  C  N  H  L  Y  D  *  L  D  N  N  E  G  S  G  S  G  I  S  S  F  C  A  K  F  C  R  F  F  *  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0067C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106778" stop="106670"/>
                    <exon start="105757" stop="105424"/>
                    <exon start="105350" stop="105134"/>
                    <exon start="105057" stop="104520"/>
                    <exon start="104440" stop="104342"/>
                    <exon start="104120" stop="103864"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFLSSIFSSVVVFQYPIFNKQISVEMAVSLPNLFPKGDAYGTKYFEIKTKPSQLKLSFSYRARAKAALNPRSSSVEIPRQWYNLVADLPIKPPPPLHPKTFQPIKPEDLSPLFCDELIKQEASIDQFIDIPEEVLDVYSLWRPTPLIRAKRLEKLLDTPARIYYKYEGGSPAGSHKPNSAVPQAWYNKMGNVKNVVTETGAGQWGSALSFACSLFGLNCEVWQVRASFDQKPYRKMMMQTWGAKVHPSPSDLTEAGRAILQMDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQTVIGEECIKQMEDFGETPDVIIGCTGGGSNFAGLAFPFIREKLKGRINPLIRAVEPTACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHSGGLRYHGMAPLISHVYELGFMEAISIPQIECFQGAIQFARSEGLIPAPEPTHAIAATIREALRCKETGESKVILMAMCGHGHFDLSSYDKYLQGSMVDLSFSEEKIKASLAKIPQPVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 11400 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 8360 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2786 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:32:04
-->
