##gff-version 3
##sequence-region C12HBa0029E19.1 1 102535
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	2519	4790	0.989	+	0	ID=SGN-U603491_alignment_1;Target=SGN-U603491 1 727 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	2519	2578	0.983	+	0	ID=GTH_SGN_U_tom_match_part_1;Target=SGN-U603491 1 60 +;Parent=SGN-U603491_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	2877	3014	1.000	+	0	ID=GTH_SGN_U_tom_match_part_2;Target=SGN-U603491 61 198 +;Parent=SGN-U603491_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	4120	4623	0.986	+	0	ID=GTH_SGN_U_tom_match_part_3;Target=SGN-U603491 199 700 +;Parent=SGN-U603491_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	4764	4790	0.889	+	0	ID=GTH_SGN_U_tom_match_part_4;Target=SGN-U603491 701 727 +;Parent=SGN-U603491_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	18045	19215	0.943	-	0	ID=SGN-U594454_alignment_1;Target=SGN-U594454 1 422 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	19197	19215	1.000	-	0	ID=GTH_SGN_U_tom_match_part_5;Target=SGN-U594454 1 19 +;Parent=SGN-U594454_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	18045	18446	0.943	-	0	ID=GTH_SGN_U_tom_match_part_6;Target=SGN-U594454 20 422 +;Parent=SGN-U594454_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	22494	28294	0.996	+	0	ID=SGN-U585861_alignment_1;Target=SGN-U585861 1 1098 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	22494	22577	1.000	+	0	ID=GTH_SGN_U_tom_match_part_7;Target=SGN-U585861 1 84 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	23824	24028	1.000	+	0	ID=GTH_SGN_U_tom_match_part_8;Target=SGN-U585861 85 289 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	25629	25717	1.000	+	0	ID=GTH_SGN_U_tom_match_part_9;Target=SGN-U585861 290 378 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	25807	25902	1.000	+	0	ID=GTH_SGN_U_tom_match_part_10;Target=SGN-U585861 379 474 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	26909	27002	1.000	+	0	ID=GTH_SGN_U_tom_match_part_11;Target=SGN-U585861 475 568 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	27317	27645	1.000	+	0	ID=GTH_SGN_U_tom_match_part_12;Target=SGN-U585861 569 897 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	28093	28294	0.980	+	0	ID=GTH_SGN_U_tom_match_part_13;Target=SGN-U585861 898 1098 +;Parent=SGN-U585861_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	31014	31616	0.998	-	0	ID=SGN-U587037_alignment_1;Target=SGN-U587037 1 603 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	31014	31616	0.998	-	0	ID=GTH_SGN_U_tom_match_part_14;Target=SGN-U587037 1 603 +;Parent=SGN-U587037_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	31085	31610	1.000	-	0	ID=SGN-U575233_alignment_1;Target=SGN-U575233 1 526 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	31085	31610	1.000	-	0	ID=GTH_SGN_U_tom_match_part_15;Target=SGN-U575233 1 526 +;Parent=SGN-U575233_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	37666	38489	0.983	+	0	ID=SGN-U564620_alignment_1;Target=SGN-U564620 1 823 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	37666	38489	0.983	+	0	ID=GTH_SGN_U_tom_match_part_16;Target=SGN-U564620 1 823 +;Parent=SGN-U564620_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	62822	62967	0.904	+	0	ID=SGN-U586406_alignment_1;Target=SGN-U586406 1 144 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	62822	62967	0.904	+	0	ID=GTH_SGN_U_tom_match_part_17;Target=SGN-U586406 1 144 +;Parent=SGN-U586406_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	64522	65288	0.917	+	0	ID=SGN-U601211_alignment_1;Target=SGN-U601211 1 764 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	64522	65288	0.917	+	0	ID=GTH_SGN_U_tom_match_part_18;Target=SGN-U601211 1 764 +;Parent=SGN-U601211_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	69407	69911	0.929	+	0	ID=SGN-U603933_alignment_1;Target=SGN-U603933 1 505 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	69407	69911	0.929	+	0	ID=GTH_SGN_U_tom_match_part_19;Target=SGN-U603933 1 505 +;Parent=SGN-U603933_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	72588	76104	0.994	-	0	ID=SGN-U581448_alignment_1;Target=SGN-U581448 1 893 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	75801	76104	0.993	-	0	ID=GTH_SGN_U_tom_match_part_20;Target=SGN-U581448 1 305 +;Parent=SGN-U581448_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	72588	73174	0.995	-	0	ID=GTH_SGN_U_tom_match_part_21;Target=SGN-U581448 306 893 +;Parent=SGN-U581448_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	76154	77933	0.989	-	0	ID=SGN-U566218_alignment_1;Target=SGN-U566218 36 742 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	77839	77933	0.979	-	0	ID=GTH_SGN_U_tom_match_part_22;Target=SGN-U566218 36 130 +;Parent=SGN-U566218_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	76154	76763	0.990	-	0	ID=GTH_SGN_U_tom_match_part_23;Target=SGN-U566218 131 742 +;Parent=SGN-U566218_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	80133	80965	0.936	-	0	ID=SGN-U595895_alignment_1;Target=SGN-U595895 1 736 -
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	80692	80965	0.891	-	0	ID=GTH_SGN_U_tom_match_part_24;Target=SGN-U595895 1 260 -;Parent=SGN-U595895_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	80133	80610	0.962	-	0	ID=GTH_SGN_U_tom_match_part_25;Target=SGN-U595895 261 736 -;Parent=SGN-U595895_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match	81892	82598	0.919	+	0	ID=SGN-U591120_alignment_1;Target=SGN-U591120 1 461 +
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	81892	82335	0.919	+	0	ID=GTH_SGN_U_tom_match_part_26;Target=SGN-U591120 1 442 +;Parent=SGN-U591120_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	match_part	82579	82598	0.750	+	0	ID=GTH_SGN_U_tom_match_part_27;Target=SGN-U591120 443 461 +;Parent=SGN-U591120_alignment_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	2519	4790	.	+	0	ID=GTH_SGN_U_tom_gene_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	2519	4790	.	+	0	ID=GTH_SGN_U_tom_gene_1_AGS_1;Parent=GTH_SGN_U_tom_gene_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	2519	2578	0.983	+	0	ID=GTH_SGN_U_tom_exon_1;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	2877	3014	1.000	+	0	ID=GTH_SGN_U_tom_exon_2;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	4120	4623	0.986	+	0	ID=GTH_SGN_U_tom_exon_3;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	4764	4790	0.889	+	0	ID=GTH_SGN_U_tom_exon_4;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	18045	19215	.	-	0	ID=GTH_SGN_U_tom_gene_2
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	18045	19215	.	-	0	ID=GTH_SGN_U_tom_gene_2_AGS_1;Parent=GTH_SGN_U_tom_gene_2
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	19197	19215	1.000	-	0	ID=GTH_SGN_U_tom_exon_5;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	18045	18446	0.943	-	0	ID=GTH_SGN_U_tom_exon_6;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	22494	28294	.	+	0	ID=GTH_SGN_U_tom_gene_3
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	22494	28294	.	+	0	ID=GTH_SGN_U_tom_gene_3_AGS_1;Parent=GTH_SGN_U_tom_gene_3
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	22494	22577	1.000	+	0	ID=GTH_SGN_U_tom_exon_7;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	23824	24028	1.000	+	0	ID=GTH_SGN_U_tom_exon_8;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	25629	25717	1.000	+	0	ID=GTH_SGN_U_tom_exon_9;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	25807	25902	1.000	+	0	ID=GTH_SGN_U_tom_exon_10;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	26909	27002	1.000	+	0	ID=GTH_SGN_U_tom_exon_11;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	27317	27645	1.000	+	0	ID=GTH_SGN_U_tom_exon_12;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	28093	28294	0.980	+	0	ID=GTH_SGN_U_tom_exon_13;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	31014	31616	.	-	0	ID=GTH_SGN_U_tom_gene_4
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	31014	31616	.	-	0	ID=GTH_SGN_U_tom_gene_4_AGS_1;Parent=GTH_SGN_U_tom_gene_4
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	31014	31616	0.998	-	0	ID=GTH_SGN_U_tom_exon_14;Parent=GTH_SGN_U_tom_gene_4_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	37666	38489	.	+	0	ID=GTH_SGN_U_tom_gene_5
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	37666	38489	.	+	0	ID=GTH_SGN_U_tom_gene_5_AGS_1;Parent=GTH_SGN_U_tom_gene_5
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	37666	38489	0.983	+	0	ID=GTH_SGN_U_tom_exon_15;Parent=GTH_SGN_U_tom_gene_5_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	62822	62967	.	+	0	ID=GTH_SGN_U_tom_gene_6
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	62822	62967	.	+	0	ID=GTH_SGN_U_tom_gene_6_AGS_1;Parent=GTH_SGN_U_tom_gene_6
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	62822	62967	0.904	+	0	ID=GTH_SGN_U_tom_exon_16;Parent=GTH_SGN_U_tom_gene_6_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	64522	65288	.	+	0	ID=GTH_SGN_U_tom_gene_7
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	64522	65288	.	+	0	ID=GTH_SGN_U_tom_gene_7_AGS_1;Parent=GTH_SGN_U_tom_gene_7
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	64522	65288	0.917	+	0	ID=GTH_SGN_U_tom_exon_17;Parent=GTH_SGN_U_tom_gene_7_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	69407	69911	.	+	0	ID=GTH_SGN_U_tom_gene_8
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	69407	69911	.	+	0	ID=GTH_SGN_U_tom_gene_8_AGS_1;Parent=GTH_SGN_U_tom_gene_8
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	69407	69911	0.929	+	0	ID=GTH_SGN_U_tom_exon_18;Parent=GTH_SGN_U_tom_gene_8_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	72588	76104	.	-	0	ID=GTH_SGN_U_tom_gene_9
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	72588	76104	.	-	0	ID=GTH_SGN_U_tom_gene_9_AGS_1;Parent=GTH_SGN_U_tom_gene_9
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	75801	76104	0.993	-	0	ID=GTH_SGN_U_tom_exon_19;Parent=GTH_SGN_U_tom_gene_9_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	72588	73174	0.995	-	0	ID=GTH_SGN_U_tom_exon_20;Parent=GTH_SGN_U_tom_gene_9_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	76154	77933	.	-	0	ID=GTH_SGN_U_tom_gene_10
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	76154	77933	.	-	0	ID=GTH_SGN_U_tom_gene_10_AGS_1;Parent=GTH_SGN_U_tom_gene_10
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	77839	77933	0.979	-	0	ID=GTH_SGN_U_tom_exon_21;Parent=GTH_SGN_U_tom_gene_10_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	76154	76763	0.990	-	0	ID=GTH_SGN_U_tom_exon_22;Parent=GTH_SGN_U_tom_gene_10_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	80133	80965	.	-	0	ID=GTH_SGN_U_tom_gene_11
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	80133	80965	.	-	0	ID=GTH_SGN_U_tom_gene_11_AGS_1;Parent=GTH_SGN_U_tom_gene_11
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	80692	80965	0.891	-	0	ID=GTH_SGN_U_tom_exon_23;Parent=GTH_SGN_U_tom_gene_11_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	80133	80610	0.962	-	0	ID=GTH_SGN_U_tom_exon_24;Parent=GTH_SGN_U_tom_gene_11_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	gene	81892	82598	.	+	0	ID=GTH_SGN_U_tom_gene_12
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	mRNA	81892	82598	.	+	0	ID=GTH_SGN_U_tom_gene_12_AGS_1;Parent=GTH_SGN_U_tom_gene_12
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	81892	82335	0.919	+	0	ID=GTH_SGN_U_tom_exon_25;Parent=GTH_SGN_U_tom_gene_12_AGS_1
C12HBa0029E19.1	GenomeThreader_SGN_U_tomato	exon	82579	82598	0.750	+	0	ID=GTH_SGN_U_tom_exon_26;Parent=GTH_SGN_U_tom_gene_12_AGS_1