<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:21:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7056-2" ref_strand="+" ref_description="SGN-M7056-2 C2_At1g75340-2 [cosii_markers]">
      <seq>gggctgcaggaattcggcacgaggtctaaaaaagaggacttaacgctatgcgggcaaggaaagaaccctgcaggaggtttatgcggggcagctgtcaatatggtgaacgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttgggtttggcagccaatcctctaattttcagaatacgaatatgcagcagacaaagtccaaccctttcggttttggtgttcagagcaactcccagccaagagggtccagtgatttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgctctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccatgtgatattattggtgatgttagctatgaagagctgcgagcagcagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagaagagagaggagcctggttaattctaaagtagctgaatttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="22208" stop="27666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22514" g_stop="22577" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="91" r_length="64" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23824" g_stop="24028" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="296" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="385" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="481" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="575" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27317" g_stop="27366" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="626" r_length="51" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-M7056-2" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7056-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22514" e_stop="22577"/>
          <exon e_start="23824" e_stop="24028"/>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAGGTAAAAATAACTAAAAAATTGGTTTTAATTTCAATCTATATACTTTATTATGCATATATTCATAGGATTCTTGATTAACCCTTGAAACTTTCATGTCAAAGATTCAATTTTTATTTAGTATTATTCTTTTGCTAATCGATATAAAGGTGTAGAGTTGAGTAAAAATAGTTTCTTTGAGCATTTTATTGGGTGGGGATGGGGGTGAAGTTGTTTAGGATTGATGGGAAGTTGGTTGATTGATTGTTGTACTTAATATTTATTATAATGGTTGAAATATCCCAGCTAAGTAAAGTTATGAGCTTTAGCATCAAAGGGTGTTGTAGATGGTTAATGAAGTGGGTTGTAAATCATGATGTCGCTAGTTTAAATCCCAATGTAGGTAGAAACACTTGGTGATTTCTTAAAATTTGTCCAGGTCTGGTGGATAGAGTTATCTGGTATGGCCGGGGTGGGGGATGAATTTAGAAAATTCATATTGCCTTAGTGGTTTAGGATTGATGGGAAGTTGGTTGCTTGATTGTTGTATTCAATCTTTATGGTAATGGTTGAAAGATCTTAGCTAAGTAAAGTCATGAGCTTTAGGGTCAAAGGGTGTGGCCGGTGGATAATAAAGAGGGTTGAGAATCATGATGTCTCATGTTCAAATCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTATGATGTCTCATGTTCAAGTCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTACTTTTCTTGTTATTTTGTTTCAAAAAGAATGTCTCTTTCCTTTTTCTGGGAACTCATCAAGAATGAATGTTAAGCATGCCTCTTATTTACATTAGTGTGGGATAACAGGGACCTACCAAAAGGTTAAATGAAGGGGGGACAGATCCCCGGTTGAACCTTTTTTATTTTTTCATATATCTGGATATATAAAGCTAGGTTGGGAAGTGAACTCGCGGGAGGTAGGGGGTTGTGTTTCCTTTTCAAATTACATAATATTGACCTAAGATCGAATAATAATTGGTATGATATTCCATCTAGAACTTAGAAAGGTGGTGTTTTTGCTGTGATGTCTTAGAAAGTAAAAATGATGTCTTTAACTTGAAACATAAAAATTCTTAATTTAATTAGTAGTTCTTTATGAGAGTTGAGTAATCCTTGTTATGAATAGGTTCCTTTGTTTGAGTATGAAAAATAGGATCTGATTGTTGTCTTATTCATCCAGCTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAGGTACTTTAGCTGTTACTCTCTAATTATAGCTGTTTGCTGCAGATTATTTAGCATTTATTATATTTATTATAAATAATATGCTTCCTCAGTACCATTTTTGAGGAGTCCTCTCTCCATATTTTCAATTTTACCTGCTAATACATGCCAAGCGATAATGGCTCTCTAGATATTTTAATCCTAGACACTAGAATTCATATCATTCTTTATCTTCATGTCTCAACAAGTGTTAACATGTTGTAAGTGCTCAATGGTATTATCTTAAGAGTTGAAGAAACGGTGGTGAGTCATAAAGATAAAGAATTGGAAGTAAGAAATTTAGAAATGTCCCATGGGTATGGCCTAGTCCCCAATGAAGTGGGTTGAGAACCATGAGGTCTCATGTTCAAAGCCCAACGAAGCCATCCTACTCCAAAAAATTGAAACGTCACCTGTAGATCTTGACGTCACCCACTCTAGTCCCAAAATACTGAAGAACATCTGCCAAACTTAAAATCAGACTGAACAGTGTAATAATAGAGGATTCATTTGTTCCAGAATTCTCTCAACTCATGTAGCATCTATTACTTAGATAAAAGCCACTTCTTTGCAAGTTGTTTTCGCTAAGGCAAGCTTCTTCCTCCGTTTCTTTTTTTGAAATGGTAACACAAACTTCTTTGTTCAACAACCATACAAAACACGTAACCAAGTGGGGGCTTTTGATTTCCAAACTTATTTCCTATGAACCTTCAGAATTACAAGGGTTTGTCCTGTTAGAACATTGTAACAAGACTTCAAAGTGAACTTCCCATTCATATTTCCTTTCCGTTCCAATCTGCCATTGCTGCTATTTAAGCCTTGAAAGTTATATGAACCATTGAAAATTCAGTCATGTCAGGCCTTACATTTTCTTAAATATGTGTTAATAAGAATGTAGCTGTTGTGGGGTTTACATATAGAGAAGGAACAGGATTTTGGTTGACAACATACGAGTCCTTCTCGTTAATTGAAAAAGAAGTTTCAATAGCAAGACTGCTACGAAATTTTATATGCTATCTGAAGTTTCATCTTTACAAGGCCATCTTTTAATTTCAGCGAACAAAATAATGGCACTGATGCTTTCTTCATACTAAAAAGTCACATGAATCTTAAGGAAAGGTTGATAAAGGGAAACATATGGAGTTAAATATTTTATAATAAGTTTGTGGAGTCCAATACTTACTGTTTTGTATTTGTGGTTATTAAAATTTTCCAATGTACATACTGTTGTCACCAACAGCAGTTTACTGGTGAGTCAATATTTACGTATGGTCCTTGTAACTTTCAGTATTATTTCTTTATCAGATCAGTGACATATTCATGTAATACAACTATGATTGTGGACTTTTGCATGAGTATGTGTAGGTTCGATTCTATCCTGTTTTCTAGATGTTATGAAGAACTAAAATGAATTGATAGGTTTTTATCAAAAAAAAAAAAAAAAATGAATTGATAGGTTTTATGACAATGTAAAAGTCTAGGTGACCTAGAAGTAAACTCTCCCAGGATTGAGTCATCTGGTTTATCCTGAATAAACTCTTATCAGGTCTTCATATGCATACTAACTTCTTTTTTTCATTTTTAGCCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAG-AGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAA</genome_strand>
        <mrna_strand>AAAAAAGAGGACTTAACGCTATGCGGGCAAGGAAAGAACCCTGCAGGAGGTTTATGCGGGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGGTTTGGCAGCCAATCCTCTAATTTTCAGAATACGAATATGCAGCAGACAAAGTCCAACCCTTTCGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGGTCCAGTGATTTGGGGCTCAAACAGAATCAATACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGAAAACAAGTGGACTCGCTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCATGTGATATTATTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGCAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAAGAGAGAGGAGCCTGGTTAATTCTAAAGTAGCTGAATTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7056" ref_strand="+" ref_description="SGN-M7056 C2_At1g75340 [cosii_markers]">
      <seq>aaaaaggacttaactctatgcctccaaggaaagaaccctgcagaaattttatgcgtggcagctgtcaatatggtgaacgttgtaaatttcttcatgctgcccaacaacaaccgaagccaaatccatttggatttggcagtcaatccactaattttcagagtacaaatatgcagcagacaaagtccaacccttttggttttggtgttcagagcaactcccagccaagaggttctagtgatttggggctcaaacagaatcaatacaagccttttgaaaacaagtggactcgttctgcaactaccaacagttcttcatcgcggcaaaccgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgcagacgccagattgtggaagattttaataatgagaagccattgtggctgcttacctgctatggtcatcgtaaaaatggtccttgtgatattactggtgatgttagctatgaagagctgcgagcagtagcatacgatgatgcgaaacgtggacagagcttgatgtctattgttgagagagagaggagccaggttaattctaaagtagctgaattcgaaaatctattgcaaaatccttatgcatcttcatcaacttctgctcttaatgctcaaagtccttttcctggtgccacaccaagtgcctcattgagtgctcaaagtccttttcctggtgccactccaagtgcctcaagtccttttcctggcgccgcaccaaatgcctcattgagtgctcaaagtccttttcctggtgctgcaccaaatgcattgtcaagtgctcaaagcagttttcctccttcagcctcaagttttagtcagttgggaaccatactgaatacagggacatcaactccaccaactagtacatttgggcaacccagtctccctgggaactcttttaagacatcaaattcatctggggtgaatgctttttcatttgggaaatacatcaacatcaggtaatttgacagggttttcgagtattatcagtcttgagtatgcgtttttatttagtagcttgactttgcttgcaggttcctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0029E19-6E89K/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0029E19.1" temp_strand="+" temp_description="C12HBa0029E19.1  AC235812.2 htgs_phase:1 submitted_to_sgn_as:gi|239735642|gb|AC235812.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-29E19, WORKING DRAFT SEQUENCE, 11 unordered pieces">
        <position start="22217" stop="28594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22517" g_stop="22577" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23824" g_stop="24028" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="266" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25629" g_stop="25717" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25807" g_stop="25902" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="451" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26909" g_stop="27002" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="545" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27317" g_stop="27645" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="874" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27646" i_stop="28092" i_length="447">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28093" g_stop="28294" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="1076" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0029E19.1" gen_strand="+" ref_id="SGN-M7056" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1076</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0029E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22517" e_stop="22577"/>
          <exon e_start="23824" e_stop="24028"/>
          <exon e_start="25629" e_stop="25717"/>
          <exon e_start="25807" e_stop="25902"/>
          <exon e_start="26909" e_stop="27002"/>
          <exon e_start="27317" e_stop="27645"/>
          <exon e_start="28093" e_stop="28294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAGGTAAAAATAACTAAAAAATTGGTTTTAATTTCAATCTATATACTTTATTATGCATATATTCATAGGATTCTTGATTAACCCTTGAAACTTTCATGTCAAAGATTCAATTTTTATTTAGTATTATTCTTTTGCTAATCGATATAAAGGTGTAGAGTTGAGTAAAAATAGTTTCTTTGAGCATTTTATTGGGTGGGGATGGGGGTGAAGTTGTTTAGGATTGATGGGAAGTTGGTTGATTGATTGTTGTACTTAATATTTATTATAATGGTTGAAATATCCCAGCTAAGTAAAGTTATGAGCTTTAGCATCAAAGGGTGTTGTAGATGGTTAATGAAGTGGGTTGTAAATCATGATGTCGCTAGTTTAAATCCCAATGTAGGTAGAAACACTTGGTGATTTCTTAAAATTTGTCCAGGTCTGGTGGATAGAGTTATCTGGTATGGCCGGGGTGGGGGATGAATTTAGAAAATTCATATTGCCTTAGTGGTTTAGGATTGATGGGAAGTTGGTTGCTTGATTGTTGTATTCAATCTTTATGGTAATGGTTGAAAGATCTTAGCTAAGTAAAGTCATGAGCTTTAGGGTCAAAGGGTGTGGCCGGTGGATAATAAAGAGGGTTGAGAATCATGATGTCTCATGTTCAAATCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTATGATGTCTCATGTTCAAGTCCTAGCAAAGGAATAAATATTACTCCCTCCGTTTCAATTTGTTTTTCTTACTTTTCTTGTTATTTTGTTTCAAAAAGAATGTCTCTTTCCTTTTTCTGGGAACTCATCAAGAATGAATGTTAAGCATGCCTCTTATTTACATTAGTGTGGGATAACAGGGACCTACCAAAAGGTTAAATGAAGGGGGGACAGATCCCCGGTTGAACCTTTTTTATTTTTTCATATATCTGGATATATAAAGCTAGGTTGGGAAGTGAACTCGCGGGAGGTAGGGGGTTGTGTTTCCTTTTCAAATTACATAATATTGACCTAAGATCGAATAATAATTGGTATGATATTCCATCTAGAACTTAGAAAGGTGGTGTTTTTGCTGTGATGTCTTAGAAAGTAAAAATGATGTCTTTAACTTGAAACATAAAAATTCTTAATTTAATTAGTAGTTCTTTATGAGAGTTGAGTAATCCTTGTTATGAATAGGTTCCTTTGTTTGAGTATGAAAAATAGGATCTGATTGTTGTCTTATTCATCCAGCTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAGGTACTTTAGCTGTTACTCTCTAATTATAGCTGTTTGCTGCAGATTATTTAGCATTTATTATATTTATTATAAATAATATGCTTCCTCAGTACCATTTTTGAGGAGTCCTCTCTCCATATTTTCAATTTTACCTGCTAATACATGCCAAGCGATAATGGCTCTCTAGATATTTTAATCCTAGACACTAGAATTCATATCATTCTTTATCTTCATGTCTCAACAAGTGTTAACATGTTGTAAGTGCTCAATGGTATTATCTTAAGAGTTGAAGAAACGGTGGTGAGTCATAAAGATAAAGAATTGGAAGTAAGAAATTTAGAAATGTCCCATGGGTATGGCCTAGTCCCCAATGAAGTGGGTTGAGAACCATGAGGTCTCATGTTCAAAGCCCAACGAAGCCATCCTACTCCAAAAAATTGAAACGTCACCTGTAGATCTTGACGTCACCCACTCTAGTCCCAAAATACTGAAGAACATCTGCCAAACTTAAAATCAGACTGAACAGTGTAATAATAGAGGATTCATTTGTTCCAGAATTCTCTCAACTCATGTAGCATCTATTACTTAGATAAAAGCCACTTCTTTGCAAGTTGTTTTCGCTAAGGCAAGCTTCTTCCTCCGTTTCTTTTTTTGAAATGGTAACACAAACTTCTTTGTTCAACAACCATACAAAACACGTAACCAAGTGGGGGCTTTTGATTTCCAAACTTATTTCCTATGAACCTTCAGAATTACAAGGGTTTGTCCTGTTAGAACATTGTAACAAGACTTCAAAGTGAACTTCCCATTCATATTTCCTTTCCGTTCCAATCTGCCATTGCTGCTATTTAAGCCTTGAAAGTTATATGAACCATTGAAAATTCAGTCATGTCAGGCCTTACATTTTCTTAAATATGTGTTAATAAGAATGTAGCTGTTGTGGGGTTTACATATAGAGAAGGAACAGGATTTTGGTTGACAACATACGAGTCCTTCTCGTTAATTGAAAAAGAAGTTTCAATAGCAAGACTGCTACGAAATTTTATATGCTATCTGAAGTTTCATCTTTACAAGGCCATCTTTTAATTTCAGCGAACAAAATAATGGCACTGATGCTTTCTTCATACTAAAAAGTCACATGAATCTTAAGGAAAGGTTGATAAAGGGAAACATATGGAGTTAAATATTTTATAATAAGTTTGTGGAGTCCAATACTTACTGTTTTGTATTTGTGGTTATTAAAATTTTCCAATGTACATACTGTTGTCACCAACAGCAGTTTACTGGTGAGTCAATATTTACGTATGGTCCTTGTAACTTTCAGTATTATTTCTTTATCAGATCAGTGACATATTCATGTAATACAACTATGATTGTGGACTTTTGCATGAGTATGTGTAGGTTCGATTCTATCCTGTTTTCTAGATGTTATGAAGAACTAAAATGAATTGATAGGTTTTTATCAAAAAAAAAAAAAAAAATGAATTGATAGGTTTTATGACAATGTAAAAGTCTAGGTGACCTAGAAGTAAACTCTCCCAGGATTGAGTCATCTGGTTTATCCTGAATAAACTCTTATCAGGTCTTCATATGCATACTAACTTCTTTTTTTCATTTTTAGCCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACACGTGAGTGCTCTGTGGCACAAACCTTTCTGTTTTGCTTTTAGCATTATGATTTAAGTGGAATTAATGGTTTGTTTCTGCTACATGTGAAGCTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAAGTATGTTTTAGATCTTAACTTTACTTCACTCACTTTTCTAAATCAGCTTGCGTCATACTTTGAGTTTCTCTCATGAAGAAGACCCATTGTAGATCATTCTGTTTTGTTTGGCAAGTCATCTAGTTTCTTTAATTAGTATTAATTGGAATATGAAGATCCCCAGCCCTCTCTTTTATTTGCCAATTTAAGTACTCATCAAGCTTCTTTAATTATTATTGAGAGTTAATGAGTTGGATCATTTGCCAGATAGAGTTTGGAGACAATTCAACAGAGCCCACAGAGTTCTCTCTTCCCTAAATGATCTACTACTCAAAGAACGAATCATGCATTAACACAAATACTAGTATCTTTTTAGTTTGTGCCTTTTATCAGCTATTGGCCCCCCCCCCCTCCCCCCCCCCCATATTTTGTTCTTTCCTAGTCTCAGGCCCAGCCTTCGCTTTCTTCAATGGCCAAGTTGAAGAGTTCAACATCCGCCTACCACTTCTATTTCAAGGTTGAGCTTGTTCAGTTGAAGCCTGTCTTGGGAGATGACAATTTTCAAATCTTAGTCTGAGGAATTTTGGTTGGAGACAGTGTTCAGGGAAGCGTGAAGCGGTAAAAAGTAATAGGGCCCCGCTTCACGCTTTAGGCGATGAAGTGCTCACATACTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATTGCTTCGCTTCATCGCTTGCTCGCTTGCTCGCTTTCTTGAACACTGGTTGGAGAAGTGATTGCACCTTTTCTCTTTCTTTTCAAACTAAAATATCATAGGGTGCACTTGTTGCAACTCCTCTAGAGAGCATCCTCTTAGTTTCTACTCTTTCTCTATTCTAAAACTGAAAGTAGAAAAAAGAAAAAGATTCATATTTCTATTCTATGGAACCCTGCATATATCTGGTGGGCCCATATTCAAATTCTATGTACACGTGCCTGTTTCATGAAATTGGTAGATCAAAGAGATTGATCAGCAGTTGCAATTTGTTTTGTATGCAGTGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATTGTAAGACACCGCCGTCGCTACCTTCTTGATCTGTCTTCTTGGCTGATACTGATTGGTGCAATTGCAAATTGTTTTCATTATTTGAATATATGCATAAATGCAATTTACTCTCAAAAATCAATCAAAGAATTCTATCTTATCGAAAAGGAAGACTTTGAGGTGCAGCAGAGGGCTTTAGATTAGTTAAGAGAGATAACTAACTTAACATGATTCACAACTTATTAGTAAACTCTTATCATTTCATCAGCTAATATCATCTTGTGATTTTGCTTCTAAGTTCTAACAAACCTTTTTCTGTCCTCGTGTTAATGCAGGTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGGGTTAGACTGATGCATAAGAACCTGCATTAGTGCATTTATACTAGAATTTGGCTTTTTTGATAAGTTAATTTTACTGTTAGCTAAACCAAAATCAATTAGTAATGAGCTAATAAAATCTATCGTAGCAACATCTTCATAACATGATTTAATTTACATCCAACAAGCCAGTAAGCTAAGAGATTTACATTTCATCATGTAGATAGCTGCAGCTTTTCCTTCAAACCACAGCTGGTCTCTTTGCTTGCAGACCGTCCATAATATGAAGATTGGAATTTTCTTCCAAATCTTTCTCAGTTCCTTTTTTATATAACATCCAGCACTGAAGTTCTTTAATCGTCTTTGGTAGAAATATTATTTTTCTCACACATGTAGTTTCTACCATAAATCTGCATATGCTAGAATTTTGGCTATTACCAGCTTCTGACTTCATTTTTTTCAAATTAACAGGACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGG-AATACATCAACATCAGGTAATTTGACAGGGTTTTCGAGTATTATCAGTTCTTGAGTATGCGTTTTTATTTAGTAGCTTGACTTTGCTTGCAGGTTCCTTTGG</genome_strand>
        <mrna_strand>AAAAAGGACTTAACTCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC.........................................................................................CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT..........................................................................................................................................................................................................................................................................................................................GTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGGAAATACATCAACATCAGGTAATTTGACAGGGTTTTCGAGTATTATCAG-TCTTGAGTATGCGTTTTTATTTAGTAGCTTGACTTTGCTTGCAGGTTCCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="22514" PGL_stop="28294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22514" e_stop="22577"/>
            <exon e_start="23824" e_stop="24028"/>
            <exon e_start="25629" e_stop="25717"/>
            <exon e_start="25807" e_stop="25902"/>
            <exon e_start="26909" e_stop="27002"/>
            <exon e_start="27317" e_stop="27645"/>
            <exon e_start="28093" e_stop="28294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.701" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.581" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="22514" e_stop="22577" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="22578" i_stop="23823" i_length="1246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23824" e_stop="24028" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.968">
            <gDNA_intron_boundary i_start="24029" i_stop="25628" i_length="1600"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25629" e_stop="25717" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25718" i_stop="25806" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25807" e_stop="25902" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25903" i_stop="26908" i_length="1006"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26909" e_stop="27002" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.701" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27003" i_stop="27316" i_length="314"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27317" e_stop="27645" e_length="329"/>
          </exon>
          <intron i_serial="6" don_prob="0.581" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27646" i_stop="28092" i_length="447"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="28093" e_stop="28294" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22514" stop="22577"/>
              <exon start="23824" stop="24028"/>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7056-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22517" stop="22577"/>
              <exon start="23824" stop="24028"/>
              <exon start="25629" stop="25717"/>
              <exon start="25807" stop="25902"/>
              <exon start="26909" stop="27002"/>
              <exon start="27317" stop="27645"/>
              <exon start="28093" stop="28294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAAAAGGACTTAACGCTATGCCTCCAAGGAAAGAACCCTGCAGAAATTTTATGCGTGGCAG : CTGTCAATATGGTGAACGTTGTAAATTTCTTCATGCTGCCCAACAACAACCGAAGCCAAATCCATTTGGATTTGGCAGTCAATCCACTAATTTTCAGAGTACAAATATGCAGCAGACAAAGTCCAACCCTTTTGGTTTTGGTGTTCAGAGCAACTCCCAGCCAAGAGGTTCTAGTGATTTGGGGCTCAAACAGAATCAATACAAG : CCTTTTGAAAACAAGTGGACTCGTTCTGCAACTACCAACAGTTCTTCATCGCGGCAAACCGACAATCAGCCTGTAGCACCTAATCACAC : CTGCACAGATGCTGAGTCATGCAGACGCCAGATTGTGGAAGATTTTAATAATGAGAAGCCATTGTGGCTGCTTACCTGCTATGGTCATCGTAAAAA : TGGTCCTTGTGATATTACTGGTGATGTTAGCTATGAAGAGCTGCGAGCAGTAGCATACGATGATGCGAAACGTGGACAGAGCTTGATGTCTATT : GTTGAGAGAGAGAGGAGCCAGGTTAATTCTAAAGTAGCTGAATTCGAAAATCTATTGCAAAATCCTTATGCATCTTCATCAACTTCTGCTCTTAATGCTCAAAGTCCTTTTCCTGGTGCCACACCAAGTGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCCACTCCAAGTGCCTCAAGTCCTTTTCCTGGCGCCGCACCAAATGCCTCATTGAGTGCTCAAAGTCCTTTTCCTGGTGCTGCACCAAATGCATTGTCAAGTGCTCAAAGCAGTTTTCCTCCTTCAGCCTCAAGTTTTAGTCAGTTGGGAACCATACTGAATACAGG : GACATCAACTCCACCAACTAGTACATTTGGGCAACCCAGTCTCCCTGGGAACTCTTTTAAGACATCAAATTCATCTGGGGTGAATGCTTTTTCATTTGGGAATACATCAACATCAGGTAATTTGACAGGGTTTTCGAGTATTATCAGTTCTTGAGTATGCGTTTTTATTTAGTAGCTTGACTTTGCTTGCAGGTTCCTTTGG</gDNA_template>
            <first_frame> Q  K  K  D  L  T  L  C  L  Q  G  K  N  P  A  E  I  L  C  V  A   : A  V  N  M  V  N  V  V  N  F  F  M  L  P  N  N  N  R  S  Q  I  H  L  D  L  A  V  N  P  L  I  F  R  V  Q  I  C  S  R  Q  S  P  T  L  L  V  L  V  F  R  A  T  P  S  Q  E  V  L  V  I  W  G  S  N  R  I  N  T  S :   L  L  K  T  S  G  L  V  L  Q  L  P  T  V  L  H  R  G  K  P  T  I  S  L  *  H  L  I  T   : P  A  Q  M  L  S  H  A  D  A  R  L  W  K  I  L  I  M  R  S  H  C  G  C  L  P  A  M  V  I  V  K   : M  V  L  V  I  L  L  V  M  L  A  M  K  S  C  E  Q  *  H  T  M  M  R  N  V  D  R  A  *  C  L  L :   L  R  E  R  G  A  R  L  I  L  K  *  L  N  S  K  I  Y  C  K  I  L  M  H  L  H  Q  L  L  L  L  M  L  K  V  L  F  L  V  P  H  Q  V  P  H  *  V  L  K  V  L  F  L  V  P  L  Q  V  P  Q  V  L  F  L  A  P  H  Q  M  P  H  *  V  L  K  V  L  F  L  V  L  H  Q  M  H  C  Q  V  L  K  A  V  F  L  L  Q  P  Q  V  L  V  S  W  E  P  Y  *  I  Q   : G  H  Q  L  H  Q  L  V  H  L  G  N  P  V  S  L  G  T  L  L  R  H  Q  I  H  L  G  *  M  L  F  H  L  G  I  H  Q  H  Q  V  I  *  Q  G  F  R  V  L  S  V  L  E  Y  A  F  L  F  S  S  L  T  L  L  A  G  S  F   </first_frame>
            <second_frame>  K  K  R  T  *  R  Y  A  S  K  E  R  T  L  Q  K  F  Y  A  W  Q  :  L  S  I  W  *  T  L  *  I  S  S  C  C  P  T  T  T  E  A  K  S  I  W  I  W  Q  S  I  H  *  F  S  E  Y  K  Y  A  A  D  K  V  Q  P  F  W  F  W  C  S  E  Q  L  P  A  K  R  F  *  *  F  G  A  Q  T  E  S  I  Q   : A  F  *  K  Q  V  D  S  F  C  N  Y  Q  Q  F  F  I  A  A  N  R  Q  S  A  C  S  T  *  S  H  :  L  H  R  C  *  V  M  Q  T  P  D  C  G  R  F  *  *  *  E  A  I  V  A  A  Y  L  L  W  S  S  *  K  :  W  S  L  *  Y  Y  W  *  C  *  L  *  R  A  A  S  S  S  I  R  *  C  E  T  W  T  E  L  D  V  Y   : C  *  E  R  E  E  P  G  *  F  *  S  S  *  I  R  K  S  I  A  K  S  L  C  I  F  I  N  F  C  S  *  C  S  K  S  F  S  W  C  H  T  K  C  L  I  E  C  S  K  S  F  S  W  C  H  S  K  C  L  K  S  F  S  W  R  R  T  K  C  L  I  E  C  S  K  S  F  S  W  C  C  T  K  C  I  V  K  C  S  K  Q  F  S  S  F  S  L  K  F  *  S  V  G  N  H  T  E  Y  R  :  D  I  N  S  T  N  *  Y  I  W  A  T  Q  S  P  W  E  L  F  *  D  I  K  F  I  W  G  E  C  F  F  I  W  E  Y  I  N  I  R  *  F  D  R  V  F  E  Y  Y  Q  F  L  S  M  R  F  Y  L  V  A  *  L  C  L  Q  V  P  L  </second_frame>
            <third_frame>   K  K  G  L  N  A  M  P  P  R  K  E  P  C  R  N  F  M  R  G  S :   C  Q  Y  G  E  R  C  K  F  L  H  A  A  Q  Q  Q  P  K  P  N  P  F  G  F  G  S  Q  S  T  N  F  Q  S  T  N  M  Q  Q  T  K  S  N  P  F  G  F  G  V  Q  S  N  S  Q  P  R  G  S  S  D  L  G  L  K  Q  N  Q  Y  K  :  P  F  E  N  K  W  T  R  S  A  T  T  N  S  S  S  S  R  Q  T  D  N  Q  P  V  A  P  N  H  T :   C  T  D  A  E  S  C  R  R  Q  I  V  E  D  F  N  N  E  K  P  L  W  L  L  T  C  Y  G  H  R  K  N :   G  P  C  D  I  T  G  D  V  S  Y  E  E  L  R  A  V  A  Y  D  D  A  K  R  G  Q  S  L  M  S  I  :  V  E  R  E  R  S  Q  V  N  S  K  V  A  E  F  E  N  L  L  Q  N  P  Y  A  S  S  S  T  S  A  L  N  A  Q  S  P  F  P  G  A  T  P  S  A  S  L  S  A  Q  S  P  F  P  G  A  T  P  S  A  S  S  P  F  P  G  A  A  P  N  A  S  L  S  A  Q  S  P  F  P  G  A  A  P  N  A  L  S  S  A  Q  S  S  F  P  P  S  A  S  S  F  S  Q  L  G  T  I  L  N  T  G :   T  S  T  P  P  T  S  T  F  G  Q  P  S  L  P  G  N  S  F  K  T  S  N  S  S  G  V  N  A  F  S  F  G  N  T  S  T  S  G  N  L  T  G  F  S  S  I  I  S  S  *  V  C  V  F  I  *  *  L  D  F  A  C  R  F  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0029E19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22516" stop="22577"/>
                    <exon start="23824" stop="24028"/>
                    <exon start="25629" stop="25717"/>
                    <exon start="25807" stop="25902"/>
                    <exon start="26909" stop="27002"/>
                    <exon start="27317" stop="27645"/>
                    <exon start="28093" stop="28246"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKGLNAMPPRKEPCRNFMRGSCQYGERCKFLHAAQQQPKPNPFGFGSQSTNFQSTNMQQTKSNPFGFGVQSNSQPRGSSDLGLKQNQYKPFENKWTRSATTNSSSSRQTDNQPVAPNHTCTDAESCRRQIVEDFNNEKPLWLLTCYGHRKNGPCDITGDVSYEELRAVAYDDAKRGQSLMSIVERERSQVNSKVAEFENLLQNPYASSSTSALNAQSPFPGATPSASLSAQSPFPGATPSASSPFPGAAPNASLSAQSPFPGAAPNALSSAQSSFPPSASSFSQLGTILNTGTSTPPTSTFGQPSLPGNSFKTSNSSGVNAFSFGNTSTSGNLTGFSSIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 4048 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 5720 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:21:33
-->
