<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-04-06 08:28:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315963" ref_strand="+" ref_description="SGN-U315963        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCI type III (LHCA3.1), nearly identical to PSI type III chlorophyll a/b-binding protein GI:430947; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to PSI type III chlorophyll a/b-binding protein GI:430947 from (Arabidopsis thaliana) | chr1:22703675-22705048 FORWARD | Aliases: T25B24.12, T25B24_12(evalue: 2e-123, score=439) genbank/nr: gi|82080|pir||S04125 chlorophyll a/b-binding protein type III precursor - tomato gi|226872|prf||1609235A chlorophyll a/b binding protein(evalue: 2e-125, score=452)">
      <seq>acttgctggcctatacctttgtcccttattttgcttgccaccttgtgtctactactcttggaagctgagtgtgtgttcatcttcaacacaagtcaattgctctaatcagaaaacaaaagatggcaacacaggcattgatctcttcatcatctattgcatcctcaacagaggctgccagacaaattctaggaggaagacctttccaatctcaaatcaagaaggcttcctttgttgtaagggctactgccactccacctgttaagcaaggagcaaataggcctctctggtttgcctccaagcagagcctttcatacttagatggcagccttcctggtgattatggatttgatcccctgggactgtcagaccctgaaggtactggaggtttcattgaaccaaaatggctagcatatggagaggtcatcaatggaagatttgctatgttgggagtagtaggagccattgcgcccgagattcttggaaaggctggtctcatcccaccagagacggcccttccatggttccaaacaggagtgattcctccagctggaacatacaactattgggcagacggctacacactatttgtactggagatggcactcatgggatttgctgaacacagaagattccaggactgggccaagccaggttctatgggtaaacaatactttttgggactagagaaaggcttgggaggttctggagacccagcatacccaggtggacctttctttaaccctctcgggttcggaaaagatgagaagtctatgaaggacttaaagctaaaggagattaagaatggaagactagctatgttgggtatcttaggttacttcattcaaggtttggtaactggagttggaccttaccaaaacctccttgaccatttggctgaccctgcaaacaacaatgtcttgaccagcctcaagttccactaaacaaggagcaaatcaccctgttttagctaccctgatctgatatgtaaacattatgtgcagatattattttgcatatcattgtaatcagctaaaaaggacatgtcaacaaaaacctgtttttcctgagttttagctgttagcttcctgctgcagtttctgcagcattctttaggatcatgtgtaaactcaattctctaagacaaaaaaaagagcaaatactggattaaacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="7867" stop="5568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7567" g_stop="7305" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7304" i_stop="6902" i_length="403">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6901" g_stop="6840" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="325" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6839" i_stop="6725" i_length="115">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6724" g_stop="5867" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="1183" r_length="858" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U315963" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1183</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7567" e_stop="7305"/>
          <exon e_start="6901" e_stop="6840"/>
          <exon e_start="6724" e_stop="5867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCTGGCCTATACCTTTGTCCCTTATTTTGCTTGCCACCTTGTGTCTACTACTCTTGGAAGCTGAGTGTGTGTTCATCTTCAACACAAGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGACAAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAGAAGGCTTCCTTTGTTGTAAGGGCTACTGCCACTCCACCTGTTAAGGTAACACCCCTTTCTTCTTCCTTTCCTATGTGAATAACAAGAATATTGACATACATATACATACAATGGTCGTGTAGTTCGAATCAGCATATAGCATTGTTTGCATGTGTTGAGGTTTTCATCCCACTTCATTTACTACTAGGACACCCATGGGTTACATTTGGTTTGTGTGTGTATGGTGTACAACAGTGGAATTTGAGTCAGCTTTGCCTTTTGAGTTTTGACTAGTCCACCAGATACTTGTACTTCAAAGCTTAGGTAGATGAGAGAAGAAAGCATATGGCATCACTCCTCTCATTTGAAGCCTAGAATCTGGGGTTTTCAACTCACTTCATTTACCGTCAAGCTACACCATTGGGTTACATTTGATTTTTATGTATTGATATATTTTTGTGTTGAACAGCAAGGAGCAAATAGGCCTCTCTGGTTTGCCTCCAAGCAGAGCCTTTCATACTTAGATGGCAGGTAAGACTGATGGGACTCTCACTTAACCCTTATATACATTATTTCATAACTTGTGCATGTTGTCTATGCAACTTGTCTGATTACTCAATGAACTTCATTTGTATGTAATCCACAGCCTTCCTGGTGATTATGGATTTGATCCCCTGGGACTGTCAGACCCTGAAGGTACTGGAGGTTTCATTGAACCAAAATGGCTAGCATATGGAGAGGTCATCAATGGAAGATTTGCTATGTTGGGAGTAGTAGGAGCCATTGCGCCCGAGATTCTTGGAAAGGCTGGTCTCATCCCACCAGAGACGGCCCTTCCATGGTTCCAAACAGGAGTGATTCCTCCAGCTGGAACATACAACTATTGGGCAGACGGCTACACACTATTTGTACTGGAGATGGCACTCATGGGATTTGCTGAACACAGAAGATTCCAGGACTGGGCCAAGCCAGGTTCTATGGGTAAACAATACTTTTTGGGACTAGAGAAAGGCTTGGGAGGTTCTGGAGACCCAGCATACCCAGGTGGACCTTTCTTTAACCCTCTCGGGTTCGGAAAAGATGAGAAGTCTATGAAGGACTTAAAGCTAAAGGAGATTAAGAATGGAAGACTAGCTATGTTGGGTATCTTAGGTTACTTCATTCAAGGTTTGGTAACTGGAGTTGGACCTTACCAAAACCTCCTTGACCATTTGGCTGACCCTGCAAACAACAATGTCTTGACCAGCCTCAAGTTCCACTAAACAAGGAGCAAATCACCCTGTTTTAGCTACCCTGATCTGATATGTAAACATTATGTGCAGATATTATTTTGCATATCATTGTAATCAGCTAAAAAGGACATGTCAACAAAAACCTGTTTTTCCTGAGTTTTAGCTGTTAGCTTCCTGCTGCAGTTTCTGCAGCATTCTTTAGGATCATGTGTAAACTCAATTCTCTAAGACAAAAAAAAGAGCAAATACTGGATTAAACATAGCATTAAAAG</genome_strand>
        <mrna_strand>ACTTGCTGGCCTATACCTTTGTCCCTTATTTTGCTTGCCACCTTGTGTCTACTACTCTTGGAAGCTGAGTGTGTGTTCATCTTCAACACAAGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGACAAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAGAAGGCTTCCTTTGTTGTAAGGGCTACTGCCACTCCACCTGTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCCTCTCTGGTTTGCCTCCAAGCAGAGCCTTTCATACTTAGATGGCAG...................................................................................................................CCTTCCTGGTGATTATGGATTTGATCCCCTGGGACTGTCAGACCCTGAAGGTACTGGAGGTTTCATTGAACCAAAATGGCTAGCATATGGAGAGGTCATCAATGGAAGATTTGCTATGTTGGGAGTAGTAGGAGCCATTGCGCCCGAGATTCTTGGAAAGGCTGGTCTCATCCCACCAGAGACGGCCCTTCCATGGTTCCAAACAGGAGTGATTCCTCCAGCTGGAACATACAACTATTGGGCAGACGGCTACACACTATTTGTACTGGAGATGGCACTCATGGGATTTGCTGAACACAGAAGATTCCAGGACTGGGCCAAGCCAGGTTCTATGGGTAAACAATACTTTTTGGGACTAGAGAAAGGCTTGGGAGGTTCTGGAGACCCAGCATACCCAGGTGGACCTTTCTTTAACCCTCTCGGGTTCGGAAAAGATGAGAAGTCTATGAAGGACTTAAAGCTAAAGGAGATTAAGAATGGAAGACTAGCTATGTTGGGTATCTTAGGTTACTTCATTCAAGGTTTGGTAACTGGAGTTGGACCTTACCAAAACCTCCTTGACCATTTGGCTGACCCTGCAAACAACAATGTCTTGACCAGCCTCAAGTTCCACTAAACAAGGAGCAAATCACCCTGTTTTAGCTACCCTGATCTGATATGTAAACATTATGTGCAGATATTATTTTGCATATCATTGTAATCAGCTAAAAAGGACATGTCAACAAAAACCTGTTTTTCCTGAGTTTTAGCTGTTAGCTTCCTGCTGCAGTTTCTGCAGCATTCTTTAGGATCATGTGTAAACTCAATTCTCTAAGACAAAAAAAAGAGCAAATACTGGATTAAACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341161" ref_strand="+" ref_description="SGN-U341161        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin motor protein-related | chr1:27196564-27201976 FORWARD | Aliases: T9N14.6, T9N14_6(evalue: 2e-66, score=249) genbank/nr: kinesin(evalue: 8e-65, score=250)">
      <seq>tggcaacctcggttctagatgggtacaatgcgggcatatttgcctacggtcagacaggtactggcaagacatttacaatggaaggcacagaagaatctcgtggggccaattaccgaactcttgaggagctattccgcattattgaggagagaaagaacgcagttcggtatgaaatatcagtgagcgtcttggaagtatacaatgagcagattcgggatttgcttgtttcaagatctcaacaaggcgtgaaaaggcttgaaatcaagcaagatggagaaggaatgcatcatgttcctggactagttgaggcccacgtgaataatatgaatgaagtttgggaagctttacgaactggtagcaatgcgagggcagttggatcaaccaatgcaaatgagcacagcagccgatcacattgcatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="15050" stop="16296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15350" g_stop="15602" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15603" i_stop="15834" i_length="232">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15835" g_stop="15996" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="415" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15997" i_stop="16078" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16079" g_stop="16086" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="423" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U341161" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15350" e_stop="15602"/>
          <exon e_start="15835" e_stop="15996"/>
          <exon e_start="16079" e_stop="16086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAACCTCGGTTCTAGATGGGTACAATGCTTGCATATTTGCCTACGGTCAGACAGGTACTGGCAAGACATTTACAATGGAAGGCACAGAAGAATCTCGTGGGGTCAATTACCGAACTCTTGAGGAGCTATTCCGCATTATTGAGGAGAGAAAGAACGCAGTTCGGTATGAAATATCAGTGAGCGTCTTGGAAGTATACAATGAGCAGATTCGGGATTTGCTTGTTTCAGGATCTCAACAAGGCGTGAAAAGGTAGCTATAAAATAATCTTCTCACTTTTTTTACAAGCTAGTGGAGTTATACTTCAGAGAGTTGCCAAGCTATCAAGAACGAAGAGAACAATGTATCTTGTAAAATATGATTTTTATCAGTTAACTATACTTGTATGGCTGAGAATGATTCCTGTGGTGGACTACAGAAAATTCGAGTCTAATCCTAAACTACCATATGACAGTTTCATGTTGGTTCCATGAATTTATTTTAGGCTTGAAATCAAGCAAGATGGAGAAGGAATGCATCATGTTCCTGGACTAGTTGAGGCCCACGTGAATAATATGAATGAAGTTTGGGAAGCTTTACGAACTGGTAGCAATGCGAGGGCAGTTGGATCAACCAATGCAAATGAGCACAGCAGCCGATCACATTGGTTTGTGCATATAATTTATAGTAGATTTTCTTTTGTTTACACATTATGTCACTATTACTAATCAGGTACATTGTGTGTGTAGCATACATT</genome_strand>
        <mrna_strand>TGGCAACCTCGGTTCTAGATGGGTACAATGCGGGCATATTTGCCTACGGTCAGACAGGTACTGGCAAGACATTTACAATGGAAGGCACAGAAGAATCTCGTGGGGCCAATTACCGAACTCTTGAGGAGCTATTCCGCATTATTGAGGAGAGAAAGAACGCAGTTCGGTATGAAATATCAGTGAGCGTCTTGGAAGTATACAATGAGCAGATTCGGGATTTGCTTGTTTCAAGATCTCAACAAGGCGTGAAAAG........................................................................................................................................................................................................................................GCTTGAAATCAAGCAAGATGGAGAAGGAATGCATCATGTTCCTGGACTAGTTGAGGCCCACGTGAATAATATGAATGAAGTTTGGGAAGCTTTACGAACTGGTAGCAATGCGAGGGCAGTTGGATCAACCAATGCAAATGAGCACAGCAGCCGATCACATTG..................................................................................CATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312635" ref_strand="+" ref_description="SGN-U312635        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutathione S-transferase, putative, similar to glutathione transferase GI:2853219 from (Carica papaya) | chr1:29491306-29492799 REVERSE | Aliases: F3F9.11, F3F9_11(evalue: 8e-86, score=313) genbank/nr: gi|19817|emb|CAA45741.1| C-7 [Nicotiana tabacum] (evalue: 4e-97, score=357)">
      <seq>taatttcatctagtatatatcttttaattatatcaaaaaatgagtaatgaagttgttcttttgagtgcttatgtgagtatgtttggtatgagggtaagaattgcattacatgaaaaagggattcaatatgaatataaagaggaagatttgagtaataaaagtgaacttttattacaaatgaatccaattcataagaaaattccagtgttaattcataatggaaaaccaatttgtgagtcacttataattgttgagtacatagatgaagtttggaaggacaaatctcctttgatgccttttaatccttataagagggctcaagctaggttttgggctgattttattgacaaaaaggtctatgatagcggaaagagaatatgggctacaaaaggagaagatcaagaggcagccaagaaagaattcatagaatacctaaaactattggaaggagaattaggagataagacatatttcaatggagaaaattttggatttgtggatttggctttaattcctttctatagttggttcccaacttttgagaaatttgggaattttaacatagagaaagagtgtccaaagtttgtggcatgggccaacaaatgtatatataaagatagcgtctccaaatctctagcggaatcaaataaagtttatgagtatgtgttaaaaatgaaacaacaccttggccttccatagagaaatatatgaagaagcgcgctctatattatggtcttttcgttctattcgtataaacagacttgatgaagttcagctatgaagatattgttacgtatgatagttggtatgttttattttttgaaaagttatggagttgtcatagaataaatgttgttaatctatacttgtttttacggtatgctattaagggatggatgtcttcttggtgtaataaaactactttaggtagaaaggagattttataatattataaaacttttattgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="27910" stop="25790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27610" g_stop="27257" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27256" i_stop="26704" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26703" g_stop="26093" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="965" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U312635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>965</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27610" e_stop="27257"/>
          <exon e_start="26703" e_stop="26093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAGGTATATAATTACATCTATATATTATATTTTTTTTTATTACTAAAATATAGTTGGGCGTAAATATAAAAATATTAAAGTTAACAAGTTTGTAGGTAGTTGAGAATGATTGTACTAATTTTAGTTAGTTAAATAAGAAGTGTACGTTTGATTTTGGGATCACCGTTTTAAGTCATATGAATAGATGATTGACATCTATCAGTATTTTTGAAATTTCATATAATTAAATTTCAAGTATATATAATTGAAATTGAGATATCTTTTTTTACATGAAATTAATTCAATTATATAACTGAAATTCATGTATACATGAATAAAATTTAGTTGTTTTTGCTTGAATTTTAATCATAAAGATTAAAAGTTCAGATATTTTACTTGTATTTCAGTTTTTTTACTTGGTGTTCATCCACCTAGGGCGAAGTCGCTTTTATTCATCTTCATATTATTATTTTTATTGTATTTTTTTTTGTATATTTTAAAATTGAGATCAGATAAAAATATAATTTACTTGAATTAAAAAAAGAAAAATTTCTTAATAGATAACATTTTTTTTCAGGTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTTGTTTTTACGGTATGCTATTAAGGGATGGATGTCTTCTTGGTGTAATAAAACTACTTTAGGTAGAAAGGAGATTTTATAATATTATAAAACTTTTATT</genome_strand>
        <mrna_strand>TAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTTGTTTTTACGGTATGCTATTAAGGGATGGATGTCTTCTTGGTGTAATAAAACTACTTTAGGTAGAAAGGAGATTTTATAATATTATAAAACTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323673" ref_strand="+" ref_description="SGN-U323673        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutathione S-transferase, putative, Second of three repeated putative glutathione transferases. 72% identical to glutathione transferase (Arabidopsis thaliana) (gi:4006934). Location of ests 191A10T7 (gb:R90188) and 171N13T7 (gb:R65532) | chr1:5872142-5873079 FORWARD | Aliases: F20D23.12, F20D23_12(evalue: 3e-68, score=255) genbank/nr: gi|2920666|gb|AAC18566.1| 2,4-D inducible glutathione S-transferase [Glycine max] (evalue: 4e-71, score=271)">
      <seq>aagaatcacaaaaaccctcaacactcttaattacctcttcttcttacaagtctactaatatccctaacttttcaacaaaaaaaaaaacatgacacaagaagaagaagttgtacttttagattattgggctagtccttttggaacaatggcaagaattgccctagttgaaaagggagtcaatttcatccacaagtttgaggatttgtctaataaaagtcctttgcttttggaaatgaacccggttcatcacaaaataccggttcttgttcacaagggtaaatctatttgtgaatcaaatatcattattcaatatattgatgagatttggaaaaataattctcccttattgccctatgaaccttatcaaagagctaaagctaggttcttggttgactttatcaataaaaaggtacatgggtcaagtgtaaaggtatggatggggcaaattgaagagcaagaaaatggcaagaaagaacttgtagaatgttcaaagtttttggaagaagaacttggagataaactttattttggaggagatgtatttggatttgtagacattgcacttgttcctttctacaattggttcattgtcttcaagacctttgcaaatttcaacacaattgaaatacaatgccccaagttagtgatgtggggagaaaggtgtttgaatagagactcagtatccaagtcacttcctacttcaaatcaagtctaccaagcttatttggatttcaagaaaggttggtgatcacatggttaataaatatcgagatggattcagaattttatattttaatgattggatatcatatcacttattttgagatgggatcatataatgagttgtgagagggtctaataatttaacgtctaccttattagtcgatacatttgcatattgaagtaacgtaaatgataaatatgaatattaattgataaaaagtgtatttatttgaaagaacatgagttcactatctatgtattcatcttccttggaataatactagtcggtaccattaaatggtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="30272" stop="28117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29972" g_stop="29564" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29563" i_stop="29037" i_length="527">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29036" g_stop="28408" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="1038" r_length="629" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U323673" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1038</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29972" e_stop="29564"/>
          <exon e_start="29036" e_stop="28408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAGGTAAAGGACTTTTTAACTCTTCCTTAATTCATTTCATATATGTTTGTGTGATTTCATTACCTTGTATAGATTCAGGGTTGTTTTATTGGTGGTTAGAGTTACATATGTATTAGTATCTAAGAATCAGTTATACGTAGTTATGCAGAATTTAATCATTCAATGCATATATATTATTTCATTCATTTAAAAAGGAATGAACTTAGTTTCTTTTTAGTTTGTTTCAAAAAGAATGATTATAACCTTTTTTTGATAATATTTTAACTTTTCACATACATGTTTAAGACCATAAGATTAAAGAATATTTTGATATATTTGACTTAAATTAAAGTTAGAATCACGAGATTAAAAATTATCTTTTTTTTTCTTAAATTCTGTTTCAAATAAAATTAGGTCATTCTTTTTTTAAACAGAGAAGATATAATATAAATTAATACTTTTTTTTTGTTTTAATTTGTTTATTTTTTTGACTTGATATAAAGTTTAAGAAAAATTAAAAGGAATAACCCTACAAAGAGCATTAATTTTAGGTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAAAAGTGTATTTATATGAAAGAACATGAGTTCACTATCTATGTATTCATCTTCCTTGTAATAATACTAGTCGATACGATTAAATGTTGAAATCACGTAAA</genome_strand>
        <mrna_strand>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAAAAGTGTATTTATTTGAAAGAACATGAGTTCACTATCTATGTATTCATCTTCCTTGGAATAATACTAGTCGGTACCATTAAATGGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318448" ref_strand="+" ref_description="SGN-U318448        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | ethylene receptor 1 (ETR1), identical to GB:P49333 from (Arabidopsis thaliana) (Science 262 (5133), 539-544 (1993)) | chr1:24737827-24741029 FORWARD | Aliases: T27F4.9, T27F4_9(evalue: 0, score=1127) genbank/nr: gi|1163081|gb|AAA85479.1| ETR1 homolog [Lycopersicon esculentum] >gi|22095659|sp|Q41342|ETR1_LYCES Ethylene receptor 1 (LeETR1) (evalue: 0, score=1423)">
      <seq>gagccaactccattgtttcactttcccttttgatcatcatcaatcttcatcactttttttcgccccaattttttttttttttggccacgatgggatctcttctccggatgaatcgccttttatcttccatcgtggagtcatgtaactgcatcattgacccacagttgcctgctgacgacttgctaatgaagtatcagtacatttctgattttttcatagcacttgcttatttctccattccagtggagttgatatacttcgttaagaagtctgctgtctttccatatagatgggttcttgtgcagttcggtgctttcatagttctttgtggagcaacccatcttatcaacttatggacatttaatatgcatacaaggaatgtggcaatagtaatgactactccaaaggccttgactgcactggtgtcatgtataactgctctcatgcttgtccacatcattcctgatttattaagtgtcaaaactagagaactgttcttgaaaaagaaagctgcacagcttgaccgtgaaatgggtattattcggactcaggaggagacaggtagacatgttagaatgctaactcatgaaatccgaagcactcttgatagacatactattttaaagactacacttgttgagctaggaagaacattggcattggaagagtgtgcattatggatgccaacacgtactggactagagcttcagctttcttacactttacgacaccaaaatccagttggattaactgtacccattcaacttcctgtaatcaatcaagttttcggtacaaatcatgtcgtgaaaatatcaccaaattctcctgtcgcaagacttcgacctgctgggaaatacatgcctggtgaggtggttgctgtcagggttccacttctgcatctgtcgaactttcagattaatgattggcctgaactttcaacaaagcgctatgctttaatggttctgatgcttccttcagacagtgcaagacaatggcatgttcatgagctggagcttgttgaagtggtagctgatcaggttgctgttgctctttcacatgctgctatattagaagaatcaatgagggctagggatcttcttatggagcagaatgtggctcttgatctggcaagaagagaagcagaaatggctgttcgtgcacgtaatgatttcttggctgttatgaatcatgaaatgagaactcccatgcatgcaataattgcactttcttccttactacaagaaactgatctaactccagagcaacgtctgatggttgaaacaatcctcaaaagcagcaaccttttagcaacgctcatcaacgatgtcttggatctttcaaggctagaggatggaagtcttcaacttgatattggcactttcaatctccatgctttatttagagaggtccatagcttaatcaagcctattgcatctgtgaaaaagctgttcgtcacacttagtttgtcgtcagatttgccggaatatgtaattggggatgaaaaacggttaatgcaaattctcttaaacgttgttggcaatgctgtaaagttctcaaaggaaggcaacgtatcaatctccgcttttgttgcaaaatcagactctttaagagatcctagagcccctgaattttttgctgtgcctagtgaaaatcacttctatttacgggtgcagataaaagatacggggataggaattacaccacaggatattcccaacctgtttagcaagtttacacaaagccaagcgctagcaactacaaattctggtggcactgggcttggtcttgcaatttgtaagaggtttgtgaatcttatggaaggacatatttggattgaaagtgaaggtcttggcaaggggtctactgctatatttatcattaaacttggcattcctggacgtgcaaatgaatctaagctcccctttgtgaccaaattgccagcaaatcacacgcagatgagttttcaaggattaaaggttttggtgatggatgagaatggtgttagcaggatggtaaccaaaggtctgcttacacaccttggatgtgatgtaactactgttggctcacgcgatgagtgcttgagagttgttacacatgaacacaaggtagttatcatggatgtcagcatgcaaggtatagactgttacgaagttgctgtagtgatacatgaaaggtttgggaaacgtcacggtaggccacttattgtggcattaacggggaacacagacagagttacgaaagaaaactgcatgagagttggtatggatggagttatcctaaaacctgtgtcagtgtataaaatgagaagtgttttatctgagctcttagaacatggagttgtacttgaatcttagtgaatgtaggaggaaaatatgcagcaaccatatgaaaaattcacccaaatgcacgaggcgttgtatatagttctcgtctttggatttcttggtggataacacaatatatcacttgaagaaggtgtatgtaacgcgacgttgctcgaggcattcaacaaatttgtagaaaggagttgatttttccactaccagaagtgttcatattccatggaactttgtataagatactgatatttgacacaacccttcatttacttgaaacattagaaactttattgccttggcttgacacaacaaatagattattatgtgtttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="30934" stop="118682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31233" g_stop="31351" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31352" i_stop="35332" i_length="3981">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35333" g_stop="36250" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="1037" r_length="918" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36251" i_stop="37649" i_length="1399">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37650" g_stop="38018" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1406" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38019" i_stop="38160" i_length="142">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38161" g_stop="38427" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1407" r_stop="1673" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38428" i_stop="38557" i_length="130">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38558" g_stop="38685" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1674" r_stop="1801" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38686" i_stop="38828" i_length="143">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38829" g_stop="39026" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1802" r_stop="1999" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39027" i_stop="40985" i_length="1959">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40986" g_stop="41661" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="2000" r_stop="2676" r_length="677" r_score="0.997"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41662" i_stop="41748" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41749" g_stop="41776" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="2677" r_stop="2704" r_length="28" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U318448" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31233" e_stop="31351"/>
          <exon e_start="35333" e_stop="36250"/>
          <exon e_start="37650" e_stop="38018"/>
          <exon e_start="38161" e_stop="38427"/>
          <exon e_start="38558" e_stop="38685"/>
          <exon e_start="38829" e_stop="39026"/>
          <exon e_start="40986" e_stop="41661"/>
          <exon e_start="41749" e_stop="41776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTTGTAAGTCTCATAAACCCTAACTAGTTTTTTTTAGTTTTTTTTGCTAATTTTGACTTTTAATTGCTGAAAAATAGTCTTATTGAAGTGTTTTTTTAGGTTTACTTGTTGTTAATTAGCTTCACTTGTGATAATGTATTTAAAGTTCGTGATGAATCGTTTTGAATGTTGAATTTCAGCTCATTTTTGTAGATTGTTTTGTTTATAATAACGATTGATTTTTGGTGATTAACTAGCTGAAATTGATTAATTTACAATAAACTAAACTGAATAAATTGAAGTTTCCAGGCAGTAACTGAGGTTTGGTTTTTCATGGAGCAAGGTTATTAGTTTTTGGATAGTGGGGTTTGGAATGATTAATGTATAAATGAACTGAAATTGCAACCAATTAATGATTTTTAGAGTTTATTTGCTTTTGTTGTGATGATGTCTTCATGATTATGATCATTCTTTTTTTGGAATATGTTCTTATGGGTTGAGTTTGTGGGATGAATGTAAAGTTCAACTCATTTGCGCATGTTCTTTTTATTTATCCCCGTAAGACTGATTTCGGTGTTTAACTAGCTCAGATTAGTTAGTCTACAACTACATGCCAAGTGTAATCCGACAAAATGGGATCTAGGGAAGTAAGAGTGTAAGCAGACCTTATCAGTTATCCCTACCTTACCACAAATGAGATTTGGGATAAGATGTGTATCCGTCATCTCTAGTGGTTCACTATCTGAGGAATAATTCATGGAAGAAGCCTATAGTAAACACATTCGCTAAACATATCTCAAGGTGGTATGAAAGAAGAAATAAATGAAGATTAAAGGCATGTGAGAGTGATAAAAACAAACCAAAAGTTGTTAATGGGGAAGAGTTCAAATTGAGAAATAATTTCATGTGTTAAGTATGCACAAGAAAAATATGTCACATGCGGTGAAAACTTTGCACTAACCGCATGTGCCACAGTTTTCCCAAGTTAAGAGAATCTAATACTAGTAAAATATAACTCAAACAAATTCAAACCATCAAAAAATGGGGAAGTGAACATTTAAACGAATAATATCGAGGATGTTACATACTAATAAAATGAGCATAATATTTGGATGATGAATAATATCTTTGAAGTGCTGAATAATGATTGTATGACTATCACTCTGGGGAAACAAATTATTCTGAAATGCTTTGTCACTGAAAGTGAATATGACGTCATTGAAATTTGGAGGATCTAAGTAGATTCATGCTTTCTTACATCATATGTTCTTTTCTATTGTAATGTTGGTTTCTATAGCATCATTATATTGCTCAAATTTATTTCACAGTTCTAACCACATAACCTATTTTCAGAATTTGTATTTGTTTTGTCCCACAAAATAATGAACATTAAGACCAAGCATGTGCATGTCATACGTTCGGTAACGTGTACATTTTGCCTTTTTTTTCCTTTTTAAAGAGGTCATGGGCTTCGTCATTATTAATACAAAATGGACAAAGACACGTGAATGATATGCTCTAGTAAATATGCTCCTCATTAACCATAGGCAGCTCTAGTAACAGTAGATGTTTAGAAGAAGGAACACATCAAACCAAGATATCAAGAAGAAAAAAGTGACCAAATCCGTCCCTAAATATTTTCTTTCTTTATTGTCTATATATGTATATATTTTATGACATCCAATAATAATAAATGTTAGCGTAGATGGTCAAGACCTCATAATTTATTTTTGATGAAGAGACCTCATAATTTATTTTGTGAACACGATTCATACGTTCTAGTGTATTTAGCCATTGGTTGATGCATAAGACAAAAATTCTTGTTGTTTGTCGTTCACCACATGTGAAAATCAAATTATAGATAATGAAAATCAGATTATAGATGACTATTGAACAGATGAAGAACTACAAAATAGATGTAAATATGATTCTTTTACTTATCCTCCGTAGATGCCATAAAAATCAAGTACTCAGTTCAAGTTTTTAAAATAAATCATTAGAAGTAGGAAAACATTAGCTAGACTTAACAGTTTAAATTTTTGCTTCTTCTTGAAGGACTTAGTGTGGGGCTTCCATCGTTTTTTGTGAGAAATCTCCTGAAAATGAAGGTGAAATTGGCATTGTTAATAATACCATGTTTAGGATAATGTAAGGTGGCAACTATTCATTGGGAGAAATTATTGTCAAAGCGGTTTCTTTTCTTCCGTTGGCTGCATTAGGTGTCTTTTGAAGTAGGTTATAGGTGTCTTTTGAAGTAGGTTATTTAGGTTAGGGATATTTAGGTAATAACTTTTAAGTTTTTGAGTTCATGCTTTCAGTATAATATAGATCGGTCTCTAACCATATTTTTACTTGTGATCAAGCCATAGATACCGGTAAGAAGAGAAATAGATGATAAAAATGATAATTATAATTTTTTTTTGTATAACAAGCTGTTCGTTTTCTATTTAATTCATAGAAAATATATGTTCTTGGGAGTCCCTGATGGTTAAATACAACAAGATTCACCATGACTGCTACTTTAGAGAAACACTTGAGTGAAAGCCTATAAAATTGCATCTGTAACTGGATACCTACATTGAAAACCATCGTTCACGCTTCGATTTTGATCATTTTGGACTAGCAGCACTATCCTTGTATACTAGACAGGCTACTGTGATCATATTCTCTCTGCTATGATCAATAATGGGCTCAGAAAGCAGCTCTAATATTAATTGCAATAAACTAAACTTGCAATCTATAGAGAGAAAAGGAAAAGTTCATTTAATTGGTAAAATTGTGTAAAGCTCTCAGTACAATAATTCAAAAGGGAGATGATACAAGAGAAAGGGATTAAGAGGCAACTCCATCAACTGAGTTTTGTTTACCCAATGATTGATTTCATGCCAGAATGAATCGAGGAAACAAGGATGTCTATAATGTCAACAATCCCTCCACTCCTGCAGGAAGGTGAAAGGAGAGAAACTGGGAGAGGAAGAAAAGAGGAACTTTACCACTCCTCTGTTCTAATCTATGTGAAGGTGTTTGACTGTGCTCGACGTTTAAGAATGAAAGGAAGACTTTTGAGACTTGTTGTTCAAAGTAAGCCATTGTTAAGGGTAAAATGTGAAATTTAAAGTTTAATTGTTACTAAATATAGAAATATGTCTCTTTTTGGGGCTTATTTTAAAGGAAAGAGTGTCACATTAATTGGGACAAAGGGATGCATTTTCTGTCCAAAATTAAGATGTATATACTTAGATGCAAGTGGCACCATAGATCTGGTACTACCAAAAGGTATCCAATTAATCCATGCTTGGCCTCCCATTACAATGCCTGTAAGAAATAATTGTTCTTTCCACCTCCACAACTAATTGTCGAACTATTATATCTATCTTTATTCCCTTAAATGTGAAACGAATTACACAGACTATTTGGCGCTACTTTTTTCCTAGATATATTGAAGACCTAGTTTCTTATATTTGTGGGAAGCATTTGGAATTTTCTATAAGAACTATATCATGTTCGAAAACATTCTTATAATTTTCGACAAGATTGCTGAAGGAGTGTCTTATCTTTTATGTATTCTTGACTAGAGGAGTTTAATAAAAAGAAAATAGAAAGGAACAAAGAAACGTACAAGTGTATAAAAGGAGTTGGGGCAAAGACATCAGAAACATTTAGACCTACGATTTCATCCTACATGTTATGGTTTTAGTTCGTTAGAGGTTTTAACATATTAAATCAGCAAAGTTGTGACATACATAAAGTGCATAACATAAAGATGAAATTCACAATTTGCTGATCTTTTGGTGCAAGGGAACTATTTTTTACACTATAAGTTAGCTGTTAATTTCAATATTGGCTTCTTCTACACCTTGTTGTTCTTGAGTATAATTCTATTTTCACAAACATATGTCAGAACTTATGCTGCAATTAAATATATTCAGGTTGTTTAACTCTTGTACAGCTTGTTATTCTTCTGAGGCATATTTCCTTCTCCTTATTTGCTAACTTGTGCTGCAGTTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTGCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAGGTTTGATTTTTGTTATTGAAAATTCCTTAATATAATGTTAAAATTTCTCTTTTATATATTTTTGGGTTGAACACAACCACGTTGACATACTGAGTTCTGGGTGTAAAATTAGACATGGAGAAGACCAATTACAAAAATCTGAGAATCTGCTAGCAGAATCACAAGGCTTAGTTGTTCTTAGTATTATGGTTTTATCCATTGGAATTGCACAGCAGAATTGTTATTACTGTTATTTTTTTTTAAAATTTTCAAAGATAAATCAAAAGCTGAACTATATGATCTTTTTGCATACTTCGTCTGCTGATTGCTTTTTGGTGATGGAATAGTTAGGCTGGGTTGTGGATGAGTATATCATAGTAGATTTTCTGATAGGATCTTAACTCCTTGGCTTTTGTTTTCTATAGATGATCCCTTGTATTAGAAGCACGGGAAATAGGATCGATGGTATATAGAAATATTAGGAACAGCTTTTCTGAATCATTTGAATATTCCTTTTATGGAACATAGAACTTCTTGCAGTGTATGTAGTTTTCTTAGTACTTTTATCATATGAAGTGAAAATAACGTTTTGCGATAATGTATTTGAGTGTGTAAAATTAAATACTACTGAGTTTTACAAAAATAATTCTTCAACGGAAGCCATTTATTTTTTTTACATATCTGGCATCTTACTTCTCCATCAAAGACTTTAGAGAACTTTAACTTTTTCATTCTGTCTCTCGTAGTGTACTGTTCTCTGATGTATGTAATTAGCTCACTGGCAAGTAGCACACCTAGTCTTTGTTTGACTTGTTTAAAAATCATGATGTATCATCAGTTACGGTGAAGTGTCCAAGTTTTACTGCTTTTTGCTATTTGCATTGCAGAGTCTTAAAACATTTCAGTTATTCCTGGATTTCTCCTGTTTATCAATGGAAAATTCAACTTAATCAACTATGCCTCAATCAATAAATGAAACCTCTATATCTAACCACTCCAACTCAGATCCAGAAATCAGATTTCAAAGAAATTCATCATAACTCAACTATAGGATTGCTGTTAACCAAGAGTAATCCTCATTTGTCCAGACAGGCGACCAGCTATTATGCTTTCATTATGGGAAAAATTGACAATTAATTAAAGGAAGGAACAACTGAAGAAAAGACATCCTTGTCAGCTTCCTCTCCCCAACCCTTGCCTGAATAAGACAAAAAGTTTCTTGGAGAAAACTCTGAATATTGGTATCCACCTCCTTTCTCCTAATTTAGGATGCTCTATTTCTAGACATATAGGGGAATACTCTATTCTAGTGGTCGGTGTCTGGTTGCAACTAGTTTTAGATGTTTATATGTCTTATTTGATTTAATAAGAGCTATCCTTGAGTGCCCAATGTGATTTAATCTACGCTTCGGCATTTCAGGTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAGGTGCCCTTCATCACCCTCTTTTCTTTTTTACTTGCAAATTCTAGATTACCTGTCAGGAAAAAAAGTGTCATTACAGATATTTTGCACTTCAATATGTTTGCTGGACCTGCTGACTGATATATGTGTCTGCTTATTCCTGTAGGTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAGGTATATTTTTACAAGCTTGATATACTATCTTCGTAGGTTAAGGATAGTCACAAATATGATATTTTAGACTTATAACTGTCAGATGTTCTGTTCTTGATATTTGTAATATTCTAAGTAATACTTTCTGTAGATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAGGTACGGGGTACCCAGTTCCTTAGTGTTCTTTTTCCGACTCTGATTTTCATTTTGCTACGTGAACTTGGTAACTGCTTCATATTCAATTTCTTTCCTCTTACTGTATTTAGTATTGACACATCTTCTGATGGGACACAAAACAGGTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGGGTGAGTACTATCTGGACCCCTTTATCCTCAGCTCTTGTCTTGCCATGCTGTTTAATGATCCATCTAGTTCGTGAGTTTCTCATCTTATATGTATTGAGCTGTCTTACTCACTTTTACATGAGACTGAACAAGTAAATACTTAATAAGAGAGTACTGAAATTAGAATCTTTACAACTATATGTGGATGTGCTGGTGACATGTACTTAGGAGTATATGCCTTTTTCTAGGGCTAACCCATCGGTGGCCCCCTAAAGTTGGCATCAACTTTCACTTAGACACCTGAACTAGACTTTGTTCATTTTTGACATCTCATGTGAGGCTCTGATGTATCATTTAACACTTTTTGCTTTTTGCTGATATGGCATAGTGAGTGTGACTCACTCATTAACAGCGCGTCAGACTCTTTTTCAGCCAATTTTTATTTTATATTTCCTTCTTCTTCCCCATTTTTTCAACCACCATTTTCTCAAGTTTGAACTTCTTCCATGGTGAGATATATTCGATGATGCCACAAACGAGGAATCTAATTTCAAATGTCAGAGCTTTCTCCAAGATTTCCCAAGGATGATGCCCTTCTTCCTCAATTTAATTTGAGGGAAAAAGACTGAAATTTGAAGAAAAAAAAAGAAATTTGGGGAAGAATAAAAAATCATTAAAAAATGAGATAATCTCCTTAAAAGAAACTTAATAATGTGATATGAACACGTACACATTTGTATTTTTAGAAGTTCATTGGATCTTAGATTTTTTCTTTTTTAAGCAATAAAATCTGTAGAATTTTCTTTTAGCAATAAAATTTGCGGAGCTGCAATTATTTGAAAAAATTTGAGTTACACAAGTTCACTGAAGGGGTGTGTGCAGTGAGAAGACCATGAATGGGGTGGGGTTGGGGTGGGATATGCTTCTCCTAAAGATTTTTTAAGGTGATTTAATCCTTTTTAATATTATTTGGGAAGAAATGCCACGTGTCATCGATCCATTAGCCAATTTTTCTAAAAAAATAATAGATAGTTTATTATTTTGAAGAGAACGACAAGTGTCCTCATTTAATTTGACACTTTACACATCATCCGCGAGTGGAACACACTCACCATCATATTTTTGTTGAATGTAAAAAAAGTGCTAAATGACGCATCAGGGCCTCACATGAGGTGTCTAAAATGAACAAAGTCTAGTTCAGGTGTCTAAGTGAAAGTTAATGCCAACTTTAGGGGGCCACCGTTGGGTTAGCTGCTTTTTCTAATGAAAAGAAGGAAAAGTTAAGGATTTACAGTGTCAGGATCGCGAGAAGGGAAGGAGAGATCACCAGCCTGACCCTAGGAGCTCACATCTTTATCAGAGTATATGCCTTTTTTCTAATGAAAAGAAGGAAAAGTTTAGCATTTACGGTATCAGGATCGCGAAGAGGGAAGGAGAGATGACCAGCCTGACTGTAGGAGCTCACATCATTATCTCTAATTGGAAGAAGGAAGTGACCAACTGGAAGTAGTGCTTTCAAATCCAATAAAAGGGTATACTGCTCTTCCAGAAATAAGAGGATGGAGGAAAGAGTGACTTCATAGATGTCTTAATACAAGTCTTTGCTATGTATGCATCGAATTAAAAATGTCAGTCAATCTGGTTCGCCTTAGTATATATATATATATATATATATATATATATATATATATATAACAGTAACAGATTCCCTTTTCTCTTATCCTTTTATCGTCCCACCGCACCCCTGCCTTCCACACCGCTATTGATATCTTTAACCTGAGGTATTATAAATTGAACGCAGTTGTTTTATTGTCGGATAAGAATTTGTATGATTGGTAATCCTACGACTCTGTGATCGTTGCTTTTCTCTTTTTGATGTGACCTCATTATTATTATTTTTATTATTTATCCTACCTGATTATATGATTAGTTGACATTAGTTATCAGAATTGTTTTTGTTTCTTATACTCCTTCATGCAGTGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAAC-AATAGATTATTATGTGTTTTTTTTTAATTGCCTTTTCATATTCATAGTATTTTCTGACCTTACTGTATAACAAAGAGTTTGAACTGAAGGGGTGTTTTGACTCTATGCATCACAGAAGCAAACAGCAAATAACAAAACTAA</genome_strand>
        <mrna_strand>GAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTCCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAG..............................................................................................................................................GTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAG..................................................................................................................................ATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAG...............................................................................................................................................GTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAAATAGATTATTATGTGTTTTTTTTTA.......................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315185" ref_strand="+" ref_description="SGN-U315185        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: CID9 | RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain. | chr3:4849795-4851608 FORWARD | Aliases: MOA2.5, CID9(evalue: 3e-96, score=349) genbank/nr: gi|62867578|emb|CAI84654.1| hypothetical protein [Nicotiana tabacum] (evalue: 7e-108, score=394)">
      <seq>aattcctctgccttctgttattgaaatttgttgctatatatataacaaaaaccctattgcttttttgctttctctctcttcttttctctctcatcaccatcttcctaaatgagtatttatcaataaacccattatgctctgtgaattcctcatttgattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcaccaaacactgataacaccagcaataattctgaatctaatggtgttaaggattcatccgattcaatcgcaaatgcgaaatcggagtttcatatgcatgatattgctgatatgttgaagaaacttaagctgaatccacaggctaaggagttttttccttcttcttataatcgtggtactgttggtgctggtgatcagatgattctcagtaactttgtaccagctaacaagactacggggggtgatggttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattctcgtcttcgttttgctttcgtggagtttgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctcaattgaaggtcctaccttcaaaaactgctattctacccgtgaatcctacattccttccaaggtcagaggatgagcgtgaaatgtgtgccaggactgtctattgtacaaatattgataagaaggttactcaggctgatgtcaagaatttttttgaaaccagatgtggcgaggtttctcgcctgaggcttttgggagatcacgtgcactcgacccgcattgcttttgttgagtttgtaatggctgagagtgcaattttggctttagactgttgcggtgaggtattgggatcccagcgcatcagggtgagtccctcaaaaacaccagtgaggccccgacttccgcgtgccatgatgcagtaagccaatgtgtgtgctcatggacctggagaaagagttcaaagacaaaaacccccctcggaagacttgaggtcaccatgggaaaaatcgaaacaaaaattctgtttcagtaatctccatgttctctcttttcatgttcctttctttactgcctacagtaacttatgctaccagaaaacaacgtagccatcgagccaacgatttttaaattggaatttccgcacttgtactacttttaccttgatcgatcgttcctctatgaatctcttgatgttcctctatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="48095" stop="56381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48395" g_stop="49041" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49042" i_stop="50790" i_length="1749">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50791" g_stop="50901" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="758" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50902" i_stop="50987" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50988" g_stop="51032" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="803" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51033" i_stop="53048" i_length="2016">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53049" g_stop="53121" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="876" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53122" i_stop="53199" i_length="78">
            <donor d_prob="0.306" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53200" g_stop="53312" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="989" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53313" i_stop="53497" i_length="185">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53498" g_stop="53557" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="990" r_stop="1049" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53558" i_stop="53737" i_length="180">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53738" g_stop="53785" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1050" r_stop="1097" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53786" i_stop="53855" i_length="70">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53856" g_stop="53924" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1098" r_stop="1166" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53925" i_stop="54789" i_length="865">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54790" g_stop="54851" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54852" i_stop="55741" i_length="890">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="55742" g_stop="56080" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1229" r_stop="1567" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1568" polyA_stop="1583"/>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U315185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1567</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48395" e_stop="49041"/>
          <exon e_start="50791" e_stop="50901"/>
          <exon e_start="50988" e_stop="51032"/>
          <exon e_start="53049" e_stop="53121"/>
          <exon e_start="53200" e_stop="53312"/>
          <exon e_start="53498" e_stop="53557"/>
          <exon e_start="53738" e_stop="53785"/>
          <exon e_start="53856" e_stop="53924"/>
          <exon e_start="54790" e_stop="54851"/>
          <exon e_start="55742" e_stop="56080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</genome_strand>
        <mrna_strand>AATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG.........................................................................................................................................................................................TCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAG....................................................................................................................................................................................GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAG......................................................................GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335021" ref_strand="+" ref_description="SGN-U335021        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctctctcatctccatcttcctaaatgagtatttatcaataagcccattatgggggggggattgctcattccattgatttttcataaagaataatcaaattggtgaaaaggggttgctttaatttattgaaattgtagaattttagtgttttcttggtatttctgaagctttttctgttctgggtgtgtttttatttttttgtgggttttgagtattttcatcaatggctgctggtgctaaagaagtgtctggtgagacaacagtggttgaagctcctgctgttcagtctttatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="48180" stop="49078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48480" g_stop="48778" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U335021" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48480" e_stop="48778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCAC</genome_strand>
        <mrna_strand>CTCTCTCATCTCCATCTTCCTAAATGAGTATTTATCAATAAGCCCATTATGGGGGGGGGATTGCTCATTCCATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335020" ref_strand="-" ref_description="SGN-U335020        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: CID8 | RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins. | chr1:20032930-20035115 REVERSE | Aliases: F22G10.7, F22G10_7, CID8(evalue: 5e-32, score=134) genbank/nr: gi|62867578|emb|CAI84654.1| hypothetical protein [Nicotiana tabacum] (evalue: 4e-38, score=161)">
      <seq>gggggtgatgttttcaaaacaacagaaggagaggcagcaactttaaccaggggaaaaggaggatgaacaatagagcttataaggctcaaagagaagatagcatcaggcgaacagtatatgtttctgagatagatagcaatgtcactgaggagcaacttgctgctttgtttagtgcttatggacaagttgttgactgccgaatttgtggtgatccacattctcgtcttcgttttgctttcgtggagtttgctgatgagtactctgcaagagcagcactttgcctttgtgggacaattttaggtttctctctggatgtgctttacatgtttcttgttgctctcagagtgcatcatttacgtacccggtctttaactatacgaactcaaccatggttgagtgcgatattgacgtgaggtaagtgtatgtagaagacgtgtattatgcatttattgatttgatatatagaactcgagtgatgaaatgtgattgcaatcttcaataaccccacaaagaagtcttggttattaaatgggtatgcagtttgggtccaagctcctaccacaaacctaagttttaagattcgcctatcacaataaatatttttagtaaggacgataaatattttgagacggaaaaacttttgcccaaagtcattttactttttaggtgatgaatgtaaataaaatgtttggactccaaaaaggaaaaataggaaagaagaccagtattttagtgaatatgtataatgtacccttaataattaatttcattttggtataaaaccanaaatactatttgaaccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="48712" stop="56926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49012" g_stop="49041" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49042" i_stop="50790" i_length="1749">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50791" g_stop="50901" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="140" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50902" i_stop="50987" i_length="86">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50988" g_stop="51032" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="185" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51033" i_stop="53048" i_length="2016">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53049" g_stop="53121" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="258" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53122" i_stop="53199" i_length="78">
            <donor d_prob="0.306" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53200" g_stop="53242" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="301" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53243" i_stop="56124" i_length="2882">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56125" g_stop="56627" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="806" r_length="505" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="807" polyA_stop="821"/>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U335020" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335020" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49012" e_stop="49041"/>
          <exon e_start="50791" e_stop="50901"/>
          <exon e_start="50988" e_stop="51032"/>
          <exon e_start="53049" e_stop="53121"/>
          <exon e_start="53200" e_stop="53242"/>
          <exon e_start="56125" e_stop="56627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGTGATGGTTTTCAAAACAACAGAAGGGTATTGATTCATTTTTTCAATTCTCATTGATATTATTCTTTCTTTTGTTTGATCGTTGAAAATTTCGATCTTTTTGCCTGTTTTGTTATTTTGGGTCGGTTGATGATTTTGCTATACCGTGACTAATTGTGGTGAAATTCATATTTGTTTTTTTTCTGTGTTAATCTGTATGTGTTCGTTTTTCTTTTTTGTGTGCAAGTTTTCCTTTTTAAGCATTTTGTCTTTTGGTTGAATTTGCTGTATTTCTGGATATTATAGCAAGGAAACTTTAACATTTTCTTGTTAAGAAACTGATCTTTGGAGCTTTTCAGTTATTTGTTTAGGTAAATGATCATATAAAGGAATATAAAAATTGCTGAATGTATAAACTGGATTAAGCAGTTATCAAGGAAATGAAGGTTTTATGGTCAAAAATGGATTTTTAGACCTGGTTTATTAATTGGGGATTCCTGGCATTCCATTCACTAAAAGTGGAAATTTGGTATTCAGTTAGTTGAATGGGATCATTGAATTTTGGTCTTTACTGATACATAGATGGTAAAGTGCAGATGAGTATAATTTGTGTAATGTATGACGTGAAAATTTGCCGTACTAGTGTGTGATTTGGAACTTTCAATTGCTTTGGTTTTTCAATGATACATAAATAAGTAGAACTTTTGCTGTATGTGGATGAAATAGGGGATATTTTGTTGTTTTCTGATACTTGTAACCAAGTTTTTGTTAGTTCGTTGAATAAGCTGTAGAAAAGGAAGTAATCAAGTATGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGGAAGTAATCAAGTTTGGAGAAATGTTTAACTGAGCTTATGTTATAGTAATGCATCTTTTCCTTTTTCATTCATCGTAAATAATAATTTGTGAAGACATTAAAATCAATGTTCTGAAGTCAGGCACTAGTAGTAGCTGCTACTTTTCTTTCATTGTTTAAATTATGAAGAAGTTACGTAGTTCTTCACTAAGTATTTTTGTTCTCTGCCAATTTGGGTGGAAGAAAGTTTTGCATTGTGATTGGCATCAGTTGTCATGTAAAGAGATTGCTTGCGGGAAGCTAATGGCACATTGAATTTGCATCCGTCAATCTGGGAATAAAGTTCTAGAATACACTGACACAATCAGTTACCAGAAAGTAATATACAACAGTGAACTCATCCCACTGAAAATGAAGCTTACATCATTCTGTTGGAACTTGACTTCTGTACTTGTAGCATTCCATCACATTCAGTGCCATATTTTATGTTCTCATATCAGTATGGGGTTAACGGGTTTTAGTTGATTAGTTGAAATGTCAGTTTTGTTTGTTTGAGTCATAGAGTTGTCATCTCTATACTTTACTTGTTAAACTAGTGATATTGTTACTGTTTGATATTTACTTCTCTTTGGTTAATGGTAATTTCCTAATTGGGAATGCTTATATGTATTCATGTTAGAGTTGGTTGTTGCTCACGTTTCTTGAGAACATCAAGTTGATGACATACTTGACATTTCAGTTATGTCTTGAGAACATCAAGTTGATGACATAATTTGATCATATTTTATATGCTAACTAGAATAGTTGAATCACGGACAACCATCTCCTTTGACATTTCAGTTCTATCTTTGATTGGATCAATTTGGTCTTATTTTATATGGTAACTAGAATATTTGAATCATGGACAACCATATCCATTTTCTTGTTTTCCTTTTAGTATCTCCTAAACTTTCTTTTCTGTGTTTCCACAGAGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAATGTAAGGATAGATTCTCACTTATGTTTTGTGATATTTTTGTATTAGTACTCATTTGGCATCTTTGGTTTTGCCTTCACAATATGTAGGTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAAGTAAGTCACTTTCTTCTTCTTCTTCTACTACTACTACTTCATTGGAAAAGTTACTTTCTTCTTCTGAACATTGATGTGATTCACTATATTATATATTTGATGTTCTTAAGTGCATGTAATTTCAGTCATTTGGCGTAACTAAACTAGAAACAATGAATTCCTTTTCTCATCTGCTTGTGGAGTGGTAGCGTGATACATAAGTTTACATTTGTGTGCTACTTACTATCATACTTTAGCAGAACAAAATACTTTGCTTGGTAATCTGATTACCATATAAGTGTACTTCCTTTTTTGGCTTTAATTTGATTTTTATTTATCGTAATTGTGCATTATAGAGTCTCATAATACTTGACCATCAGATAATTAATAACCGGTTAATGAAATTGATGACATCATATGTGCATTAGTTATCTGGTCTTTTAAGGTAATATCCTTGACAAAATATTATATCTTTCTAAAGTTATATCAACAACATATTAAAGCTAGCAGAGGTGGATGTGGCATACCGATACGGTGTTCATCTGAACCTAGTACTTTTGGCACAGAGAATAAGTTTATACGTTAAAGTGCACGAAAATTGTAACAAATGGTAGCTATGAACTCATAATTCCTGCCTTGAACATAAAGAGAGCCAGATGATTAAAACAATGAAAACAAAGACTCCAAAGTAAAAGTGCTTAGAGCATAATGAAACAAAAAAAAGCTTCAAGATGAACACATTGAACTCAGTGTGATAGATATCTCTAATAAGCTGAAAAATAGGAAGTACTTAAAAGCTGCCAACTTTCTTATTCCTGCATGCTTACTCTGAACAACAGTGGAACTTTTATAGTTTGAGTTCTATGATATTTGAGACTTAAAAAATATTGTTAAAAAAATTGAAGAAAAATCATGAAATTGACTTACTAAGGACCTATCAAGCAGACTTTCCCATATACCCTTGACCTAGGAATACATCAGATAACCTAAACCTAATTAGCAGTTTACTGAATGGAAAAACATTTAAAAGTGAGCCAATAAAATGATGGCATTCATGATAACAATGTGACATAAGAATAAATGACATTTGTAATATTCTTACCTAATAAGAGTACAACATTCGTTAAACACTATATAATGGTGCATAAGCTTTCATTTTTCCTCATTGTGTACACATCTGCATGAAGACACCTATAGTGAATGTTGCTGACCATATTAAGGAGGGGGCTGGGATTTGTTGTGGATTACTGCATGACTATGGTTTCTGGTGAGTTATCACATGGGTCGTAGTGTGTACAATACTGTACATAGCTTTCTGCAGCCAGCAACATTAGTTACACTTAAAATTTGTTAAAGATAGAATATCATTGGGTGTAAAATCTTGCCAAATAGGAAGCTTTGTTGCCTTTTCTAAAGGAGGAATCTTGCCATGATGTTCAGTGAGAGGCTAAGGCTTGAATTAATATTTAATATAAGATGTGTAACATTTGATCAGAAAAATCCCCGATAGCCTCCTATCAAAAATTTATGTCATTGGTTCATGTGGTATGCTAACTTGTGTCAACCGACTTTAAGAGCTAGTGTACAGTTTGGTCTGTGATTTAGGCACCAATATAATGTTTTATTATGTACTTAGTACTTTTATCATATAAGATGCATCCACTGGCTTCATGGTGTCTTTCAAAAGGTGCTTCTGGTGAGTGGTTATGTTTGCATACACCTGTTCAACTATTCATTGTGGGACCAAAATCAGCCATGAAGTTTTGAATGTGTAGGAGGGCATTGATAGAGCTGCTTGTCTTGGGACTGTGAATGTGTTGTAATGAAAGTTCATGATGTTTATATCTATTTTGTCAGCTAATATCTAAATTTTGTGTCATAATTCATTTACTTCCAAAATTACAAAGTCCGCCTCATAGCTACAACAGATTTGTTAATCTAATCAGTCAATCAACCGGCTAAACCTCAAGCGCCGCCAGCATTTATTTGCTTACTTCGTTTACTTTCCTCTTCTCATTTTTGCTGCTGCCTTTCTAGGTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGTGTAAGTTGGATGTTTTGGCTTGAAATGTTCTTAAGACAGCTGAATATTCAAAAGCTAACATGGAATCGATCCTAGCAGACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGGGTACGGATAAATATTTTGCACCATGTTCTTTGTCCAAAAAAAAAAAAAGAACTTTTAACATTTTGTTTTTGCTAGTATGTGGATGATCTTGAGAAATAGTTTTATGTTATTCTATATCATCCTGGTAGAATTGAGGTCATGGATCAAAATGCTTATTCTCTATTCAATGTTGATGTTTTGTGCAGTCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAGGTAGACATTTTGATCAGAGATCTATTATTTTTTTTCTTTGTATGCATCATTCTGTCGGGCCCTTGTTCTGATGCACATTGTAGTAGTTATTATGCTCTGGCTCATATGCAGTTGTTTGTTAATAAGTATTTTTCTTGTAGTTTTATAATTATTAACAGCCAATTACTCTATTCTGAGCAGGTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAGGTCAGTATGAAGTTTAAAAATTTGAATGTTGGCTTAAGAAGTGTTATTGAACGATGCTCTTACTTTGCAGGTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATGGTATGTTTTCTTATCTTTGATGGAATGTAAGTGTTAACCTTTTGCATTAATTACCCTTTTAATCCTTCACACATGCATCTTGTGTTTGTTCCCATGCTGTATTTGTGTCAGGATATTTTGCATGTACCTACGGATTCAGATGTCATGATACAACAACTCTCTCCTTTTTCCTTTTCTTTTTTGCTGGTTACTTGTGTAATGTGATTATTGAATGATGTGTAACTCAACTTCCATTTAGTTGCCTCTGAATATACCTCTCTTCTTGCCTGCATTATTCTTTGGCCACCCTTTTGTCCATGTGAGTGCTAGTGAAGAAAGGAAAGTTTAATATATTACTCCTTCGGGTCCACCTTGTTGTCCTTACTAAAAATAGATGGTCCAAAATAGTTGTCATCTTAGAAAACCAATATATAATTGAGTACAAACTACAATCTTCTCATTTTGCCCTTAGTAATATTGTTATTGGAAGTGTACTAAACATTGACTAAATTAGCATAAAAAATGGAAGTTAAAGAGCATGTACACATACTGCAATATTGTGATTTTAATCTCTTCATTTATTTTTTTAACAATAATGAGGCTGTTTAGGTACTTATCATTTACACCAACAATCTTTTTATTTATTGATGAGAGATTAAATGAGAGAACATTTTTTGAAGAGCGATTAACATTCTAAATATTAAGGATCATAAATAAGGGTATGTTTGGCAAAACACATATTCCCTCTGGACCACTTTACTAGTCCCATTTTTTATTTAGATGCCCCTTAAGAAACTGTGTTTTGAATGCCTACTGGCGTTTTAGAACAGTCTCTTTAATATGGATTGACATTTGCAAAAAAATCTTATGTTTGCAAACTGCACAGGCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAGGTGAGCTTATTCACAACAAATGGCTATGGTCTCAGCTGATCCCCTCTAATTCTTTTCTGCAAAGTGTGTTTCATTGTTCATGTAGTATTGCATCCTTCTGAGATTGGTATATTCTCTTGGTTGTTTTCTAGGAGGCACCACATCAGATCATGCACTCTTAACTCAAAACAGACCTGCCATAACTTTTCCTCCTTTTTTTGCTGTGTCCAAATTATTATTGCGCTATTCCATTTTTTATACCTTTCTGATGTGATAGTCAAATAGTGAAATAATGATTACGACCTTAAAGATCAGAGTGTTGCATTCTCGATAGTTGAGATGGGAAGTTGGTAGTTATTAAGTCTCTTAATTGTTTCTGTTGCTTATTCAGGAAAAAAACTGAAATTGCTAATAGACATCAACCTGAGTTATCGCTAAATACATGGATATAACTTATGTTTAACTTGGTGCTACTAGAATATGAATCCAGTTCCTTTTTCATTACCCAAGTATTTGAAAATGCAGTAGTTGGACTTTTACAGTTATGGAAGATCGGTAACTTTTGTAAAATTCTTATGATTAAAATGTCCAACATACTTGAAATTGGAAAAACTTCATTTTCTTTTTCTCCAAACATTCTTTAGTTTGTCTGTGTTCAATAACATTTACGTTCAACCTGAGTGGTTTATGATGAAATCGCGATATGCAGATAATTGTTATCAATATTCAATAGCACTTCTAGTTATTACATTTCTATAAACAGAAACACATTTTAATAAGAGCCATCTCAATACTGAGGCTTATGCAGTTGATGACACAATTTTGAGATCTACAGGGCCTTGGATCCTCAGAGAGTTCATTCTATTCATTAGTCTTTTTTCTAACTTTGCAACTTTATATATATGTTGTAGGGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGAATCTCTTGATGGTTGGGGACGCCAGTGCACAATTCATTTGATCATTTCTCTCTGGATGTGCTTTACATGTTTCTTGTTGCTCTCAGAGTGCATCATTTACGTACCCGGTCTTTAACTATACGAACTCAACCATGGTTGAGTGCGATATTGACGTGAGGTAAGTGTATGTAGAAGACGTGTATTATGCATTTATTGATTTGATATATAGAACTCGAGTGATGAAATGTGATTGCAATCTTCAATAACCCCACAAAGAAGTCTTGGTTATTAAATGGGTATGCAGTTTGGGTCCAAGCTCCTACCACAAACCTAAGTTTTAAGATTCGCCTATCACAATAAATATTTTTAGTAAGGACGATAAATATTTTGAGACGGAAAAACTTTTGCCCAAAGTCATTTTACTTTTTAGGTGATGAATGTAAATAAAATGTTTGGACTCCAAAAAGGAAAAATAGGAAAGAAGA-CAGTATTTTAGTGAATATGTATAATGTACCCTTAATAATTAATTTCATTTTGGTATAAAACCA-AAATACTATTTGAACCATAC</genome_strand>
        <mrna_strand>GGGGGTGAT-GTTTTCAAAACAACAGAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT......................................................................................GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT..............................................................................ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCTCTGGATGTGCTTTACATGTTTCTTGTTGCTCTCAGAGTGCATCATTTACGTACCCGGTCTTTAACTATACGAACTCAACCATGGTTGAGTGCGATATTGACGTGAGGTAAGTGTATGTAGAAGACGTGTATTATGCATTTATTGATTTGATATATAGAACTCGAGTGATGAAATGTGATTGCAATCTTCAATAACCCCACAAAGAAGTCTTGGTTATTAAATGGGTATGCAGTTTGGGTCCAAGCTCCTACCACAAACCTAAGTTTTAAGATTCGCCTATCACAATAAATATTTTTAGTAAGGACGATAAATATTTTGAGACGGAAAAACTTTTGCCCAAAGTCATTTTACTTTTTAGGTGATGAATGTAAATAAAATGTTTGGACTCCAAAAAGGAAAAATAGGAAAGAAGACCAGTATTTTAGTGAATATGTATAATGTACCCTTAATAATTAATTTCATTTTGGTATAAAACCANAAATACTATTTGAACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344146" ref_strand="+" ref_description="SGN-U344146        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G17120.1 | Symbol: None | amino acid permease family protein, low similarity to SP:O43246 Cationic amino acid transporter-4 (CAT-4) {Homo sapiens}; contains Pfam profile PF00324: Amino acid permease | chr1:5851946-5853948 FORWARD | Aliases: F20D23.19, F20D23_19 (evalue: 8e-67, score=251) genbank/nr: gi|15220035|ref|NP_173155.1| amino acid transporter -related [Arabidopsis thaliana] gi|25320828|pir||A86307 amino acid transporter homolog [imported] - Arabidopsis thaliana gi|5734765|gb|AAD50030.1| Very similar to amino acid transporter [Arabidopsis thaliana] gi|18176204|gb|AAL60003.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|21436167|gb|AAM51371.1| putative amino acid transporter protein [Arabidopsis thaliana](evalue: 6e-65, score=251)">
      <seq>aatcggccgaattgatagctcccaaatcccgttatggcaacggaaattggtcggattcgattaatactcagatgacaatctcagagctttctcaacaactcaaaattcccttaaattcttccgaaaaattcagtctcacttctcctccttcagcctcaacaaaaatggagtctttaccaaaaatccaacaaccccataagcgttattggcgttttagcaaacaagatttcttccccgaaccgtcttttcacaattttggatcctacaaaaatgccctttctcaaaccccaaatcgtctcaagaatcgtcttttttcacgttcatcagataccagtgaattgattgagcttaagaaagaatcggaaaatgaaatgaaattatgtttgacttggtgggatttaatttggctgggatttggatctgttgttggttcagggatttttagcattacgggtcaagaaacccgaaatgatgctggacctgctattgttctttcgtatgcaagttcgggtttatctgctttgctttctgtgttttgttatacagaattttctgttgatattcctgttgctggggggtctttttcgtttttgagaattgaattgggtgattttgttgcatttatagctgctgctaatattctattagaggctatggtgggtgctgctgggttaggacgttcatggtcgtcttattttgctagtattattaataataacccggattttttgaggatcaagattgattcttttgtagaagggtttaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="71307" stop="69946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70246" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="770" r_length="764" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U344146" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCATAGCTCCACAAATCTTGGAATTCCAACGGAAATTGGTCGGATTCGATTAATACTCAGATGACAATCTCAGAGCTTTCTCAACAACTCAAAATTCCCTTAAATTCTTCCGAAAAATTCAGTCTCACTTCTCCTCCTTCAGCCTCAACAAAAATGGAGTCTTTACCAAAAATCCAACAACCCCATAAGCGTTATTGGCGTTTTAGCAAACAAGATTTCTTCCCCGAACCGTCTTTTCACAATTTTGGATCCTACAAAAATGCCCTTTCTCAAACCCCAAATCGTCTCAAGAATCGTCTTTTTTCACGTTCATCAGATACCAGTGAATTGATTGAGCTTAAGAAAGAATCGGAAAATGAAATGAAATTATGTTTGACTTGGTGGGATTTAATTTGGCTTGGATTTGGATCTGTTGTTGGTTCAGGGATTTTTAGCATTACGGGTCAAGAAACCCGAAATGATGCTGGACCTGCTATTGTTCTTTCGTATGCAATTTCTGGTTTATCTGCTTTGCTTTCTGTGTTTTGTTATACAGAATTTTCTGTTGATATTCCTGTTGCTGGTGGGTCTTTTTCGTTTTTGAGAATTGAATTGGGTGATTTTGTTGCATTTATAGCTGCTGCTAATATTCTATTAGAGGCTATGGTGGGTGCTGCTGGGTTAGGACGTTCATGGTCGTCTTATTTTGCTAGTATTATTAATAATAACCCGGATTTTTTGAGGATCAAGATTGATTCTTTTGTAGAAGGGTTTAATTTG</genome_strand>
        <mrna_strand>CCGAATTGATAGCTCC-CAAATCCCGTTATGGCAACGGAAATTGGTCGGATTCGATTAATACTCAGATGACAATCTCAGAGCTTTCTCAACAACTCAAAATTCCCTTAAATTCTTCCGAAAAATTCAGTCTCACTTCTCCTCCTTCAGCCTCAACAAAAATGGAGTCTTTACCAAAAATCCAACAACCCCATAAGCGTTATTGGCGTTTTAGCAAACAAGATTTCTTCCCCGAACCGTCTTTTCACAATTTTGGATCCTACAAAAATGCCCTTTCTCAAACCCCAAATCGTCTCAAGAATCGTCTTTTTTCACGTTCATCAGATACCAGTGAATTGATTGAGCTTAAGAAAGAATCGGAAAATGAAATGAAATTATGTTTGACTTGGTGGGATTTAATTTGGCTGGGATTTGGATCTGTTGTTGGTTCAGGGATTTTTAGCATTACGGGTCAAGAAACCCGAAATGATGCTGGACCTGCTATTGTTCTTTCGTATGCAAGTTCGGGTTTATCTGCTTTGCTTTCTGTGTTTTGTTATACAGAATTTTCTGTTGATATTCCTGTTGCTGGGGGGTCTTTTTCGTTTTTGAGAATTGAATTGGGTGATTTTGTTGCATTTATAGCTGCTGCTAATATTCTATTAGAGGCTATGGTGGGTGCTGCTGGGTTAGGACGTTCATGGTCGTCTTATTTTGCTAGTATTATTAATAATAACCCGGATTTTTTGAGGATCAAGATTGATTCTTTTGTAGAAGGGTTTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="93481" stop="94634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93781" g_stop="94334" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93781" e_stop="94334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGTTAAGAGAGGGTGAGGAAGAGGAGAATGAACAAGTATAGAATGAGGGGTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCTGAATCTGAGGATGCTTATGATATTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="96171" stop="94814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95871" g_stop="95114" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95871" e_stop="95114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAAGAAGGTCTGCAGGAAACACATCTAAAAATTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAGACAACCCTTACTAACCATTTTCTTAACACGAAGAAAGGAGACAATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGCAGATACATATGAAAATGTGGA-GCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATAACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="95768" stop="94838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95468" g_stop="95138" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95468" e_stop="95138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGCAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="96760" stop="95448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96460" g_stop="95748" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96460" e_stop="95748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAACTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313135" ref_strand="+" ref_description="SGN-U313135        Tomato 200607 #1 [7 ESTs aligned]">
      <seq>gtagttcaagtgtttgtaccttttttgtgtgtgtatcaaacaatactatggcaactttggtacctgaggttgagaatagggcatgtatcaatgggtgcaataatgatttgaccaattttgatcactctcaaatagattgctcccttctcatgtcattgcttgatgactcgcaaggcgtagacgatattgatcatgataacgagagattatcgagtgtgattagatctctcgaggctgaaattgatgatcatcacctgataaacgttgatcacgattcatttcagaatactcatcaaaggagtactaccaacgatgaagattggcagtcgtgagaatctgatcaaagtcaaaatcaaagttaaaatttattcgaatcgagctgtcttgatttgagttggatggatatagagatggatattgctccttctaataccattagtgatgacatgatgaacttttggtacatggacaatagttatggacaagatcatgatgtgtatgaatatggttatggtactttttcccttagaggaaaatgatcacaattcatcagctttaacaacacaagcctaagtcgaaacttcaatatggacttcggaaattaaaaaaaaaaacacaaggctaaagtttgtgccaaaaaattataacttctattgtaattgattagctagaggtaaattgtacttgaattagatgtattagtgaggaggaactcaataaaataacaacacgtatcatgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="106374" stop="107714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106674" g_stop="107414" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U313135" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106674" e_stop="107414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCAAGTGTTTGTA-CTTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTAC-TTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATT-AAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</genome_strand>
        <mrna_strand>GTAGTTCAAGTGTTTGTACCTTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320907" ref_strand="+" ref_description="SGN-U320907        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:At1g53590.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81628.1); contains InterPro domain C2 domain (InterPro:IPR000008) | chr3:4904369-4908000 REVERSE | Aliases: MIE1.9(evalue: 6e-90, score=328) genbank/nr: gi|9294381|dbj|BAB02391.1| gene_id:MIE1.9~unknown protein [Arabidopsis thaliana](evalue: 5e-88, score=328)">
      <seq>agacacttgttgagcccaatatgctggtagtacacatggagaaatttgtttcaccccaacaagaggaaagctggttttctatcgatgcaaaggagcccattgcccatgttattttggaagtccttgaagcggaagacttaaagccagcagatttaaatggactctctgatccatatgttaaggggcatcttgggccctacagattcaagactaggactcagaagaagacattagctccacagtggcaagaggagttcaagattccagtctgttcatgggagtctcctaacgatatgctcaacatagatgtttgtgacagagaccatttttctgcggatgaaacattgggagattattccataaacatctgtgattatagggatggccagaggcatgatatatggttgtctcttcataatgttaaaatggggagactacgtcttgccataactgtagttgaaggcagcgaaaagtttacagagcagtcatccgagcaggcaaaaacggacatcaaacaggagagcaattctgatgagatggatacagccgaaagagggtccttacccaccgagatggataagcaatcgtcaaaaattgcagatacatatgaaccaattaacatagaagggcagaaggagactggcatgtgggtacaccaccctggcagtgaagtaccacaagtttgggaacagagaaagggaaagagtcgggttatcgatggagaagttcatggttctgatgctgattccatgggaggaagtttcaagttaagagggggaggatctactcggggtgatgattctgatgaaggcagtggatctaagaagtcgaatctaattaacaggggtataaataagatcgggtccttcttccacaaaagtcagaaaagcgaggacaggtctataaatcttggagatcctgttccatctccgcaagctaatctaaaggcagtgagtgcaaaggggatcggtgtgaatcttattatgaacgattcagtggaaacaactccccgagatgatagtaaagaggctcatgagggaaatgttcaatgtagtagctccaacaagagtagagtccgtgacaaggcgaagaatatcctaagacatgtatctcggaagtcatcacgaaaatctaaaggtgagttagaaccaacagcatcagagagagatctatctgtggaatctgactcctccgacgattttactcccttagttggttcacctctaggccgttcagtgagcggtcgtttcatagccagcactggcactgagaatcccaatggcaacacattgaagagtagtgaattggtaagtgataagggaaacatgaaaactagtgaggaattagttcatgataaagctatgaattcagtaagtccaaaagtttctaatctttgaatatgtttgttgtacattttctttaatgcagagttactgttataccttttacttgtacatgaatatatgtaatgtaatagtttcatattggcttctgtttgtacatgttagtgaaacttctgacatggtgcgacattgtctgctttgagcaaagcccgtatgatttgtataaaagtatgcaatactttttctgtgtatgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="113352" stop="109659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113311" g_stop="113298" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113297" i_stop="113042" i_length="256">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113041" g_stop="112993" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="63" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112992" i_stop="112638" i_length="355">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112637" g_stop="112542" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="159" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112541" i_stop="112471" i_length="71">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112470" g_stop="112281" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="349" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112280" i_stop="111436" i_length="845">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111435" g_stop="111312" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="473" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111311" i_stop="111085" i_length="227">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111084" g_stop="109967" g_length="1118"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="1591" r_length="1118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1600" polyA_stop="1629"/>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U320907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1591</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113311" e_stop="113298"/>
          <exon e_start="113041" e_stop="112993"/>
          <exon e_start="112637" e_stop="112542"/>
          <exon e_start="112470" e_stop="112281"/>
          <exon e_start="111435" e_stop="111312"/>
          <exon e_start="111084" e_stop="109967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACTTGTTGAGGTGCGGTTCCCATTGTCTTTTTTACTACATTCCTCCATCATGCTTGGAGTATTAAGTGTCTTTTGTTTTGACCTTGATCCTTTTATATAGTGATAAATGTTTCACATTAATACACTATCGGGTATCAACTCTCGGCCTTTTCTTTCACTTGCTCAAATGGTGTGCATAGTTCACCAACTGGTATTATGGTTACCAAAAGTCCTAATTAATGATTCGTAAGGAGCTTTTAGACTAAAGTCTGGATAACATTTTGCAGCCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAGGTAACAGTTACTCTAACCTGTCTCTCTCGCTCTCGCTCTCTCGTTGCTCAATATTATGAGGCCCAAATTAATAATGGATTATTGTGAATGATGTCCTAAACCACAACACATGAATGGATTTGAAATAATTTGTTATGTGGAGGTATTTAGTAGTGTAAATTGCAACATCAAATCTTTCGTGCGGAGAATTTTCAAGAATCCTCTTCATTCATTTTGTTTGTACTACGATAATTTATTTAGCGATTTGTTCATAGCTTGTTTGGATGGAAAATAAGGGAATAAGAGCTGGTTGGCTTCAGTTTGGGATGCATATTATTTCTGCTACTTAATTCGATATTGTTTGTTTTCTTTTCAGAGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATGGTTAGCCGGAAATCCTCTTACTGTAATCTATCTAACTAGGACATGCTAAATACCTGAGAGATCATTTTCAGGACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGGGTCTGTTTTTCTCTTTTACTTTTTACTGCAGTAGCATAGAGTCATAGACTAATGATAGGATGTTAGGATATATTATTGGTCCAGACACCATCAAAAAGAAAGAAAGGGCAGCTCGGTGCACTAAACTCCCTCTAAGTGCAAGGTTCAGAGATGGGCTGGACCACTTGGGTCCAATGATCGCAGGCATGCAGCCTTGCCCTGCATTTTTGGAGGTGGTTGTTTCCACAGCTCGGAACCGAACCTCCTGGTCAGATGGCTACAAATTTATTAGTTACACCAAGGATCCCCTCCAATGGCTGAGACATCATTATCATCCAAAAGAAAAGGGGAAAAATAAGGATAGACCAGGAGTGAGTTGTTAACTCCAACCACGTAAGGGTCGGGTTACGCTGGGAAATTTCCATTTTTAGGTGGCTTCTGTTGCTCTTTGCGAGTTATTTCTTGCTTTTAGTTCCTTCTTCCACAACCATTGATTCTCAGCTTGTATTGTGCTCATCTTTATGCTTCATCTATCTCCTGCGTAGCTAATACTCGTAGTAACATCATATTCCTATCTATTGAGATATTATGATGACTTGGACAAGTAGAGATAGATTTTTGCTGTCTTTTGTGTTTCTCGTCCCTGTTCATATCTTGAGTTCCTTTGTATTTGAAGAAAGTAGGATCTTCACTGGCCGCGTGAAGAATAAAACTTACATAATCTATTTGCTATCATATTCTTTTTTTCCCTTTTGAAGAATCCTTTCAGCATCTTCTCTTCTATTGAATGTTATGCAAAATGTGCCTTAATAAATGCAAATGCTTTTGTGTGCACTTTATTTACTCAACATGTTTCTTTTTGGCAGAGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAGGTACATACTTCTTTCCAGCAAGTTACGGTAAACAAGTACTTAGGCTGCCACGAAGCCAACACTTCTCATGAGATCACTGTTAATTGCTTTTGGAAATGATTCAATTTTCAAATTATTCTGTTTTCCAGCTGATGTCATTGAATTAGTTAGGCCTAGTGACAAGTAGGCCATATATTTTTACTAACGAAAGTATAGATGGTTGAAAATTTATGTGTATTAATTTTCAGTTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCATATTGGCTTCTGTTTGTACATGTTAGTGAAACTTCTGACATGGTGCGACATTGTCTGCTTTGAGCAAAGCCCGTATGATTTGTATAAAAGTATGCAATACTTTTTCTGT</genome_strand>
        <mrna_strand>AGACACTTGTTGAG................................................................................................................................................................................................................................................................CCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAG...................................................................................................................................................................................................................................................................................................................................................................AGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATG.......................................................................GACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG...................................................................................................................................................................................................................................TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCATATTGGCTTCTGTTTGTACATGTTAGTGAAACTTCTGACATGGTGCGACATTGTCTGCTTTGAGCAAAGCCCGTATGATTTGTATAAAAGTATGCAATACTTTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330907" ref_strand="+" ref_description="SGN-U330907        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | C2 domain-containing protein | chr1:20000118-20003933 FORWARD | Aliases: F22G10.28(evalue: 2e-51, score=198) genbank/nr: gi|18404532|ref|NP_564637.1| C2 domain-containing protein [Arabidopsis thaliana](evalue: 9e-50, score=198)">
      <seq>ggaatcaaaaaagagttttttggtcaagatttggtgatgggtgtgtttatttttgatgaaagactgtaaatttggaataaagagggagttttttttttctggggtggggagattttaagaaatggcaagtataacagaggttacaattctacatcatgtgtgcattgtgttgatagtaatatggttgcttaattccttcaattatggtcaccctttggtttatttcatctccctaatctatctttatctggttaatgagcagtatgtgactagattaaagaagaaattgcagtttgaggaaaaaagacagtcgaatcaacgacgagtgctttctgattctgaaacagtgaggtggttaaaccatgctcttgaaaagatttggcctgtatgcatggagaatatcgtttcacagaaaattctcctccctatcattccgtggtttatgcagaaatacaaaccctggactgtgaaagacattgcagtgcagtctctctacttaggaagaagcccacctatgttcacggaaatgagggttcttcgtgaatctactggagatgatcaccttgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="116755" stop="114370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116455" g_stop="116206" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116205" i_stop="116110" i_length="96">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116109" g_stop="116035" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="325" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116034" i_stop="115153" i_length="882">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115152" g_stop="115009" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="469" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115008" i_stop="114770" i_length="239">
            <donor d_prob="0.075" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114769" g_stop="114674" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="565" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114673" i_stop="114585" i_length="89">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114584" g_stop="114579" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="571" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U330907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116455" e_stop="116206"/>
          <exon e_start="116109" e_stop="116035"/>
          <exon e_start="115152" e_stop="115009"/>
          <exon e_start="114769" e_stop="114674"/>
          <exon e_start="114584" e_stop="114579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTGGTATGTATTACAAGATTCTGTTTTTTTTTCTTCTGGTTTTTAAGGTTTTGTGGTCTTATGATGTTAATTTAGGCTTTTGTTTGTGTTTCTTTGAAGGTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGAGTGAGTATTTAGCAGCACAGTTTGTAGTATCTTTATGTATTTCTTGTGTTGTTTGATTTAACAGGTCCACAAAGAATATTGATGGACAAAAAGTATAAGAAATTCCAAGATTCAAAAAGTTGCTGAGAGAGATTTTATGGCTTTATTAGTGAAATATGGAGGATTCTGTTTTCTTGTAGTTGTTAAAAGTCCCAAGCTTTACATTTTGTTGAAGGGTCCCAGAATGTTCATTTTCTTTTGCACTATGATTCTTTATGCCAAATTAGGTTGAATAGTTAATTAGGTCTCATGAGTAGCATCTTTACACCAGAATCTGTACTACTTTACAAAAGTCATTAAAATGAACTTGTGGAGAAGTGATCAGATAGGACATGACAAACCTTCTGCTTACCAAGGACATGCTTACCGGAGGGGAGGTGGAGGATTCGGGTAGATGGGTAGTAGTAATAGTTTTGTATCTTGTTTTTCCTACTAGTAGTATTAGTATTATTTCTGGTATTTTTATTATTTTATTATTTCTGCATTTCTCGTTTTTAGTTTTCTAATACTACTTGTTGTCTCTTATGCCTTGGTTTTCGTACTATCCTGCTGTTGTTTCTGCCTTTATTTCCATAAATGTTGTGTTTTTGCCTTATTGAGCCAAGGGTCTATTGGGAACAACCTCTCTACTTGCACAAGGTAGGGATAAGGATTGTACACCCATCCTCCCCATTACACTCGTTATTTTGTTGTTGTTGTTGTTGTTGTTAGATTATGCCAAGCAAATTAGATTTCTTAAGCTTGAATACTGATGATAATGGTAGTCACTTGCTATAGATGTGGTATTTGAGTCAATACATTTTTGTTAATTCTTATATCTTTTTTTTTTTTGGCTTTTCTCAGGTGCTTTCTGATTCTGAAACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTGGTAGGGATACTTATGTACCAATTACCGTTTAAATGTAAAATGGTTTTGGTTTTGATTTTGATTTTCCCCTCTACTATGTGCTTTGAATTATAGTTATTTTAGGTTTAATTGTTGGCTTCTGTATTAAATACATTAGTTGTTAATCATTGTAATATCATCAGCAATTTTCATAACTTCAGTATGAGGATTAATTTGTTCTGCAAGATAAGTTACTAGGATGCTTTTCTGTTAACCTACAGAAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCACCTTGTATGTAATCCTGACTTAAGAAAGTTGTTCTATTCCATCAGTATGGTTCTGCTCGACTTTTGCTTATCTGCTAAGATATGTTGGTGCAGGTATTG</genome_strand>
        <mrna_strand>GGAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTG................................................................................................GTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCTGATTCTGAAACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTG...............................................................................................................................................................................................................................................AAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCACCTT.........................................................................................GTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321371" ref_strand="+" ref_description="SGN-U321371        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative, similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana) | chr1:19994943-19996898 REVERSE | Aliases: T3F20.11, T3F20_11, F22G10.9(evalue: 1e-64, score=242) genbank/nr: gi|1644427|gb|AAB17995.1| glyoxalase II [Arabidopsis thaliana](evalue: 3e-63, score=244)">
      <seq>atcaaatcttgttagggtagattcgcttagaccatcataatcatccctcggttgtacagacgtgggatcactggagtacaagaagaatagctatcgactctcttacttggttcgtgcaactcccggtcatacgttaggctgtattacctatgttactggagatggagtcgatcagcctcagccaaggatggcatttactggtgatgctctattgataaggggatgtggaaggacggactttcagggtggaagttcagacaaattatatgattctgtccattcgcagattttcacattgccgaaagacacattagtatatcctgctcatgactacaagggattcaccgtcagcacagtgggggaggagatgctttacaatccacgactgtcaaaagataaggaaacattcaagaatatcatgcaaaatttgaacttgtcatatccaaaaatgatcgatatcgcggttccatctaacatggtttgtggattgcaagagacgaaatctgatctttgatctctggtttgatcatttcattgtgccagaaattgtaaattgagagcaatctatacacatttagaagtgcaaattgactatgtatgtttggatggaaatgttaaataatggtttattcaattcagttagtaagaactttgttaaattgttgtgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="121023" stop="123175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121323" g_stop="121431" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121432" i_stop="121536" i_length="105">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121537" g_stop="121671" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121672" i_stop="121819" i_length="148">
            <donor d_prob="0.328" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121820" g_stop="121861" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="286" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121862" i_stop="121965" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121966" g_stop="122025" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="346" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122026" i_stop="122108" i_length="83">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122109" g_stop="122162" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="400" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122163" i_stop="122499" i_length="337">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122500" g_stop="122524" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="425" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122525" i_stop="122621" i_length="97">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122622" g_stop="122866" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="670" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="688"/>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U321371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121323" e_stop="121431"/>
          <exon e_start="121537" e_stop="121671"/>
          <exon e_start="121820" e_stop="121861"/>
          <exon e_start="121966" e_stop="122025"/>
          <exon e_start="122109" e_stop="122162"/>
          <exon e_start="122500" e_stop="122524"/>
          <exon e_start="122622" e_stop="122866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATCTTGTTAGGGTAGATTCGCTTAGACCATCATAATCATCCCTCGGTTGTACAGACGTGGGATCACTGGAGTACAAGAAGAATAGCTATCGACTCTCTTACTTGGTCGTTACTCGTTATAATTCTCCATCAGTTATATGAAGACACCTACCAAAGTATTCATGAATATTTGGTTGTAGTGCTGAAATCTACCTTCCTTCTTCATTGCAGGTTCGTGCAACTCCCGGTCATACGTTAGGCTGTATTACCTATGTTACTGGAGATGGAGTCGATCAGCCTCAGCCAAGGATGGCATTTACTGGTGATGCTCTATTGATAAGGGGATGTGGAAGGACGGACTTTCAGGTACATCCTCCTGATGTAGTGCGTGATTTTAGTCGAATGAAATGGAAACCTTTACTCATTAGTAGTTCGAGATGGACTTCAGGAAATGAAATAAAGTTTTGTTTTCTATTAGAATCAAATTTTAATCATTTTTCTTATTTTCCTGCAGGGTGGAAGTTCAGACAAATTATATGATTCTGTCCATTCGCAGGCAAGGATATAGTATCTGTTTCCTTCAAAAAATATAGTAACACGAATGTTCGATTCTTTTCTTATTCTTACTGTTGCTGATTCATTACCATTTTGTCTGAACAGATTTTCACATTGCCGAAAGACACATTAGTATATCCTGCTCATGACTACAAGGGATTCACCGTAAGGATATATGTATTATCTTTTTTCCAGGTTATGAAGTTGCGATTCTCAAATTGTTTACAATAGTGCATTTTATTCTTCAGGTCAGCACAGTGGGGGAGGAGATGCTTTACAATCCACGACTGTCAAAAGATAAGGTACTTCTACACCAGTAGTTCTTATTATCGTTTTAGTTTCACGAGGAACACATCCCTCTGTGGCTAAAGTGTGAGGGAACATGAGCAATCCACTTTCTTCTGTAGTCGAAAAACTTGGACAAGATCTGGCTTTAGCTACCAAAGTGGACGAAGATGGGAGTTTAGATAGTCTTGTTCTGTTTTCACTTGTTGTTCCATTAGTAACATCTCACGTCTTTTCATTTGCATCGTAGAGCTGACTCTACTTACATAAAGTTTTTAACTATACGCGTCTGTTGTTAATTTCTCTTCTTTTTTCTAAGAAAACCTCGTTTCATTCTTGTTATCGATATTGCAGGAAACATTCAAGAATATCATGCAAAGTGAGTTAGCCATTTGATTTTTTTCCTTGTCTCCTCTCAATAGCTTTTTTTTTTTTTCATTATCAGTTGCTTATGAAAATCACTTTCTTCCATACAGATTTGAACTTGTCATATCCAAAAATGATCGATATCGCGGTTCCATCTAACATGGTTTGTGGATTGCAAGAGACGAAATCTGATCTTTGATCTCTGGTTTGATCATTTCATTGTGCCAGAAATTGTAAATTGAGAGCAATCTATACACATTTAGAAGTGCAAATTGACTATGTATGTTTGGATGGAAATGTTAAATAATGGTTTATTCAATTCAGTTAGTAAGAACTTTGTTAAATTGTTGTGATA</genome_strand>
        <mrna_strand>ATCAAATCTTGTTAGGGTAGATTCGCTTAGACCATCATAATCATCCCTCGGTTGTACAGACGTGGGATCACTGGAGTACAAGAAGAATAGCTATCGACTCTCTTACTTG.........................................................................................................GTTCGTGCAACTCCCGGTCATACGTTAGGCTGTATTACCTATGTTACTGGAGATGGAGTCGATCAGCCTCAGCCAAGGATGGCATTTACTGGTGATGCTCTATTGATAAGGGGATGTGGAAGGACGGACTTTCAG....................................................................................................................................................GGTGGAAGTTCAGACAAATTATATGATTCTGTCCATTCGCAG........................................................................................................ATTTTCACATTGCCGAAAGACACATTAGTATATCCTGCTCATGACTACAAGGGATTCACC...................................................................................GTCAGCACAGTGGGGGAGGAGATGCTTTACAATCCACGACTGTCAAAAGATAAG.................................................................................................................................................................................................................................................................................................................................................GAAACATTCAAGAATATCATGCAAA.................................................................................................ATTTGAACTTGTCATATCCAAAAATGATCGATATCGCGGTTCCATCTAACATGGTTTGTGGATTGCAAGAGACGAAATCTGATCTTTGATCTCTGGTTTGATCATTTCATTGTGCCAGAAATTGTAAATTGAGAGCAATCTATACACATTTAGAAGTGCAAATTGACTATGTATGTTTGGATGGAAATGTTAAATAATGGTTTATTCAATTCAGTTAGTAAGAACTTTGTTAAATTGTTGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320492" ref_strand="+" ref_description="SGN-U320492        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:19988423-19989649 REVERSE | Aliases: F22G10.10(evalue: 9e-18, score=87.8) genbank/nr: gi|21554011|gb|AAM63092.1| unknown [Arabidopsis thaliana](evalue: 8e-17, score=90.9)">
      <seq>attcccaactcaaaacttagaaaaattcaacaattaaattttttcaaattcaatgagtgaagaaggtaaagagagtcatcatcaccaccacttcctacaccatcaccaccacggagaacaccatcaccaccacggagaacaccaaccggaggcggtggcggtaccggtgccgccaccggagtatggaacttttcaagcatcttctcaaccggtgatgggatttcctcagccagttccgcctcctggcgctatgggagcacctacgcctgaatactatgctcatggttatcaggctgttccaggttatactgctcctgatcctgaaggaagacccgagagacatcatcgccttccttgctgtggcattggtctcggatggttcttgttcattattggtttccttcttgctggcatcccttggtacctagctgcatttgtccttctttgtgcacaaattgatcctcgagagaaaccaggatacatcgtgtccaccattgctgctgttcttgctacttttgtcctcgtatttggtttgtcgaaggattgactggagagtggtgatcaatctgtgtgtattcatatcggaaccttatctggctttgcttaatttgcattcttttcagtaaaaattccatatctttgattccttcttgtattcttaagatctgcttgtgaatagtaatatgtgcttttaagagtatatgcgtaagtattacattgctgtgttctgtggtgagcggagttatatgctcgtggaagtagcatgtatccgatataatagtcgatgtaactgcaagttgatcactattttgactatataaaatgtgtttgttttgtacaaataatcacttttagggcccttggaatttcaaactcggggggtatattctaaagatttttttgtgggttataaatttaaaaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="123463" stop="127216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123763" g_stop="124064" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124065" i_stop="124946" i_length="882">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124947" g_stop="125028" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="384" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125029" i_stop="126196" i_length="1168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126197" g_stop="126311" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="499" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126312" i_stop="126492" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126493" g_stop="126915" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="922" r_length="423" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="938" polyA_stop="964"/>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U320492" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123763" e_stop="124064"/>
          <exon e_start="124947" e_stop="125028"/>
          <exon e_start="126197" e_stop="126311"/>
          <exon e_start="126493" e_stop="126915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCAACTCAAAACTTAGAAAAATTCAACAATTAAATTTTTTCAAATTCAATGAGTGAAGAAGGTAAAGAGAGTCATCATCACCACCACTTCCTACACCATCACCACCACGGAGAACACCATCACCACCACGGAGAACACCAACCGGAGGCGGTGGCGGTACCGGTGCCGCCACCGGAGTATGGAACTTTTCAAGCATCTTCTCAACCGGTGATGGGATTTCCTCAGCCAGTTCCGCCTCCTGGCGCTATGGGAGCACCTACGCCTGAATACTATGCTCATGGTTATCAGGCTGTTCCAGGTTCTTGCTCCTGTACTTTATCCATTTTGAAGTTTGAAACTTGAAAATTTGAGTTTTTGAAGTTGTGAATGTTGTAATTTGAGTTTGTGTTTTTCGATATGCTTGGAAAAAAATTGAACTTTTTGTAAGTGAAAAATGAAATTTCTCCCTAAAACTAGTCGAGACCGGGTTTTAAAAATTGTTTTTGATTTGGGTGGAGCCACCCTTAGATCGGAGAACTGGCTCAAACTTATGATCTATTTAGAACTAATTAAGCAAAAAGGATTGTGATTCAGAACTCGTAAATTAAAAATCCTGGCTTTGTCTTTGATGTTATTTCCATGGTTTAGGGTGGATTTGACTTTGATATGGAAAATACTGTTGAACTAACTTGAAATGTGAAATGAAGCCATAAGAAACTCGTGGTAGGTTGTACAAGTAGCAAATGATAATTTTTCGTAGAAGCATAATTCATAACTCAGAGGCGGATTCAGGATTTAAATTTCATGGTTTAGTCTTACCCATGAACTCATTACCCTTTTGAAATTATAGGTACATAATTTGATTTTAGTGATTTTTTTAACATATATATTTTATGTTCCATGTCGAAAATGTTGGGTTCAATCGATTTTGTACTGAATATGCCTACGCCTATCCTGACCTCAGATAGTCTGGATTAAAGCTTAGTTGATTTATCGATTAGCTACAGTTCAACCTAGTGTTACAAATGATTAACTTTACATATTCTATGAAGAGAGATTATCTTGTAGGATTATATTTTTAAGGCGGTATGAGGAGACTATCGATGAGTTCTATCATTTGTAACATCAGTATTGTTTATCTATCAGAAGTTCAAAACTAGTGTTATTTACAATTTTCTGCCATCTTTTGCTGATTTTTTAGGTTATACTGCTCCTGATCCTGAAGGAAGACCCGAGAGACATCATCGCCTTCCTTGCTGTGGCATTGGTCTCGGATGGTTCTTGTAAGATCCATTTTTCTTCTCCTTAAATAATCAGAATTCGAGTTGAATTATTGGTGGTTCATGTTGATTTGTGCTTTTAGTAACATATGCTTCTTGCATACTAGTTATCTCCTATACAAGTTTCAATCTGGCTATATCACTAATATTACTTTACAAACTTACTCAAATGGATATCAGAGGCTAAGTGATGGACTGTCTTTTTTATCACTCTACTTTATCTTATATTCTCTGGATTTATGCATCTTTTCTCCACAAGGAAGACACAACATTTGTTGTTTCTTGTCTTGATTAGTATAGGGTAATGTGCCTGGCGATTCTAGAGCTAATGATTGTATCTCCAAGTGCATACCATCAAAGTACAAGAAAATCGATGAGAAGTAAACAAACTAACAATCTTGAATGTTCCTTGAAAGGGTGCTGGAAATCGTGCCCTTGATCATTCATGTTCTCCTCCAAGAGAGCATATTTTGGGAGAGTTAGTAGCTTTAAAAGAATCATTGAAAGAAAAAGTGGATTATTCGAACATAGTATTTAGTGGCTTGAAGCTTCAAATATACTGGAGATATTCTTTTCCCTACAGGGTTTCTCATTTTTAGTTGGAATTGTGCTGACCCTGACTTGTTCAGTTGTTTCGCTCTTGTCACCTCCCACCAAACAGCAGGTACTAGGTAATTCTATCACCAAATTTAGGACATATGGGAAGAAATCACCTAGTATTTTTATCTATACCGGGATTTGAACCTGAGACTCATGGTATTCAGCCCATTTCATGGACCACTAGGCCACAACCTTGGGTGCTCTGAGGCGTAGTTGTTGTCGAGAAGGCCCAAAACCAAATGATGCAGCATTCTTGTGCTTCATCGTCTAAGAAAGTGCTTTGGCAGTAGAGATAAATAACAGGCCAAGGGACCTGTGATAGAATAATGGACGACACAAGAACTTTCTGTTGAACATGTTAGTTGAATTTGAATGTATCGATAGTTACTATATAGATTTGTTGATGTTTAGCGAACATTGGTAAGATTGACATTAGAAAGTTTGTCTTGCCTTGCCTGGTATCAGTTGATTTAGATACTAGAATCCTGCAATTTGACCTTATGTATTTCAAGGTATCTCACTTTCGATGATTCTTAGCTGTCTGTTTCAATTTGATTTCATCTTTTTGAAGGTTCATTATTGGTTTCCTTCTTGCTGGCATCCCTTGGTACCTAGCTGCATTTGTCCTTCTTTGTGCACAAATTGATCCTCGAGAGAAACCAGGATACATCGTGTCCACCATTGCTGTAAGTAATCTTTTTTCTTGGGCAACAAATGTATTAATTGATGATGTGTTTTTGCCTACAAAGTCTAGGTTTTTCGACTTAATCAGAATTTGAAAAACAAAACCATAGAATTCTGCCAATTTGCATATAGCAACTTAATGTCTCATGTAATGTAATAATACCATTCTGTGTTGCATTGCAGGCTGTTCTTGCTACTTTTGTCCTCGTATTTGGTTTGTCGAAGGATTGACTGGAGAGTGGTGATCAATCTGTGTGTATTCATATCGGAACCTTATCTGGCTTTGCTTAATTTGCATTCTTTTCAGTAAAAATTCCATATCTTTGATTCCTTCTTGTATTCTTAAGATCTGCTTGTGAATAGTAATATGTGCTTTTAAGAGTATATGCGTAAGTATTACATTGCTGTGTTCTGTGGTGAGCGGAGTTATATGCTCGTGGAAGTAGCATGTATCCGATATAATAGTCGATGTAACTGCAAGTTGATCACTATTTTGACTATATAAAATGTGTTTGTTTTGTACAAATAATCACTTTTATGGCCCTTCGAATTTCAAACTCGAGGGGTATATTCTAAAGATTTTCTTGTGAGTTATAAATTTAAAAC</genome_strand>
        <mrna_strand>ATTCCCAACTCAAAACTTAGAAAAATTCAACAATTAAATTTTTTCAAATTCAATGAGTGAAGAAGGTAAAGAGAGTCATCATCACCACCACTTCCTACACCATCACCACCACGGAGAACACCATCACCACCACGGAGAACACCAACCGGAGGCGGTGGCGGTACCGGTGCCGCCACCGGAGTATGGAACTTTTCAAGCATCTTCTCAACCGGTGATGGGATTTCCTCAGCCAGTTCCGCCTCCTGGCGCTATGGGAGCACCTACGCCTGAATACTATGCTCATGGTTATCAGGCTGTTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGCTCCTGATCCTGAAGGAAGACCCGAGAGACATCATCGCCTTCCTTGCTGTGGCATTGGTCTCGGATGGTTCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCCTTCTTGCTGGCATCCCTTGGTACCTAGCTGCATTTGTCCTTCTTTGTGCACAAATTGATCCTCGAGAGAAACCAGGATACATCGTGTCCACCATTGCT.....................................................................................................................................................................................GCTGTTCTTGCTACTTTTGTCCTCGTATTTGGTTTGTCGAAGGATTGACTGGAGAGTGGTGATCAATCTGTGTGTATTCATATCGGAACCTTATCTGGCTTTGCTTAATTTGCATTCTTTTCAGTAAAAATTCCATATCTTTGATTCCTTCTTGTATTCTTAAGATCTGCTTGTGAATAGTAATATGTGCTTTTAAGAGTATATGCGTAAGTATTACATTGCTGTGTTCTGTGGTGAGCGGAGTTATATGCTCGTGGAAGTAGCATGTATCCGATATAATAGTCGATGTAACTGCAAGTTGATCACTATTTTGACTATATAAAATGTGTTTGTTTTGTACAAATAATCACTTTTAGGGCCCTTGGAATTTCAAACTCGGGGGGTATATTCTAAAGATTTTTTTGTGGGTTATAAATTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339011" ref_strand="+" ref_description="SGN-U339011        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 2e-116, score=402) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 1e-126, score=440)">
      <seq>cgctcaaaatatattttgagaagttgaagaaaatggcatcaatggcagcaacagctagctccaccacagttgttaaagcaacaccatttttgggccaaaccaaaaatgctaaccctcttagagatgttgttgccatgggctctgccagattcaccatgagtaatgatttgtggtacggacctgaccgtgttaagtacttgggacccttttctgctcaaactccttcttacttgaacggagagttccctggtgactacggatgggacactgctggtttatccgctgatcccgaggcctttgccaagaacagagctcttgaggtacagttatttgttcactcacacttaccaaaaagagaactaagatttgcatacgtcctaccttcctcagacgccactcattttgcttagtgacattgaactatataggttatccatggaagatgggcaatgcttggtgcactaggttgcattttccccgaagttcttgaaaaatgggtgaaggtagacttcaaagaaccagtatggttcaaagcaggatcacaaatcttcagtgacggtggacttgactacttgggaaaccctaaccttgtccatgctcagagtattctagctgtgctaggtttccaagtggtgcttatgggacttgttgaaggtttcagaatcaacggacttccaggcgttggagaaggcaacgacttataccccggtggccaatattttgacccactcggccttgcggatgaccctaccacatttgctgaactcaaggtaaaggaaatcaaaaacggaagactagctatgttctccatgtttggaatcttcgttcaagctattgttaccggtaaaggcccctcttgaaaacctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="127295" stop="128962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127594" g_stop="127751" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127953" g_stop="128662" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="869" r_length="711" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U339011" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127594" e_stop="127751"/>
          <exon e_start="127953" e_stop="128662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAGAGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGACTACTTGGGAAACCCTAACCTTGTCCATGCTCAGAGTATTCTAGCTGTGCTAGGTTTCCAAGTGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCAACGGACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTTACCGGTAAAGG-CCCTCTTGAAAACCTATT</genome_strand>
        <mrna_strand>CGCTCAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG.........................................................................................................................................................................................................AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGACTACTTGGGAAACCCTAACCTTGTCCATGCTCAGAGTATTCTAGCTGTGCTAGGTTTCCAAGTGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCAACGGACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGAATCTTCGTTCAAGCTATTGTTACCGGTAAAGGCCCCTCTTGAAAACCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339005" ref_strand="+" ref_description="SGN-U339005        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 4e-60, score=229) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 3e-67, score=258)">
      <seq>cactaaaatatattttgagaagttgaagaaaatggcatcaatggcagcaacagctagctccaccacagttgttaaagcaacaccatttttgggccaaaccaaaaatgctaaccctcttagagatgttgttgccatgggctctgccagattcaccatgagtaatgatttgtggtacggacctgaccgtgttaagtacttgggacccttttctgctcaaactccttcttacttgaacggagagttccctggtgactacggatgggacactgctggtttatccgctgatcccgaggcctttgccaagaacagagctcttgaggttatccatggaagatgggcaatgcttggtgcactaggttgcattttccccgaagttcttgaaaaatgggtgaaggtagacttcaaagaaccagtatggttcaaagcaggatcacaaatcttcgttcaagctattgttaccggtaaaggccctcttgaaaacctattagatcaccttgacaaccctgtggctaacaatgcttgggtttacgccactaagtttgttcctggagcttagatttatgtttcaattcattggaagtactaccatttgtgtaactgaaatcttcagaaatgcaaatatattgtagatgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="127296" stop="129112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127596" g_stop="127751" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127953" g_stop="128114" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="319" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128115" i_stop="128222" i_length="108">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128223" g_stop="128345" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="442" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128346" i_stop="128618" i_length="273">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128619" g_stop="128820" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="644" r_length="202" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U339005" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127596" e_stop="127751"/>
          <exon e_start="127953" e_stop="128114"/>
          <exon e_start="128223" e_stop="128345"/>
          <exon e_start="128619" e_stop="128820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAC-AAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAGAGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGACTACTTGGGAAACCCTAACCTTGTCCATGCTCAGAGTATTCTAGCTGTGCTAGGTTTCCAAGTGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCAACGGACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATTAGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTTTACGCCACTAAGTTTGTTCCTGGAGCTTAGATTTATGTTTCAATTCATTGGAAGTACTACCATTTGTGTAACTGAAATCTTCAGAAATGCAAATATATTGTAGATGCAAATCGTTTCA</genome_strand>
        <mrna_strand>CACTAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG.........................................................................................................................................................................................................AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAG............................................................................................................GTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTC.................................................................................................................................................................................................................................................................................GTTCAAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATTAGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTTTACGCCACTAAGTTTGTTCCTGGAGCTTAGATTTATGTTTCAATTCATTGGAAGTACTACCATTTGTGTAACTGAAATCTTCAGAAATGCAAATATATTGTAGATGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314749" ref_strand="+" ref_description="SGN-U314749        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 3e-48, score=188) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 1e-50, score=202)">
      <seq>cacaaaatatattttgagaagttgaagaaaatggcatcaatggcagcaacagctagctccaccacagttgttaaagcaacaccatttttgggccaaaccaaaaatgctaaccctcttagagatgttgttgccatgggctctgccagattcaccatggtatatatacattatattctcttttcttttctccatgttttagtttttatgctagtttatcttggtattcgcaagctatggaaacagtttcttgcagtatccttctcggacctcagacgcgagagcttgtgcatacctttttttttccttttcctactggatttgatgtgacttgtattttttttcctctcatcttattaaagtaatgatttgtggtacggacctgaccgtgttaagtacttgggacccttttctgctcaaactccttcttacttgaacggagagttccctggtgactacggatgggacactgctggtttatccgctgatcccgaggcctttgccaagaacagagctcttgaggtacagttatttgttcactcacacttaccaaaaagagaactaagatttgcatacgtcctaccttcctcaaacgccactcattttgcttagtgacattgaactatataggttatccatggaagatgggcaatgcttggtgcactaggttgcattttccccgaagttcttgaaaaatgggtgaaggtagacttcaaagaaccagtatggttcaaagcaggatcacaaatcttcagtgacggtggacttgacaagcgatactgtgttctcagttcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="127296" stop="128665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127596" g_stop="128363" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U314749" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127596" e_stop="128363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAGAGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGAC</genome_strand>
        <mrna_strand>CACAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAAAGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAAACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339009" ref_strand="+" ref_description="SGN-U339009        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 3e-60, score=229) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 1e-65, score=253)">
      <seq>aaaatatattttgagaagttgaagaaaatggcatcaatggcagcaaccagctagctccaccaccagttgttaaagcaaccaccgtttttgggccaaaccaaaaatgctaacccctcttagagatgttgttgccatgggctctgccagattcaccatgagtaatgatttgtggtaccggacctgaccgtgttaagtacttgggacccttttctgctcaaacctccttcttaccttgaacggagaattccctggtgacctaccggatgggacactgctggtttatctgctgatcccgaggcctttgccaagaacagagctcttgaggtacactctaccttcttcaaacctcactcattttgcttattgacactgaactatataggttatccatggaagatgggcaatgcttggtgcactaggttgcattttccccgaagttcttgaaaaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="127299" stop="128593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127599" g_stop="127751" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127953" g_stop="128114" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="324" r_length="167" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128115" i_stop="128164" i_length="50">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128165" g_stop="128293" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="453" r_length="129" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U339009" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127599" e_stop="127751"/>
          <exon e_start="127953" e_stop="128114"/>
          <exon e_start="128165" e_stop="128293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAA-CAGCTAGCTCCACCA-CAGTTGTTAAAGCAA-CACCATTTTTGGGCCAAACCAAAAATGCTAA-CCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAGAGTAATGATTTGTGGTA-CGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAA-CTCCTTCTTA-CTTGAACGGAGAGTTCCCTGGTGA-CTA-CGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGT</genome_strand>
        <mrna_strand>AAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACCAGCTAGCTCCACCACCAGTTGTTAAAGCAACCACCGTTTTTGGGCCAAACCAAAAATGCTAACCCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG.........................................................................................................................................................................................................AGTAATGATTTGTGGTACCGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACCTCCTTCTTACCTTGAACGGAGAATTCCCTGGTGACCTACCGGATGGGACACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAG..................................................GTACACTCTACCTTCTTCAAACCTCACTCATTTTGCTTATTGACACTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339008" ref_strand="-" ref_description="SGN-U339008        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyll A-B binding protein / LHCII type III (LHCB3), identical to Lhcb3 protein (Arabidopsis thaliana) GI:4741952; contains Pfam profile PF00504: Chlorophyll A-B binding protein | chr5:22055555-22056794 FORWARD | Aliases: MDK4.9, MDK4_9(evalue: 2e-47, score=186) genbank/nr: gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon esculentum] >gi|115794|sp|P27489|CB23_LYCES Chlorophyll a-b binding protein 13, chloroplast precursor (LHCII type III CAB-13) (evalue: 1e-48, score=196)">
      <seq>agctagctcctcctcagttgttaagacaactccatatctggccaaaccaaaaatgctaaccctcttagagatgttgttgccatgggctctgccagattcaccatgagtaatgatttgtggtacggacctgaccgtgttaagtacttgggacccttttctgctcaaactccttcttacttgaacggagagttccctggtgactacgtatgggacactgctggtttatccgctgatcccgaggcctttgccaagaacagagctcttcaggttatccatggaagatggacaatgcttggtgcttatgggacttgttgaaggtttcagaatcatcgtacttccaggcgttggagaaggcaacgacttataccccggtggccaatattttgacccactcggccttgcggatgaccctaccacatttgctgaactcaaggtaaaggaaatcaaaaacggaagactagctatgttctccatgtttggattcttcgttcgagctattgttaccggtaaaggccctcttgaaaacctattagatccccttggcaaccctgtggctaacaatgcttgggtttacgccactaagtttgttcctggagcttagatttatgtttcaattcattggaagtactaccatttgtgtaactgaaatcttcagaaatgcaaatatattgtgatgcaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="+" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="127346" stop="129112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127646" g_stop="127751" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127953" g_stop="128114" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="267" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128115" i_stop="128222" i_length="108">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128223" g_stop="128248" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="293" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128249" i_stop="128424" i_length="176">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128425" g_stop="128811" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="679" r_length="386" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="700"/>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="+" ref_id="SGN-U339008" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339008" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127646" e_stop="127751"/>
          <exon e_start="127953" e_stop="128114"/>
          <exon e_start="128223" e_stop="128248"/>
          <exon e_start="128425" e_stop="128811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAGAGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGACTACTTGGGAAACCCTAACCTTGTCCATGCTCAGAGTATTCTAGCTGTGCTAGGTTTCCAAGTGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCAACGGACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATTAGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTTTACGCCACTAAGTTTGTTCCTGGAGCTTAGATTTATGTTTCAATTCATTGGAAGTACTACCATTTGTGTAACTGAAATCTTCAGAAATGCAAATATATTGTAGATGCAA</genome_strand>
        <mrna_strand>AGCTAGCTCCTCCTCAGTTGTTAAGACAACTCCATATCT-GGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG.........................................................................................................................................................................................................AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGTATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTCAG............................................................................................................GTTATCCATGGAAGATGGACAATGCT................................................................................................................................................................................TGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCATCGTACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCGAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATTAGATCCCCTTGGCAACCCTGTGGCTAACAATGCTTGGGTTTACGCCACTAAGTTTGTTCCTGGAGCTTAGATTTATGTTTCAATTCATTGGAAGTACTACCATTTGTGTAACTGAAATCTTCAGAAATGCAAATATATTGT-GATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314746" ref_strand="+" ref_description="SGN-U314746        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2B, putative, strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP:O22582, Lycopersicon esculentum GI:3021489, Capsicum annuum SP:O49118; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr1:2412977-2413705 FORWARD | Aliases: F24B9.10, F24B9_10(evalue: 2e-44, score=175) genbank/nr: Histone(evalue: 9e-43, score=176)">
      <seq>ggcgattggcggccaatcggccgaattgacactattcaaaccccaaaatcccccaaattttcccttcaatggctccaaaggcagagaagaagccatcagctgagaaagctcctaaggccggcaagaagctgccgaaggacggcggagctgctgctgctggagacaagaagaagaagaaatcgaagaagtcgattgagacatacaagatctacatcttcaaggtgttgaagcaggttcatccagatataggtatttcaagtaaggctatgggaatcatgaacagcttcatcaatgatatcttcgagaagcttgctcaggaatcatccaggcttgctaggtacaacaaaaagcctaccatcacttctcgggagattcaaactgctgttcgattggtccttcccggtgaattggctaagcacgccgtctctgagggtactaaagctgttaccaaattcactagctcttagatttagatttgtttgttttctgtcgatttttctgttggatttatgattttcgattagatttggtgtgaagaacagaagaattgaatatagaatagatttgattgagttcagtaaatgaaattgttatatccaaattttctattctaatagttcatttttgtgctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttgaaacgatttgcatctacaatatatttgcatttctgaagatttcagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020N16-ARFKF/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0020N16.1" temp_strand="-" temp_description="C12HBa0020N16.1  AC235700.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0020N16*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="129769" stop="128465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129467" g_stop="128763" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="731" r_length="706" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020N16.1" gen_strand="-" ref_id="SGN-U314746" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020N16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129467" e_stop="128763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACACTATTCAAACCCCAAAATCCCCCAAATTTTCCCTTCAATGGCTCCAAAGGCAGAGAAGAAGCCATCAGCTGAGAAAGCTCCTAAGGCCGGCAAGAAGCTGCCGAAGGACGGCGGAGCTGCTGCTGCTGGAGACAAGAAGAAGAAGAAATCGAAGAAGTCGATTGAGACATACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATAGGTATTTCAAGTAAGGCTATGGGAATCATGAACAGCTTCATCAATGATATCTTCGAGAAGCTTGCTCAGGAATCATCCAGGCTTGCTAGGTACAACAAAAAGCCTACCATCACTTCTCGGGAGATTCAAACTGCTGTTCGATTGGTCCTTCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACTAAAGCTGTTACCAAATTCACTAGCTCTTAGATTTAGATTTGTTTGTTTTCTGTCGATTTTTCTGTTGGATTTATGATTTTCGATTAGATTTGGTGTGAAGAACAGAAGAATTGAATATAGAATAGATTTGATTGAGTTCAGTAAATGAAATTGTTATATCCAAATTTTCTATTCTAATAGTTCATTTTTGTGCTCATGACCTCTTTTATCTCTA-CAAATGTTAGTAAACAAAGGTTGAAACGATTTGCATCTACAATATATTTGCATTTCTGAAGATTTCAGTTACACAAATG</genome_strand>
        <mrna_strand>TTGACACTATTCAAACCCCAAAATCCCCCAAATTTTCCCTTCAATGGCTCCAAAGGCAGAGAAGAAGCCATCAGCTGAGAAAGCTCCTAAGGCCGGCAAGAAGCTGCCGAAGGACGGCGGAGCTGCTGCTGCTGGAGACAAGAAGAAGAAGAAATCGAAGAAGTCGATTGAGACATACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATAGGTATTTCAAGTAAGGCTATGGGAATCATGAACAGCTTCATCAATGATATCTTCGAGAAGCTTGCTCAGGAATCATCCAGGCTTGCTAGGTACAACAAAAAGCCTACCATCACTTCTCGGGAGATTCAAACTGCTGTTCGATTGGTCCTTCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACTAAAGCTGTTACCAAATTCACTAGCTCTTAGATTTAGATTTGTTTGTTTTCTGTCGATTTTTCTGTTGGATTTATGATTTTCGATTAGATTTGGTGTGAAGAACAGAAGAATTGAATATAGAATAGATTTGATTGAGTTCAGTAAATGAAATTGTTATATCCAAATTTTCTATTCTAATAGTTCATTTTTGTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTTGAAACGATTTGCATCTACAATATATTTGCATTTCTGAAGATTTCAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7567" PGL_stop="5867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7567" e_stop="7305"/>
            <exon e_start="6901" e_stop="6840"/>
            <exon e_start="6724" e_stop="5867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7567" e_stop="7305" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7304" i_stop="6902" i_length="403"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6901" e_stop="6840" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6839" i_stop="6725" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="6724" e_stop="5867" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7567" stop="7305"/>
              <exon start="6901" stop="6840"/>
              <exon start="6724" stop="5867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTGCTGGCCTATACCTTTGTCCCTTATTTTGCTTGCCACCTTGTGTCTACTACTCTTGGAAGCTGAGTGTGTGTTCATCTTCAACACAAGTCAATTGCTCTAATCAGAAAACAAAAGATGGCAACACAGGCATTGATCTCTTCATCATCTATTGCATCCTCAACAGAGGCTGCCAGACAAATTCTAGGAGGAAGACCTTTCCAATCTCAAATCAAGAAGGCTTCCTTTGTTGTAAGGGCTACTGCCACTCCACCTGTTAAG : CAAGGAGCAAATAGGCCTCTCTGGTTTGCCTCCAAGCAGAGCCTTTCATACTTAGATGGCAG : CCTTCCTGGTGATTATGGATTTGATCCCCTGGGACTGTCAGACCCTGAAGGTACTGGAGGTTTCATTGAACCAAAATGGCTAGCATATGGAGAGGTCATCAATGGAAGATTTGCTATGTTGGGAGTAGTAGGAGCCATTGCGCCCGAGATTCTTGGAAAGGCTGGTCTCATCCCACCAGAGACGGCCCTTCCATGGTTCCAAACAGGAGTGATTCCTCCAGCTGGAACATACAACTATTGGGCAGACGGCTACACACTATTTGTACTGGAGATGGCACTCATGGGATTTGCTGAACACAGAAGATTCCAGGACTGGGCCAAGCCAGGTTCTATGGGTAAACAATACTTTTTGGGACTAGAGAAAGGCTTGGGAGGTTCTGGAGACCCAGCATACCCAGGTGGACCTTTCTTTAACCCTCTCGGGTTCGGAAAAGATGAGAAGTCTATGAAGGACTTAAAGCTAAAGGAGATTAAGAATGGAAGACTAGCTATGTTGGGTATCTTAGGTTACTTCATTCAAGGTTTGGTAACTGGAGTTGGACCTTACCAAAACCTCCTTGACCATTTGGCTGACCCTGCAAACAACAATGTCTTGACCAGCCTCAAGTTCCACTAAACAAGGAGCAAATCACCCTGTTTTAGCTACCCTGATCTGATATGTAAACATTATGTGCAGATATTATTTTGCATATCATTGTAATCAGCTAAAAAGGACATGTCAACAAAAACCTGTTTTTCCTGAGTTTTAGCTGTTAGCTTCCTGCTGCAGTTTCTGCAGCATTCTTTAGGATCATGTGTAAACTCAATTCTCTAAGACAAAAAAAAGAGCAAATACTGGATTAAACATAGCATTAAAAG</gDNA_template>
            <first_frame> T  C  W  P  I  P  L  S  L  I  L  L  A  T  L  C  L  L  L  L  E  A  E  C  V  F  I  F  N  T  S  Q  L  L  *  S  E  N  K  R  W  Q  H  R  H  *  S  L  H  H  L  L  H  P  Q  Q  R  L  P  D  K  F  *  E  E  D  L  S  N  L  K  S  R  R  L  P  L  L  *  G  L  L  P  L  H  L  L  S :   K  E  Q  I  G  L  S  G  L  P  P  S  R  A  F  H  T  *  M  A   : A  F  L  V  I  M  D  L  I  P  W  D  C  Q  T  L  K  V  L  E  V  S  L  N  Q  N  G  *  H  M  E  R  S  S  M  E  D  L  L  C  W  E  *  *  E  P  L  R  P  R  F  L  E  R  L  V  S  S  H  Q  R  R  P  F  H  G  S  K  Q  E  *  F  L  Q  L  E  H  T  T  I  G  Q  T  A  T  H  Y  L  Y  W  R  W  H  S  W  D  L  L  N  T  E  D  S  R  T  G  P  S  Q  V  L  W  V  N  N  T  F  W  D  *  R  K  A  W  E  V  L  E  T  Q  H  T  Q  V  D  L  S  L  T  L  S  G  S  E  K  M  R  S  L  *  R  T  *  S  *  R  R  L  R  M  E  D  *  L  C  W  V  S  *  V  T  S  F  K  V  W  *  L  E  L  D  L  T  K  T  S  L  T  I  W  L  T  L  Q  T  T  M  S  *  P  A  S  S  S  T  K  Q  G  A  N  H  P  V  L  A  T  L  I  *  Y  V  N  I  M  C  R  Y  Y  F  A  Y  H  C  N  Q  L  K  R  T  C  Q  Q  K  P  V  F  P  E  F  *  L  L  A  S  C  C  S  F  C  S  I  L  *  D  H  V  *  T  Q  F  S  K  T  K  K  R  A  N  T  G  L  N  I  A  L  K  </first_frame>
            <second_frame>  L  A  G  L  Y  L  C  P  L  F  C  L  P  P  C  V  Y  Y  S  W  K  L  S  V  C  S  S  S  T  Q  V  N  C  S  N  Q  K  T  K  D  G  N  T  G  I  D  L  F  I  I  Y  C  I  L  N  R  G  C  Q  T  N  S  R  R  K  T  F  P  I  S  N  Q  E  G  F  L  C  C  K  G  Y  C  H  S  T  C  *   : A  R  S  K  *  A  S  L  V  C  L  Q  A  E  P  F  I  L  R  W  Q  :  P  S  W  *  L  W  I  *  S  P  G  T  V  R  P  *  R  Y  W  R  F  H  *  T  K  M  A  S  I  W  R  G  H  Q  W  K  I  C  Y  V  G  S  S  R  S  H  C  A  R  D  S  W  K  G  W  S  H  P  T  R  D  G  P  S  M  V  P  N  R  S  D  S  S  S  W  N  I  Q  L  L  G  R  R  L  H  T  I  C  T  G  D  G  T  H  G  I  C  *  T  Q  K  I  P  G  L  G  Q  A  R  F  Y  G  *  T  I  L  F  G  T  R  E  R  L  G  R  F  W  R  P  S  I  P  R  W  T  F  L  *  P  S  R  V  R  K  R  *  E  V  Y  E  G  L  K  A  K  G  D  *  E  W  K  T  S  Y  V  G  Y  L  R  L  L  H  S  R  F  G  N  W  S  W  T  L  P  K  P  P  *  P  F  G  *  P  C  K  Q  Q  C  L  D  Q  P  Q  V  P  L  N  K  E  Q  I  T  L  F  *  L  P  *  S  D  M  *  T  L  C  A  D  I  I  L  H  I  I  V  I  S  *  K  G  H  V  N  K  N  L  F  F  L  S  F  S  C  *  L  P  A  A  V  S  A  A  F  F  R  I  M  C  K  L  N  S  L  R  Q  K  K  E  Q  I  L  D  *  T  *  H  *  K </second_frame>
            <third_frame>   L  L  A  Y  T  F  V  P  Y  F  A  C  H  L  V  S  T  T  L  G  S  *  V  C  V  H  L  Q  H  K  S  I  A  L  I  R  K  Q  K  M  A  T  Q  A  L  I  S  S  S  S  I  A  S  S  T  E  A  A  R  Q  I  L  G  G  R  P  F  Q  S  Q  I  K  K  A  S  F  V  V  R  A  T  A  T  P  P  V  K  :  Q  G  A  N  R  P  L  W  F  A  S  K  Q  S  L  S  Y  L  D  G  S :   L  P  G  D  Y  G  F  D  P  L  G  L  S  D  P  E  G  T  G  G  F  I  E  P  K  W  L  A  Y  G  E  V  I  N  G  R  F  A  M  L  G  V  V  G  A  I  A  P  E  I  L  G  K  A  G  L  I  P  P  E  T  A  L  P  W  F  Q  T  G  V  I  P  P  A  G  T  Y  N  Y  W  A  D  G  Y  T  L  F  V  L  E  M  A  L  M  G  F  A  E  H  R  R  F  Q  D  W  A  K  P  G  S  M  G  K  Q  Y  F  L  G  L  E  K  G  L  G  G  S  G  D  P  A  Y  P  G  G  P  F  F  N  P  L  G  F  G  K  D  E  K  S  M  K  D  L  K  L  K  E  I  K  N  G  R  L  A  M  L  G  I  L  G  Y  F  I  Q  G  L  V  T  G  V  G  P  Y  Q  N  L  L  D  H  L  A  D  P  A  N  N  N  V  L  T  S  L  K  F  H  *  T  R  S  K  S  P  C  F  S  Y  P  D  L  I  C  K  H  Y  V  Q  I  L  F  C  I  S  L  *  S  A  K  K  D  M  S  T  K  T  C  F  S  *  V  L  A  V  S  F  L  L  Q  F  L  Q  H  S  L  G  S  C  V  N  S  I  L  *  D  K  K  K  S  K  Y  W  I  K  H  S  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7499" stop="7305"/>
                    <exon start="6901" stop="6840"/>
                    <exon start="6724" stop="6109"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCVHLQHKSIALIRKQKMATQALISSSSIASSTEAARQILGGRPFQSQIKKASFVVRATATPPVKQGANRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGVVGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKDLKLKEIKNGRLAMLGILGYFIQGLVTGVGPYQNLLDHLADPANNNVLTSLKFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15350" PGL_stop="16086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15350" e_stop="15602"/>
            <exon e_start="15835" e_stop="15996"/>
            <exon e_start="16079" e_stop="16086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="15350" e_stop="15602" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15603" i_stop="15834" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15835" e_stop="15996" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="15997" i_stop="16078" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16079" e_stop="16086" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15350" stop="15602"/>
              <exon start="15835" stop="15996"/>
              <exon start="16079" stop="16086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCAACCTCGGTTCTAGATGGGTACAATGCTTGCATATTTGCCTACGGTCAGACAGGTACTGGCAAGACATTTACAATGGAAGGCACAGAAGAATCTCGTGGGGTCAATTACCGAACTCTTGAGGAGCTATTCCGCATTATTGAGGAGAGAAAGAACGCAGTTCGGTATGAAATATCAGTGAGCGTCTTGGAAGTATACAATGAGCAGATTCGGGATTTGCTTGTTTCAGGATCTCAACAAGGCGTGAAAAG : GCTTGAAATCAAGCAAGATGGAGAAGGAATGCATCATGTTCCTGGACTAGTTGAGGCCCACGTGAATAATATGAATGAAGTTTGGGAAGCTTTACGAACTGGTAGCAATGCGAGGGCAGTTGGATCAACCAATGCAAATGAGCACAGCAGCCGATCACATTG : CATACATT</gDNA_template>
            <first_frame> W  Q  P  R  F  *  M  G  T  M  L  A  Y  L  P  T  V  R  Q  V  L  A  R  H  L  Q  W  K  A  Q  K  N  L  V  G  S  I  T  E  L  L  R  S  Y  S  A  L  L  R  R  E  R  T  Q  F  G  M  K  Y  Q  *  A  S  W  K  Y  T  M  S  R  F  G  I  C  L  F  Q  D  L  N  K  A  *  K   : G  L  K  S  S  K  M  E  K  E  C  I  M  F  L  D  *  L  R  P  T  *  I  I  *  M  K  F  G  K  L  Y  E  L  V  A  M  R  G  Q  L  D  Q  P  M  Q  M  S  T  A  A  D  H  I   : A  Y  I </first_frame>
            <second_frame>  G  N  L  G  S  R  W  V  Q  C  L  H  I  C  L  R  S  D  R  Y  W  Q  D  I  Y  N  G  R  H  R  R  I  S  W  G  Q  L  P  N  S  *  G  A  I  P  H  Y  *  G  E  K  E  R  S  S  V  *  N  I  S  E  R  L  G  S  I  Q  *  A  D  S  G  F  A  C  F  R  I  S  T  R  R  E  K  :  A  *  N  Q  A  R  W  R  R  N  A  S  C  S  W  T  S  *  G  P  R  E  *  Y  E  *  S  L  G  S  F  T  N  W  *  Q  C  E  G  S  W  I  N  Q  C  K  *  A  Q  Q  P  I  T  L  :  H  T   </second_frame>
            <third_frame>   A  T  S  V  L  D  G  Y  N  A  C  I  F  A  Y  G  Q  T  G  T  G  K  T  F  T  M  E  G  T  E  E  S  R  G  V  N  Y  R  T  L  E  E  L  F  R  I  I  E  E  R  K  N  A  V  R  Y  E  I  S  V  S  V  L  E  V  Y  N  E  Q  I  R  D  L  L  V  S  G  S  Q  Q  G  V  K  R :   L  E  I  K  Q  D  G  E  G  M  H  H  V  P  G  L  V  E  A  H  V  N  N  M  N  E  V  W  E  A  L  R  T  G  S  N  A  R  A  V  G  S  T  N  A  N  E  H  S  S  R  S  H  C :   I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15352" stop="15602"/>
                    <exon start="15835" stop="15996"/>
                    <exon start="16079" stop="16085"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQQGVKRLEIKQDGEGMHHVPGLVEAHVNNMNEVWEALRTGSNARAVGSTNANEHSSRSHCIH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27610" PGL_stop="26093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27610" e_stop="27257"/>
            <exon e_start="26703" e_stop="26093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27610" e_stop="27257" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27256" i_stop="26704" i_length="553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26703" e_stop="26093" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27610" stop="27257"/>
              <exon start="26703" stop="26093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTTCATCTAGTATATATCTTTTAATTATATCAAAAAATGAGTAATGAAGTTGTTCTTTTGAGTGCTTATGTGAGTATGTTTGGTATGAGGGTAAGAATTGCATTACATGAAAAAGGGATTCAATATGAATATAAAGAGGAAGATTTGAGTAATAAAAGTGAACTTTTATTACAAATGAATCCAATTCATAAGAAAATTCCAGTGTTAATTCATAATGGAAAACCAATTTGTGAGTCACTTATAATTGTTGAGTACATAGATGAAGTTTGGAAGGACAAATCTCCTTTGATGCCTTTTAATCCTTATAAGAGGGCTCAAGCTAGGTTTTGGGCTGATTTTATTGACAAAAAG : GTCTATGATAGCGGAAAGAGAATATGGGCTACAAAAGGAGAAGATCAAGAGGCAGCCAAGAAAGAATTCATAGAATACCTAAAACTATTGGAAGGAGAATTAGGAGATAAGACATATTTCAATGGAGAAAATTTTGGATTTGTGGATTTGGCTTTAATTCCTTTCTATAGTTGGTTCCCAACTTTTGAGAAATTTGGGAATTTTAACATAGAGAAAGAGTGTCCAAAGTTTGTGGCATGGGCCAACAAATGTATATATAAAGATAGCGTCTCCAAATCTCTAGCGGAATCAAATAAAGTTTATGAGTATGTGTTAAAAATGAAACAACACCTTGGCCTTCCATAGAGAAATATATGAAGAAGCGCGCTCTATATTATGGTCTTTTCGTTCTATTCGTATAAACAGACTTGATGAAGTTCAGCTATGAAGATATTGTTACGTATGATAGTTGGTATGTTTTATTTTTTGAAAAGTTATGGAGTTGTCATAGAATAAATGTTGTTAATCTATACTTGTTTTTACGGTATGCTATTAAGGGATGGATGTCTTCTTGGTGTAATAAAACTACTTTAGGTAGAAAGGAGATTTTATAATATTATAAAACTTTTATT</gDNA_template>
            <first_frame> *  F  H  L  V  Y  I  F  *  L  Y  Q  K  M  S  N  E  V  V  L  L  S  A  Y  V  S  M  F  G  M  R  V  R  I  A  L  H  E  K  G  I  Q  Y  E  Y  K  E  E  D  L  S  N  K  S  E  L  L  L  Q  M  N  P  I  H  K  K  I  P  V  L  I  H  N  G  K  P  I  C  E  S  L  I  I  V  E  Y  I  D  E  V  W  K  D  K  S  P  L  M  P  F  N  P  Y  K  R  A  Q  A  R  F  W  A  D  F  I  D  K  K  :  V  Y  D  S  G  K  R  I  W  A  T  K  G  E  D  Q  E  A  A  K  K  E  F  I  E  Y  L  K  L  L  E  G  E  L  G  D  K  T  Y  F  N  G  E  N  F  G  F  V  D  L  A  L  I  P  F  Y  S  W  F  P  T  F  E  K  F  G  N  F  N  I  E  K  E  C  P  K  F  V  A  W  A  N  K  C  I  Y  K  D  S  V  S  K  S  L  A  E  S  N  K  V  Y  E  Y  V  L  K  M  K  Q  H  L  G  L  P  *  R  N  I  *  R  S  A  L  Y  I  M  V  F  S  F  Y  S  Y  K  Q  T  *  *  S  S  A  M  K  I  L  L  R  M  I  V  G  M  F  Y  F  L  K  S  Y  G  V  V  I  E  *  M  L  L  I  Y  T  C  F  Y  G  M  L  L  R  D  G  C  L  L  G  V  I  K  L  L  *  V  E  R  R  F  Y  N  I  I  K  L  L   </first_frame>
            <second_frame>  N  F  I  *  Y  I  S  F  N  Y  I  K  K  *  V  M  K  L  F  F  *  V  L  M  *  V  C  L  V  *  G  *  E  L  H  Y  M  K  K  G  F  N  M  N  I  K  R  K  I  *  V  I  K  V  N  F  Y  Y  K  *  I  Q  F  I  R  K  F  Q  C  *  F  I  M  E  N  Q  F  V  S  H  L  *  L  L  S  T  *  M  K  F  G  R  T  N  L  L  *  C  L  L  I  L  I  R  G  L  K  L  G  F  G  L  I  L  L  T  K  R :   S  M  I  A  E  R  E  Y  G  L  Q  K  E  K  I  K  R  Q  P  R  K  N  S  *  N  T  *  N  Y  W  K  E  N  *  E  I  R  H  I  S  M  E  K  I  L  D  L  W  I  W  L  *  F  L  S  I  V  G  S  Q  L  L  R  N  L  G  I  L  T  *  R  K  S  V  Q  S  L  W  H  G  P  T  N  V  Y  I  K  I  A  S  P  N  L  *  R  N  Q  I  K  F  M  S  M  C  *  K  *  N  N  T  L  A  F  H  R  E  I  Y  E  E  A  R  S  I  L  W  S  F  R  S  I  R  I  N  R  L  D  E  V  Q  L  *  R  Y  C  Y  V  *  *  L  V  C  F  I  F  *  K  V  M  E  L  S  *  N  K  C  C  *  S  I  L  V  F  T  V  C  Y  *  G  M  D  V  F  L  V  *  *  N  Y  F  R  *  K  G  D  F  I  I  L  *  N  F  Y  </second_frame>
            <third_frame>   I  S  S  S  I  Y  L  L  I  I  S  K  N  E  *  *  S  C  S  F  E  C  L  C  E  Y  V  W  Y  E  G  K  N  C  I  T  *  K  R  D  S  I  *  I  *  R  G  R  F  E  *  *  K  *  T  F  I  T  N  E  S  N  S  *  E  N  S  S  V  N  S  *  W  K  T  N  L  *  V  T  Y  N  C  *  V  H  R  *  S  L  E  G  Q  I  S  F  D  A  F  *  S  L  *  E  G  S  S  *  V  L  G  *  F  Y  *  Q  K   : G  L  *  *  R  K  E  N  M  G  Y  K  R  R  R  S  R  G  S  Q  E  R  I  H  R  I  P  K  T  I  G  R  R  I  R  R  *  D  I  F  Q  W  R  K  F  W  I  C  G  F  G  F  N  S  F  L  *  L  V  P  N  F  *  E  I  W  E  F  *  H  R  E  R  V  S  K  V  C  G  M  G  Q  Q  M  Y  I  *  R  *  R  L  Q  I  S  S  G  I  K  *  S  L  *  V  C  V  K  N  E  T  T  P  W  P  S  I  E  K  Y  M  K  K  R  A  L  Y  Y  G  L  F  V  L  F  V  *  T  D  L  M  K  F  S  Y  E  D  I  V  T  Y  D  S  W  Y  V  L  F  F  E  K  L  W  S  C  H  R  I  N  V  V  N  L  Y  L  F  L  R  Y  A  I  K  G  W  M  S  S  W  C  N  K  T  T  L  G  R  K  E  I  L  *  Y  Y  K  T  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27583" stop="27257"/>
                    <exon start="26703" stop="26359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQKMSNEVVLLSAYVSMFGMRVRIALHEKGIQYEYKEEDLSNKSELLLQMNPIHKKIPVLIHNGKPICESLIIVEYIDEVWKDKSPLMPFNPYKRAQARFWADFIDKKVYDSGKRIWATKGEDQEAAKKEFIEYLKLLEGELGDKTYFNGENFGFVDLALIPFYSWFPTFEKFGNFNIEKECPKFVAWANKCIYKDSVSKSLAESNKVYEYVLKMKQHLGLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29972" PGL_stop="28408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29972" e_stop="29564"/>
            <exon e_start="29036" e_stop="28408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.242" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29972" e_stop="29564" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.242">
            <gDNA_intron_boundary i_start="29563" i_stop="29037" i_length="527"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="29036" e_stop="28408" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29972" stop="29564"/>
              <exon start="29036" stop="28408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATCACAAAAACCCTCAACACTCTTAATTACCTCTTCTTCTTACAAGTCTACTAATATCCCTAACTTTTCAACAAAAAAAAAAACATGACACAAGAAGAAGAAGTTGTACTTTTAGATTATTGGGCTAGTCCTTTTGGAACAATGGCAAGAATTGCCCTAGTTGAAAAGGGAGTCAATTTCATCCACAAGTTTGAGGATTTGTCTAATAAAAGTCCTTTGCTTTTGGAAATGAACCCGGTTCATCACAAAATACCGGTTCTTGTTCACAAGGGTAAATCTATTTGTGAATCAAATATCATTATTCAATATATTGATGAGATTTGGAAAAATAATTCTCCCTTATTGCCCTATGAACCTTATCAAAGAGCTAAAGCTAGGTTCTTGGTTGACTTTATCAATAAAAAG : GTACATGGGTCAAGTGTAAAGGTATGGATGGGGCAAATTGAAGAGCAAGAAAATGGCAAGAAAGAACTTGTAGAATGTTCAAAGTTTTTGGAAGAAGAACTTGGAGATAAACTTTATTTTGGAGGAGATGTATTTGGATTTGTAGACATTGCACTTGTTCCTTTCTACAATTGGTTCATTGTCTTCAAGACCTTTGCAAATTTCAACACAATTGAAATACAATGCCCCAAGTTAGTGATGTGGGGAGAAAGGTGTTTGAATAGAGACTCAGTATCCAAGTCACTTCCTACTTCAAATCAAGTCTACCAAGCTTATTTGGATTTCAAGAAAGGTTGGTGATCACATGGTTAATAAATATCGAGATGGATTCAGAATTTTATATTTTAATGATTGGATATCATATCACTTATTTTGAGATGGGATCATATAATGAGTTGTGAGAGGGTCTAATAATTTAACGTCTACCTTATTAGTCGATACATTTGCATATTGAAGTAACGTAAATGATAAATATGAATATTAATTGATAAAAAGTGTATTTATATGAAAGAACATGAGTTCACTATCTATGTATTCATCTTCCTTGTAATAATACTAGTCGATACGATTAAATGTTGAAATCACGTAAA</gDNA_template>
            <first_frame> K  N  H  K  N  P  Q  H  S  *  L  P  L  L  L  T  S  L  L  I  S  L  T  F  Q  Q  K  K  K  H  D  T  R  R  R  S  C  T  F  R  L  L  G  *  S  F  W  N  N  G  K  N  C  P  S  *  K  G  S  Q  F  H  P  Q  V  *  G  F  V  *  *  K  S  F  A  F  G  N  E  P  G  S  S  Q  N  T  G  S  C  S  Q  G  *  I  Y  L  *  I  K  Y  H  Y  S  I  Y  *  *  D  L  E  K  *  F  S  L  I  A  L  *  T  L  S  K  S  *  S  *  V  L  G  *  L  Y  Q  *  K   : G  T  W  V  K  C  K  G  M  D  G  A  N  *  R  A  R  K  W  Q  E  R  T  C  R  M  F  K  V  F  G  R  R  T  W  R  *  T  L  F  W  R  R  C  I  W  I  C  R  H  C  T  C  S  F  L  Q  L  V  H  C  L  Q  D  L  C  K  F  Q  H  N  *  N  T  M  P  Q  V  S  D  V  G  R  K  V  F  E  *  R  L  S  I  Q  V  T  S  Y  F  K  S  S  L  P  S  L  F  G  F  Q  E  R  L  V  I  T  W  L  I  N  I  E  M  D  S  E  F  Y  I  L  M  I  G  Y  H  I  T  Y  F  E  M  G  S  Y  N  E  L  *  E  G  L  I  I  *  R  L  P  Y  *  S  I  H  L  H  I  E  V  T  *  M  I  N  M  N  I  N  *  *  K  V  Y  L  Y  E  R  T  *  V  H  Y  L  C  I  H  L  P  C  N  N  T  S  R  Y  D  *  M  L  K  S  R  K </first_frame>
            <second_frame>  R  I  T  K  T  L  N  T  L  N  Y  L  F  F  L  Q  V  Y  *  Y  P  *  L  F  N  K  K  K  N  M  T  Q  E  E  E  V  V  L  L  D  Y  W  A  S  P  F  G  T  M  A  R  I  A  L  V  E  K  G  V  N  F  I  H  K  F  E  D  L  S  N  K  S  P  L  L  L  E  M  N  P  V  H  H  K  I  P  V  L  V  H  K  G  K  S  I  C  E  S  N  I  I  I  Q  Y  I  D  E  I  W  K  N  N  S  P  L  L  P  Y  E  P  Y  Q  R  A  K  A  R  F  L  V  D  F  I  N  K  K  :  V  H  G  S  S  V  K  V  W  M  G  Q  I  E  E  Q  E  N  G  K  K  E  L  V  E  C  S  K  F  L  E  E  E  L  G  D  K  L  Y  F  G  G  D  V  F  G  F  V  D  I  A  L  V  P  F  Y  N  W  F  I  V  F  K  T  F  A  N  F  N  T  I  E  I  Q  C  P  K  L  V  M  W  G  E  R  C  L  N  R  D  S  V  S  K  S  L  P  T  S  N  Q  V  Y  Q  A  Y  L  D  F  K  K  G  W  *  S  H  G  *  *  I  S  R  W  I  Q  N  F  I  F  *  *  L  D  I  I  S  L  I  L  R  W  D  H  I  M  S  C  E  R  V  *  *  F  N  V  Y  L  I  S  R  Y  I  C  I  L  K  *  R  K  *  *  I  *  I  L  I  D  K  K  C  I  Y  M  K  E  H  E  F  T  I  Y  V  F  I  F  L  V  I  I  L  V  D  T  I  K  C  *  N  H  V   </second_frame>
            <third_frame>   E  S  Q  K  P  S  T  L  L  I  T  S  S  S  Y  K  S  T  N  I  P  N  F  S  T  K  K  K  T  *  H  K  K  K  K  L  Y  F  *  I  I  G  L  V  L  L  E  Q  W  Q  E  L  P  *  L  K  R  E  S  I  S  S  T  S  L  R  I  C  L  I  K  V  L  C  F  W  K  *  T  R  F  I  T  K  Y  R  F  L  F  T  R  V  N  L  F  V  N  Q  I  S  L  F  N  I  L  M  R  F  G  K  I  I  L  P  Y  C  P  M  N  L  I  K  E  L  K  L  G  S  W  L  T  L  S  I  K  R :   Y  M  G  Q  V  *  R  Y  G  W  G  K  L  K  S  K  K  M  A  R  K  N  L  *  N  V  Q  S  F  W  K  K  N  L  E  I  N  F  I  L  E  E  M  Y  L  D  L  *  T  L  H  L  F  L  S  T  I  G  S  L  S  S  R  P  L  Q  I  S  T  Q  L  K  Y  N  A  P  S  *  *  C  G  E  K  G  V  *  I  E  T  Q  Y  P  S  H  F  L  L  Q  I  K  S  T  K  L  I  W  I  S  R  K  V  G  D  H  M  V  N  K  Y  R  D  G  F  R  I  L  Y  F  N  D  W  I  S  Y  H  L  F  *  D  G  I  I  *  *  V  V  R  G  S  N  N  L  T  S  T  L  L  V  D  T  F  A  Y  *  S  N  V  N  D  K  Y  E  Y  *  L  I  K  S  V  F  I  *  K  N  M  S  S  L  S  M  Y  S  S  S  L  *  *  Y  *  S  I  R  L  N  V  E  I  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29905" stop="29564"/>
                    <exon start="29036" stop="28698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNKKKNMTQEEEVVLLDYWASPFGTMARIALVEKGVNFIHKFEDLSNKSPLLLEMNPVHHKIPVLVHKGKSICESNIIIQYIDEIWKNNSPLLPYEPYQRAKARFLVDFINKKVHGSSVKVWMGQIEEQENGKKELVECSKFLEEELGDKLYFGGDVFGFVDIALVPFYNWFIVFKTFANFNTIEIQCPKLVMWGERCLNRDSVSKSLPTSNQVYQAYLDFKKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31233" PGL_stop="41776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31233" e_stop="31351"/>
            <exon e_start="35333" e_stop="36250"/>
            <exon e_start="37650" e_stop="38018"/>
            <exon e_start="38161" e_stop="38427"/>
            <exon e_start="38558" e_stop="38685"/>
            <exon e_start="38829" e_stop="39026"/>
            <exon e_start="40986" e_stop="41661"/>
            <exon e_start="41749" e_stop="41776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="31233" e_stop="31351" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="31352" i_stop="35332" i_length="3981"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="35333" e_stop="36250" e_length="918"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="36251" i_stop="37649" i_length="1399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37650" e_stop="38018" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38019" i_stop="38160" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38161" e_stop="38427" e_length="267"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38428" i_stop="38557" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38558" e_stop="38685" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.852">
            <gDNA_intron_boundary i_start="38686" i_stop="38828" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38829" e_stop="39026" e_length="198"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="39027" i_stop="40985" i_length="1959"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="40986" e_stop="41661" e_length="676"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41662" i_stop="41748" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.643">
            <gDNA_exon_boundary e_start="41749" e_stop="41776" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31233" stop="31351"/>
              <exon start="35333" stop="36250"/>
              <exon start="37650" stop="38018"/>
              <exon start="38161" stop="38427"/>
              <exon start="38558" stop="38685"/>
              <exon start="38829" stop="39026"/>
              <exon start="40986" stop="41661"/>
              <exon start="41749" stop="41776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCCAACTCCATTGTTTCACTTTCCCTTTTGATCATCATCAATCTTCATCACTTTTTTTCGCCCCAATTTTTTTTTTTTTTGGCCACGATGGGATCTCTTCTCCGGATGAATCGCCTT : TTATCTTCCATCGTGGAGTCATGTAACTGCATCATTGACCCACAGTTGCCTGCTGACGACTTGCTAATGAAGTATCAGTACATTTCTGATTTTTTCATAGCACTTGCTTATTTCTCCATTCCAGTGGAGTTGATATACTTCGTTAAGAAGTCTGCTGTCTTTCCATATAGATGGGTTCTTGTGCAGTTCGGTGCTTTCATAGTTCTTTGTGGAGCAACCCATCTTATCAACTTATGGACATTTAATATGCATACAAGGAATGTGGCAATAGTAATGACTACTGCAAAGGCCTTGACTGCACTGGTGTCATGTATAACTGCTCTCATGCTTGTCCACATCATTCCTGATTTATTAAGTGTCAAAACTAGAGAACTGTTCTTGAAAAAGAAAGCTGCACAGCTTGACCGTGAAATGGGTATTATTCGGACTCAGGAGGAGACAGGTAGACATGTTAGAATGCTAACTCATGAAATCCGAAGCACTCTTGATAGACATACTATTTTAAAGACTACACTTGTTGAGCTAGGAAGAACATTGGCATTGGAAGAGTGTGCATTATGGATGCCAACACGTACTGGACTAGAGCTTCAGCTTTCTTACACTTTACGACACCAAAATCCAGTTGGATTAACTGTACCCATTCAACTTCCTGTAATCAATCAAGTTTTCGGTACAAATCATGTCGTGAAAATATCACCAAATTCTCCTGTCGCAAGACTTCGACCTGCTGGGAAATACATGCCTGGTGAGGTGGTTGCTGTCAGGGTTCCACTTCTGCATCTGTCGAACTTTCAGATTAATGATTGGCCTGAACTTTCAACAAAGCGCTATGCTTTAATGGTTCTGATGCTTCCTTCAGACAGTGCAAGACAATGGCATGTTCATGAGCTGGAGCTTGTTGAAGTGGTAGCTGATCAG : GTTGCTGTTGCTCTTTCACATGCTGCTATATTAGAAGAATCAATGAGGGCTAGGGATCTTCTTATGGAGCAGAATGTGGCTCTTGATCTGGCAAGAAGAGAAGCAGAAATGGCTGTTCGTGCACGTAATGATTTCTTGGCTGTTATGAATCATGAAATGAGAACTCCCATGCATGCAATAATTGCACTTTCTTCCTTACTACAAGAAACTGATCTAACTCCAGAGCAACGTCTGATGGTTGAAACAATCCTCAAAAGCAGCAACCTTTTAGCAACGCTCATCAACGATGTCTTGGATCTTTCAAGGCTAGAGGATGGAAGTCTTCAACTTGATATTGGCACTTTCAATCTCCATGCTTTATTTAGAGAG : GTCCATAGCTTAATCAAGCCTATTGCATCTGTGAAAAAGCTGTTCGTCACACTTAGTTTGTCGTCAGATTTGCCGGAATATGTAATTGGGGATGAAAAACGGTTAATGCAAATTCTCTTAAACGTTGTTGGCAATGCTGTAAAGTTCTCAAAGGAAGGCAACGTATCAATCTCCGCTTTTGTTGCAAAATCAGACTCTTTAAGAGATCCTAGAGCCCCTGAATTTTTTGCTGTGCCTAGTGAAAATCACTTCTATTTACGGGTGCAG : ATAAAAGATACGGGGATAGGAATTACACCACAGGATATTCCCAACCTGTTTAGCAAGTTTACACAAAGCCAAGCGCTAGCAACTACAAATTCTGGTGGCACTGGGCTTGGTCTTGCAATTTGTAAGAG : GTTTGTGAATCTTATGGAAGGACATATTTGGATTGAAAGTGAAGGTCTTGGCAAGGGGTCTACTGCTATATTTATCATTAAACTTGGCATTCCTGGACGTGCAAATGAATCTAAGCTCCCCTTTGTGACCAAATTGCCAGCAAATCACACGCAGATGAGTTTTCAAGGATTAAAGGTTTTGGTGATGGATGAGAATGG : TGTTAGCAGGATGGTAACCAAAGGTCTGCTTACACACCTTGGATGTGATGTAACTACTGTTGGCTCACGCGATGAGTGCTTGAGAGTTGTTACACATGAACACAAGGTAGTTATCATGGATGTCAGCATGCAAGGTATAGACTGTTACGAAGTTGCTGTAGTGATACATGAAAGGTTTGGGAAACGTCACGGTAGGCCACTTATTGTGGCATTAACGGGGAACACAGACAGAGTTACGAAAGAAAACTGCATGAGAGTTGGTATGGATGGAGTTATCCTAAAACCTGTGTCAGTGTATAAAATGAGAAGTGTTTTATCTGAGCTCTTAGAACATGGAGTTGTACTTGAATCTTAGTGAATGTAGGAGGAAAATATGCAGCAACCATATGAAAAATTCACCCAAATGCACGAGGCGTTGTATATAGTTCTCGTCTTTGGATTTCTTGGTGGATAACACAATATATCACTTGAAGAAGGTGTATGTAACGCGACGTTGCTCGAGGCATTCAACAAATTTGTAGAAAGGAGTTGATTTTTCCACTACCAGAAGTGTTCATATTCCATGGAACTTTGTATAAGATACTGATATTTGACACAACCCTTCATTTACTTGAAACATTAGAAACTTTATTGCCTTGGCTTGACACAACAATAGATTATTATGTGTTTTTTTTTA : AGAAGCAAACAGCAAATAACAAAACTAA</gDNA_template>
            <first_frame> *  P  T  P  L  F  H  F  P  F  *  S  S  S  I  F  I  T  F  F  R  P  N  F  F  F  F  W  P  R  W  D  L  F  S  G  *  I  A  F :   Y  L  P  S  W  S  H  V  T  A  S  L  T  H  S  C  L  L  T  T  C  *  *  S  I  S  T  F  L  I  F  S  *  H  L  L  I  S  P  F  Q  W  S  *  Y  T  S  L  R  S  L  L  S  F  H  I  D  G  F  L  C  S  S  V  L  S  *  F  F  V  E  Q  P  I  L  S  T  Y  G  H  L  I  C  I  Q  G  M  W  Q  *  *  *  L  L  Q  R  P  *  L  H  W  C  H  V  *  L  L  S  C  L  S  T  S  F  L  I  Y  *  V  S  K  L  E  N  C  S  *  K  R  K  L  H  S  L  T  V  K  W  V  L  F  G  L  R  R  R  Q  V  D  M  L  E  C  *  L  M  K  S  E  A  L  L  I  D  I  L  F  *  R  L  H  L  L  S  *  E  E  H  W  H  W  K  S  V  H  Y  G  C  Q  H  V  L  D  *  S  F  S  F  L  T  L  Y  D  T  K  I  Q  L  D  *  L  Y  P  F  N  F  L  *  S  I  K  F  S  V  Q  I  M  S  *  K  Y  H  Q  I  L  L  S  Q  D  F  D  L  L  G  N  T  C  L  V  R  W  L  L  S  G  F  H  F  C  I  C  R  T  F  R  L  M  I  G  L  N  F  Q  Q  S  A  M  L  *  W  F  *  C  F  L  Q  T  V  Q  D  N  G  M  F  M  S  W  S  L  L  K  W  *  L  I  R :   L  L  L  L  F  H  M  L  L  Y  *  K  N  Q  *  G  L  G  I  F  L  W  S  R  M  W  L  L  I  W  Q  E  E  K  Q  K  W  L  F  V  H  V  M  I  S  W  L  L  *  I  M  K  *  E  L  P  C  M  Q  *  L  H  F  L  P  Y  Y  K  K  L  I  *  L  Q  S  N  V  *  W  L  K  Q  S  S  K  A  A  T  F  *  Q  R  S  S  T  M  S  W  I  F  Q  G  *  R  M  E  V  F  N  L  I  L  A  L  S  I  S  M  L  Y  L  E  R :   S  I  A  *  S  S  L  L  H  L  *  K  S  C  S  S  H  L  V  C  R  Q  I  C  R  N  M  *  L  G  M  K  N  G  *  C  K  F  S  *  T  L  L  A  M  L  *  S  S  Q  R  K  A  T  Y  Q  S  P  L  L  L  Q  N  Q  T  L  *  E  I  L  E  P  L  N  F  L  L  C  L  V  K  I  T  S  I  Y  G  C  R :   *  K  I  R  G  *  E  L  H  H  R  I  F  P  T  C  L  A  S  L  H  K  A  K  R  *  Q  L  Q  I  L  V  A  L  G  L  V  L  Q  F  V  R   : G  L  *  I  L  W  K  D  I  F  G  L  K  V  K  V  L  A  R  G  L  L  L  Y  L  S  L  N  L  A  F  L  D  V  Q  M  N  L  S  S  P  L  *  P  N  C  Q  Q  I  T  R  R  *  V  F  K  D  *  R  F  W  *  W  M  R  M   : V  L  A  G  W  *  P  K  V  C  L  H  T  L  D  V  M  *  L  L  L  A  H  A  M  S  A  *  E  L  L  H  M  N  T  R  *  L  S  W  M  S  A  C  K  V  *  T  V  T  K  L  L  *  *  Y  M  K  G  L  G  N  V  T  V  G  H  L  L  W  H  *  R  G  T  Q  T  E  L  R  K  K  T  A  *  E  L  V  W  M  E  L  S  *  N  L  C  Q  C  I  K  *  E  V  F  Y  L  S  S  *  N  M  E  L  Y  L  N  L  S  E  C  R  R  K  I  C  S  N  H  M  K  N  S  P  K  C  T  R  R  C  I  *  F  S  S  L  D  F  L  V  D  N  T  I  Y  H  L  K  K  V  Y  V  T  R  R  C  S  R  H  S  T  N  L  *  K  G  V  D  F  S  T  T  R  S  V  H  I  P  W  N  F  V  *  D  T  D  I  *  H  N  P  S  F  T  *  N  I  R  N  F  I  A  L  A  *  H  N  N  R  L  L  C  V  F  F  * :   E  A  N  S  K  *  Q  N  * </first_frame>
            <second_frame>  S  Q  L  H  C  F  T  F  P  F  D  H  H  Q  S  S  S  L  F  F  A  P  I  F  F  F  F  G  H  D  G  I  S  S  P  D  E  S  P   : F  I  F  H  R  G  V  M  *  L  H  H  *  P  T  V  A  C  *  R  L  A  N  E  V  S  V  H  F  *  F  F  H  S  T  C  L  F  L  H  S  S  G  V  D  I  L  R  *  E  V  C  C  L  S  I  *  M  G  S  C  A  V  R  C  F  H  S  S  L  W  S  N  P  S  Y  Q  L  M  D  I  *  Y  A  Y  K  E  C  G  N  S  N  D  Y  C  K  G  L  D  C  T  G  V  M  Y  N  C  S  H  A  C  P  H  H  S  *  F  I  K  C  Q  N  *  R  T  V  L  E  K  E  S  C  T  A  *  P  *  N  G  Y  Y  S  D  S  G  G  D  R  *  T  C  *  N  A  N  S  *  N  P  K  H  S  *  *  T  Y  Y  F  K  D  Y  T  C  *  A  R  K  N  I  G  I  G  R  V  C  I  M  D  A  N  T  Y  W  T  R  A  S  A  F  L  H  F  T  T  P  K  S  S  W  I  N  C  T  H  S  T  S  C  N  Q  S  S  F  R  Y  K  S  C  R  E  N  I  T  K  F  S  C  R  K  T  S  T  C  W  E  I  H  A  W  *  G  G  C  C  Q  G  S  T  S  A  S  V  E  L  S  D  *  *  L  A  *  T  F  N  K  A  L  C  F  N  G  S  D  A  S  F  R  Q  C  K  T  M  A  C  S  *  A  G  A  C  *  S  G  S  *  S   : G  C  C  C  S  F  T  C  C  Y  I  R  R  I  N  E  G  *  G  S  S  Y  G  A  E  C  G  S  *  S  G  K  K  R  S  R  N  G  C  S  C  T  *  *  F  L  G  C  Y  E  S  *  N  E  N  S  H  A  C  N  N  C  T  F  F  L  T  T  R  N  *  S  N  S  R  A  T  S  D  G  *  N  N  P  Q  K  Q  Q  P  F  S  N  A  H  Q  R  C  L  G  S  F  K  A  R  G  W  K  S  S  T  *  Y  W  H  F  Q  S  P  C  F  I  *  R   : G  P  *  L  N  Q  A  Y  C  I  C  E  K  A  V  R  H  T  *  F  V  V  R  F  A  G  I  C  N  W  G  *  K  T  V  N  A  N  S  L  K  R  C  W  Q  C  C  K  V  L  K  G  R  Q  R  I  N  L  R  F  C  C  K  I  R  L  F  K  R  S  *  S  P  *  I  F  C  C  A  *  *  K  S  L  L  F  T  G  A   : D  K  R  Y  G  D  R  N  Y  T  T  G  Y  S  Q  P  V  *  Q  V  Y  T  K  P  S  A  S  N  Y  K  F  W  W  H  W  A  W  S  C  N  L  *  E  :  V  C  E  S  Y  G  R  T  Y  L  D  *  K  *  R  S  W  Q  G  V  Y  C  Y  I  Y  H  *  T  W  H  S  W  T  C  K  *  I  *  A  P  L  C  D  Q  I  A  S  K  S  H  A  D  E  F  S  R  I  K  G  F  G  D  G  *  E  W  :  C  *  Q  D  G  N  Q  R  S  A  Y  T  P  W  M  *  C  N  Y  C  W  L  T  R  *  V  L  E  S  C  Y  T  *  T  Q  G  S  Y  H  G  C  Q  H  A  R  Y  R  L  L  R  S  C  C  S  D  T  *  K  V  W  E  T  S  R  *  A  T  Y  C  G  I  N  G  E  H  R  Q  S  Y  E  R  K  L  H  E  S  W  Y  G  W  S  Y  P  K  T  C  V  S  V  *  N  E  K  C  F  I  *  A  L  R  T  W  S  C  T  *  I  L  V  N  V  G  G  K  Y  A  A  T  I  *  K  I  H  P  N  A  R  G  V  V  Y  S  S  R  L  W  I  S  W  W  I  T  Q  Y  I  T  *  R  R  C  M  *  R  D  V  A  R  G  I  Q  Q  I  C  R  K  E  L  I  F  P  L  P  E  V  F  I  F  H  G  T  L  Y  K  I  L  I  F  D  T  T  L  H  L  L  E  T  L  E  T  L  L  P  W  L  D  T  T  I  D  Y  Y  V  F  F  F   : K  K  Q  T  A  N  N  K  T   </second_frame>
            <third_frame>   A  N  S  I  V  S  L  S  L  L  I  I  I  N  L  H  H  F  F  S  P  Q  F  F  F  F  L  A  T  M  G  S  L  L  R  M  N  R  L  :  L  S  S  I  V  E  S  C  N  C  I  I  D  P  Q  L  P  A  D  D  L  L  M  K  Y  Q  Y  I  S  D  F  F  I  A  L  A  Y  F  S  I  P  V  E  L  I  Y  F  V  K  K  S  A  V  F  P  Y  R  W  V  L  V  Q  F  G  A  F  I  V  L  C  G  A  T  H  L  I  N  L  W  T  F  N  M  H  T  R  N  V  A  I  V  M  T  T  A  K  A  L  T  A  L  V  S  C  I  T  A  L  M  L  V  H  I  I  P  D  L  L  S  V  K  T  R  E  L  F  L  K  K  K  A  A  Q  L  D  R  E  M  G  I  I  R  T  Q  E  E  T  G  R  H  V  R  M  L  T  H  E  I  R  S  T  L  D  R  H  T  I  L  K  T  T  L  V  E  L  G  R  T  L  A  L  E  E  C  A  L  W  M  P  T  R  T  G  L  E  L  Q  L  S  Y  T  L  R  H  Q  N  P  V  G  L  T  V  P  I  Q  L  P  V  I  N  Q  V  F  G  T  N  H  V  V  K  I  S  P  N  S  P  V  A  R  L  R  P  A  G  K  Y  M  P  G  E  V  V  A  V  R  V  P  L  L  H  L  S  N  F  Q  I  N  D  W  P  E  L  S  T  K  R  Y  A  L  M  V  L  M  L  P  S  D  S  A  R  Q  W  H  V  H  E  L  E  L  V  E  V  V  A  D  Q  :  V  A  V  A  L  S  H  A  A  I  L  E  E  S  M  R  A  R  D  L  L  M  E  Q  N  V  A  L  D  L  A  R  R  E  A  E  M  A  V  R  A  R  N  D  F  L  A  V  M  N  H  E  M  R  T  P  M  H  A  I  I  A  L  S  S  L  L  Q  E  T  D  L  T  P  E  Q  R  L  M  V  E  T  I  L  K  S  S  N  L  L  A  T  L  I  N  D  V  L  D  L  S  R  L  E  D  G  S  L  Q  L  D  I  G  T  F  N  L  H  A  L  F  R  E  :  V  H  S  L  I  K  P  I  A  S  V  K  K  L  F  V  T  L  S  L  S  S  D  L  P  E  Y  V  I  G  D  E  K  R  L  M  Q  I  L  L  N  V  V  G  N  A  V  K  F  S  K  E  G  N  V  S  I  S  A  F  V  A  K  S  D  S  L  R  D  P  R  A  P  E  F  F  A  V  P  S  E  N  H  F  Y  L  R  V  Q  :  I  K  D  T  G  I  G  I  T  P  Q  D  I  P  N  L  F  S  K  F  T  Q  S  Q  A  L  A  T  T  N  S  G  G  T  G  L  G  L  A  I  C  K  R :   F  V  N  L  M  E  G  H  I  W  I  E  S  E  G  L  G  K  G  S  T  A  I  F  I  I  K  L  G  I  P  G  R  A  N  E  S  K  L  P  F  V  T  K  L  P  A  N  H  T  Q  M  S  F  Q  G  L  K  V  L  V  M  D  E  N  G :   V  S  R  M  V  T  K  G  L  L  T  H  L  G  C  D  V  T  T  V  G  S  R  D  E  C  L  R  V  V  T  H  E  H  K  V  V  I  M  D  V  S  M  Q  G  I  D  C  Y  E  V  A  V  V  I  H  E  R  F  G  K  R  H  G  R  P  L  I  V  A  L  T  G  N  T  D  R  V  T  K  E  N  C  M  R  V  G  M  D  G  V  I  L  K  P  V  S  V  Y  K  M  R  S  V  L  S  E  L  L  E  H  G  V  V  L  E  S  *  *  M  *  E  E  N  M  Q  Q  P  Y  E  K  F  T  Q  M  H  E  A  L  Y  I  V  L  V  F  G  F  L  G  G  *  H  N  I  S  L  E  E  G  V  C  N  A  T  L  L  E  A  F  N  K  F  V  E  R  S  *  F  F  H  Y  Q  K  C  S  Y  S  M  E  L  C  I  R  Y  *  Y  L  T  Q  P  F  I  Y  L  K  H  *  K  L  Y  C  L  G  L  T  Q  Q  *  I  I  M  C  F  F  L  :  R  S  K  Q  Q  I  T  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31235" stop="31351"/>
                    <exon start="35333" stop="36250"/>
                    <exon start="37650" stop="38018"/>
                    <exon start="38161" stop="38427"/>
                    <exon start="38558" stop="38685"/>
                    <exon start="38829" stop="39026"/>
                    <exon start="40986" stop="41340"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2349</number_coding_nucleotides>
                  <number_encoded_amino_acids>783</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSIVSLSLLIIINLHHFFSPQFFFFLATMGSLLRMNRLLSSIVESCNCIIDPQLPADDLLMKYQYISDFFIALAYFSIPVELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHTRNVAIVMTTAKALTALVSCITALMLVHIIPDLLSVKTRELFLKKKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRHQNPVGLTVPIQLPVINQVFGTNHVVKISPNSPVARLRPAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETDLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQALATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFIIKLGIPGRANESKLPFVTKLPANHTQMSFQGLKVLVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVVTHEHKVVIMDVSMQGIDCYEVAVVIHERFGKRHGRPLIVALTGNTDRVTKENCMRVGMDGVILKPVSVYKMRSVLSELLEHGVVLES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41472" stop="41661"/>
                    <exon start="41749" stop="41774"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDVARGIQQICRKELIFPLPEVFIFHGTLYKILIFDTTLHLLETLETLLPWLDTTIDYYVFFFKKQTANNKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48395" PGL_stop="56627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48395" e_stop="49041"/>
            <exon e_start="50791" e_stop="50901"/>
            <exon e_start="50988" e_stop="51032"/>
            <exon e_start="53049" e_stop="53121"/>
            <exon e_start="53200" e_stop="53312"/>
            <exon e_start="53498" e_stop="53557"/>
            <exon e_start="53738" e_stop="53785"/>
            <exon e_start="53856" e_stop="53924"/>
            <exon e_start="54790" e_stop="54851"/>
            <exon e_start="55742" e_stop="56080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.306" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48395" e_stop="49041" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49042" i_stop="50790" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50791" e_stop="50901" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50902" i_stop="50987" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50988" e_stop="51032" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51033" i_stop="53048" i_length="2016"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53049" e_stop="53121" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.306" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53122" i_stop="53199" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53200" e_stop="53312" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.985">
            <gDNA_intron_boundary i_start="53313" i_stop="53497" i_length="185"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53498" e_stop="53557" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="53558" i_stop="53737" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53738" e_stop="53785" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53786" i_stop="53855" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53856" e_stop="53924" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53925" i_stop="54789" i_length="865"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54790" e_stop="54851" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54852" i_stop="55741" i_length="890"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="55742" e_stop="56080" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48395" stop="49041"/>
              <exon start="50791" stop="50901"/>
              <exon start="50988" stop="51032"/>
              <exon start="53049" stop="53121"/>
              <exon start="53200" stop="53312"/>
              <exon start="53498" stop="53557"/>
              <exon start="53738" stop="53785"/>
              <exon start="53856" stop="53924"/>
              <exon start="54790" stop="54851"/>
              <exon start="55742" stop="56080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48480" stop="48778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCTCTGCCTTCTGTTATTGAAATTTGTTGCTATATATATAACAAAAACCCTATTGCTTTTTTGCTTTCTCTCTCTTCTTTTCTCTCTCATCACCATCTTCCTAAATGAGTATTTATCAATAAACCCATTATGCTCTGTGAATTCCTCATTTGATTGATTTTTCATAAAGAATAATCAAATTGGTGAAAAGGGGTTGCTTTAATTTATTGAAATTGTAGAATTTTAGTGTTTTCTTGGTATTTCTGAAGCTTTTTCTGTTCTGGGTGTGTTTTTATTTTTTTGTGGGTTTTGAGTATTTTCATCAATGGCTGCTGGTGCTAAAGAAGTGTCTGGTGAGACAACAGTGGTTGAAGCTCCTGCTGTTCAGTCTTTATCATCACCAAACACTGATAACACCAGCAATAATTCTGAATCTAATGGTGTTAAGGATTCATCCGATTCAATCGCAAATGCGAAATCGGAGTTTCATATGCATGATATTGCTGATATGTTGAAGAAACTTAAGCTGAATCCACAGGCTAAGGAGTTTTTTCCTTCTTCTTATAATCGTGGTACTGTTGGTGCTGGTGATCAGATGATTCTCAGTAACTTTGTACCAGCTAACAAGACTACGGGGGGTGATGGTTTTCAAAACAACAGAAGG : AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT : GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA : GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT : ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGGTTTCTCTCAATTGAAGGTCCTACCTTCAAAAACTGCTATTCTACCCGTGAATCCTACATTCCTTCCAAGG : TCAGAGGATGAGCGTGAAATGTGTGCCAGGACTGTCTATTGTACAAATATTGATAAGAAG : GTTACTCAGGCTGATGTCAAGAATTTTTTTGAAACCAGATGTGGCGAG : GTTTCTCGCCTGAGGCTTTTGGGAGATCACGTGCACTCGACCCGCATTGCTTTTGTTGAGTTTGTAATG : GCTGAGAGTGCAATTTTGGCTTTAGACTGTTGCGGTGAGGTATTGGGATCCCAGCGCATCAG : GGTGAGTCCCTCAAAAACACCAGTGAGGCCCCGACTTCCGCGTGCCATGATGCAGTAAGCCAATGTGTGTGCTCATGGACCTGGAGAAAGAGTTCAAAGACAAAAACCCCCCTCGGAAGACTTGAGGTCACCATGGGAAAAATCGAAACAAAAATTCTGTTTCAGTAATCTCCATGTTCTCTCTTTTCATGTTCCTTTCTTTACTGCCTACAGTAACTTATGCTACCAGAAAACAACGTAGCCATCGAGCCAACGATTTTTAAATTGGAATTTCCGCACTTGTACTACTTTTACCTTGATCGATCGTTCCTCTATGAATCTCTTGATGTTCCTCTATGA</gDNA_template>
            <first_frame> N  S  S  A  F  C  Y  *  N  L  L  L  Y  I  *  Q  K  P  Y  C  F  F  A  F  S  L  F  F  S  L  S  S  P  S  S  *  M  S  I  Y  Q  *  T  H  Y  A  L  *  I  P  H  L  I  D  F  S  *  R  I  I  K  L  V  K  R  G  C  F  N  L  L  K  L  *  N  F  S  V  F  L  V  F  L  K  L  F  L  F  W  V  C  F  Y  F  F  V  G  F  E  Y  F  H  Q  W  L  L  V  L  K  K  C  L  V  R  Q  Q  W  L  K  L  L  L  F  S  L  Y  H  H  Q  T  L  I  T  P  A  I  I  L  N  L  M  V  L  R  I  H  P  I  Q  S  Q  M  R  N  R  S  F  I  C  M  I  L  L  I  C  *  R  N  L  S  *  I  H  R  L  R  S  F  F  L  L  L  I  I  V  V  L  L  V  L  V  I  R  *  F  S  V  T  L  Y  Q  L  T  R  L  R  G  V  M  V  F  K  T  T  E  G :   E  A  A  T  L  T  R  G  K  G  G  *  T  I  E  L  I  R  L  K  E  K  I  A  S  G  E  Q  Y  M  F  L  R  *  I  A  M :   S  L  R  S  N  L  L  L  C  L  V  L  M  D  K :   L  L  T  A  E  F  V  V  I  H  I  L  V  F  V  L  L  S  W  S  L  L  M  S  :  T  L  Q  E  Q  H  F  A  F  V  G  Q  F  *  V  S  L  N  *  R  S  Y  L  Q  K  L  L  F  Y  P  *  I  L  H  S  F  Q  G :   Q  R  M  S  V  K  C  V  P  G  L  S  I  V  Q  I  L  I  R  R :   L  L  R  L  M  S  R  I  F  L  K  P  D  V  A  R :   F  L  A  *  G  F  W  E  I  T  C  T  R  P  A  L  L  L  L  S  L  *  W :   L  R  V  Q  F  W  L  *  T  V  A  V  R  Y  W  D  P  S  A  S   : G  *  V  P  Q  K  H  Q  *  G  P  D  F  R  V  P  *  C  S  K  P  M  C  V  L  M  D  L  E  K  E  F  K  D  K  N  P  P  R  K  T  *  G  H  H  G  K  N  R  N  K  N  S  V  S  V  I  S  M  F  S  L  F  M  F  L  S  L  L  P  T  V  T  Y  A  T  R  K  Q  R  S  H  R  A  N  D  F  *  I  G  I  S  A  L  V  L  L  L  P  *  S  I  V  P  L  *  I  S  *  C  S  S  M  </first_frame>
            <second_frame>  I  P  L  P  S  V  I  E  I  C  C  Y  I  Y  N  K  N  P  I  A  F  L  L  S  L  S  S  F  L  S  H  H  H  L  P  K  *  V  F  I  N  K  P  I  M  L  C  E  F  L  I  *  L  I  F  H  K  E  *  S  N  W  *  K  G  V  A  L  I  Y  *  N  C  R  I  L  V  F  S  W  Y  F  *  S  F  F  C  S  G  C  V  F  I  F  L  W  V  L  S  I  F  I  N  G  C  W  C  *  R  S  V  W  *  D  N  S  G  *  S  S  C  C  S  V  F  I  I  T  K  H  *  *  H  Q  Q  *  F  *  I  *  W  C  *  G  F  I  R  F  N  R  K  C  E  I  G  V  S  Y  A  *  Y  C  *  Y  V  E  E  T  *  A  E  S  T  G  *  G  V  F  S  F  F  L  *  S  W  Y  C  W  C  W  *  S  D  D  S  Q  *  L  C  T  S  *  Q  D  Y  G  G  *  W  F  S  K  Q  Q  K   : E  R  Q  Q  L  *  P  G  E  K  E  D  E  Q  *  S  L  *  G  S  K  R  R  *  H  Q  A  N  S  I  C  F  *  D  R  *  Q   : C  H  *  G  A  T  C  C  F  V  *  C  L  W  T   : S  C  *  L  P  N  L  W  *  S  T  F  S  S  S  F  C  F  R  G  V  C  *  *  V :   L  C  K  S  S  T  L  P  L  W  D  N  F  R  F  L  S  I  E  G  P  T  F  K  N  C  Y  S  T  R  E  S  Y  I  P  S  K   : V  R  G  *  A  *  N  V  C  Q  D  C  L  L  Y  K  Y  *  *  E   : G  Y  S  G  *  C  Q  E  F  F  *  N  Q  M  W  R   : G  F  S  P  E  A  F  G  R  S  R  A  L  D  P  H  C  F  C  *  V  C  N   : G  *  E  C  N  F  G  F  R  L  L  R  *  G  I  G  I  P  A  H  Q  :  G  E  S  L  K  N  T  S  E  A  P  T  S  A  C  H  D  A  V  S  Q  C  V  C  S  W  T  W  R  K  S  S  K  T  K  T  P  L  G  R  L  E  V  T  M  G  K  I  E  T  K  I  L  F  Q  *  S  P  C  S  L  F  S  C  S  F  L  Y  C  L  Q  *  L  M  L  P  E  N  N  V  A  I  E  P  T  I  F  K  L  E  F  P  H  L  Y  Y  F  Y  L  D  R  S  F  L  Y  E  S  L  D  V  P  L  * </second_frame>
            <third_frame>   F  L  C  L  L  L  L  K  F  V  A  I  Y  I  T  K  T  L  L  L  F  C  F  L  S  L  L  F  S  L  I  T  I  F  L  N  E  Y  L  S  I  N  P  L  C  S  V  N  S  S  F  D  *  F  F  I  K  N  N  Q  I  G  E  K  G  L  L  *  F  I  E  I  V  E  F  *  C  F  L  G  I  S  E  A  F  S  V  L  G  V  F  L  F  F  C  G  F  *  V  F  S  S  M  A  A  G  A  K  E  V  S  G  E  T  T  V  V  E  A  P  A  V  Q  S  L  S  S  P  N  T  D  N  T  S  N  N  S  E  S  N  G  V  K  D  S  S  D  S  I  A  N  A  K  S  E  F  H  M  H  D  I  A  D  M  L  K  K  L  K  L  N  P  Q  A  K  E  F  F  P  S  S  Y  N  R  G  T  V  G  A  G  D  Q  M  I  L  S  N  F  V  P  A  N  K  T  T  G  G  D  G  F  Q  N  N  R  R  :  R  G  S  N  F  N  Q  G  K  R  R  M  N  N  R  A  Y  K  A  Q  R  E  D  S  I  R  R  T  V  Y  V  S  E  I  D  S  N  :  V  T  E  E  Q  L  A  A  L  F  S  A  Y  G  Q  :  V  V  D  C  R  I  C  G  D  P  H  S  R  L  R  F  A  F  V  E  F  A  D  E   : Y  S  A  R  A  A  L  C  L  C  G  T  I  L  G  F  S  Q  L  K  V  L  P  S  K  T  A  I  L  P  V  N  P  T  F  L  P  R  :  S  E  D  E  R  E  M  C  A  R  T  V  Y  C  T  N  I  D  K  K  :  V  T  Q  A  D  V  K  N  F  F  E  T  R  C  G  E  :  V  S  R  L  R  L  L  G  D  H  V  H  S  T  R  I  A  F  V  E  F  V  M  :  A  E  S  A  I  L  A  L  D  C  C  G  E  V  L  G  S  Q  R  I  R :   V  S  P  S  K  T  P  V  R  P  R  L  P  R  A  M  M  Q  *  A  N  V  C  A  H  G  P  G  E  R  V  Q  R  Q  K  P  P  S  E  D  L  R  S  P  W  E  K  S  K  Q  K  F  C  F  S  N  L  H  V  L  S  F  H  V  P  F  F  T  A  Y  S  N  L  C  Y  Q  K  T  T  *  P  S  S  Q  R  F  L  N  W  N  F  R  T  C  T  T  F  T  L  I  D  R  S  S  M  N  L  L  M  F  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48691" stop="49041"/>
                    <exon start="50791" stop="50901"/>
                    <exon start="50988" stop="51032"/>
                    <exon start="53049" stop="53121"/>
                    <exon start="53200" stop="53312"/>
                    <exon start="53498" stop="53557"/>
                    <exon start="53738" stop="53785"/>
                    <exon start="53856" stop="53924"/>
                    <exon start="54790" stop="54851"/>
                    <exon start="55742" stop="55799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSSMAAGAKEVSGETTVVEAPAVQSLSSPNTDNTSNNSESNGVKDSSDSIANAKSEFHMHDIADMLKKLKLNPQAKEFFPSSYNRGTVGAGDQMILSNFVPANKTTGGDGFQNNRRRGSNFNQGKRRMNNRAYKAQREDSIRRTVYVSEIDSNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFVEFADEYSARAALCLCGTILGFSQLKVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVTQADVKNFFETRCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALDCCGEVLGSQRIRVSPSKTPVRPRLPRAMMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49012" e_stop="49041"/>
            <exon e_start="50791" e_stop="50901"/>
            <exon e_start="50988" e_stop="51032"/>
            <exon e_start="53049" e_stop="53121"/>
            <exon e_start="53200" e_stop="53242"/>
            <exon e_start="56125" e_stop="56627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.967"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.306" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="49012" e_stop="49041" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49042" i_stop="50790" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50791" e_stop="50901" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50902" i_stop="50987" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50988" e_stop="51032" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="51033" i_stop="53048" i_length="2016"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53049" e_stop="53121" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.306" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53122" i_stop="53199" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53200" e_stop="53242" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53243" i_stop="56124" i_length="2882"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="56125" e_stop="56627" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49012" stop="49041"/>
              <exon start="50791" stop="50901"/>
              <exon start="50988" stop="51032"/>
              <exon start="53049" stop="53121"/>
              <exon start="53200" stop="53242"/>
              <exon start="56125" stop="56627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335020" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGGTGATGGTTTTCAAAACAACAGAAGG : AGAGGCAGCAACTTTAACCAGGGGAAAAGGAGGATGAACAATAGAGCTTATAAGGCTCAAAGAGAAGATAGCATCAGGCGAACAGTATATGTTTCTGAGATAGATAGCAAT : GTCACTGAGGAGCAACTTGCTGCTTTGTTTAGTGCTTATGGACAA : GTTGTTGACTGCCGAATTTGTGGTGATCCACATTCTCGTCTTCGTTTTGCTTTCGTGGAGTTTGCTGATGAGT : ACTCTGCAAGAGCAGCACTTTGCCTTTGTGGGACAATTTTAGG : TTTCTCTCTGGATGTGCTTTACATGTTTCTTGTTGCTCTCAGAGTGCATCATTTACGTACCCGGTCTTTAACTATACGAACTCAACCATGGTTGAGTGCGATATTGACGTGAGGTAAGTGTATGTAGAAGACGTGTATTATGCATTTATTGATTTGATATATAGAACTCGAGTGATGAAATGTGATTGCAATCTTCAATAACCCCACAAAGAAGTCTTGGTTATTAAATGGGTATGCAGTTTGGGTCCAAGCTCCTACCACAAACCTAAGTTTTAAGATTCGCCTATCACAATAAATATTTTTAGTAAGGACGATAAATATTTTGAGACGGAAAAACTTTTGCCCAAAGTCATTTTACTTTTTAGGTGATGAATGTAAATAAAATGTTTGGACTCCAAAAAGGAAAAATAGGAAAGAAGACAGTATTTTAGTGAATATGTATAATGTACCCTTAATAATTAATTTCATTTTGGTATAAAACCAAAATACTATTTGAACCATAC</gDNA_template>
            <first_frame> G  G  D  G  F  Q  N  N  R  R  :  R  G  S  N  F  N  Q  G  K  R  R  M  N  N  R  A  Y  K  A  Q  R  E  D  S  I  R  R  T  V  Y  V  S  E  I  D  S  N  :  V  T  E  E  Q  L  A  A  L  F  S  A  Y  G  Q  :  V  V  D  C  R  I  C  G  D  P  H  S  R  L  R  F  A  F  V  E  F  A  D  E   : Y  S  A  R  A  A  L  C  L  C  G  T  I  L  G :   F  S  L  D  V  L  Y  M  F  L  V  A  L  R  V  H  H  L  R  T  R  S  L  T  I  R  T  Q  P  W  L  S  A  I  L  T  *  G  K  C  M  *  K  T  C  I  M  H  L  L  I  *  Y  I  E  L  E  *  *  N  V  I  A  I  F  N  N  P  T  K  K  S  W  L  L  N  G  Y  A  V  W  V  Q  A  P  T  T  N  L  S  F  K  I  R  L  S  Q  *  I  F  L  V  R  T  I  N  I  L  R  R  K  N  F  C  P  K  S  F  Y  F  L  G  D  E  C  K  *  N  V  W  T  P  K  R  K  N  R  K  E  D  S  I  L  V  N  M  Y  N  V  P  L  I  I  N  F  I  L  V  *  N  Q  N  T  I  *  T  I  </first_frame>
            <second_frame>  G  V  M  V  F  K  T  T  E  G :   E  A  A  T  L  T  R  G  K  G  G  *  T  I  E  L  I  R  L  K  E  K  I  A  S  G  E  Q  Y  M  F  L  R  *  I  A  M :   S  L  R  S  N  L  L  L  C  L  V  L  M  D  K :   L  L  T  A  E  F  V  V  I  H  I  L  V  F  V  L  L  S  W  S  L  L  M  S  :  T  L  Q  E  Q  H  F  A  F  V  G  Q  F  *   : V  S  L  W  M  C  F  T  C  F  L  L  L  S  E  C  I  I  Y  V  P  G  L  *  L  Y  E  L  N  H  G  *  V  R  Y  *  R  E  V  S  V  C  R  R  R  V  L  C  I  Y  *  F  D  I  *  N  S  S  D  E  M  *  L  Q  S  S  I  T  P  Q  R  S  L  G  Y  *  M  G  M  Q  F  G  S  K  L  L  P  Q  T  *  V  L  R  F  A  Y  H  N  K  Y  F  *  *  G  R  *  I  F  *  D  G  K  T  F  A  Q  S  H  F  T  F  *  V  M  N  V  N  K  M  F  G  L  Q  K  G  K  I  G  K  K  T  V  F  *  *  I  C  I  M  Y  P  *  *  L  I  S  F  W  Y  K  T  K  I  L  F  E  P  Y </second_frame>
            <third_frame>   G  *  W  F  S  K  Q  Q  K   : E  R  Q  Q  L  *  P  G  E  K  E  D  E  Q  *  S  L  *  G  S  K  R  R  *  H  Q  A  N  S  I  C  F  *  D  R  *  Q   : C  H  *  G  A  T  C  C  F  V  *  C  L  W  T   : S  C  *  L  P  N  L  W  *  S  T  F  S  S  S  F  C  F  R  G  V  C  *  *  V :   L  C  K  S  S  T  L  P  L  W  D  N  F  R  :  F  L  S  G  C  A  L  H  V  S  C  C  S  Q  S  A  S  F  T  Y  P  V  F  N  Y  T  N  S  T  M  V  E  C  D  I  D  V  R  *  V  Y  V  E  D  V  Y  Y  A  F  I  D  L  I  Y  R  T  R  V  M  K  C  D  C  N  L  Q  *  P  H  K  E  V  L  V  I  K  W  V  C  S  L  G  P  S  S  Y  H  K  P  K  F  *  D  S  P  I  T  I  N  I  F  S  K  D  D  K  Y  F  E  T  E  K  L  L  P  K  V  I  L  L  F  R  *  *  M  *  I  K  C  L  D  S  K  K  E  K  *  E  R  R  Q  Y  F  S  E  Y  V  *  C  T  L  N  N  *  F  H  F  G  I  K  P  K  Y  Y  L  N  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49012" stop="49041"/>
                    <exon start="50791" stop="50901"/>
                    <exon start="50988" stop="51032"/>
                    <exon start="53049" stop="53121"/>
                    <exon start="53200" stop="53242"/>
                    <exon start="56125" stop="56236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGDGFQNNRRRGSNFNQGKRRMNNRAYKAQREDSIRRTVYVSEIDSNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFVEFADEYSARAALCLCGTILGFSLDVLYMFLVALRVHHLRTRSLTIRTQPWLSAILT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="71010" PGL_stop="70246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71010" e_stop="70246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="71010" e_stop="70246" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71010" stop="70246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATTCATAGCTCCACAAATCTTGGAATTCCAACGGAAATTGGTCGGATTCGATTAATACTCAGATGACAATCTCAGAGCTTTCTCAACAACTCAAAATTCCCTTAAATTCTTCCGAAAAATTCAGTCTCACTTCTCCTCCTTCAGCCTCAACAAAAATGGAGTCTTTACCAAAAATCCAACAACCCCATAAGCGTTATTGGCGTTTTAGCAAACAAGATTTCTTCCCCGAACCGTCTTTTCACAATTTTGGATCCTACAAAAATGCCCTTTCTCAAACCCCAAATCGTCTCAAGAATCGTCTTTTTTCACGTTCATCAGATACCAGTGAATTGATTGAGCTTAAGAAAGAATCGGAAAATGAAATGAAATTATGTTTGACTTGGTGGGATTTAATTTGGCTTGGATTTGGATCTGTTGTTGGTTCAGGGATTTTTAGCATTACGGGTCAAGAAACCCGAAATGATGCTGGACCTGCTATTGTTCTTTCGTATGCAATTTCTGGTTTATCTGCTTTGCTTTCTGTGTTTTGTTATACAGAATTTTCTGTTGATATTCCTGTTGCTGGTGGGTCTTTTTCGTTTTTGAGAATTGAATTGGGTGATTTTGTTGCATTTATAGCTGCTGCTAATATTCTATTAGAGGCTATGGTGGGTGCTGCTGGGTTAGGACGTTCATGGTCGTCTTATTTTGCTAGTATTATTAATAATAACCCGGATTTTTTGAGGATCAAGATTGATTCTTTTGTAGAAGGGTTTAATTTG</gDNA_template>
            <first_frame> E  N  S  *  L  H  K  S  W  N  S  N  G  N  W  S  D  S  I  N  T  Q  M  T  I  S  E  L  S  Q  Q  L  K  I  P  L  N  S  S  E  K  F  S  L  T  S  P  P  S  A  S  T  K  M  E  S  L  P  K  I  Q  Q  P  H  K  R  Y  W  R  F  S  K  Q  D  F  F  P  E  P  S  F  H  N  F  G  S  Y  K  N  A  L  S  Q  T  P  N  R  L  K  N  R  L  F  S  R  S  S  D  T  S  E  L  I  E  L  K  K  E  S  E  N  E  M  K  L  C  L  T  W  W  D  L  I  W  L  G  F  G  S  V  V  G  S  G  I  F  S  I  T  G  Q  E  T  R  N  D  A  G  P  A  I  V  L  S  Y  A  I  S  G  L  S  A  L  L  S  V  F  C  Y  T  E  F  S  V  D  I  P  V  A  G  G  S  F  S  F  L  R  I  E  L  G  D  F  V  A  F  I  A  A  A  N  I  L  L  E  A  M  V  G  A  A  G  L  G  R  S  W  S  S  Y  F  A  S  I  I  N  N  N  P  D  F  L  R  I  K  I  D  S  F  V  E  G  F  N  L </first_frame>
            <second_frame>  K  I  H  S  S  T  N  L  G  I  P  T  E  I  G  R  I  R  L  I  L  R  *  Q  S  Q  S  F  L  N  N  S  K  F  P  *  I  L  P  K  N  S  V  S  L  L  L  L  Q  P  Q  Q  K  W  S  L  Y  Q  K  S  N  N  P  I  S  V  I  G  V  L  A  N  K  I  S  S  P  N  R  L  F  T  I  L  D  P  T  K  M  P  F  L  K  P  Q  I  V  S  R  I  V  F  F  H  V  H  Q  I  P  V  N  *  L  S  L  R  K  N  R  K  M  K  *  N  Y  V  *  L  G  G  I  *  F  G  L  D  L  D  L  L  L  V  Q  G  F  L  A  L  R  V  K  K  P  E  M  M  L  D  L  L  L  F  F  R  M  Q  F  L  V  Y  L  L  C  F  L  C  F  V  I  Q  N  F  L  L  I  F  L  L  L  V  G  L  F  R  F  *  E  L  N  W  V  I  L  L  H  L  *  L  L  L  I  F  Y  *  R  L  W  W  V  L  L  G  *  D  V  H  G  R  L  I  L  L  V  L  L  I  I  T  R  I  F  *  G  S  R  L  I  L  L  *  K  G  L  I   </second_frame>
            <third_frame>   K  F  I  A  P  Q  I  L  E  F  Q  R  K  L  V  G  F  D  *  Y  S  D  D  N  L  R  A  F  S  T  T  Q  N  S  L  K  F  F  R  K  I  Q  S  H  F  S  S  F  S  L  N  K  N  G  V  F  T  K  N  P  T  T  P  *  A  L  L  A  F  *  Q  T  R  F  L  P  R  T  V  F  S  Q  F  W  I  L  Q  K  C  P  F  S  N  P  K  S  S  Q  E  S  S  F  F  T  F  I  R  Y  Q  *  I  D  *  A  *  E  R  I  G  K  *  N  E  I  M  F  D  L  V  G  F  N  L  A  W  I  W  I  C  C  W  F  R  D  F  *  H  Y  G  S  R  N  P  K  *  C  W  T  C  Y  C  S  F  V  C  N  F  W  F  I  C  F  A  F  C  V  L  L  Y  R  I  F  C  *  Y  S  C  C  W  W  V  F  F  V  F  E  N  *  I  G  *  F  C  C  I  Y  S  C  C  *  Y  S  I  R  G  Y  G  G  C  C  W  V  R  T  F  M  V  V  L  F  C  *  Y  Y  *  *  *  P  G  F  F  E  D  Q  D  *  F  F  C  R  R  V  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70998" stop="70246"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHKSWNSNGNWSDSINTQMTISELSQQLKIPLNSSEKFSLTSPPSASTKMESLPKIQQPHKRYWRFSKQDFFPEPSFHNFGSYKNALSQTPNRLKNRLFSRSSDTSELIELKKESENEMKLCLTWWDLIWLGFGSVVGSGIFSITGQETRNDAGPAIVLSYAISGLSALLSVFCYTEFSVDIPVAGGSFSFLRIELGDFVAFIAAANILLEAMVGAAGLGRSWSSYFASIINNNPDFLRIKIDSFVEGFNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="93781" PGL_stop="94334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93781" e_stop="94334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="93781" e_stop="94334" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93781" stop="94334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGTTAAGAGAGGGTGAGGAAGAGGAGAATGAACAAGTATAGAATGAGGGGTTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCTGAATCTGAGGATGCTTATGATATTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCGCCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  V  K  R  G  *  G  R  G  E  *  T  S  I  E  *  G  V  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  *  Y  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  A  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  L  R  E  G  E  E  E  E  N  E  Q  V  *  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  I  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  C  *  E  R  V  R  K  R  R  M  N  K  Y  R  M  R  G  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  K  V  L  N  L  R  M  L  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  R  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93872" stop="94333"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPEVQHAATVAPRMDASLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDILVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="96460" PGL_stop="95114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96460" e_stop="95114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="96460" e_stop="95114" e_length="1347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96460" stop="95748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95871" stop="95114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95468" stop="95138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAACTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAACTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTTATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAAAGCGAGGAATGGGATATTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATACTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAAGAAGGTCTGCAGGAAACACATCTAAAAATTCGCGGACTATCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGATGTGCCAAGAAAGCTAGACAACCCTTACTAACCATTTTCTTAACACGAAGAAAGGAGACAATACGAACCGGATTGGAAGTGTAGTCGCCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCAGACCCAGAATTACATCAAAATCAACCATGTCTAAGATAACCAAGTCTACATAAGTATTGTTCCCCACAAAATTCACCAAACAAGACCTATATATTCTTTCAACTATTACAGAGTCACCCACCGGAGTAGACACACGAATAGATATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGCAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATAACAGCATC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  T  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  T  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  Y  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  K  A  R  N  G  I  F  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  A  E  V  N  I  S  I  R  W  H  T  K  K  V  C  R  K  H  I  *  K  F  A  D  Y  R  N  R  L  N  *  R  Y  L  G  S  V  I  P  E  M  C  Q  E  S  *  T  T  L  T  N  H  F  L  N  T  K  K  G  D  N  T  N  R  I  G  S  V  V  A  L  P  H  *  Q  I  C  P  R  L  G  *  R  H  C  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  Q  T  Q  N  Y  I  K  I  N  H  V  *  D  N  Q  V  Y  I  S  I  V  P  H  K  I  H  Q  T  R  P  I  Y  S  F  N  Y  Y  R  V  T  H  R  S  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  N  S  I </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  L  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  K  Y  T  N  I  S  S  I  N  M  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  A  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  K  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  Y  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  V  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  R  R  S  A  G  N  T  S  K  N  S  R  T  I  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  R  Q  P  L  L  T  I  F  L  T  R  R  K  E  T  I  R  T  G  L  E  V  *  S  P  S  H  T  N  R  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  R  P  R  I  T  S  K  S  T  M  S  K  I  T  K  S  T  *  V  L  F  P  T  K  F  T  K  Q  D  L  Y  I  L  S  T  I  T  E  S  P  T  G  V  D  T  R  I  D  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  A  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  I  K  R  L  P  V  I  T  A   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  N  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  *  S  Q  R  D  P  D  M  A  *  K  S  R  L  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  I  D  R  T  S  H  Q  S  E  E  W  D  I  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  T  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  L  T  L  W  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  I  R  G  L  S  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  D  N  P  Y  *  P  F  S  *  H  E  E  R  R  Q  Y  E  P  D  W  K  C  S  R  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  L  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  D  P  E  L  H  Q  N  Q  P  C  L  R  *  P  S  L  H  K  Y  C  S  P  Q  N  S  P  N  K  T  Y  I  F  F  Q  L  L  Q  S  H  P  P  E  *  T  H  E  *  I  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  Q  I  H  M  K  M  W  S  Q  D  Q  I  I  Q  K  P  C  N  H  K  S  K  D  Y  L  *  *  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95733" stop="95488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPRRSAGNTSKNSRTIETDSIEGTWVVSSLRCAKKARQPLLTIFLTRRKETIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96196" stop="95957"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQIWLKNPVYQAHESSRGIRKTKRHHYKFVMPIPGPKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95337" stop="95116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFPTKFTKQDLYILSTITESPTGVDTRIDMSSNSQCKLRPLANEADTYENVEPGSNNTEAMQSQIKRLPVITA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96264" stop="96067"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFKYTNISSINMITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="106674" PGL_stop="107414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106674" e_stop="107414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="106674" e_stop="107414" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106674" stop="107414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGTTCAAGTGTTTGTACTTTTTTGTGTGTGTATCAAACAATACTATGGCAACTTTGGTACCTGAGGTTGAGAATAGGGCATGTATCAATGGGTGCAATAATGATTTGACCAATTTTGATCACTCTCAAATAGATTGCTCCCTTCTCATGTCATTGCTTGATGACTCGCAAGGCGTAGACGATATTGATCATGATAACGAGAGATTATCGAGTGTGATTAGATCTCTCGAGGCTGAAATTGATGATCATCACCTGATAAACGTTGATCACGATTCATTTCAGAATACTCATCAAAGGAGTACTACCAACGATGAAGATTGGCAGTCGTGAGAATCTGATCAAAGTCAAAATCAAAGTTAAAATTTATTCGAATCGAGCTGTCTTGATTTGAGTTGGATGGATATAGAGATGGATATTGCTCCTTCTAATACCATTAGTGATGACATGATGAACTTTTGGTACATGGACAATAGTTATGGACAAGATCATGATGTGTATGAATATGGTTATGGTACTTTTCCCTTAGAGGAAAATGATCACAATTCATCAGCTTTAACAACACAAGCCTAAGTCGAAACTTCAATATGGACTTCGGAAATTAAAAAAAAAACACAAGGCTAAAGTTTGTGCCAAAAAATTATAACTTCTATTGTAATTGATTAGCTAGAGGTAAATTGTACTTGAATTAGATGTATTAGTGAGGAGGAACTCAATAAAATAACAACACGTATCATGCTCCT</gDNA_template>
            <first_frame> V  V  Q  V  F  V  L  F  C  V  C  I  K  Q  Y  Y  G  N  F  G  T  *  G  *  E  *  G  M  Y  Q  W  V  Q  *  *  F  D  Q  F  *  S  L  S  N  R  L  L  P  S  H  V  I  A  *  *  L  A  R  R  R  R  Y  *  S  *  *  R  E  I  I  E  C  D  *  I  S  R  G  *  N  *  *  S  S  P  D  K  R  *  S  R  F  I  S  E  Y  S  S  K  E  Y  Y  Q  R  *  R  L  A  V  V  R  I  *  S  K  S  K  S  K  L  K  F  I  R  I  E  L  S  *  F  E  L  D  G  Y  R  D  G  Y  C  S  F  *  Y  H  *  *  *  H  D  E  L  L  V  H  G  Q  *  L  W  T  R  S  *  C  V  *  I  W  L  W  Y  F  S  L  R  G  K  *  S  Q  F  I  S  F  N  N  T  S  L  S  R  N  F  N  M  D  F  G  N  *  K  K  N  T  R  L  K  F  V  P  K  N  Y  N  F  Y  C  N  *  L  A  R  G  K  L  Y  L  N  *  M  Y  *  *  G  G  T  Q  *  N  N  N  T  Y  H  A  P </first_frame>
            <second_frame>  *  F  K  C  L  Y  F  F  V  C  V  S  N  N  T  M  A  T  L  V  P  E  V  E  N  R  A  C  I  N  G  C  N  N  D  L  T  N  F  D  H  S  Q  I  D  C  S  L  L  M  S  L  L  D  D  S  Q  G  V  D  D  I  D  H  D  N  E  R  L  S  S  V  I  R  S  L  E  A  E  I  D  D  H  H  L  I  N  V  D  H  D  S  F  Q  N  T  H  Q  R  S  T  T  N  D  E  D  W  Q  S  *  E  S  D  Q  S  Q  N  Q  S  *  N  L  F  E  S  S  C  L  D  L  S  W  M  D  I  E  M  D  I  A  P  S  N  T  I  S  D  D  M  M  N  F  W  Y  M  D  N  S  Y  G  Q  D  H  D  V  Y  E  Y  G  Y  G  T  F  P  L  E  E  N  D  H  N  S  S  A  L  T  T  Q  A  *  V  E  T  S  I  W  T  S  E  I  K  K  K  T  Q  G  *  S  L  C  Q  K  I  I  T  S  I  V  I  D  *  L  E  V  N  C  T  *  I  R  C  I  S  E  E  E  L  N  K  I  T  T  R  I  M  L   </second_frame>
            <third_frame>   S  S  S  V  C  T  F  L  C  V  Y  Q  T  I  L  W  Q  L  W  Y  L  R  L  R  I  G  H  V  S  M  G  A  I  M  I  *  P  I  L  I  T  L  K  *  I  A  P  F  S  C  H  C  L  M  T  R  K  A  *  T  I  L  I  M  I  T  R  D  Y  R  V  *  L  D  L  S  R  L  K  L  M  I  I  T  *  *  T  L  I  T  I  H  F  R  I  L  I  K  G  V  L  P  T  M  K  I  G  S  R  E  N  L  I  K  V  K  I  K  V  K  I  Y  S  N  R  A  V  L  I  *  V  G  W  I  *  R  W  I  L  L  L  L  I  P  L  V  M  T  *  *  T  F  G  T  W  T  I  V  M  D  K  I  M  M  C  M  N  M  V  M  V  L  F  P  *  R  K  M  I  T  I  H  Q  L  *  Q  H  K  P  K  S  K  L  Q  Y  G  L  R  K  L  K  K  K  H  K  A  K  V  C  A  K  K  L  *  L  L  L  *  L  I  S  *  R  *  I  V  L  E  L  D  V  L  V  R  R  N  S  I  K  *  Q  H  V  S  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106678" stop="107004"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKCLYFFVCVSNNTMATLVPEVENRACINGCNNDLTNFDHSQIDCSLLMSLLDDSQGVDDIDHDNERLSSVIRSLEAEIDDHHLINVDHDSFQNTHQRSTTNDEDWQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107035" stop="107244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFESSCLDLSWMDIEMDIAPSNTISDDMMNFWYMDNSYGQDHDVYEYGYGTFPLEENDHNSSALTTQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="113311" PGL_stop="109967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113311" e_stop="113298"/>
            <exon e_start="113041" e_stop="112993"/>
            <exon e_start="112637" e_stop="112542"/>
            <exon e_start="112470" e_stop="112281"/>
            <exon e_start="111435" e_stop="111312"/>
            <exon e_start="111084" e_stop="109967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.533" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113311" e_stop="113298" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.804">
            <gDNA_intron_boundary i_start="113297" i_stop="113042" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113041" e_stop="112993" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112992" i_stop="112638" i_length="355"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112637" e_stop="112542" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.533">
            <gDNA_intron_boundary i_start="112541" i_stop="112471" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112470" e_stop="112281" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.997">
            <gDNA_intron_boundary i_start="112280" i_stop="111436" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111435" e_stop="111312" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.911" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111311" i_stop="111085" i_length="227"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111084" e_stop="109967" e_length="1118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113311" stop="113298"/>
              <exon start="113041" stop="112993"/>
              <exon start="112637" stop="112542"/>
              <exon start="112470" stop="112281"/>
              <exon start="111435" stop="111312"/>
              <exon start="111084" stop="109967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACTTGTTGAG : CCCAATATGCTGGTAGTACACATGGAGAAATTTGTTTCACCCCAACAAG : AGGAAAGCTGGTTTTCTATCGATGCAAAGGAGCCCATTGCCCATGTTATTTTGGAAGTCCTTGAAGCGGAAGACTTAAAGCCAGCAGATTTAAATG : GACTCTCTGATCCATATGTTAAGGGGCATCTTGGGCCCTACAGATTCAAGACTAGGACTCAGAAGAAGACATTAGCTCCACAGTGGCAAGAGGAGTTCAAGATTCCAGTCTGTTCATGGGAGTCTCCTAACGATATGCTCAACATAGATGTTTGTGACAGAGACCATTTTTCTGCGGATGAAACATTGGG : AGATTATTCCATAAACATCTGTGATTATAGGGATGGCCAGAGGCATGATATATGGTTGTCTCTTCATAATGTTAAAATGGGGAGACTACGTCTTGCCATAACTGTAGTTGAAGGCAGCGAAAAG : TTTACAGAGCAGTCATCCGAGCAGGCAAAAACGGACATCAAACAGGAGAGCAATTCTGATGAGATGGATACAGCCGAAAGAGGGTCCTTACCCACCGAGATGGATAAGCAATCGTCAAAAATTGCAGATACATATGAACCAATTAACATAGAAGGGCAGAAGGAGACTGGCATGTGGGTACACCACCCTGGCAGTGAAGTACCACAAGTTTGGGAACAGAGAAAGGGAAAGAGTCGGGTTATCGATGGAGAAGTTCATGGTTCTGATGCTGATTCCATGGGAGGAAGTTTCAAGTTAAGAGGGGGAGGATCTACTCGGGGTGATGATTCTGATGAAGGCAGTGGATCTAAGAAGTCGAATCTAATTAACAGGGGTATAAATAAGATCGGGTCCTTCTTCCACAAAAGTCAGAAAAGCGAGGACAGGTCTATAAATCTTGGAGATCCTGTTCCATCTCCGCAAGCTAATCTAAAGGCAGTGAGTGCAAAGGGGATCGGTGTGAATCTTATTATGAACGATTCAGTGGAAACAACTCCCCGAGATGATAGTAAAGAGGCTCATGAGGGAAATGTTCAATGTAGTAGCTCCAACAAGAGTAGAGTCCGTGACAAGGCGAAGAATATCCTAAGACATGTATCTCGGAAGTCATCACGAAAATCTAAAGGTGAGTTAGAACCAACAGCATCAGAGAGAGATCTATCTGTGGAATCTGACTCCTCCGACGATTTTACTCCCTTAGTTGGTTCACCTCTAGGCCGTTCAGTGAGCGGTCGTTTCATAGCCAGCACTGGCACTGAGAATCCCAATGGCAACACATTGAAGAGTAGTGAATTGGTAAGTGATAAGGGAAACATGAAAACTAGTGAGGAATTAGTTCATGATAAAGCTATGAATTCAGTAAGTCCAAAAGTTTCTAATCTTTGAATATGTTTGTTGTACATTTTCTTTAATGCAGAGTTACTGTTATACCTTTTACTTGTACATGAATATATGTAATGTAATAGTTTCATATTGGCTTCTGTTTGTACATGTTAGTGAAACTTCTGACATGGTGCGACATTGTCTGCTTTGAGCAAAGCCCGTATGATTTGTATAAAAGTATGCAATACTTTTTCTGT</gDNA_template>
            <first_frame> R  H  L  L  S :   P  I  C  W  *  Y  T  W  R  N  L  F  H  P  N  K  :  R  K  A  G  F  L  S  M  Q  R  S  P  L  P  M  L  F  W  K  S  L  K  R  K  T  *  S  Q  Q  I  *  M  :  D  S  L  I  H  M  L  R  G  I  L  G  P  T  D  S  R  L  G  L  R  R  R  H  *  L  H  S  G  K  R  S  S  R  F  Q  S  V  H  G  S  L  L  T  I  C  S  T  *  M  F  V  T  E  T  I  F  L  R  M  K  H  W   : E  I  I  P  *  T  S  V  I  I  G  M  A  R  G  M  I  Y  G  C  L  F  I  M  L  K  W  G  D  Y  V  L  P  *  L  *  L  K  A  A  K  S :   L  Q  S  S  H  P  S  R  Q  K  R  T  S  N  R  R  A  I  L  M  R  W  I  Q  P  K  E  G  P  Y  P  P  R  W  I  S  N  R  Q  K  L  Q  I  H  M  N  Q  L  T  *  K  G  R  R  R  L  A  C  G  Y  T  T  L  A  V  K  Y  H  K  F  G  N  R  E  R  E  R  V  G  L  S  M  E  K  F  M  V  L  M  L  I  P  W  E  E  V  S  S  *  E  G  E  D  L  L  G  V  M  I  L  M  K  A  V  D  L  R  S  R  I  *  L  T  G  V  *  I  R  S  G  P  S  S  T  K  V  R  K  A  R  T  G  L  *  I  L  E  I  L  F  H  L  R  K  L  I  *  R  Q  *  V  Q  R  G  S  V  *  I  L  L  *  T  I  Q  W  K  Q  L  P  E  M  I  V  K  R  L  M  R  E  M  F  N  V  V  A  P  T  R  V  E  S  V  T  R  R  R  I  S  *  D  M  Y  L  G  S  H  H  E  N  L  K  V  S  *  N  Q  Q  H  Q  R  E  I  Y  L  W  N  L  T  P  P  T  I  L  L  P  *  L  V  H  L  *  A  V  Q  *  A  V  V  S  *  P  A  L  A  L  R  I  P  M  A  T  H  *  R  V  V  N  W  *  V  I  R  E  T  *  K  L  V  R  N  *  F  M  I  K  L  *  I  Q  *  V  Q  K  F  L  I  F  E  Y  V  C  C  T  F  S  L  M  Q  S  Y  C  Y  T  F  Y  L  Y  M  N  I  C  N  V  I  V  S  Y  W  L  L  F  V  H  V  S  E  T  S  D  M  V  R  H  C  L  L  *  A  K  P  V  *  F  V  *  K  Y  A  I  L  F  L  </first_frame>
            <second_frame>  D  T  C  *   : A  Q  Y  A  G  S  T  H  G  E  I  C  F  T  P  T  R :   G  K  L  V  F  Y  R  C  K  G  A  H  C  P  C  Y  F  G  S  P  *  S  G  R  L  K  A  S  R  F  K  W :   T  L  *  S  I  C  *  G  A  S  W  A  L  Q  I  Q  D  *  D  S  E  E  D  I  S  S  T  V  A  R  G  V  Q  D  S  S  L  F  M  G  V  S  *  R  Y  A  Q  H  R  C  L  *  Q  R  P  F  F  C  G  *  N  I  G  :  R  L  F  H  K  H  L  *  L  *  G  W  P  E  A  *  Y  M  V  V  S  S  *  C  *  N  G  E  T  T  S  C  H  N  C  S  *  R  Q  R  K   : V  Y  R  A  V  I  R  A  G  K  N  G  H  Q  T  G  E  Q  F  *  *  D  G  Y  S  R  K  R  V  L  T  H  R  D  G  *  A  I  V  K  N  C  R  Y  I  *  T  N  *  H  R  R  A  E  G  D  W  H  V  G  T  P  P  W  Q  *  S  T  T  S  L  G  T  E  K  G  K  E  S  G  Y  R  W  R  S  S  W  F  *  C  *  F  H  G  R  K  F  Q  V  K  R  G  R  I  Y  S  G  *  *  F  *  *  R  Q  W  I  *  E  V  E  S  N  *  Q  G  Y  K  *  D  R  V  L  L  P  Q  K  S  E  K  R  G  Q  V  Y  K  S  W  R  S  C  S  I  S  A  S  *  S  K  G  S  E  C  K  G  D  R  C  E  S  Y  Y  E  R  F  S  G  N  N  S  P  R  *  *  *  R  G  S  *  G  K  C  S  M  *  *  L  Q  Q  E  *  S  P  *  Q  G  E  E  Y  P  K  T  C  I  S  E  V  I  T  K  I  *  R  *  V  R  T  N  S  I  R  E  R  S  I  C  G  I  *  L  L  R  R  F  Y  S  L  S  W  F  T  S  R  P  F  S  E  R  S  F  H  S  Q  H  W  H  *  E  S  Q  W  Q  H  I  E  E  *  *  I  G  K  *  *  G  K  H  E  N  *  *  G  I  S  S  *  *  S  Y  E  F  S  K  S  K  S  F  *  S  L  N  M  F  V  V  H  F  L  *  C  R  V  T  V  I  P  F  T  C  T  *  I  Y  V  M  *  *  F  H  I  G  F  C  L  Y  M  L  V  K  L  L  T  W  C  D  I  V  C  F  E  Q  S  P  Y  D  L  Y  K  S  M  Q  Y  F  F  C </second_frame>
            <third_frame>   T  L  V  E  :  P  N  M  L  V  V  H  M  E  K  F  V  S  P  Q  Q   : E  E  S  W  F  S  I  D  A  K  E  P  I  A  H  V  I  L  E  V  L  E  A  E  D  L  K  P  A  D  L  N   : G  L  S  D  P  Y  V  K  G  H  L  G  P  Y  R  F  K  T  R  T  Q  K  K  T  L  A  P  Q  W  Q  E  E  F  K  I  P  V  C  S  W  E  S  P  N  D  M  L  N  I  D  V  C  D  R  D  H  F  S  A  D  E  T  L  G :   D  Y  S  I  N  I  C  D  Y  R  D  G  Q  R  H  D  I  W  L  S  L  H  N  V  K  M  G  R  L  R  L  A  I  T  V  V  E  G  S  E  K  :  F  T  E  Q  S  S  E  Q  A  K  T  D  I  K  Q  E  S  N  S  D  E  M  D  T  A  E  R  G  S  L  P  T  E  M  D  K  Q  S  S  K  I  A  D  T  Y  E  P  I  N  I  E  G  Q  K  E  T  G  M  W  V  H  H  P  G  S  E  V  P  Q  V  W  E  Q  R  K  G  K  S  R  V  I  D  G  E  V  H  G  S  D  A  D  S  M  G  G  S  F  K  L  R  G  G  G  S  T  R  G  D  D  S  D  E  G  S  G  S  K  K  S  N  L  I  N  R  G  I  N  K  I  G  S  F  F  H  K  S  Q  K  S  E  D  R  S  I  N  L  G  D  P  V  P  S  P  Q  A  N  L  K  A  V  S  A  K  G  I  G  V  N  L  I  M  N  D  S  V  E  T  T  P  R  D  D  S  K  E  A  H  E  G  N  V  Q  C  S  S  S  N  K  S  R  V  R  D  K  A  K  N  I  L  R  H  V  S  R  K  S  S  R  K  S  K  G  E  L  E  P  T  A  S  E  R  D  L  S  V  E  S  D  S  S  D  D  F  T  P  L  V  G  S  P  L  G  R  S  V  S  G  R  F  I  A  S  T  G  T  E  N  P  N  G  N  T  L  K  S  S  E  L  V  S  D  K  G  N  M  K  T  S  E  E  L  V  H  D  K  A  M  N  S  V  S  P  K  V  S  N  L  *  I  C  L  L  Y  I  F  F  N  A  E  L  L  L  Y  L  L  L  V  H  E  Y  M  *  C  N  S  F  I  L  A  S  V  C  T  C  *  *  N  F  *  H  G  A  T  L  S  A  L  S  K  A  R  M  I  C  I  K  V  C  N  T  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113309" stop="113298"/>
                    <exon start="113041" stop="112993"/>
                    <exon start="112637" stop="112542"/>
                    <exon start="112470" stop="112281"/>
                    <exon start="111435" stop="111312"/>
                    <exon start="111084" stop="110161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLVEPNMLVVHMEKFVSPQQEESWFSIDAKEPIAHVILEVLEAEDLKPADLNGLSDPYVKGHLGPYRFKTRTQKKTLAPQWQEEFKIPVCSWESPNDMLNIDVCDRDHFSADETLGDYSINICDYRDGQRHDIWLSLHNVKMGRLRLAITVVEGSEKFTEQSSEQAKTDIKQESNSDEMDTAERGSLPTEMDKQSSKIADTYEPINIEGQKETGMWVHHPGSEVPQVWEQRKGKSRVIDGEVHGSDADSMGGSFKLRGGGSTRGDDSDEGSGSKKSNLINRGINKIGSFFHKSQKSEDRSINLGDPVPSPQANLKAVSAKGIGVNLIMNDSVETTPRDDSKEAHEGNVQCSSSNKSRVRDKAKNILRHVSRKSSRKSKGELEPTASERDLSVESDSSDDFTPLVGSPLGRSVSGRFIASTGTENPNGNTLKSSELVSDKGNMKTSEELVHDKAMNSVSPKVSNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="116455" PGL_stop="114579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116455" e_stop="116206"/>
            <exon e_start="116109" e_stop="116035"/>
            <exon e_start="115152" e_stop="115009"/>
            <exon e_start="114769" e_stop="114674"/>
            <exon e_start="114584" e_stop="114579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.075" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116455" e_stop="116206" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116205" i_stop="116110" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116109" e_stop="116035" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116034" i_stop="115153" i_length="882"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115152" e_stop="115009" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.075" acc_prob="0.953">
            <gDNA_intron_boundary i_start="115008" i_stop="114770" i_length="239"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114769" e_stop="114674" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114673" i_stop="114585" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114584" e_stop="114579" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116455" stop="116206"/>
              <exon start="116109" stop="116035"/>
              <exon start="115152" stop="115009"/>
              <exon start="114769" stop="114674"/>
              <exon start="114584" stop="114579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATCAAAAAAGAGTTTTTTGGTCAAGATTTGGTGATGGGTGTGTTTATTTTTGATGAAAGACTGTAAATTTGGAATAAAGAGGGAGTTTTTTTTTTCTGGGGTGGGGAGATTTTAAGAAATGGCAAGTATAACAGAGGTTACAATTCTACATCATGTGTGCATTGTGTTGATAGTAATATGGTTGCTTAATTCCTTCAATTATGGTCACCCTTTGGTTTATTTCATCTCCCTAATCTATCTTTATCTG : GTTAATGAGCAGTATGTGACTAGATTAAAGAAGAAATTGCAGTTTGAGGAAAAAAGACAGTCGAATCAACGACGA : GTGCTTTCTGATTCTGAAACAGTGAGGTGGTTAAACCATGCTCTTGAAAAGATTTGGCCTGTATGCATGGAGAATATCGTTTCACAGAAAATTCTCCTCCCTATCATTCCGTGGTTTATGCAGAAATACAAACCCTGGACTGTG : AAAGACATTGCAGTGCAGTCTCTCTACTTAGGAAGAAGCCCACCTATGTTCACGGAAATGAGGGTTCTTCGTGAATCTACTGGAGATGATCACCTT : GTATTG</gDNA_template>
            <first_frame> G  I  K  K  E  F  F  G  Q  D  L  V  M  G  V  F  I  F  D  E  R  L  *  I  W  N  K  E  G  V  F  F  F  W  G  G  E  I  L  R  N  G  K  Y  N  R  G  Y  N  S  T  S  C  V  H  C  V  D  S  N  M  V  A  *  F  L  Q  L  W  S  P  F  G  L  F  H  L  P  N  L  S  L  S   : G  *  *  A  V  C  D  *  I  K  E  E  I  A  V  *  G  K  K  T  V  E  S  T  T   : S  A  F  *  F  *  N  S  E  V  V  K  P  C  S  *  K  D  L  A  C  M  H  G  E  Y  R  F  T  E  N  S  P  P  Y  H  S  V  V  Y  A  E  I  Q  T  L  D  C   : E  R  H  C  S  A  V  S  L  L  R  K  K  P  T  Y  V  H  G  N  E  G  S  S  *  I  Y  W  R  *  S  P   : C  I  </first_frame>
            <second_frame>  E  S  K  K  S  F  L  V  K  I  W  *  W  V  C  L  F  L  M  K  D  C  K  F  G  I  K  R  E  F  F  F  S  G  V  G  R  F  *  E  M  A  S  I  T  E  V  T  I  L  H  H  V  C  I  V  L  I  V  I  W  L  L  N  S  F  N  Y  G  H  P  L  V  Y  F  I  S  L  I  Y  L  Y  L  :  V  N  E  Q  Y  V  T  R  L  K  K  K  L  Q  F  E  E  K  R  Q  S  N  Q  R  R  :  V  L  S  D  S  E  T  V  R  W  L  N  H  A  L  E  K  I  W  P  V  C  M  E  N  I  V  S  Q  K  I  L  L  P  I  I  P  W  F  M  Q  K  Y  K  P  W  T  V  :  K  D  I  A  V  Q  S  L  Y  L  G  R  S  P  P  M  F  T  E  M  R  V  L  R  E  S  T  G  D  D  H  L  :  V  L </second_frame>
            <third_frame>   N  Q  K  R  V  F  W  S  R  F  G  D  G  C  V  Y  F  *  *  K  T  V  N  L  E  *  R  G  S  F  F  F  L  G  W  G  D  F  K  K  W  Q  V  *  Q  R  L  Q  F  Y  I  M  C  A  L  C  *  *  *  Y  G  C  L  I  P  S  I  M  V  T  L  W  F  I  S  S  P  *  S  I  F  I  W :   L  M  S  S  M  *  L  D  *  R  R  N  C  S  L  R  K  K  D  S  R  I  N  D  E :   C  F  L  I  L  K  Q  *  G  G  *  T  M  L  L  K  R  F  G  L  Y  A  W  R  I  S  F  H  R  K  F  S  S  L  S  F  R  G  L  C  R  N  T  N  P  G  L  * :   K  T  L  Q  C  S  L  S  T  *  E  E  A  H  L  C  S  R  K  *  G  F  F  V  N  L  L  E  M  I  T  L :   Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116337" stop="116206"/>
                    <exon start="116109" stop="116035"/>
                    <exon start="115152" stop="115009"/>
                    <exon start="114769" stop="114674"/>
                    <exon start="114584" stop="114579"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMASITEVTILHHVCIVLIVIWLLNSFNYGHPLVYFISLIYLYLVNEQYVTRLKKKLQFEEKRQSNQRRVLSDSETVRWLNHALEKIWPVCMENIVSQKILLPIIPWFMQKYKPWTVKDIAVQSLYLGRSPPMFTEMRVLRESTGDDHLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="121323" PGL_stop="122866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121323" e_stop="121431"/>
            <exon e_start="121537" e_stop="121671"/>
            <exon e_start="121820" e_stop="121861"/>
            <exon e_start="121966" e_stop="122025"/>
            <exon e_start="122109" e_stop="122162"/>
            <exon e_start="122500" e_stop="122524"/>
            <exon e_start="122622" e_stop="122866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.138" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.328" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121323" e_stop="121431" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.138" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121432" i_stop="121536" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121537" e_stop="121671" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.328" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121672" i_stop="121819" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121820" e_stop="121861" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121862" i_stop="121965" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121966" e_stop="122025" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="122026" i_stop="122108" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122109" e_stop="122162" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.917" acc_prob="0.937">
            <gDNA_intron_boundary i_start="122163" i_stop="122499" i_length="337"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122500" e_stop="122524" e_length="25"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="122525" i_stop="122621" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="122622" e_stop="122866" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121323" stop="121431"/>
              <exon start="121537" stop="121671"/>
              <exon start="121820" stop="121861"/>
              <exon start="121966" stop="122025"/>
              <exon start="122109" stop="122162"/>
              <exon start="122500" stop="122524"/>
              <exon start="122622" stop="122866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAATCTTGTTAGGGTAGATTCGCTTAGACCATCATAATCATCCCTCGGTTGTACAGACGTGGGATCACTGGAGTACAAGAAGAATAGCTATCGACTCTCTTACTTG : GTTCGTGCAACTCCCGGTCATACGTTAGGCTGTATTACCTATGTTACTGGAGATGGAGTCGATCAGCCTCAGCCAAGGATGGCATTTACTGGTGATGCTCTATTGATAAGGGGATGTGGAAGGACGGACTTTCAG : GGTGGAAGTTCAGACAAATTATATGATTCTGTCCATTCGCAG : ATTTTCACATTGCCGAAAGACACATTAGTATATCCTGCTCATGACTACAAGGGATTCACC : GTCAGCACAGTGGGGGAGGAGATGCTTTACAATCCACGACTGTCAAAAGATAAG : GAAACATTCAAGAATATCATGCAAA : ATTTGAACTTGTCATATCCAAAAATGATCGATATCGCGGTTCCATCTAACATGGTTTGTGGATTGCAAGAGACGAAATCTGATCTTTGATCTCTGGTTTGATCATTTCATTGTGCCAGAAATTGTAAATTGAGAGCAATCTATACACATTTAGAAGTGCAAATTGACTATGTATGTTTGGATGGAAATGTTAAATAATGGTTTATTCAATTCAGTTAGTAAGAACTTTGTTAAATTGTTGTGATA</gDNA_template>
            <first_frame> I  K  S  C  *  G  R  F  A  *  T  I  I  I  I  P  R  L  Y  R  R  G  I  T  G  V  Q  E  E  *  L  S  T  L  L  L   : G  S  C  N  S  R  S  Y  V  R  L  Y  Y  L  C  Y  W  R  W  S  R  S  A  S  A  K  D  G  I  Y  W  *  C  S  I  D  K  G  M  W  K  D  G  L  S   : G  W  K  F  R  Q  I  I  *  F  C  P  F  A   : D  F  H  I  A  E  R  H  I  S  I  S  C  S  *  L  Q  G  I  H   : R  Q  H  S  G  G  G  D  A  L  Q  S  T  T  V  K  R  *   : G  N  I  Q  E  Y  H  A  K :   F  E  L  V  I  S  K  N  D  R  Y  R  G  S  I  *  H  G  L  W  I  A  R  D  E  I  *  S  L  I  S  G  L  I  I  S  L  C  Q  K  L  *  I  E  S  N  L  Y  T  F  R  S  A  N  *  L  C  M  F  G  W  K  C  *  I  M  V  Y  S  I  Q  L  V  R  T  L  L  N  C  C  D  </first_frame>
            <second_frame>  S  N  L  V  R  V  D  S  L  R  P  S  *  S  S  L  G  C  T  D  V  G  S  L  E  Y  K  K  N  S  Y  R  L  S  Y  L  :  V  R  A  T  P  G  H  T  L  G  C  I  T  Y  V  T  G  D  G  V  D  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  V  Y  P  A  H  D  Y  K  G  F  T  :  V  S  T  V  G  E  E  M  L  Y  N  P  R  L  S  K  D  K  :  E  T  F  K  N  I  M  Q   : N  L  N  L  S  Y  P  K  M  I  D  I  A  V  P  S  N  M  V  C  G  L  Q  E  T  K  S  D  L  *  S  L  V  *  S  F  H  C  A  R  N  C  K  L  R  A  I  Y  T  H  L  E  V  Q  I  D  Y  V  C  L  D  G  N  V  K  *  W  F  I  Q  F  S  *  *  E  L  C  *  I  V  V  I </second_frame>
            <third_frame>   Q  I  L  L  G  *  I  R  L  D  H  H  N  H  P  S  V  V  Q  T  W  D  H  W  S  T  R  R  I  A  I  D  S  L  T  W :   F  V  Q  L  P  V  I  R  *  A  V  L  P  M  L  L  E  M  E  S  I  S  L  S  Q  G  W  H  L  L  V  M  L  Y  *  *  G  D  V  E  G  R  T  F  R :   V  E  V  Q  T  N  Y  M  I  L  S  I  R  R :   F  S  H  C  R  K  T  H  *  Y  I  L  L  M  T  T  R  D  S  P :   S  A  Q  W  G  R  R  C  F  T  I  H  D  C  Q  K  I  R :   K  H  S  R  I  S  C  K  :  I  *  T  C  H  I  Q  K  *  S  I  S  R  F  H  L  T  W  F  V  D  C  K  R  R  N  L  I  F  D  L  W  F  D  H  F  I  V  P  E  I  V  N  *  E  Q  S  I  H  I  *  K  C  K  L  T  M  Y  V  W  M  E  M  L  N  N  G  L  F  N  S  V  S  K  N  F  V  K  L  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121363" stop="121431"/>
                    <exon start="121537" stop="121671"/>
                    <exon start="121820" stop="121861"/>
                    <exon start="121966" stop="122025"/>
                    <exon start="122109" stop="122162"/>
                    <exon start="122500" stop="122524"/>
                    <exon start="122622" stop="122710"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLGCTDVGSLEYKKNSYRLSYLVRATPGHTLGCITYVTGDGVDQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLVYPAHDYKGFTVSTVGEEMLYNPRLSKDKETFKNIMQNLNLSYPKMIDIAVPSNMVCGLQETKSDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="123763" PGL_stop="126915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123763" e_stop="124064"/>
            <exon e_start="124947" e_stop="125028"/>
            <exon e_start="126197" e_stop="126311"/>
            <exon e_start="126493" e_stop="126915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123763" e_stop="124064" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="124065" i_stop="124946" i_length="882"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124947" e_stop="125028" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.970">
            <gDNA_intron_boundary i_start="125029" i_stop="126196" i_length="1168"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126197" e_stop="126311" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="126312" i_stop="126492" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="126493" e_stop="126915" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123763" stop="124064"/>
              <exon start="124947" stop="125028"/>
              <exon start="126197" stop="126311"/>
              <exon start="126493" stop="126915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCCAACTCAAAACTTAGAAAAATTCAACAATTAAATTTTTTCAAATTCAATGAGTGAAGAAGGTAAAGAGAGTCATCATCACCACCACTTCCTACACCATCACCACCACGGAGAACACCATCACCACCACGGAGAACACCAACCGGAGGCGGTGGCGGTACCGGTGCCGCCACCGGAGTATGGAACTTTTCAAGCATCTTCTCAACCGGTGATGGGATTTCCTCAGCCAGTTCCGCCTCCTGGCGCTATGGGAGCACCTACGCCTGAATACTATGCTCATGGTTATCAGGCTGTTCCAG : GTTATACTGCTCCTGATCCTGAAGGAAGACCCGAGAGACATCATCGCCTTCCTTGCTGTGGCATTGGTCTCGGATGGTTCTT : GTTCATTATTGGTTTCCTTCTTGCTGGCATCCCTTGGTACCTAGCTGCATTTGTCCTTCTTTGTGCACAAATTGATCCTCGAGAGAAACCAGGATACATCGTGTCCACCATTGCT : GCTGTTCTTGCTACTTTTGTCCTCGTATTTGGTTTGTCGAAGGATTGACTGGAGAGTGGTGATCAATCTGTGTGTATTCATATCGGAACCTTATCTGGCTTTGCTTAATTTGCATTCTTTTCAGTAAAAATTCCATATCTTTGATTCCTTCTTGTATTCTTAAGATCTGCTTGTGAATAGTAATATGTGCTTTTAAGAGTATATGCGTAAGTATTACATTGCTGTGTTCTGTGGTGAGCGGAGTTATATGCTCGTGGAAGTAGCATGTATCCGATATAATAGTCGATGTAACTGCAAGTTGATCACTATTTTGACTATATAAAATGTGTTTGTTTTGTACAAATAATCACTTTTATGGCCCTTCGAATTTCAAACTCGAGGGGTATATTCTAAAGATTTTCTTGTGAGTTATAAATTTAAAAC</gDNA_template>
            <first_frame> I  P  N  S  K  L  R  K  I  Q  Q  L  N  F  F  K  F  N  E  *  R  R  *  R  E  S  S  S  P  P  L  P  T  P  S  P  P  R  R  T  P  S  P  P  R  R  T  P  T  G  G  G  G  G  T  G  A  A  T  G  V  W  N  F  S  S  I  F  S  T  G  D  G  I  S  S  A  S  S  A  S  W  R  Y  G  S  T  Y  A  *  I  L  C  S  W  L  S  G  C  S  R :   L  Y  C  S  *  S  *  R  K  T  R  E  T  S  S  P  S  L  L  W  H  W  S  R  M  V  L  :  V  H  Y  W  F  P  S  C  W  H  P  L  V  P  S  C  I  C  P  S  L  C  T  N  *  S  S  R  E  T  R  I  H  R  V  H  H  C   : C  C  S  C  Y  F  C  P  R  I  W  F  V  E  G  L  T  G  E  W  *  S  I  C  V  Y  S  Y  R  N  L  I  W  L  C  L  I  C  I  L  F  S  K  N  S  I  S  L  I  P  S  C  I  L  K  I  C  L  *  I  V  I  C  A  F  K  S  I  C  V  S  I  T  L  L  C  S  V  V  S  G  V  I  C  S  W  K  *  H  V  S  D  I  I  V  D  V  T  A  S  *  S  L  F  *  L  Y  K  M  C  L  F  C  T  N  N  H  F  Y  G  P  S  N  F  K  L  E  G  Y  I  L  K  I  F  L  *  V  I  N  L  K  </first_frame>
            <second_frame>  F  P  T  Q  N  L  E  K  F  N  N  *  I  F  S  N  S  M  S  E  E  G  K  E  S  H  H  H  H  H  F  L  H  H  H  H  H  G  E  H  H  H  H  H  G  E  H  Q  P  E  A  V  A  V  P  V  P  P  P  E  Y  G  T  F  Q  A  S  S  Q  P  V  M  G  F  P  Q  P  V  P  P  P  G  A  M  G  A  P  T  P  E  Y  Y  A  H  G  Y  Q  A  V  P   : G  Y  T  A  P  D  P  E  G  R  P  E  R  H  H  R  L  P  C  C  G  I  G  L  G  W  F  L :   F  I  I  G  F  L  L  A  G  I  P  W  Y  L  A  A  F  V  L  L  C  A  Q  I  D  P  R  E  K  P  G  Y  I  V  S  T  I  A  :  A  V  L  A  T  F  V  L  V  F  G  L  S  K  D  *  L  E  S  G  D  Q  S  V  C  I  H  I  G  T  L  S  G  F  A  *  F  A  F  F  S  V  K  I  P  Y  L  *  F  L  L  V  F  L  R  S  A  C  E  *  *  Y  V  L  L  R  V  Y  A  *  V  L  H  C  C  V  L  W  *  A  E  L  Y  A  R  G  S  S  M  Y  P  I  *  *  S  M  *  L  Q  V  D  H  Y  F  D  Y  I  K  C  V  C  F  V  Q  I  I  T  F  M  A  L  R  I  S  N  S  R  G  I  F  *  R  F  S  C  E  L  *  I  *  N </second_frame>
            <third_frame>   S  Q  L  K  T  *  K  N  S  T  I  K  F  F  Q  I  Q  *  V  K  K  V  K  R  V  I  I  T  T  T  S  Y  T  I  T  T  T  E  N  T  I  T  T  T  E  N  T  N  R  R  R  W  R  Y  R  C  R  H  R  S  M  E  L  F  K  H  L  L  N  R  *  W  D  F  L  S  Q  F  R  L  L  A  L  W  E  H  L  R  L  N  T  M  L  M  V  I  R  L  F  Q  :  V  I  L  L  L  I  L  K  E  D  P  R  D  I  I  A  F  L  A  V  A  L  V  S  D  G  S   : C  S  L  L  V  S  F  L  L  A  S  L  G  T  *  L  H  L  S  F  F  V  H  K  L  I  L  E  R  N  Q  D  T  S  C  P  P  L  L :   L  F  L  L  L  L  S  S  Y  L  V  C  R  R  I  D  W  R  V  V  I  N  L  C  V  F  I  S  E  P  Y  L  A  L  L  N  L  H  S  F  Q  *  K  F  H  I  F  D  S  F  L  Y  S  *  D  L  L  V  N  S  N  M  C  F  *  E  Y  M  R  K  Y  Y  I  A  V  F  C  G  E  R  S  Y  M  L  V  E  V  A  C  I  R  Y  N  S  R  C  N  C  K  L  I  T  I  L  T  I  *  N  V  F  V  L  Y  K  *  S  L  L  W  P  F  E  F  Q  T  R  G  V  Y  S  K  D  F  L  V  S  Y  K  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123800" stop="124064"/>
                    <exon start="124947" stop="125028"/>
                    <exon start="126197" stop="126311"/>
                    <exon start="126493" stop="126540"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSNSMSEEGKESHHHHHFLHHHHHGEHHHHHGEHQPEAVAVPVPPPEYGTFQASSQPVMGFPQPVPPPGAMGAPTPEYYAHGYQAVPGYTAPDPEGRPERHHRLPCCGIGLGWFLFIIGFLLAGIPWYLAAFVLLCAQIDPREKPGYIVSTIAAVLATFVLVFGLSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="127594" PGL_stop="128820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127594" e_stop="127751"/>
            <exon e_start="127953" e_stop="128662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="0.987"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="127594" e_stop="127751" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="127953" e_stop="128662" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127594" stop="127751"/>
              <exon start="127953" stop="128662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCACAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGACTACTTGGGAAACCCTAACCTTGTCCATGCTCAGAGTATTCTAGCTGTGCTAGGTTTCCAAGTGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCAACGGACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATT</gDNA_template>
            <first_frame> S  T  K  Y  I  L  R  S  *  R  K  W  H  Q  W  Q  Q  Q  L  A  P  P  Q  L  L  K  Q  H  H  F  W  A  K  P  K  M  L  T  L  L  E  M  L  L  P  W  A  L  P  D  S  P  * :   V  M  I  C  G  T  D  L  T  V  L  S  T  W  D  P  F  L  L  K  L  L  L  T  *  T  E  S  S  L  V  T  T  D  G  T  L  L  V  Y  P  L  I  P  R  P  L  P  R  T  E  L  L  R  Y  S  Y  L  F  T  H  T  Y  Q  K  E  N  *  D  L  H  T  S  Y  L  P  Q  T  P  L  I  L  L  S  D  I  E  L  Y  R  L  S  M  E  D  G  Q  C  L  V  H  *  V  A  F  S  P  K  F  L  K  N  G  *  R  *  T  S  K  N  Q  Y  G  S  K  Q  D  H  K  S  S  V  T  V  D  L  T  T  W  E  T  L  T  L  S  M  L  R  V  F  *  L  C  *  V  S  K  W  C  L  W  D  L  L  K  V  S  E  S  T  D  F  Q  A  L  E  K  A  T  T  Y  T  P  V  A  N  I  L  T  H  S  A  L  R  M  T  L  P  H  L  L  N  S  R  *  R  K  S  K  T  E  D  *  L  C  S  P  C  L  D  S  S  F  K  L  L  L  P  V  K  A  L  L  K  T  Y  </first_frame>
            <second_frame>  A  Q  N  I  F  *  E  V  E  E  N  G  I  N  G  S  N  S  *  L  H  H  S  C  *  S  N  T  I  F  G  P  N  Q  K  C  *  P  S  *  R  C  C  C  H  G  L  C  Q  I  H  H   : E  *  *  F  V  V  R  T  *  P  C  *  V  L  G  T  L  F  C  S  N  S  F  L  L  E  R  R  V  P  W  *  L  R  M  G  H  C  W  F  I  R  *  S  R  G  L  C  Q  E  Q  S  S  *  G  T  V  I  C  S  L  T  L  T  K  K  R  T  K  I  C  I  R  P  T  F  L  R  R  H  S  F  C  L  V  T  L  N  Y  I  G  Y  P  W  K  M  G  N  A  W  C  T  R  L  H  F  P  R  S  S  *  K  M  G  E  G  R  L  Q  R  T  S  M  V  Q  S  R  I  T  N  L  Q  *  R  W  T  *  L  L  G  K  P  *  P  C  P  C  S  E  Y  S  S  C  A  R  F  P  S  G  A  Y  G  T  C  *  R  F  Q  N  Q  R  T  S  R  R  W  R  R  Q  R  L  I  P  R  W  P  I  F  *  P  T  R  P  C  G  *  P  Y  H  I  C  *  T  Q  G  K  G  N  Q  K  R  K  T  S  Y  V  L  H  V  W  I  L  R  S  S  Y  C  Y  R  *  R  P  S  *  K  P  I </second_frame>
            <third_frame>   H  K  I  Y  F  E  K  L  K  K  M  A  S  M  A  A  T  A  S  S  T  T  V  V  K  A  T  P  F  L  G  Q  T  K  N  A  N  P  L  R  D  V  V  A  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  N  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  V  Q  L  F  V  H  S  H  L  P  K  R  E  L  R  F  A  Y  V  L  P  S  S  D  A  T  H  F  A  *  *  H  *  T  I  *  V  I  H  G  R  W  A  M  L  G  A  L  G  C  I  F  P  E  V  L  E  K  W  V  K  V  D  F  K  E  P  V  W  F  K  A  G  S  Q  I  F  S  D  G  G  L  D  Y  L  G  N  P  N  L  V  H  A  Q  S  I  L  A  V  L  G  F  Q  V  V  L  M  G  L  V  E  G  F  R  I  N  G  L  P  G  V  G  E  G  N  D  L  Y  P  G  G  Q  Y  F  D  P  L  G  L  A  D  D  P  T  T  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128223" stop="128660"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127596" stop="127751"/>
                    <exon start="127953" stop="128204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKIYFEKLKKMASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVQLFVHSHLPKRELRFAYVLPSSDATHFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127646" e_stop="127751"/>
            <exon e_start="127953" e_stop="128114"/>
            <exon e_start="128223" e_stop="128248"/>
            <exon e_start="128425" e_stop="128811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="0.925"/>
          <exon-intron don_prob="0.997" acc_prob="0.507" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="127646" e_stop="127751" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="127953" e_stop="128114" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.507">
            <gDNA_intron_boundary i_start="128115" i_stop="128222" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="128223" e_stop="128248" e_length="26"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="128249" i_stop="128424" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="128425" e_stop="128811" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127646" stop="127751"/>
              <exon start="127953" stop="128114"/>
              <exon start="128223" stop="128248"/>
              <exon start="128425" stop="128811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339008" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAG : GTTATCCATGGAAGATGGGCAATGCT : TGGTGCTTATGGGACTTGTTGAAGGTTTCAGAATCAACGGACTTCCAGGCGTTGGAGAAGGCAACGACTTATACCCCGGTGGCCAATATTTTGACCCACTCGGCCTTGCGGATGACCCTACCACATTTGCTGAACTCAAGGTAAAGGAAATCAAAAACGGAAGACTAGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATTAGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTTTACGCCACTAAGTTTGTTCCTGGAGCTTAGATTTATGTTTCAATTCATTGGAAGTACTACCATTTGTGTAACTGAAATCTTCAGAAATGCAAATATATTGTAGATGCAA</gDNA_template>
            <first_frame> S  *  L  H  H  S  C  *  S  N  T  I  F  G  P  N  Q  K  C  *  P  S  *  R  C  C  C  H  G  L  C  Q  I  H  H   : E  *  *  F  V  V  R  T  *  P  C  *  V  L  G  T  L  F  C  S  N  S  F  L  L  E  R  R  V  P  W  *  L  R  M  G  H  C  W  F  I  R  *  S  R  G  L  C  Q  E  Q  S  S  *   : G  Y  P  W  K  M  G  N  A  :  W  C  L  W  D  L  L  K  V  S  E  S  T  D  F  Q  A  L  E  K  A  T  T  Y  T  P  V  A  N  I  L  T  H  S  A  L  R  M  T  L  P  H  L  L  N  S  R  *  R  K  S  K  T  E  D  *  L  C  S  P  C  L  D  S  S  F  K  L  L  L  P  V  K  A  L  L  K  T  Y  *  I  T  L  T  T  L  W  L  T  M  L  G  F  T  P  L  S  L  F  L  E  L  R  F  M  F  Q  F  I  G  S  T  T  I  C  V  T  E  I  F  R  N  A  N  I  L  *  M  Q </first_frame>
            <second_frame>  A  S  S  T  T  V  V  K  A  T  P  F  L  G  Q  T  K  N  A  N  P  L  R  D  V  V  A  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  N  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  :  V  I  H  G  R  W  A  M  L :   G  A  Y  G  T  C  *  R  F  Q  N  Q  R  T  S  R  R  W  R  R  Q  R  L  I  P  R  W  P  I  F  *  P  T  R  P  C  G  *  P  Y  H  I  C  *  T  Q  G  K  G  N  Q  K  R  K  T  S  Y  V  L  H  V  W  I  L  R  S  S  Y  C  Y  R  *  R  P  S  *  K  P  I  R  S  P  *  Q  P  C  G  *  Q  C  L  G  L  R  H  *  V  C  S  W  S  L  D  L  C  F  N  S  L  E  V  L  P  F  V  *  L  K  S  S  E  M  Q  I  Y  C  R  C   </second_frame>
            <third_frame>   L  A  P  P  Q  L  L  K  Q  H  H  F  W  A  K  P  K  M  L  T  L  L  E  M  L  L  P  W  A  L  P  D  S  P  * :   V  M  I  C  G  T  D  L  T  V  L  S  T  W  D  P  F  L  L  K  L  L  L  T  *  T  E  S  S  L  V  T  T  D  G  T  L  L  V  Y  P  L  I  P  R  P  L  P  R  T  E  L  L  R :   L  S  M  E  D  G  Q  C   : L  V  L  M  G  L  V  E  G  F  R  I  N  G  L  P  G  V  G  E  G  N  D  L  Y  P  G  G  Q  Y  F  D  P  L  G  L  A  D  D  P  T  T  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  L  D  H  L  D  N  P  V  A  N  N  A  W  V  Y  A  T  K  F  V  P  G  A  *  I  Y  V  S  I  H  W  K  Y  Y  H  L  C  N  *  N  L  Q  K  C  K  Y  I  V  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128029" stop="128114"/>
                    <exon start="128223" stop="128248"/>
                    <exon start="128425" stop="128732"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TESSLVTTDGTLLVYPLIPRPLPRTELLRLSMEDGQCLVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="127599" e_stop="127751"/>
            <exon e_start="127953" e_stop="128114"/>
            <exon e_start="128165" e_stop="128293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="0.941"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="127599" e_stop="127751" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="127953" e_stop="128114" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="128115" i_stop="128164" i_length="50"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="128165" e_stop="128293" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127599" stop="127751"/>
              <exon start="127953" stop="128114"/>
              <exon start="128165" stop="128293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAG : ATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGT</gDNA_template>
            <first_frame> K  I  Y  F  E  K  L  K  K  M  A  S  M  A  A  T  A  S  S  T  T  V  V  K  A  T  P  F  L  G  Q  T  K  N  A  N  P  L  R  D  V  V  A  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  N  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  :  I  R  P  T  F  L  R  R  H  S  F  C  L  V  T  L  N  Y  I  G  Y  P  W  K  M  G  N  A  W  C  T  R  L  H  F  P  R  S  S  *  K  M  G </first_frame>
            <second_frame>  K  Y  I  L  R  S  *  R  K  W  H  Q  W  Q  Q  Q  L  A  P  P  Q  L  L  K  Q  H  H  F  W  A  K  P  K  M  L  T  L  L  E  M  L  L  P  W  A  L  P  D  S  P  * :   V  M  I  C  G  T  D  L  T  V  L  S  T  W  D  P  F  L  L  K  L  L  L  T  *  T  E  S  S  L  V  T  T  D  G  T  L  L  V  Y  P  L  I  P  R  P  L  P  R  T  E  L  L  R :   Y  V  L  P  S  S  D  A  T  H  F  A  *  *  H  *  T  I  *  V  I  H  G  R  W  A  M  L  G  A  L  G  C  I  F  P  E  V  L  E  K  W   </second_frame>
            <third_frame>   N  I  F  *  E  V  E  E  N  G  I  N  G  S  N  S  *  L  H  H  S  C  *  S  N  T  I  F  G  P  N  Q  K  C  *  P  S  *  R  C  C  C  H  G  L  C  Q  I  H  H   : E  *  *  F  V  V  R  T  *  P  C  *  V  L  G  T  L  F  C  S  N  S  F  L  L  E  R  R  V  P  W  *  L  R  M  G  H  C  W  F  I  R  *  S  R  G  L  C  Q  E  Q  S  S  *   : D  T  S  Y  L  P  Q  T  P  L  I  L  L  S  D  I  E  L  Y  R  L  S  M  E  D  G  Q  C  L  V  H  *  V  A  F  S  P  K  F  L  K  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127599" stop="127751"/>
                    <exon start="127953" stop="128114"/>
                    <exon start="128165" stop="128284"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIYFEKLKKMASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEIRPTFLRRHSFCLVTLNYIGYPWKMGNAWCTRLHFPRSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="127596" e_stop="128363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="127596" e_stop="128363" e_length="768"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127596" stop="128363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATGGTATATATACATTATATTCTCTTTTCTTTTCTCCATGTTTTAGTTTTTATGCTAGTTTATCTTGGTATTCGCAAGCTATGGAAACAGTTTCTTGCAGTATCCTTCTCGGACCTCAGACGCGAGAGCTTGTGCATACCTTTTTTTTTCCTTTTCCTACTGGATTTGATGTGACTTGTATTTTTTTTCCTCTCATCTTATTAGAGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAGGTACAGTTATTTGTTCACTCACACTTACCAAAAAGAGAACTAAGATTTGCATACGTCCTACCTTCCTCAGACGCCACTCATTTTGCTTAGTGACATTGAACTATATAGGTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTCAGTGACGGTGGACTTGAC</gDNA_template>
            <first_frame> H  K  I  Y  F  E  K  L  K  K  M  A  S  M  A  A  T  A  S  S  T  T  V  V  K  A  T  P  F  L  G  Q  T  K  N  A  N  P  L  R  D  V  V  A  M  G  S  A  R  F  T  M  V  Y  I  H  Y  I  L  F  S  F  L  H  V  L  V  F  M  L  V  Y  L  G  I  R  K  L  W  K  Q  F  L  A  V  S  F  S  D  L  R  R  E  S  L  C  I  P  F  F  F  L  F  L  L  D  L  M  *  L  V  F  F  F  L  S  S  Y  *  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  N  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  V  Q  L  F  V  H  S  H  L  P  K  R  E  L  R  F  A  Y  V  L  P  S  S  D  A  T  H  F  A  *  *  H  *  T  I  *  V  I  H  G  R  W  A  M  L  G  A  L  G  C  I  F  P  E  V  L  E  K  W  V  K  V  D  F  K  E  P  V  W  F  K  A  G  S  Q  I  F  S  D  G  G  L  D </first_frame>
            <second_frame>  T  K  Y  I  L  R  S  *  R  K  W  H  Q  W  Q  Q  Q  L  A  P  P  Q  L  L  K  Q  H  H  F  W  A  K  P  K  M  L  T  L  L  E  M  L  L  P  W  A  L  P  D  S  P  W  Y  I  Y  I  I  F  S  F  L  F  S  M  F  *  F  L  C  *  F  I  L  V  F  A  S  Y  G  N  S  F  L  Q  Y  P  S  R  T  S  D  A  R  A  C  A  Y  L  F  F  S  F  S  Y  W  I  *  C  D  L  Y  F  F  S  S  H  L  I  R  V  M  I  C  G  T  D  L  T  V  L  S  T  W  D  P  F  L  L  K  L  L  L  T  *  T  E  S  S  L  V  T  T  D  G  T  L  L  V  Y  P  L  I  P  R  P  L  P  R  T  E  L  L  R  Y  S  Y  L  F  T  H  T  Y  Q  K  E  N  *  D  L  H  T  S  Y  L  P  Q  T  P  L  I  L  L  S  D  I  E  L  Y  R  L  S  M  E  D  G  Q  C  L  V  H  *  V  A  F  S  P  K  F  L  K  N  G  *  R  *  T  S  K  N  Q  Y  G  S  K  Q  D  H  K  S  S  V  T  V  D  L   </second_frame>
            <third_frame>   Q  N  I  F  *  E  V  E  E  N  G  I  N  G  S  N  S  *  L  H  H  S  C  *  S  N  T  I  F  G  P  N  Q  K  C  *  P  S  *  R  C  C  C  H  G  L  C  Q  I  H  H  G  I  Y  T  L  Y  S  L  F  F  S  P  C  F  S  F  Y  A  S  L  S  W  Y  S  Q  A  M  E  T  V  S  C  S  I  L  L  G  P  Q  T  R  E  L  V  H  T  F  F  F  P  F  P  T  G  F  D  V  T  C  I  F  F  P  L  I  L  L  E  *  *  F  V  V  R  T  *  P  C  *  V  L  G  T  L  F  C  S  N  S  F  L  L  E  R  R  V  P  W  *  L  R  M  G  H  C  W  F  I  R  *  S  R  G  L  C  Q  E  Q  S  S  *  G  T  V  I  C  S  L  T  L  T  K  K  R  T  K  I  C  I  R  P  T  F  L  R  R  H  S  F  C  L  V  T  L  N  Y  I  G  Y  P  W  K  M  G  N  A  W  C  T  R  L  H  F  P  R  S  S  *  K  M  G  E  G  R  L  Q  R  T  S  M  V  Q  S  R  I  T  N  L  Q  *  R  W  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127596" stop="127922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKIYFEKLKKMASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMVYIHYILFSFLHVLVFMLVYLGIRKLWKQFLAVSFSDLRRESLCIPFFFLFLLDLM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127953" stop="128204"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVQLFVHSHLPKRELRFAYVLPSSDATHFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127715" stop="127957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCCCHGLCQIHHGIYTLYSLFFSPCFSFYASLSWYSQAMETVSCSILLGPQTRELVHTFFFPFPTGFDVTCIFFPLILLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="127596" e_stop="127751"/>
            <exon e_start="127953" e_stop="128114"/>
            <exon e_start="128223" e_stop="128345"/>
            <exon e_start="128619" e_stop="128820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.507" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="127596" e_stop="127751" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="127752" i_stop="127952" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127953" e_stop="128114" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.507">
            <gDNA_intron_boundary i_start="128115" i_stop="128222" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128223" e_stop="128345" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="128346" i_stop="128618" i_length="273"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="128619" e_stop="128820" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127596" stop="127751"/>
              <exon start="127953" stop="128114"/>
              <exon start="128223" stop="128345"/>
              <exon start="128619" stop="128820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339005" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAATATATTTTGAGAAGTTGAAGAAAATGGCATCAATGGCAGCAACAGCTAGCTCCACCACAGTTGTTAAAGCAACACCATTTTTGGGCCAAACCAAAAATGCTAACCCTCTTAGAGATGTTGTTGCCATGGGCTCTGCCAGATTCACCATG : AGTAATGATTTGTGGTACGGACCTGACCGTGTTAAGTACTTGGGACCCTTTTCTGCTCAAACTCCTTCTTACTTGAACGGAGAGTTCCCTGGTGACTACGGATGGGACACTGCTGGTTTATCCGCTGATCCCGAGGCCTTTGCCAAGAACAGAGCTCTTGAG : GTTATCCATGGAAGATGGGCAATGCTTGGTGCACTAGGTTGCATTTTCCCCGAAGTTCTTGAAAAATGGGTGAAGGTAGACTTCAAAGAACCAGTATGGTTCAAAGCAGGATCACAAATCTTC : GTTCAAGCTATTGTTACCGGTAAAGGCCCTCTTGAAAACCTATTAGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTTTACGCCACTAAGTTTGTTCCTGGAGCTTAGATTTATGTTTCAATTCATTGGAAGTACTACCATTTGTGTAACTGAAATCTTCAGAAATGCAAATATATTGTAGATGCAAATCGTTTCA</gDNA_template>
            <first_frame> H  K  I  Y  F  E  K  L  K  K  M  A  S  M  A  A  T  A  S  S  T  T  V  V  K  A  T  P  F  L  G  Q  T  K  N  A  N  P  L  R  D  V  V  A  M  G  S  A  R  F  T  M  :  S  N  D  L  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  A  Q  T  P  S  Y  L  N  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  A  F  A  K  N  R  A  L  E  :  V  I  H  G  R  W  A  M  L  G  A  L  G  C  I  F  P  E  V  L  E  K  W  V  K  V  D  F  K  E  P  V  W  F  K  A  G  S  Q  I  F  :  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  L  D  H  L  D  N  P  V  A  N  N  A  W  V  Y  A  T  K  F  V  P  G  A  *  I  Y  V  S  I  H  W  K  Y  Y  H  L  C  N  *  N  L  Q  K  C  K  Y  I  V  D  A  N  R  F  </first_frame>
            <second_frame>  T  K  Y  I  L  R  S  *  R  K  W  H  Q  W  Q  Q  Q  L  A  P  P  Q  L  L  K  Q  H  H  F  W  A  K  P  K  M  L  T  L  L  E  M  L  L  P  W  A  L  P  D  S  P  * :   V  M  I  C  G  T  D  L  T  V  L  S  T  W  D  P  F  L  L  K  L  L  L  T  *  T  E  S  S  L  V  T  T  D  G  T  L  L  V  Y  P  L  I  P  R  P  L  P  R  T  E  L  L  R :   L  S  M  E  D  G  Q  C  L  V  H  *  V  A  F  S  P  K  F  L  K  N  G  *  R  *  T  S  K  N  Q  Y  G  S  K  Q  D  H  K  S  S :   F  K  L  L  L  P  V  K  A  L  L  K  T  Y  *  I  T  L  T  T  L  W  L  T  M  L  G  F  T  P  L  S  L  F  L  E  L  R  F  M  F  Q  F  I  G  S  T  T  I  C  V  T  E  I  F  R  N  A  N  I  L  *  M  Q  I  V  S </second_frame>
            <third_frame>   Q  N  I  F  *  E  V  E  E  N  G  I  N  G  S  N  S  *  L  H  H  S  C  *  S  N  T  I  F  G  P  N  Q  K  C  *  P  S  *  R  C  C  C  H  G  L  C  Q  I  H  H   : E  *  *  F  V  V  R  T  *  P  C  *  V  L  G  T  L  F  C  S  N  S  F  L  L  E  R  R  V  P  W  *  L  R  M  G  H  C  W  F  I  R  *  S  R  G  L  C  Q  E  Q  S  S  *   : G  Y  P  W  K  M  G  N  A  W  C  T  R  L  H  F  P  R  S  S  *  K  M  G  E  G  R  L  Q  R  T  S  M  V  Q  S  R  I  T  N  L   : R  S  S  Y  C  Y  R  *  R  P  S  *  K  P  I  R  S  P  *  Q  P  C  G  *  Q  C  L  G  L  R  H  *  V  C  S  W  S  L  D  L  C  F  N  S  L  E  V  L  P  F  V  *  L  K  S  S  E  M  Q  I  Y  C  R  C  K  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127596" stop="127751"/>
                    <exon start="127953" stop="128114"/>
                    <exon start="128223" stop="128345"/>
                    <exon start="128619" stop="128732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKIYFEKLKKMASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="129467" PGL_stop="128763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129467" e_stop="128763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="129467" e_stop="128763" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129467" stop="128763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACACTATTCAAACCCCAAAATCCCCCAAATTTTCCCTTCAATGGCTCCAAAGGCAGAGAAGAAGCCATCAGCTGAGAAAGCTCCTAAGGCCGGCAAGAAGCTGCCGAAGGACGGCGGAGCTGCTGCTGCTGGAGACAAGAAGAAGAAGAAATCGAAGAAGTCGATTGAGACATACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATAGGTATTTCAAGTAAGGCTATGGGAATCATGAACAGCTTCATCAATGATATCTTCGAGAAGCTTGCTCAGGAATCATCCAGGCTTGCTAGGTACAACAAAAAGCCTACCATCACTTCTCGGGAGATTCAAACTGCTGTTCGATTGGTCCTTCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACTAAAGCTGTTACCAAATTCACTAGCTCTTAGATTTAGATTTGTTTGTTTTCTGTCGATTTTTCTGTTGGATTTATGATTTTCGATTAGATTTGGTGTGAAGAACAGAAGAATTGAATATAGAATAGATTTGATTGAGTTCAGTAAATGAAATTGTTATATCCAAATTTTCTATTCTAATAGTTCATTTTTGTGCTCATGACCTCTTTTATCTCTACAAATGTTAGTAAACAAAGGTTGAAACGATTTGCATCTACAATATATTTGCATTTCTGAAGATTTCAGTTACACAAATG</gDNA_template>
            <first_frame> F  T  L  F  K  P  Q  N  P  P  N  F  P  F  N  G  S  K  G  R  E  E  A  I  S  *  E  S  S  *  G  R  Q  E  A  A  E  G  R  R  S  C  C  C  W  R  Q  E  E  E  E  I  E  E  V  D  *  D  I  Q  D  L  H  L  Q  G  V  E  A  G  S  S  R  Y  R  Y  F  K  *  G  Y  G  N  H  E  Q  L  H  Q  *  Y  L  R  E  A  C  S  G  I  I  Q  A  C  *  V  Q  Q  K  A  Y  H  H  F  S  G  D  S  N  C  C  S  I  G  P  S  R  *  I  G  *  A  R  R  L  *  G  Y  *  S  C  Y  Q  I  H  *  L  L  D  L  D  L  F  V  F  C  R  F  F  C  W  I  Y  D  F  R  L  D  L  V  *  R  T  E  E  L  N  I  E  *  I  *  L  S  S  V  N  E  I  V  I  S  K  F  S  I  L  I  V  H  F  C  A  H  D  L  F  Y  L  Y  K  C  *  *  T  K  V  E  T  I  C  I  Y  N  I  F  A  F  L  K  I  S  V  T  Q  M </first_frame>
            <second_frame>  S  H  Y  S  N  P  K  I  P  Q  I  F  P  S  M  A  P  K  A  E  K  K  P  S  A  E  K  A  P  K  A  G  K  K  L  P  K  D  G  G  A  A  A  A  G  D  K  K  K  K  K  S  K  K  S  I  E  T  Y  K  I  Y  I  F  K  V  L  K  Q  V  H  P  D  I  G  I  S  S  K  A  M  G  I  M  N  S  F  I  N  D  I  F  E  K  L  A  Q  E  S  S  R  L  A  R  Y  N  K  K  P  T  I  T  S  R  E  I  Q  T  A  V  R  L  V  L  P  G  E  L  A  K  H  A  V  S  E  G  T  K  A  V  T  K  F  T  S  S  *  I  *  I  C  L  F  S  V  D  F  S  V  G  F  M  I  F  D  *  I  W  C  E  E  Q  K  N  *  I  *  N  R  F  D  *  V  Q  *  M  K  L  L  Y  P  N  F  L  F  *  *  F  I  F  V  L  M  T  S  F  I  S  T  N  V  S  K  Q  R  L  K  R  F  A  S  T  I  Y  L  H  F  *  R  F  Q  L  H  K   </second_frame>
            <third_frame>   H  T  I  Q  T  P  K  S  P  K  F  S  L  Q  W  L  Q  R  Q  R  R  S  H  Q  L  R  K  L  L  R  P  A  R  S  C  R  R  T  A  E  L  L  L  L  E  T  R  R  R  R  N  R  R  S  R  L  R  H  T  R  S  T  S  S  R  C  *  S  R  F  I  Q  I  *  V  F  Q  V  R  L  W  E  S  *  T  A  S  S  M  I  S  S  R  S  L  L  R  N  H  P  G  L  L  G  T  T  K  S  L  P  S  L  L  G  R  F  K  L  L  F  D  W  S  F  P  V  N  W  L  S  T  P  S  L  R  V  L  K  L  L  P  N  S  L  A  L  R  F  R  F  V  C  F  L  S  I  F  L  L  D  L  *  F  S  I  R  F  G  V  K  N  R  R  I  E  Y  R  I  D  L  I  E  F  S  K  *  N  C  Y  I  Q  I  F  Y  S  N  S  S  F  L  C  S  *  P  L  L  S  L  Q  M  L  V  N  K  G  *  N  D  L  H  L  Q  Y  I  C  I  S  E  D  F  S  Y  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020N16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129466" stop="129026"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHYSNPKIPQIFPSMAPKAEKKPSAEKAPKAGKKLPKDGGAAAAGDKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 90 chains have been computed
$ 
$ memory statistics:
$ 201808 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 8408 bytes was the average size of a spliced alignment
$ 25336 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1583 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 111 backtrace matrices have been allocated
$ 
$ date finished: 2009-04-06 08:30:06
-->
