<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:17:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372441" ref_strand="+" ref_description="SGN-E372441 [TUS-32-K20](-)">
      <seq>atgcctcaatctcaaatgttacgttgggatttgatgataataggataaagacttccaagaacgtatcgtcagccagctctactgaaaacatgcaaaaagcacagggacatattcttgtaaaggggcaattggttgtcagtgggatcgggagtacccaacaagtctataaatataaggatgattcattctgctactccaggaacataagcagctcaaattacacaatacattatgataaagttagcgataattgccccagaatcactttgtctcgtttgcctttcagctttggcaaatttcaatctgttcctgctcgaagggtctctttggcatctcatcttggtgatgttaaagatggtgtctgacattgctccattttattgtcttccactccttcaacataacagttcctctatgtttactgctgtcaaagaagttgtcaactgtcacggccttccaattatgattgtaaggcaatacttttgcattgcctcttttgtttcttgcgtttgttcgggttttcactttgtgcaataagagacaagtttcaaacaatagcatcaccttgcatttgtgttgctggatattccaagattaaacttcactaaaattgtcaccagtggttttccctgggagaattatacttaaagtgatattacaatttacctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3588" stop="2318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3288" g_stop="2611" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E372441" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3288" e_stop="2611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTATTGTCTTCCACTCCTTCAACATAACAGTTCCTCTATGTTTACTGCTGTCAAAGAAGTTGTCAACTGTCACGGCCTTCCAATTATGATTGTAAGGCAATACTTCTGCATTGCCTCTTTTGTTTCTTGCGTTTGTTCGGGTTTTCACTTTGTGCAATAAGAGACAAGTTTCAAACAATAGCATCACCTTGCATTTGTGTTGCTGGATATTCCAAGATTAAACTTCACTAAAATTGTCACCAGTGGTTTTCCCTGGGAGAATTATACTTAAAGTGATATTACAATTTACCTGAATCACTTT</genome_strand>
        <mrna_strand>ATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTATTGTCTTCCACTCCTTCAACATAACAGTTCCTCTATGTTTACTGCTGTCAAAGAAGTTGTCAACTGTCACGGCCTTCCAATTATGATTGTAAGGCAATACTTTTGCATTGCCTCTTTTGTTTCTTGCGTTTGTTCGGGTTTTCACTTTGTGCAATAAGAGACAAGTTTCAAACAATAGCATCACCTTGCATTTGTGTTGCTGGATATTCCAAGATTAAACTTCACTAAAATTGTCACCAGTGGTTTTCCCTGGGAGAATTATACTTAAAGTGATATTACAATTTACCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372442" ref_strand="+" ref_description="SGN-E372442 [TUS-32-K20]">
      <seq>ccagctctactgaaaacatgcaaaaagcagaaactgttgatgtcgtgaggccaacttcatatgttcagtctcgtaagtccttcaaaaagtttctgcttctcttgcattctgacaatgtagacaaaggagatgaaagctatgcctcaatctcaaatgttacgttgggatttgatgataataggataaagacttccaagaacgtatcgtcagccagctctactgaaaacatgcaaaaagcacagggacatattcttgtaaaggggcaattggttgtcagtgggatcgggagtacccaacaagtctataaatataaggatgattcattctgctactccaggaacataagcagctcaaattacacaatacattatgataaagttagcgataattgccccagaatcactttgtctcgtttgcctttcagctttggcaaatttcaatctgttcctgctcgaagggtctctttggcatctcatcttggtgatgttaaagatggtgtctgacattgctccattttattgtcttccactccttcaacataacagttcctctatgtttactgctgtcaaagaagttgtcaactgtcacggccttccaattatgattgtaaggcaatacttctgcattgcctcttttgtttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3697" stop="2483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3397" g_stop="2783" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="644" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E372442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3397" e_stop="2783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTATTGTCTTCCACTCCTTCAACATAACAGTTCCTCTATGTTTACTGCTGTCAAAGAAGTTGTCAACTGTCACGGCCTTCCAATTATGATTGTAAGGCAATACTTCTGCATTGCCTCTTTTGTTTCTTG</genome_strand>
        <mrna_strand>GAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTATTGTCTTCCACTCCTTCAACATAACAGTTCCTCTATGTTTACTGCTGTCAAAGAAGTTGTCAACTGTCACGGCCTTCCAATTATGATTGTAAGGCAATACTTCTGCATTGCCTCTTTTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462046" ref_strand="+" ref_description="SGN-E462046 [cPRO-10-M14]">
      <seq>ttcgttttctcttatgacaaattttacaggcattgatggatcttttgtcacaaatgctagtagatcaatcacattgacaggatgggtaaagtcctcctatgggaacatcactactaagtcagctcaaggtttaagttatagtaattatatggtggagggaaacggaggaaatttgcaaaatgtggatcagattatttatttcaatgaaactgttgatgttgtgatgccatcttcatctgtccagtctcttgagtcctttaaaaagtttctgcttctcttgcattctgacgatgtagacaaaggagacgaaagctatgcctcaatctcaaatgttacgctgggatttaatgataagagggtaaagacgtccaagaacggatcatcagccagctctactgaaaacatgcaaaaagcacagggccatattcttgtaaagggccggatagtagtcagcggggttgggagtacccaacaggtctacaaatataagggcaattcattctgctactccaggaacataagcagctcaaattacacaatacactatgataaagttagcgatagttgccccagaagcactttgtctcgtttgcctttcagctttggcaaatttcggtctgttcctgctcgaagggtctctttggcatctcatcttggtgatgttaaagatggtgtctgacattgctccaattcattgtcttccactncttcaacataacaattcctctttgtgaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3902" stop="2563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3602" g_stop="2863" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E462046" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3602" e_stop="2863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTCTCTTAGGACAAATTTTACAGGCATTGATGGATCTTTCGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTTAAGTCATCCTACGGGAACATCACTACTAAGTCAGCTCAAGTTTTAAGTTATAGTAATTATATGGTGGAGGGTAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTATTGTCTTCCACTCCTTCAACATAACAGTTCCTCTATGTTTACTGCT</genome_strand>
        <mrna_strand>TTCGTTTTCTCTTATGACAAATTTTACAGGCATTGATGGATCTTTTGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTAAAGTCCTCCTATGGGAACATCACTACTAAGTCAGCTCAAGGTTTAAGTTATAGTAATTATATGGTGGAGGGAAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTTGTGATGCCATCTTCATCTGTCCAGTCTCTTGAGTCCTTTAAAAAGTTTCTGCTTCTCTTGCATTCTGACGATGTAGACAAAGGAGACGAAAGCTATGCCTCAATCTCAAATGTTACGCTGGGATTTAATGATAAGAGGGTAAAGACGTCCAAGAACGGATCATCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGCCATATTCTTGTAAAGGGCCGGATAGTAGTCAGCGGGGTTGGGAGTACCCAACAGGTCTACAAATATAAGGGCAATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACACTATGATAAAGTTAGCGATAGTTGCCCCAGAAGCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCGGTCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCAATTCATTGTCTTCCACTNCTTCAACATAACAATTCCTCTTTGTGAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294173" ref_strand="+" ref_description="SGN-E294173 [cLET-13-H4]">
      <seq>ccagctctactgaaaacatgcaaaaagcagaaactgttgatgtcgtgaggccaacttcatatgttcagtctcgtaagtccttcaaaaagtttctgcttctcttgcattctgacaatgtagacaaaggagatgaaagctatgcctcaatctcaaatgttacgttgggatttgatgataataggataaagacttccaagaacgtatcgtcagccagctctactgaaaacatgcaaaaagcacagggacatattcttgtaaaggggcaattggttgtcagtgggatcgggagtacccaacaagtctataaatataaggatgattcattctgctactccaggaacataagcagctcaaattacacaatacattatgataaagttagcgataattgccccagaatcactttgtctcgtttgcctttcagctttggcaaatttcaatctgttcctgctcgaagggtctctttggcatctcatcttggtgatgttaaagatggtgtctgacattgctccatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3697" stop="2609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3397" g_stop="2909" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="518" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E294173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3397" e_stop="2909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTA</genome_strand>
        <mrna_strand>GAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430543" ref_strand="+" ref_description="SGN-E430543 [STM-53-H22]">
      <seq>ttcgttttctcttatgacaaattttacaggcattgatggatcttttgtcacaaatgctagtagatcaatcacattgacaggatgggtaaagtcctcctatgggaacatcactactaagtcagctcaaggtttaagttatagtaattatatggtggagggaaacggaggaaatttgcaaaatgtggatcagattatttatttcaatgaaactgttgatgttgtgatgccatcttcatctgtccagtctcttgagtcctttaaaaagtttctgcttctcttgcattctgacgatgtagacaaaggagacgaaagctatgcctcaatctcaaatgttacgctgggatttaatgataagagggtaaagacgtccaagaacggatcatcagccagctctactgaaaacatgcaaaaagcacagggccatattcttgtaaagggccggatagtagtcagcggggttgggagtacccaacaggtctacaaatataagggcaattcattctgctactccaggaacataagcagctcaaattacacaatacactatgataaagttagcgatagttgccccagaagcactttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3902" stop="2717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3602" g_stop="3017" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E430543" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3602" e_stop="3017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTCTCTTAGGACAAATTTTACAGGCATTGATGGATCTTTCGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTTAAGTCATCCTACGGGAACATCACTACTAAGTCAGCTCAAGTTTTAAGTTATAGTAATTATATGGTGGAGGGTAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCT</genome_strand>
        <mrna_strand>TTCGTTTTCTCTTATGACAAATTTTACAGGCATTGATGGATCTTTTGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTAAAGTCCTCCTATGGGAACATCACTACTAAGTCAGCTCAAGGTTTAAGTTATAGTAATTATATGGTGGAGGGAAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTTGTGATGCCATCTTCATCTGTCCAGTCTCTTGAGTCCTTTAAAAAGTTTCTGCTTCTCTTGCATTCTGACGATGTAGACAAAGGAGACGAAAGCTATGCCTCAATCTCAAATGTTACGCTGGGATTTAATGATAAGAGGGTAAAGACGTCCAAGAACGGATCATCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGCCATATTCTTGTAAAGGGCCGGATAGTAGTCAGCGGGGTTGGGAGTACCCAACAGGTCTACAAATATAAGGGCAATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACACTATGATAAAGTTAGCGATAGTTGCCCCAGAAGCACTTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465223" ref_strand="+" ref_description="SGN-E465223 [cPRO-20-O22]">
      <seq>ttcgttttctcttatgacaaattttacaggcattgatggatcttttgtcacaaatgctagtagatcaatcacattgacaggatgggtaaagtcctcctatgggaacatcactactaagtcagctcaaggtttaagttatagtaattatatggtggagggaaacggaggaaatttgcaaaatgtggatcagattatttatttcaatgaaactgttgatgttgtgatgccatcttcatctgtccagtctcttgagtcctttaaaaagtttctgcttctcttgcattctgacgatgtagacaaaggagacgaaagctatgcctcaatctcaaatgttacgctgggatttaatgataagagggtaaagacgtccaagaacggatcatcagccagctctactgaaaacatgcaaaaagcacagggccatattcttgtaaagggccggatagtagtcagcggggttgggagtacccaacaggtctaccaatataagggcaattcattctgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3902" stop="2863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3602" g_stop="3094" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E465223" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3602" e_stop="3094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTCTCTTAGGACAAATTTTACAGGCATTGATGGATCTTTCGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTTAAGTCATCCTACGGGAACATCACTACTAAGTCAGCTCAAGTTTTAAGTTATAGTAATTATATGGTGGAGGGTAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACT</genome_strand>
        <mrna_strand>TTCGTTTTCTCTTATGACAAATTTTACAGGCATTGATGGATCTTTTGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTAAAGTCCTCCTATGGGAACATCACTACTAAGTCAGCTCAAGGTTTAAGTTATAGTAATTATATGGTGGAGGGAAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTTGTGATGCCATCTTCATCTGTCCAGTCTCTTGAGTCCTTTAAAAAGTTTCTGCTTCTCTTGCATTCTGACGATGTAGACAAAGGAGACGAAAGCTATGCCTCAATCTCAAATGTTACGCTGGGATTTAATGATAAGAGGGTAAAGACGTCCAAGAACGGATCATCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGCCATATTCTTGTAAAGGGCCGGATAGTAGTCAGCGGGGTTGGGAGTACCCAACAGGTCTACCAATATAAGGGCAATTCATTCTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562229" ref_strand="+" ref_description="SGN-E562229 [669]">
      <seq>ctttaaactttgagctgacttagtagtgatatttcccataagatgacttttacccatcctgtcaaatgtgattggaatctgctagcatttgtgatgaaagatccatcaatgcctgtaaaatttgtcataagagaaaacgaaagagcagactactatacttcaataacttcccttctgtctttatactcttctcatccaaccaaagatgcaaatttgcatcaatgtaccacacattaagagcattcgtgacactgaatgaaatcttatgcgtatttccatctaaaatcttccctaaaaatggcgtaatttcaatatcatacgatggaagatcaaacgatccgatcccactgataggtctccacaagagaggattgacacccccagtataaatcacagtgaatggccaaactgcaccaaccacgacatcatccacactaactactacttccctaaaagctcccattcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="3187" stop="4228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3468" g_stop="3930" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E562229" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3468" e_stop="3930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAC-TTGAGCTGACTTAGTAGTGATGT-TCCCGTAGGATGAC-TTAACCCATCCTGTC-AATGTGATT-G-ATCTACTAGCATTTGTGACGAAAGATCCATCAATGCCTGTAAAATTTGTCCTAAGAGAAAACGAAAGAGGCAGACTAGTATACTTCAATAACTTCCCTTCTGTCTTTATACTCTTATCATCCAACCAAAGATGCAAATTTGCATCAATGTACCACACATTAAGAGCATTAGTGACACTGAATGAAATCTTATGCATATTTCCGTCTAAAATCTTCCCTATAAATGGCGTTATTTCAATATCATATGATGGAAGATCAAACGATCCGATCCCGCTTATAGGTCTCCACAAGAGAGGATTGACACCCCCGGTATAGATCACCGTGAACGGCCAAACTACACCAACCACCACATCATCCACACTAACTACTACTTCCCTAAAAGCT-CCATTCCCTG</genome_strand>
        <mrna_strand>CTTTAAACTTTGAGCTGACTTAGTAGTGATATTTCCCATAAGATGACTTTTACCCATCCTGTCAAATGTGATTGGAATCTGCTAGCATTTGTGATGAAAGATCCATCAATGCCTGTAAAATTTGTCATAAGAGAAAACGAAAGA-GCAGACTACTATACTTCAATAACTTCCCTTCTGTCTTTATACTCTTCTCATCCAACCAAAGATGCAAATTTGCATCAATGTACCACACATTAAGAGCATTCGTGACACTGAATGAAATCTTATGCGTATTTCCATCTAAAATCTTCCCTAAAAATGGCGTAATTTCAATATCATACGATGGAAGATCAAACGATCCGATCCCACTGATAGGTCTCCACAAGAGAGGATTGACACCCCCAGTATAAATCACAGTGAATGGCCAAACTGCACCAACCACGACATCATCCACACTAACTACTACTTCCCTAAAAGCTCCCATTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707849" ref_strand="+" ref_description="SGN-E707849 [FA34AF01]">
      <seq>cctttgtgatgtgaggaatttggtctgagcggtgaagtatctcatcggcggcggctctattgaacggtgaacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctctcttctcttcttctaccttttctaggcacttaagtttgtccaatttagttagaccaattcttggaaatccagaaaagtttttgaacttgtcaaggttagtgcttaaggagaggttaatccaacaaaacccctgttgggaatcaaggaactttagtcatggaagattggattttgtgatgacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagtcggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgctaattgagagactaaagagatatgaggttaccaaagttcaaggtcccgaggttaagccacattttctcactggtgaagaacgattctatattaaaaagatggcacaaaaaaagtctaattatgtgcctattggcaaaaggggagtctttggaggtgttattcttaatatgcatctacattggaaaagacatgaaactgtcaaagtcatatgcaaaccctgcaaacctggtcagattcaagaatatgttgatgaaattgcaagactgagtggtggcattccgattcagataattgcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6146" stop="9160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6441" g_stop="6603" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7115" i_length="512">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7116" g_stop="7488" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="536" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8860" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="858" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E707849" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6441" e_stop="6603"/>
          <exon e_start="7116" e_stop="7488"/>
          <exon e_start="8539" e_stop="8860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATG</genome_strand>
        <mrna_strand>CCTTTGTGATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343371" ref_strand="+" ref_description="SGN-E343371 [cTOF-19-A6]">
      <seq>tgaagttatgtgaggaatttggtctgagcggtgaagtatctcatcggcggcggctctattgaacggtgaacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctatcttctcttcttctaccttttctaggcacttaagtttgtccaatttagttagaccaattcttggaaatccagaaaagtttttgaacttgtcaaggttagtgcttaaggagaggttaatccaacaaaacccctgttgggaatcaaggaactttagtcatggaagattggattttgtgatgacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagtcggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgctaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6142" stop="8868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6442" g_stop="6603" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7115" i_length="512">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7116" g_stop="7488" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="535" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8568" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="565" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E343371" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6442" e_stop="6603"/>
          <exon e_start="7116" e_stop="7488"/>
          <exon e_start="8539" e_stop="8568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAG</genome_strand>
        <mrna_strand>TGAAGTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTATCTTCTCTTCTTCTACCTTTTCTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGCTAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443562" ref_strand="+" ref_description="SGN-E443562 [cSTA-38-L10]">
      <seq>gttatgtgaggaatttggtgtgagcggtgaagtagctcatcagcggcggcactattgcacggcgaacggcgtacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctctctcctcttcttctacctcttccagaccaattcttggaaatccagaaaattttttgcacttgtcaaggttagttcttaaggataggttaatcccacaaaacccctgttgggaatcaaggaactttagtcatggaagagtggattttgtgataacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagacggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatcccagaagacttggtgttcaggggaagaagaagaagcagaagtttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagccatgctaattgagagactaaagcgatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6146" stop="8885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6446" g_stop="6603" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7142" i_length="539">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7143" g_stop="7488" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="511" r_length="346" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8585" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="558" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E443562" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6446" e_stop="6603"/>
          <exon e_start="7143" e_stop="7488"/>
          <exon e_start="8539" e_stop="8585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTG-A-----A-CGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGA</genome_strand>
        <mrna_strand>GTTATGTGAGGAATTTGGTGTGAGCGGTGAAGTAGCTCATCAGCGGCGGCACTATTGCACGGCGAACGGCGTACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTCCTCTTCTTCTACCTCTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATTCTTGGAAATCCAGAAAATTTTTTGCACTTGTCAAGGTTAGTTCTTAAGGATAGGTTAATCCCACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGAGTGGATTTTGTGATAACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGACGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCCAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCCATGCTAATTGAGAGACTAAAGCGATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419158" ref_strand="+" ref_description="SGN-E419158 [STM-29-G9]">
      <seq>gttatgtgaggaatttggtgtgagcggtgaagtagctcatcagcggcggcactattgcacggcgaacggcgtacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctctctcctcttcttctacctcttccagaccaattcttggaaatccagaaaattttttgcacttgtcaaggttagttcttaaggataggttaatcccacaaaacccctgttgggaatcaaggaactttagtcatggaagagtggattttgtgataacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagacggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatcccagaagacttggtgttcaggggaagaagaagaagcagaagtttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagccatgctaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6146" stop="8868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6446" g_stop="6603" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7142" i_length="539">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7143" g_stop="7488" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="511" r_length="346" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8568" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="541" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E419158" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6446" e_stop="6603"/>
          <exon e_start="7143" e_stop="7488"/>
          <exon e_start="8539" e_stop="8568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTG-A-----A-CGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAG</genome_strand>
        <mrna_strand>GTTATGTGAGGAATTTGGTGTGAGCGGTGAAGTAGCTCATCAGCGGCGGCACTATTGCACGGCGAACGGCGTACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTCCTCTTCTTCTACCTCTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATTCTTGGAAATCCAGAAAATTTTTTGCACTTGTCAAGGTTAGTTCTTAAGGATAGGTTAATCCCACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGAGTGGATTTTGTGATAACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGACGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCCAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCCATGCTAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274131" ref_strand="+" ref_description="SGN-E274131 [cLEN-8-A12]">
      <seq>aatttggtctgagcggtgaagtatctcatcggcggcggctctattgaacggtgaacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctctcttctcttcttctaccttttctaggcacttaagtttgtccaatttagttagaccaattcttggaaatccagaaaagtttttgaacttgtcaaggttagtgcttaaggagaggttaatccaacaaaacccctgttgggaatcaaggaactttagtcatggaagattggattttgtgatgacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagtcggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6157" stop="8860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6457" g_stop="6603" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7115" i_length="512">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7116" g_stop="7488" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="520" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8560" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="542" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E274131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6457" e_stop="6603"/>
          <exon e_start="7116" e_stop="7488"/>
          <exon e_start="8539" e_stop="8560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGC</genome_strand>
        <mrna_strand>AATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449430" ref_strand="+" ref_description="SGN-E449430 [cSTS-6-B1]">
      <seq>gtagctcatccagcggcggccctattgcacggcgaacggagaacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctctctgctcttcttctacctcttccagaccaattcttggaaatccagaaaacttcttgcacttgtcaaggttagttcttaaggataggttaatcccacaaaacccctgttgggaatcaaggaactttagtcatggaagagtggattttgtgataacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagacggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatcccagaagacttggtgttcaggggaagaagaagaagcagaagtttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagccatgctaattgagagactaaagcgatatgaggtttccaaagttcaaggtcctgaggttgagccgcactttctcactggtgaagaacgattctatattaaaaagatggcacaagaaaagtctaattatgtgccaattggcaaaagggtgtctttggaggtgttattcttaatatgcatctacattggaaaaagcatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6202" stop="9057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6502" g_stop="6603" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="135" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7142" i_length="539">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7143" g_stop="7488" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="481" r_length="346" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8757" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="699" r_length="218" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E449430" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6502" e_stop="6603"/>
          <exon e_start="7143" e_stop="7488"/>
          <exon e_start="8539" e_stop="8757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACT</genome_strand>
        <mrna_strand>GAACGGAGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTGCTCTTCTTCTACCTCTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATTCTTGGAAATCCAGAAAACTTCTTGCACTTGTCAAGGTTAGTTCTTAAGGATAGGTTAATCCCACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGAGTGGATTTTGTGATAACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGACGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCCAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCCATGCTAATTGAGAGACTAAAGCGATATGAGGTTTCCAAAGTTCAAGGTCCTGAGGTTGAGCCGCACTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAGAAAAGTCTAATTATGTGCCAATTGGCAAAA-GGGTGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAAGCATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478076" ref_strand="+" ref_description="SGN-E478076 [cSTD-3-E1]">
      <seq>cctcgtgccgctcatccagcggcggccctattgcacggcgaacggagaacggcgtatgacaaatcctctgtttcgaggttttcgaagacttgccttactttcacttagcaagcctctctcctcttcttctacctcttccagaccaattcttggaaatccagaaaacttcttgcacttgtcaaggttagttcttaaggataggttaatcccacaaaacccctgttgggaatcaaggaactttagtcatggaagagtggattttgtgataacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagacggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatcccagaagacttggtgttcaggggaagaagaagaagcagaagtttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagccatgctaattgagagactaaagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6202" stop="8880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6502" g_stop="6603" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="141" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7142" i_length="539">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7143" g_stop="7488" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="487" r_length="346" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8539" g_stop="8580" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="529" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E478076" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6502" e_stop="6603"/>
          <exon e_start="7143" e_stop="7488"/>
          <exon e_start="8539" e_stop="8580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGA</genome_strand>
        <mrna_strand>GAACGGAGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTCCTCTTCTTCTACCTCTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATTCTTGGAAATCCAGAAAACTTCTTGCACTTGTCAAGGTTAGTTCTTAAGGATAGGTTAATCCCACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGAGTGGATTTTGTGATAACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGACGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCCAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCCATGCTAATTGAGAGACTAAAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474459" ref_strand="+" ref_description="SGN-E474459 [cSTB-36-J5]">
      <seq>agctcatcagcggcggcagtattgcacggcgaacggagaacggcgtatgacaaatcctctgtttcgaggttttggaagatttgccttacttttacttcgcaagcctctctcctcttcttctaccttttccagaccaattcttggaaatccagaaagctttttacacttttcaacgttagtgcttaagaataggttaatcccacaaaacccctgttgggaatcaaggaactttagtcatggaagagtggattttgtgataacaagagatgggaaactaaagtttgaggaacatgaagtggaggcaccaaagacggagaaatggaagacaaagaagaagctgaagctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatcccagaagacttggcgttcaggggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6202" stop="7734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6502" g_stop="6603" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="132" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6604" i_stop="7142" i_length="539">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7143" g_stop="7434" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="424" r_length="292" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E474459" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6502" e_stop="6603"/>
          <exon e_start="7143" e_stop="7434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAGGTAAAGCTTAAATTTTTTTTCAAAATTTCTCTACAATTTCCTTTTAAGTTAGTTTTGGTTATGCTTAATAGGTATTTGGAATCATGATTTCGAATCAGCATTTGAACATGAGATATGAAATTATTAGATCAAATGAGCATTTGCATATCAGGATATGTTATGTGGATTGTGGAATCACTATTCTAAATCAGTCTTTCGATATACATCATGACTTCAAGTTTTAAAAAAGATATGATTTGATAAGTTTATGTTTTGTATAAAAGATTCAACATTTTGAATTTTGCAAAAAAAGATTCATGATGTGGTGCTTTTGGATATTTTGGTATTTAGTTAGTGAATTATGATTTGATCATTAGGTAAGCTTGTATAGGAATTGGAAAAATATTGATAGTTTACAGTTCGTAGATTTTTCGTGTTTATGAGAAAAATACAACTTAAGCAATCTAATTGCATTGCTTGTACAAACAGAACTTCAATTTTAAATTAATCTAACTTATGTCGCGTGCGAACAGGCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAG</genome_strand>
        <mrna_strand>GAACGGAGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTGGAAGATTTGCCTTACTTTTACTTCGCAAGCCTCTCTCCTCTTCTTCTACCTTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATTCTTGGAAATCCAGAAAGCTTTTTACACTTTTCAACGTTAGTGCTTAAGAATAGGTTAATCCCACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGAGTGGATTTTGTGATAACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGACGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCCAGAAGACTTGGCGTTCAGGGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541547" ref_strand="+" ref_description="SGN-E541547 [TUS-62-G8]">
      <seq>ctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgctaattgagagactaaagagatatgaggttaccaaagttcaaggtcccgaggttaagccacattttctcactggtgaagaacgattctatattaaaaagatggcacaaaagaagtctaattatgtgcctattgggcaaaaggggagtctttggaggtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="7054" stop="9019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7354" g_stop="7488" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8539" g_stop="8719" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="317" r_length="182" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E541547" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7354" e_stop="7488"/>
          <exon e_start="8539" e_stop="8719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATT-GGCAAAAGGGGAGTCTTTGGAGGTGTTA</genome_strand>
        <mrna_strand>CTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAGAAGTCTAATTATGTGCCTATTGGGCAAAAGGGGAGTCTTTGGAGGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298313" ref_strand="+" ref_description="SGN-E298313 [cLET-41-A10]">
      <seq>tgcaaaggaagagggagaagaagaagagtattgctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgctaattgagagactaaagagatatgaggttaccaaagttcaaggtcccgaggttaagccacattttctcactggtgaagaacgattctatattaaaaagatggcacaaaaaaagtctaattatgtgcctattggcaaaaggggagtctttggaggtgttattcttaatatgcatctacattggaaaagacatgaaactgtcaaagtcatatgcaaaccctgcaaacctggtcagattcaagaatatgttgatgaaattgcaagactgagtggtggcattccgattcagataattgcaaatgataccatcgttttttaccgaggaagggaatatgtgcagcctgaaattatgtatcctattgatacactgtcgaaaaagagggcgttggaaaaatcaaaatacgagcaatcgctagagtctgtgagacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="7055" stop="10600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7355" g_stop="7488" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8539" g_stop="8940" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="536" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8941" i_stop="10249" i_length="1309">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10250" g_stop="10300" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="587" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E298313" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7355" e_stop="7488"/>
          <exon e_start="8539" e_stop="8940"/>
          <exon e_start="10250" e_stop="10300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGGGTAAGTTTGTTAGAGCTAATTTTCTATAATAACCAAGTCATTGCTTCTCATCATGCATTCATGCAAAATTCACTTTGTAAAGTCTCAATGTGTATAGCCCTTCTACCATAAACTTCTACTCATCGACACCAACTTCCACAATCATTCTTCTGCGGTTGACGCGCTACTTAGTCTATTTGCGTGGGTCCTACATTTTCTCAATTGACTTGTGCCAAAGATGTATGACATAGGTGTGTGTAGTTCTATGGATAATTTTATTCCTAATATTATCAAAAACTGCATGTACCGATATATGCACATTTTACCCCTATTGTAGCCGAATCCATGTTATGCAACGTATTGTTGACCTGGCTCATAGATGTAGTTAAGTTAATTATTAGGGTAGATCATCTGAAATCCACCTTAACAACCACTCTCCTACCGTTTTGTGACTTGTATTGTTGATTTGGCTCATAGATGTGGCTCAGTTGATAATTAGAGTAGATCATCTGAAATCCACCTCAACAACCACTCCCCTAAGTACCCAAAAGTGTGGCCTAGTGCTTAGTGGTCAATGAAAGTGGGTTGAGAACGATGAGGTCTCAAGTTCAAATCCTAGCATAGACAAAAACACTAGGTGATTTCTTCTCATCTGATCTAGCCTTGGTGGACGGAGTTACTTGATACTTGTTGCTGGTGGAAGGTGAAGTTAGTCGAGGTGCGTGAAAGCTGGCCCAGACACCACAATTATCTAAATAAAAACACTCTACTACCCTCTTGTGGCTTGTGTAATTCGCTCTACCTCACAAAAGAACAAGACCTTTCGTTGCACCTTATATACCCCATTGCACTTTGCAGTTTCGTCTTTTTCCATCGACCTTCTTTACTGCTTCAATCGTCAACATTATAGGAAAAAGATCTGTTGGTTTTTGCGATATGTTTGCACTATTTTAACCATCGATGGCTGTTTAGTTCGAAACTGAAACTAAATGTTATCAGCTTTTCATCATCATTCTTAGGAATATATACCAAAATGTCGTTTATTTCACTTGGAAAGATAACAAAGTATCTATCACTTTGTATTCAACAAAACATAGTAACGATCTTCCTTTTGCAAATGCTTTTGGATATTTAACTTACGATTTTTTCCCTCACAGACCTTTGGTAGTCTCATACGTGTTTCATGCTACTTTTTTTTGGAATCAGTTCACTGCACTGAAGGATTTGACTTGTAATACTGTTTGATTCTGTCATATTTACCTATATCTCTGTTTTATCTACTTCTGCATCAACCATGGTATGAATTACTAATCAAATTCTCTTTCTTCAGGCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTC</genome_strand>
        <mrna_strand>TGCAAAGGAAGAGGGAGAAGAAGAAGAGTATTGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAAAAGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541545" ref_strand="+" ref_description="SGN-E541545 [TUS-62-G8](-)">
      <seq>aaaaggggagtctttggaggtgttattcttaatatgcatctacattggaaaagacatgaaactgtcaaagtcatatgcaaaccctgcaaacctggtcagattcaagaatatgttgatgaaattgcaagactgagtggtggcattccgattcagataattgcaaatgataccatcgttttttaccgaggaagggaatatgtgcagcctgaaattatgtatcctattgatacactgtcgaagaagagggcgttggaaaaatcaaaatacgagcaatcgctagagtctgtgagacatttcattgccattgctgagaaggaacttgcactctactatagacatgttgccctatatgatgaaccaaatattcagagtgcttactccatccttgatgattcaacaagtacaagtgaaaaacgaaatgatgaaataggagaggagaactattcagcagacgaatctatttccttggatctcgagttaccacaagttgatgattattgctcggatgataaacaatctttaagcgaatttggatttgaggatactgatgaatcaagtagtgatgagttggattctggggaggaggaaactagtaattactgcggtagcatatggggaaattattgaatgttgagacttgaaataatgtggttttaattcttgatctgataaattgagggattggaatagaatagaattttttcaaattctaaatcttctgtttggttatcctgaaattggcacaaaaactagaacttgatttttaattttttaacccaagatagatcatatttcttatgtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="8395" stop="11109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8695" g_stop="8940" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8941" i_stop="10249" i_length="1309">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10250" g_stop="10806" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="803" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="813"/>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E541545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8695" e_stop="8940"/>
          <exon e_start="10250" e_stop="10806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGGGTAAGTTTGTTAGAGCTAATTTTCTATAATAACCAAGTCATTGCTTCTCATCATGCATTCATGCAAAATTCACTTTGTAAAGTCTCAATGTGTATAGCCCTTCTACCATAAACTTCTACTCATCGACACCAACTTCCACAATCATTCTTCTGCGGTTGACGCGCTACTTAGTCTATTTGCGTGGGTCCTACATTTTCTCAATTGACTTGTGCCAAAGATGTATGACATAGGTGTGTGTAGTTCTATGGATAATTTTATTCCTAATATTATCAAAAACTGCATGTACCGATATATGCACATTTTACCCCTATTGTAGCCGAATCCATGTTATGCAACGTATTGTTGACCTGGCTCATAGATGTAGTTAAGTTAATTATTAGGGTAGATCATCTGAAATCCACCTTAACAACCACTCTCCTACCGTTTTGTGACTTGTATTGTTGATTTGGCTCATAGATGTGGCTCAGTTGATAATTAGAGTAGATCATCTGAAATCCACCTCAACAACCACTCCCCTAAGTACCCAAAAGTGTGGCCTAGTGCTTAGTGGTCAATGAAAGTGGGTTGAGAACGATGAGGTCTCAAGTTCAAATCCTAGCATAGACAAAAACACTAGGTGATTTCTTCTCATCTGATCTAGCCTTGGTGGACGGAGTTACTTGATACTTGTTGCTGGTGGAAGGTGAAGTTAGTCGAGGTGCGTGAAAGCTGGCCCAGACACCACAATTATCTAAATAAAAACACTCTACTACCCTCTTGTGGCTTGTGTAATTCGCTCTACCTCACAAAAGAACAAGACCTTTCGTTGCACCTTATATACCCCATTGCACTTTGCAGTTTCGTCTTTTTCCATCGACCTTCTTTACTGCTTCAATCGTCAACATTATAGGAAAAAGATCTGTTGGTTTTTGCGATATGTTTGCACTATTTTAACCATCGATGGCTGTTTAGTTCGAAACTGAAACTAAATGTTATCAGCTTTTCATCATCATTCTTAGGAATATATACCAAAATGTCGTTTATTTCACTTGGAAAGATAACAAAGTATCTATCACTTTGTATTCAACAAAACATAGTAACGATCTTCCTTTTGCAAATGCTTTTGGATATTTAACTTACGATTTTTTCCCTCACAGACCTTTGGTAGTCTCATACGTGTTTCATGCTACTTTTTTTTGGAATCAGTTCACTGCACTGAAGGATTTGACTTGTAATACTGTTTGATTCTGTCATATTTACCTATATCTCTGTTTTATCTACTTCTGCATCAACCATGGTATGAATTACTAATCAAATTCTCTTTCTTCAGGCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</genome_strand>
        <mrna_strand>AAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419159" ref_strand="-" ref_description="SGN-E419159 [STM-29-G9]">
      <seq>atttcattgtcattgctgagaaggaacttgcactctactatagacatgttgccctatacgatgacccaaataatcggagttcttactccatccttgatgattcaagaagcacaagtgaaaaacgaaatgacgaaataggagaggagagctattcagcaggcgaatctatttcctcggatctcgagttacctcaaattgatgattattgttctgatgacaaacaatctttaagcgaatttgaatttgaggatactgacgaatcaagtagtgatgacttggattctggggaggaggaaactagtaattactgaggtagcatatggggaaatatttgaatattgagacctgaaatgatgtggttttaattcttgatctgataattgagggattggaatagaataggttttttcaaatctaattcttctgtttggttatgctgaaattggcacaaaaactagaacttgatctttaatttgtttaacccaatttcatgagctaattccctttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="9996" stop="11098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10296" g_stop="10784" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="522"/>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E419159" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10296" e_stop="10784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTT-TTTAACCCAAG</genome_strand>
        <mrna_strand>ATTTCATTGTCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATACGATGACCCAAATAATCGGAGTTCTTACTCCATCCTTGATGATTCAAGAAGCACAAGTGAAAAACGAAATGACGAAATAGGAGAGGAGAGCTATTCAGCAGGCGAATCTATTTCCTCGGATCTCGAGTTACCTCAAATTGATGATTATTGTTCTGATGACAAACAATCTTTAAGCGAATTTGAATTTGAGGATACTGACGAATCAAGTAGTGATGACTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGAGGTAGCATATGGGGAAATATTTGAATATTGAGACCTGAAATGATGTGGTTTTAATTCTTGATCTGAT-AATTGAGGGATTGGAATAGAATAG-GTTTTTTCAAA-TCTAATTCTTCTGTTTGGTTATGCTGAAATTGGCACAAAAACTAGAACTTGATCTTTAATTTGTTTAACCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296607" ref_strand="+" ref_description="SGN-E296607 [cLET-39-D16]">
      <seq>gttaagcagtgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11008" stop="13717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11308" g_stop="11479" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="258" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="341" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13417" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="438" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E296607" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11308" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGCAGTGATAAGGAGATATTTTT--AAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTG</genome_strand>
        <mrna_strand>GTTAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389781" ref_strand="+" ref_description="SGN-E389781 [TUS-4-E17]">
      <seq>taagcagtgataaggagatatttttcaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtaaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11011" stop="13891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11310" g_stop="11479" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="255" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="338" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13591" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="609" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E389781" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11310" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTGATAAGGAGATATTTTT-AAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGG</genome_strand>
        <mrna_strand>TAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTAAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227009" ref_strand="+" ref_description="SGN-E227009 [cLED-1-F6]">
      <seq>aaagcagtgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattgtcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11010" stop="13749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11310" g_stop="11479" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="256" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="339" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13449" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="468" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E227009" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11310" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTGATAAGGAGATATTTTT--AAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAA</genome_strand>
        <mrna_strand>AAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTGTCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717001" ref_strand="+" ref_description="SGN-E717001 [FB18CF05]">
      <seq>tgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaaaattgggagccgggggtgattcccaagaaagcgccgaccgccgccgcacggaaagatgaaaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcaaaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgaaaaagctggatgaaaatactgaaaatctgtcacatcaaaaggtacctactgaactgaaaaaagcgattatgcaagctcgacaggataaaaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgcaaaccttttaaacgtctacatcgtttgggttctaagggtggtcatgtacatgagccttttgaatgttctctttactaagtaagggggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcaaaaatggatgtgcttgctcttgctaaaaaaaaaaaaaaaaaaaaattcttggggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11017" stop="13959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11317" g_stop="11479" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="249" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="332" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13658" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="670" r_length="338" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="690"/>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E717001" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11317" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGGAGATATTTTT--AAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAG</genome_strand>
        <mrna_strand>TGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAAATTGGGAGCCGGGGGTGATTCCCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAAAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAAAAAGCTGGATGAAAATACTGAAAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAAAAAGCGATTATGCAAGCTCGACAGGATAAAAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGCAAACCTTTTAAACGTCTACATCGTTTGGGTTCTAAGGGTGGTCATGTACATGAGCCTTTTGAATGTTCTCTTTACTAAGTAAGGGGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCAAAAATGGATGTGCTTGCTCTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716994" ref_strand="+" ref_description="SGN-E716994 [FB18CE10]">
      <seq>tgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaaaattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgaaaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcaaaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgaaaaagctggatgaaaatactgaaaatctgtcacatcaaaaggtacctactgaactgaaaaaagcgattatgcaagctcgacaggataaaaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatctttcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtaaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttacccagaaagggggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcaaaaatggatgtgcttgctcttgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11017" stop="13959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11317" g_stop="11479" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="249" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="332" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13658" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="670" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="683"/>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E716994" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11317" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGGAGATATTTTT--AAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAG</genome_strand>
        <mrna_strand>TGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAAATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAAAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAAAAAGCTGGATGAAAATACTGAAAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAAAAAGCGATTATGCAAGCTCGACAGGATAAAAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCTTTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTAAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTACCCAGAAAGGGGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCAAAAATGGATGTGCTTGCTCTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336549" ref_strand="+" ref_description="SGN-E336549 [cTOE-4-E15]">
      <seq>tttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11028" stop="13772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11328" g_stop="11479" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="236" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="319" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13472" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="471" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E336549" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11328" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTG</genome_strand>
        <mrna_strand>TTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714665" ref_strand="+" ref_description="SGN-E714665 [FB12AD06]">
      <seq>ttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccgggggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgaaaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcaaaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgaaaaagctggatgaagatactgaaaatctgtcacatcaaaaggtacctactgaactgaaaaaagcgattatgcaagctcgacaggataaaaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatctttcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtaaaccttttgaacgtctacatcgtttgggttctaagtggggtcatgtacatgacccttttgaatgttttctttacccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaattctttggggggggggccgggacccctttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11031" stop="13936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11331" g_stop="11479" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="233" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="316" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13635" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="631" r_length="315" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="657"/>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E714665" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11331" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAA</genome_strand>
        <mrna_strand>TTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGGGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAAAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAAAAAGCTGGATGAAGATACTGAAAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAAAAAGCGATTATGCAAGCTCGACAGGATAAAAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCTTTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTAAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGGGGTCATGTACATGACCCTTTTGAATGTTTTCTTTACCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291198" ref_strand="+" ref_description="SGN-E291198 [cLET-2-E19]">
      <seq>tcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11035" stop="13771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11332" g_stop="11479" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="232" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="315" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13471" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="466" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E291198" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11332" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGT</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746567" ref_strand="-" ref_description="SGN-E746567 [GI|47104183]">
      <seq>caaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11035" stop="13959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11333" g_stop="11479" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="314" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13659" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="653" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E746567" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746567" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11333" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGA</genome_strand>
        <mrna_strand>CAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248206" ref_strand="+" ref_description="SGN-E248206 [cLEF-55-O2]">
      <seq>atggccggattgtcacaagattgggagggggtggtgattcgcaagaaagcgcctaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggttcctactagaactgaataaagcaatctttcaagattaccccgataagacacttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="11047" stop="13823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11347" g_stop="11479" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12657" g_stop="12740" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="217" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="0.807"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="0.78"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13321" g_stop="13523" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="504" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E248206" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11347" e_stop="11479"/>
          <exon e_start="12657" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACT-GAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTG</genome_strand>
        <mrna_strand>ATGGCCGGATTGTCACAAGATTGGGAGGGGGTGGTGATTCGCAAGAAAGCGCCTACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTTCCTACTAGAACTGAATAAAGCAATCTTTCAAGATTACCCCGATAAGACACTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711673" ref_strand="+" ref_description="SGN-E711673 [FB02CF05]">
      <seq>ccgtttgagtctagtagcacaacgttgaacacgagaaagctgcatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="12379" stop="13959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12674" g_stop="12740" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="150" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13321" g_stop="13669" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="499" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E711673" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12674" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGA</genome_strand>
        <mrna_strand>CCGTTTGAGTCTAGTAGCACAACGTTGAACACGAGAAAGCTGCATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389519" ref_strand="+" ref_description="SGN-E389519 [TUS-4-E17](-)">
      <seq>tggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctagatgtttaaggattgcaattaggacaattcagcaaatttgattatccagacatcttaatcttaatgaacatgattgttcacaagatataaagtttattttgccataccaacgtcctttgcatttaggaattgttaagttactaattcagattaaaagatgagaattggttaatgaccttaaaatagatcagttacattatgtaattgtatttctttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="12414" stop="14177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12714" g_stop="12740" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13103" g_stop="13185" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="110" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13321" g_stop="13877" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="667" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E389519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12714" e_stop="12740"/>
          <exon e_start="13103" e_stop="13185"/>
          <exon e_start="13321" e_stop="13877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</genome_strand>
        <mrna_strand>TGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="24294" stop="25548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24594" g_stop="25248" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24594" e_stop="25248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAT-ATTAATCAGGTTCTTGCTTATTTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGATTGACTACAAGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTTCTGTCTTCAAGGGTGCTGAATTTGAGGATGCTTATGATTTTTTGGTTGATTGTCATGAGCTGCTATATAAGATGTGCATAGTGAAACGATTTGGTGTTGATTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTCTCTAGCTTGTATATGGAGAAGTATATGCCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTCGAGCAAGGCAGGGTGTCGGTTACTGCGTATGAGGCTAAGTTTCGTGTATTATCTAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTATCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="26558" stop="25627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26259" g_stop="25928" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26259" e_stop="25928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTCCCAGGCTTGGCCAATGTCACAGTTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAAAATTACATCTAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCAGCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATTAGGAAGATAAATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAAACAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATC-AAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="25658" stop="26919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25958" g_stop="26619" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25958" e_stop="26619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATTTATCTTCCTAATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGCTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTAGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAACTGTGACATTGGCCAAGCCTGGGACAGATTTGTTAGTGTGGGAGGGTGACTACACTCCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCAAGATGTGTTTCCGGCAGACCTTCCTGGTATACCACCAGATAGAGATATTGATTTCTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAAGTTCAAAAGTTGTTAGGGAAAGGCTTTATTAGACCAAGTGCATCCTCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGA-CTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="28362" stop="27176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28062" g_stop="27476" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28062" e_stop="27476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="28362" stop="27176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28062" g_stop="27476" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28062" e_stop="27476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="28362" stop="27209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28062" g_stop="27509" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28062" e_stop="27509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="28807" stop="27666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28507" g_stop="27966" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28507" e_stop="27966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCATGCAATGTTCTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCCGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATATGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTAAGCAACAAAATCAACAATGTCACGTTTCATCCTACTCCACCAAAAATGTTGTTTTAGATCACGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATAC-CCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30799" stop="29572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30499" g_stop="29872" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30499" e_stop="29872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30741" stop="29597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30449" g_stop="29897" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30449" e_stop="29897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30839" stop="29602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30539" g_stop="29902" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30539" e_stop="29902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30799" stop="29624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30499" g_stop="29924" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30499" e_stop="29924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="31415" stop="30105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31115" g_stop="30405" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31115" e_stop="30405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACTTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="33275" stop="32126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32971" g_stop="32426" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32971" e_stop="32426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCTTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG--AA-ATAT--TTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="33174" stop="32193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32861" g_stop="32493" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32861" e_stop="32493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34575" stop="33205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34267" g_stop="33505" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34267" e_stop="33505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTATCTCATAA-TTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGCCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAAATTGAATATTTGACGGTAAAAGATCCACTTGAGTTGTGGACTGACTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCCCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTACAGCAACAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATTTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537994" ref_strand="+" ref_description="SGN-E537994 [TUS-56-O5](-)">
      <seq>aaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagacattggggtttctttgaaggtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaggttgatgaatcactaagagcagaggatgtagaggtatattatgatccaacggaactttttggtgaactactcaaaggaccaaaaatttctgaatctaatgttgagcaccactagtcatggtttattgattttatgaagtttttttttttatgttttttcataaaataaactttctctgtttggatcgcacaatattacaatacaatgttacaaagtttgtttggattgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="43385" stop="39536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43085" g_stop="42987" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42986" i_stop="41400" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41399" g_stop="41101" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="398" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41100" i_stop="40069" i_length="1032">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40068" g_stop="39828" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="639" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E537994" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43085" e_stop="42987"/>
          <exon e_start="41399" e_stop="41101"/>
          <exon e_start="40068" e_stop="39828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTATTTGAAGT</genome_strand>
        <mrna_strand>AAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339470" ref_strand="+" ref_description="SGN-E339470 [cTOF-4-H18]">
      <seq>aagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaaggactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagaacattgnggtttctttgaaggtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaggttgatgaatcactaagagcagaggatgtagaggtatattatgatccaacggaaactttttggtgaactactcaaaggaccaaaaatttctgaatctaatgttgagcaccacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="44049" stop="39656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43749" g_stop="43658" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43657" i_stop="43120" i_length="538">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43119" g_stop="42987" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="225" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42986" i_stop="41400" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41399" g_stop="41101" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="525" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41100" i_stop="40069" i_length="1032">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40068" g_stop="39956" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="639" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E339470" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43749" e_stop="43658"/>
          <exon e_start="43119" e_stop="42987"/>
          <exon e_start="41399" e_stop="41101"/>
          <exon e_start="40068" e_stop="39956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAG-ACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGG-AACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTA</genome_strand>
        <mrna_strand>AAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGAACATTGNGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537997" ref_strand="+" ref_description="SGN-E537997 [TUS-56-O5]">
      <seq>taaaaacttagaaatatggctagtgagaaggaaaaaattaaaattacaagtgataagtataggctattcttgcatgaagatcaagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaaggactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagacattggggtttctttgaaagtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaagttgatgaatcactaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="44131" stop="39752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43831" g_stop="43658" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43657" i_stop="43120" i_length="538">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43119" g_stop="42987" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="307" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42986" i_stop="41400" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41399" g_stop="41101" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="606" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41100" i_stop="40069" i_length="1032">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40068" g_stop="40052" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="623" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E537997" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43831" e_stop="43658"/>
          <exon e_start="43119" e_stop="42987"/>
          <exon e_start="41399" e_stop="41101"/>
          <exon e_start="40068" e_stop="40052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAG</genome_strand>
        <mrna_strand>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAAGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267847" ref_strand="+" ref_description="SGN-E267847 [cLEI-12-E10]">
      <seq>aaaaacttagaaatatggctagtgagaaggaaaaaattaaaattacaagtgataagtataggctattcttgcatgaagatcaagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaacgactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttacgacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagctttgccaagaagatttgcttgggaagtgatcagtgtatacacagggccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="44130" stop="40908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43830" g_stop="43658" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43657" i_stop="43120" i_length="538">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43119" g_stop="42987" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="306" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42986" i_stop="41400" i_length="1587">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41399" g_stop="41208" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="498" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E267847" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43830" e_stop="43658"/>
          <exon e_start="43119" e_stop="42987"/>
          <exon e_start="41399" e_stop="41208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCAC</genome_strand>
        <mrna_strand>AAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAACGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTACGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTGCCAAGAAGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574565" ref_strand="+" ref_description="SGN-E574565 [34053]">
      <seq>ttttagagagagaaaagtattaaaacttgaagtagttgaaatatggctggtgagaaggaaacaattaaagttgtaagtgataagtataggctattcttgcatgaagatcaagctgctgctgcaggaaccatccagtggagacatggtgatcctccaagctatgaaagtgttaataagctctttgaacaaggaaggaccaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacacaagactcgcataaaagactttaggacaattaatcctgaaaaattcaagctctttgtaaatggaagagatggattgtcagccgaagagacattaaaagtgggaagctacaatgcgctattgaagagttcaatgccagatgaattcaaatattacaaagcagatgaagagacctttgaatcatctcacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcaatgtatattcaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="44139" stop="40912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43820" g_stop="43658" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="201" r_length="163" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43657" i_stop="43120" i_length="538">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43119" g_stop="42987" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42986" i_stop="41400" i_length="1587">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41399" g_stop="41212" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="522" r_length="188" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E574565" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43820" e_stop="43658"/>
          <exon e_start="43119" e_stop="42987"/>
          <exon e_start="41399" e_stop="41212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGG</genome_strand>
        <mrna_strand>AAATATGGCTGGTGAGAAGGAAACAATTAAAGTTGTAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGCAGGAACCATCCAGTGGAGACATGGTGATCCTCCAAGCTATGAAAGTGTTAATAAGCTCTTTGAACAAGGAAGGACCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACACAAGACTCGCATAAAAGACTTTAGGACAATTAATCCTGAAAAATTCAAGCTCTTTGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATGGATTGTCAGCCGAAGAGACATTAAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAGATGAATTCAAATATTACAAAGCAGATGAAGAGACCTTTGAATCATCTCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAATGTATATTCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212356" ref_strand="+" ref_description="SGN-E212356 [cLEC-74-E22]">
      <seq>acaagctttgtatcttggtcgacactatcgccgtgcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagaactgaaggagtgggatcaatgccttctaatgctgggtgatgctaaagtggatgaacatggtaatattactgatacaagagagttcaacagcatgtacttggacaaggatggtgaagatcgtgaaataaatattttatcagcaatctgctttttgaggggcaaggcatatgaagcgttggagaatcgtgcacaggctcgactatggtataaagctgctatcaaggctgatcctttgtgttatgaggcattggaatgtctgatagagaatcacatgctcacttgtgatgaagagagaaccctgctctcatgtttgcagtttggtcctgaagatgggtggctttcttcattctattcttgtttgataaagaagtatgataaagaaaatgtggtggaagctaaatttagagagctggaacagagtggacctaatacaaagctttcggacaaatctgttttgtgtacgcttaaatccaactctgatcttttagcctgcaaagctgagtattatcatcaatgcggtgaatatcagaaatgctttgaactaacatctgaattgcttgaaaaggatccgttccaccctcagtgtaccctggtgcacttagcagcagcaatggagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="56460" stop="50542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56160" g_stop="56052" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56051" i_stop="54154" i_length="1898">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54153" g_stop="54019" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54018" i_stop="53914" i_length="105">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53913" g_stop="53840" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="318" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53839" i_stop="52850" i_length="990">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52849" g_stop="52810" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="358" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52809" i_stop="52535" i_length="275">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52534" g_stop="52489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="404" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52488" i_stop="51599" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51598" g_stop="51519" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="484" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51518" i_stop="51256" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51255" g_stop="51074" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="666" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51073" i_stop="50911" i_length="163">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50910" g_stop="50842" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="735" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E212356" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56160" e_stop="56052"/>
          <exon e_start="54153" e_stop="54019"/>
          <exon e_start="53913" e_stop="53840"/>
          <exon e_start="52849" e_stop="52810"/>
          <exon e_start="52534" e_stop="52489"/>
          <exon e_start="51598" e_stop="51519"/>
          <exon e_start="51255" e_stop="51074"/>
          <exon e_start="50910" e_stop="50842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATGGTTAGTGATAGTTTGGATATAAGACACTGATGTTCATAGACATAATTTTGGATTACAGATTTGGTCTTAACAACCTCCGTACCTCCACGAGGTAGGGGTAAGGTCTGCATACACTCTACCCTCCTAGATCCCACTTTTGTGATTTCACAAGGTATGTTGTTGTAGATTTGGTCTGAATTTCTTGTGGGTCACGGGAGAGATTTCTCGGTGCTATAGTTTTCTGTTTGGCTGGTAATCATGTTTTCACACTAGTTATGAGGGAGAAGAAATGATAGAAAGTATAGGAAGTGAGGCAAAATGACTTTCCACATTTAATTCGAACATAGTACGCCTTAGCAAAATCGAATAAGCAAAGAATGAAGAAGTTTAACAGTGTTATTTGGGTTCCTTGAGATAAAAGTGGTAAATACTCTAAACCACTTCTATCTCATCTTTTCTCTTCTAAAAAAAAGATAAAAGTGAGTTAGAGCATTTAAATTCCTTACATCTGATTTCTGGTAGTTTCTTAAACTGAAAAGAATAATTGGTGTTGAAGTAATTAACTTTTGACTATAGCCTATCATACGGATGAACCTTTTGTTTACAGACCCCATCCTTTCCCTCGCGTTGGCTCCTTCATTTGTTGTTTGTTAATACAATGAAGAAATTATTGGTTCCCCTTAATATAACTGTAGGAACAAATTATCCTCTTCTTTTGTCTTGTGTTCAGCATCTGTGATCATCAGTGATCTCATCTCCTTACCTCTCATTCCTTGCTTTCTTGTGCATAGAATTAGGTTAGAAAATGAATCTTGAAGATCCTATCTGATAAAGAGATGTATTCAGTCTCAAGTTAACTGTATTGCAAGAGATATCATTGAATCTGATGTTAAGGAATTACAATTCCATCATGTGCTGAGCTGTCTTTCCCTACTTCTTAATATTGATCTAGCAGTTAAATATTATCATCGTAAGGAGCTGACTTGTTATAACTCCGTGACACTTTCTTAGGTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAGGTATGTAAGTTTTGGTATTCTAGTCATTCTTCTTTAATTGATGGAAGTCTTTATCTAGGGGTTGGTTAGTATGTCTCTTGGTTTTTTCTCCTCCTTTGTTATGGCTAAGGAATTAGTCTTGTCAATTACTGTATTAGAGGCCAGATTTATATGGTAAAACTCTGGAAGATACTTAGTTATCTTATATTCATTTTCCTTATCGTAGAAGCATCATAGGTCCTTCATGCTTTCAATTCCATGACAATCTTATGAAATTTATCTATGCTCATTTTCAGGCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAGGTGAGAACCTTTGCTGTTTAAAGTGTATCTTCTTGGAACTATGAAATAGTACAAGCTAATTTGTAGAATCAAACTGTCTTAAAACAATGCAAGTACTTTTGGAGACCGTGTTTATTGTACTCTAAAAGTCCTTGGTGTGTGTTTTTATAAGTAATGAACATTCTCTTTCTTTTAACCAAACATTCTATAGCTGTTCAGTGCTGTTAAAGGCCCGTAATGTGCTCAAACTCTGAAGCTGTGCAGGGGCAGTTGGCTGCTTGTGTTGCTTAGGCAGTATCTATGTAGGCCCCAAGACTAAGGGATCCTCTTCACCACCTATAAGCTCGGTCTTGTAGGGAATAGAACTAAACAACATATATAACTGGAGAATACTCGTAAACCTCCTTGGCAAAGTGGTATATTAATTGATAAAGAAATGTTATATAAATATGTGAGTCATTAGAAATATAAAGTTGGAATTTTAGTAGGGAAGTAGCCACTGAGCCAATATTAGAAAACCAAACCCCCTCTTAGCATTAGAATCAGAAATTTTAAATAGTTTTCGGAACAATCGAAATGTTAAATATGCACTTAACTGTAGCTTCTCAAATTCCTTTGTCCTATAAGTATTACTCGTGCTATAGTTAATTTTTTCAGATCACATTTATAATTTTCATTTGTTTCTTTTGCACCTTTATTTACCATGGCCTGCTCTTTAATTGTGTTTTGCACTTAAAATCTTGTTGAATTTTGGCATTTTTTCTGCTTTTACCTTTTTTAATGCTATTTATTGTTGATACTATCATTGAAAACTGCCAATCTTTTAGATGATAGTATTATTGTGTTAATGTTATCTTTGTTAAAGGAATTATTATGAGAAATTGACCAATCCAGTTGCTAGTGAATTTCAGAGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAGGTAATCACTTCTTATAAGACTACATTTTATTCCATTTGATCTTCTTTATGGATCATAAACACTTAACTTTTAAGTTTCACCCAGTTGAAAAATAGAATATTGAATTTGGTACTTTATATTGATAACTAGACAGAAGCTGTACTTGAATTTTTACAGAAATGTTGAAGTGTTCTATTATTTGCGTAGAAAAATTTTAGTTTTATGTTTTGCTCATCCATTTACTCCTCAATGGAATAATTTTTTCCTTTTCCTGTGCTTCTCAGTATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGAGTAAGTTGGTAACCCACCAGAAAGGAAATTATGTCTTTTTATTCTTTTGCTAGATCTTATTGTATACTGATCACATGTATTTTGGTACCTACTTTACATCACTACATGAAATTTGGCAACTGTTTTCTTTTCCTCTTATACTTTGGTACATGATAAAATACAGATTGCTTGAAAAGGATCCGTTCCACCTCAAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</genome_strand>
        <mrna_strand>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAG...................................................................................................................................................................................................................................................................................GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAG.......................................................................................................................................................................................................................................................................TATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGA...................................................................................................................................................................ATTGCTTGAAAAGGATCCGTTCCACCCTCAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451735" ref_strand="+" ref_description="SGN-E451735 [cSTS-14-G5]">
      <seq>cgaggcccgcctcttctcttctgcccaaatctgattcccaaaaccttctcaattttgaattcaaaccttgaaccaatcaaagagaaattggtgtaccaaaccaatgagggaagatgaaattgagaggctaagaggtgtggtgagggattgtgtgagtaaacatttgtattcatcagctatcttctttgctgataaagtagctgcaattacttctgacccagctgatatatacatgcaagcacaagctttgtatcttggtcgacactatcgccgggcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagagctgaaggagtgggatcaatgtcttctaatgctgggtgatgctaaagtggatgaatatggaaatattactgatacaagagagtgcaacagcatgtacttagacaaggatggtgaagatcgtgaaataaatattttatcagcaatatgctttttgaggggcaaggcttatgaagcgttggagaatcgtgcacaggctcgactatggtataaagctgctatcaaggctgatccctttgtgttatgaggcattggaatgtctgatagagaatcacatgctcacttgtgatgaagagaaaaccctgctctcatgtttgcaatttggtcctgaaaatgggtggctctcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="56688" stop="51241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56395" g_stop="56052" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56051" i_stop="54154" i_length="1898">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54153" g_stop="54019" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="484" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54018" i_stop="53914" i_length="105">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53913" g_stop="53840" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="558" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53839" i_stop="52850" i_length="990">
            <donor d_prob="0.104" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52849" g_stop="52810" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="599" r_length="41" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52809" i_stop="52535" i_length="275">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52534" g_stop="52489" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="645" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52488" i_stop="51599" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51598" g_stop="51541" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="703" r_length="58" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E451735" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56395" e_stop="56052"/>
          <exon e_start="54153" e_stop="54019"/>
          <exon e_start="53913" e_stop="53840"/>
          <exon e_start="52849" e_stop="52810"/>
          <exon e_start="52534" e_stop="52489"/>
          <exon e_start="51598" e_stop="51541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCTCCCGCTCTTCTCTTCTCCCCCAAATTCTTCCCCAAAAC-T-CTCAATTTTGAATTCAAAG-TTGAA-CAATCGAAGAGAAATTTGTATA-CAAA-CAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTTGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCCGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATGGTTAGTGATAGTTTGGATATAAGACACTGATGTTCATAGACATAATTTTGGATTACAGATTTGGTCTTAACAACCTCCGTACCTCCACGAGGTAGGGGTAAGGTCTGCATACACTCTACCCTCCTAGATCCCACTTTTGTGATTTCACAAGGTATGTTGTTGTAGATTTGGTCTGAATTTCTTGTGGGTCACGGGAGAGATTTCTCGGTGCTATAGTTTTCTGTTTGGCTGGTAATCATGTTTTCACACTAGTTATGAGGGAGAAGAAATGATAGAAAGTATAGGAAGTGAGGCAAAATGACTTTCCACATTTAATTCGAACATAGTACGCCTTAGCAAAATCGAATAAGCAAAGAATGAAGAAGTTTAACAGTGTTATTTGGGTTCCTTGAGATAAAAGTGGTAAATACTCTAAACCACTTCTATCTCATCTTTTCTCTTCTAAAAAAAAGATAAAAGTGAGTTAGAGCATTTAAATTCCTTACATCTGATTTCTGGTAGTTTCTTAAACTGAAAAGAATAATTGGTGTTGAAGTAATTAACTTTTGACTATAGCCTATCATACGGATGAACCTTTTGTTTACAGACCCCATCCTTTCCCTCGCGTTGGCTCCTTCATTTGTTGTTTGTTAATACAATGAAGAAATTATTGGTTCCCCTTAATATAACTGTAGGAACAAATTATCCTCTTCTTTTGTCTTGTGTTCAGCATCTGTGATCATCAGTGATCTCATCTCCTTACCTCTCATTCCTTGCTTTCTTGTGCATAGAATTAGGTTAGAAAATGAATCTTGAAGATCCTATCTGATAAAGAGATGTATTCAGTCTCAAGTTAACTGTATTGCAAGAGATATCATTGAATCTGATGTTAAGGAATTACAATTCCATCATGTGCTGAGCTGTCTTTCCCTACTTCTTAATATTGATCTAGCAGTTAAATATTATCATCGTAAGGAGCTGACTTGTTATAACTCCGTGACACTTTCTTAGGTATAAAGCTGCTATCAAGGCTGAT-CCTTTGTGTTATGAGGTATGTAAGTTTTGGTATTCTAGTCATTCTTCTTTAATTGATGGAAGTCTTTATCTAGGGGTTGGTTAGTATGTCTCTTGGTTTTTTCTCCTCCTTTGTTATGGCTAAGGAATTAGTCTTGTCAATTACTGTATTAGAGGCCAGATTTATATGGTAAAACTCTGGAAGATACTTAGTTATCTTATATTCATTTTCCTTATCGTAGAAGCATCATAGGTCCTTCATGCTTTCAATTCCATGACAATCTTATGAAATTTATCTATGCTCATTTTCAGGCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAGGTGAGAACCTTTGCTGTTTAAAGTGTATCTTCTTGGAACTATGAAATAGTACAAGCTAATTTGTAGAATCAAACTGTCTTAAAACAATGCAAGTACTTTTGGAGACCGTGTTTATTGTACTCTAAAAGTCCTTGGTGTGTGTTTTTATAAGTAATGAACATTCTCTTTCTTTTAACCAAACATTCTATAGCTGTTCAGTGCTGTTAAAGGCCCGTAATGTGCTCAAACTCTGAAGCTGTGCAGGGGCAGTTGGCTGCTTGTGTTGCTTAGGCAGTATCTATGTAGGCCCCAAGACTAAGGGATCCTCTTCACCACCTATAAGCTCGGTCTTGTAGGGAATAGAACTAAACAACATATATAACTGGAGAATACTCGTAAACCTCCTTGGCAAAGTGGTATATTAATTGATAAAGAAATGTTATATAAATATGTGAGTCATTAGAAATATAAAGTTGGAATTTTAGTAGGGAAGTAGCCACTGAGCCAATATTAGAAAACCAAACCCCCTCTTAGCATTAGAATCAGAAATTTTAAATAGTTTTCGGAACAATCGAAATGTTAAATATGCACTTAACTGTAGCTTCTCAAATTCCTTTGTCCTATAAGTATTACTCGTGCTATAGTTAATTTTTTCAGATCACATTTATAATTTTCATTTGTTTCTTTTGCACCTTTATTTACCATGGCCTGCTCTTTAATTGTGTTTTGCACTTAAAATCTTGTTGAATTTTGGCATTTTTTCTGCTTTTACCTTTTTTAATGCTATTTATTGTTGATACTATCATTGAAAACTGCCAATCTTTTAGATGATAGTATTATTGTGTTAATGTTATCTTTGTTAAAGGAATTATTATGAGAAATTGACCAATCCAGTTGCTAGTGAATTTCAGAGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATT</genome_strand>
        <mrna_strand>CGAGGC-CCGCCTCTTCTCTTCTGCCCAAATCTGATTCCCAAAACCTTCTCAATTTTGAATTCAAACCTTGAACCAATCAAAGAGAAATTGGTGTACCAAACCAATGAGGGAAGATGAAATTGAGAGGCTAAGAGGTGTGGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCTGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGGGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCTGAAGGAGTGGGATCAATGTCTTCTAATGCTGGGTGATGCTAAAGTGGATGAATATGGAAATATTACTGATACAAGAGAGTGCAACAGCATGTACTTAGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATATGCTTTTTGAGGGGCAAGGCTTATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCTGCTATCAAGGCTGATCCCTTTGTGTTATGAG...................................................................................................................................................................................................................................................................................GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAACCCTGCTCTCATGTTTGCAATTTGGTCCTGAAAATGGGTGGCTCTCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424118" ref_strand="+" ref_description="SGN-E424118 [STM-43-G3]">
      <seq>ccgctcttctcttctgcccaaatctgattcccaaaactctcaattttgaattcaaacttgaacaatcaaagagaaattggtgtacaaacaatgagggaagaagaaattgagaggctaagaggtgtggtgagggattgtgtgagtaaacatttgtattcatcagctatcttctttgctgataaagtagctgcaattacttctgacccagctgatatatacatgcaagcacaagctttgtatcttggtcgacactatcgccgggcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagagctgaaggagtgggatcaatgtcttctaatgctgggtgatgctaaagtggatgaatatggaaatattactgatacaagagagtgcaacagcatgtacttagacaaggatggtgaagatcgtgaaataaatattttatcagcaatatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="56687" stop="53717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56387" g_stop="56052" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56051" i_stop="54154" i_length="1898">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54153" g_stop="54019" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="471" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54018" i_stop="53914" i_length="105">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53913" g_stop="53892" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="493" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E424118" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56387" e_stop="56052"/>
          <exon e_start="54153" e_stop="54019"/>
          <exon e_start="53913" e_stop="53892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTCTTCTCTTCTCCCCCAAATTCTTCCCCAAAACTCTCAATTTTGAATTCAAAGTTGAACAATCGAAGAGAAATTTGTATACAAACAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTTGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCCGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTT</genome_strand>
        <mrna_strand>CCGCTCTTCTCTTCTGCCCAAATCTGATTCCCAAAACTCTCAATTTTGAATTCAAACTTGAACAATCAAAGAGAAATTGGTGTACAAACAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTGGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCTGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGGGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCTGAAGGAGTGGGATCAATGTCTTCTAATGCTGGGTGATGCTAAAGTGGATGAATATGGAAATATTACTGATACAAGAGAGTGCAACAGCATGTACTTAGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341676" ref_strand="+" ref_description="SGN-E341676 [cTOF-9-A17]">
      <seq>ttcctttgaacaatttaggaatgccgaaaatggagaaagtgaaaaaggtatcactctttcagtctctcttctctacttcgccagcaaaaagatgctaaaatcgcccttcaactcttccttaatcctaatcccagccatggaagcgacaaaactactaaaccttttcgttattctccactctgttatgatctcatcatctgcaagctcggcagaggtaaactctttcaagaaatggaaaaaatcatcgataaattgagacaggacactcgagtttctctcaacgaagttgttttctgcaatgttatttctttttatggaagagcacatttacctgataaggctcttcatatgtttaatgaaataccctcttttcgctgctatagaagtataaaatctgttaatagcttgttgaatgcacttttagcttgtaaagaatacagcaagattggtgaaatgttaaacaactttgaaaattacgcaaccccagatgtttgtacgtttaatatattgatgaatgcgtgttgtttgtgtggtgatttggggtggtgcacgggaggtgtttgatgaaatgtgtgagagaagaattcagccaaatgtggtgactttggggacgttgattaatgggcttttgtgtgaatcgagaaattaacgaggcgtttaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="+" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="56978" stop="58239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57278" g_stop="57939" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="+" ref_id="SGN-E341676" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57278" e_stop="57939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGAACAATTTAGGAATG-CGAAAATGGAGAAAGTGAAAAAGGTATCA-TCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTT-GGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAGGAATTCAGCCAAATGTGGTGACTTTTGGGACGTTGATTAATGGGC-TTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</genome_strand>
        <mrna_strand>TTCCTTTGAACAATTTAGGAATGCCGAAAATGGAGAAAGTGAAAAAGGTATCACTCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTTGGGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAAGAATTCAGCCAAATGTGGTGACTTTGGGGACGTTGATTAATGGGCTTTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618839" ref_strand="+" ref_description="SGN-E618839 [69522]">
      <seq>ctgctatgaaaataactgtcttgctcgagctctctttggccgtgacgaccagaggttgaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtacaccgagatataaagtgtaccaatgtgcttcttgataaggatctgaacgctaagatttcagattttggattggctaaattagatgaagaagagaacactcatattagcacccgaattgctggaacagtaggttatatggctccggagtatgcaatgagaggctacttgacagataaagctgatgtttatagctttggagttgttttattagagattgtcagtgggaaaagcaacacaaactacaggccaaaagaggaatttgtttaccttcttgactgggcttatgtcctacaagaacagggaaatctgttagaactagtggatccatgtctcggtacccattactccaaaaaagaggcaatgcggatgataaatatttctcttttgtgcacaaatccctctcctactctccgaccatccatgtcttcagtagtgagtatgctcgaaggaaaactccccgtgcaagcaaccaataatcaagctcactacatcagacgatgaaatgagatttaaatcgtttgagaaactttcacatgaccagtcaaaacaacacaaagtatcaaacatactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="70128" stop="68510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69829" g_stop="69792" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69791" i_stop="69707" i_length="85">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69706" g_stop="69469" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="276" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69468" i_stop="69341" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69340" g_stop="69190" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="427" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69189" i_stop="69099" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69098" g_stop="68810" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="721" r_length="294" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E618839" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69829" e_stop="69792"/>
          <exon e_start="69706" e_stop="69469"/>
          <exon e_start="69340" e_stop="69190"/>
          <exon e_start="69098" e_stop="68810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGTGTAAGCCTTCTTATCATAACTGTCTCTGTACTATCATGTGATGAGAGAGTTACAGTTCTGTGCGTTTAAATTTGTTCACTACTATGGTTACTTTGAAGTATCTTACGTTTCGTTTTCTTTTCTTGAAGAGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGGGTAAACTACCTTCTCTACTTTCTTAAACTCTGTATACGTTAGAACTAGACAAACAAATTGAAACGAAGGGAGCATTTGCTTTGTTATGCAGGCTTACGTCCTACAAGAACAGGGAAATCTGTTAGAACTAGTTGATCCACGTCTCGGTACCAATTACTCCAAAAAAGAGGCAATGCGGATGATAAACGTGTCTCTTTTGTGCACGAATCCCTCTCCTACTCTCCGACCATCCATGTCTTCTGTAGTGAGTATGCTCGAAGGAAAACTCCCCGTGCAAGC-ACCAATAATCAAACGTACTACATCAGACGATGAAATGAGATTTAAATCGTTCGAGAAGCTTTCACATGA-CAGTC-AAACAACAC-AAGTATC-AACATACTCTC</genome_strand>
        <mrna_strand>CTGCTATGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGACCAGAGGTTGAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTACACCGAGATATAAAGTGTACCAATGTGCTTCTTGATAAGGATCTGAACGCTAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT................................................................................................................................AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCAAAAGAGGAATTTGTTTACCTTCTTGACTGG...........................................................................................GCTTATGTCCTACAAGAACAGGGAAATCTGTTAGAACTAGTGGATCCATGTCTCGGTACCCATTACTCCAAAAAAGAGGCAATGCGGATGATAAATATTTCTCTTTTGTGCACAAATCCCTCTCCTACTCTCCGACCATCCATGTCTTCAGTAGTGAGTATGCTCGAAGGAAAACTCCCCGTGCAAGCAACCAATAATCAAGCTCACTACATCAGACGATGAAATGAGATTTAAATCGTTTGAGAAACTTTCACATGACCAGTCAAAACAACACAAAGTATCAAACATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434323" ref_strand="+" ref_description="SGN-E434323 [STM-59-D8]">
      <seq>ataacttcgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggagtactcgctgatggtgccatcatagctgttaagcagctgtcttccaagtcgaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgaccagaggttgaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtacaccgagatataaagtgtaccaatgtgcttcttgataaggatctgaacgctaagatttcagattttggattggctaaattagatgaagaagagaacactcatattagcacccgaattgctggaacagtaggttatatggctccggagtatgcaatgagaggctacttgacagataaagctgatgtttatagcttttggagttgttttattagagattgtcagtgggaaaagcaacacaaactacaggccaaaagaggaatttgtttaccttcttgactgggcttatgtcctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="70536" stop="68877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70236" g_stop="70181" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70002" g_stop="69792" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="267" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69791" i_stop="69707" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69706" g_stop="69469" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="505" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69468" i_stop="69341" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69340" g_stop="69190" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="657" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69189" i_stop="69099" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69098" g_stop="69085" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="671" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E434323" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70236" e_stop="70181"/>
          <exon e_start="70002" e_stop="69792"/>
          <exon e_start="69706" e_stop="69469"/>
          <exon e_start="69340" e_stop="69190"/>
          <exon e_start="69098" e_stop="69085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGTGTAAGCCTTCTTATCATAACTGTCTCTGTACTATCATGTGATGAGAGAGTTACAGTTCTGTGCGTTTAAATTTGTTCACTACTATGGTTACTTTGAAGTATCTTACGTTTCGTTTTCTTTTCTTGAAGAGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGC-TTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGGGTAAACTACCTTCTCTACTTTCTTAAACTCTGTATACGTTAGAACTAGACAAACAAATTGAAACGAAGGGAGCATTTGCTTTGTTATGCAGGCTTACGTCCTACA</genome_strand>
        <mrna_strand>ATAACTTCGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGAGTACTCGCTGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCGAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGACCAGAGGTTGAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTACACCGAGATATAAAGTGTACCAATGTGCTTCTTGATAAGGATCTGAACGCTAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT................................................................................................................................AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCAAAAGAGGAATTTGTTTACCTTCTTGACTGG...........................................................................................GCTTATGTCCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410502" ref_strand="+" ref_description="SGN-E410502 [PPI-17-A6]">
      <seq>ataacttcgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggagtactcgctgatggtgccatcatagctgttaagcagctgtcttccaagtcgaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgaccagaggttgaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtacaccgagatataaagtgtaccaatgtgcttcttgataaggatctgaacgctaagatttcagattttggattggctaaattagatgaagaagagaacactcatattagcacccgaattgctggaacagtaggttatatggctccggagtatgcaatgagaggctacttgacagataaagctgatgtttatagcttttggagttgttttatttagagattgtcagtgggaaaagcaacacaaactacaggcccaaagaggaatttgtttaccttcttgactgggcttatgtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="70536" stop="68879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70236" g_stop="70181" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70002" g_stop="69792" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="267" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69791" i_stop="69707" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69706" g_stop="69469" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="505" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69468" i_stop="69341" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69340" g_stop="69190" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="658" r_length="153" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69189" i_stop="69099" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69098" g_stop="69087" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="670" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E410502" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70236" e_stop="70181"/>
          <exon e_start="70002" e_stop="69792"/>
          <exon e_start="69706" e_stop="69469"/>
          <exon e_start="69340" e_stop="69190"/>
          <exon e_start="69098" e_stop="69087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGTGTAAGCCTTCTTATCATAACTGTCTCTGTACTATCATGTGATGAGAGAGTTACAGTTCTGTGCGTTTAAATTTGTTCACTACTATGGTTACTTTGAAGTATCTTACGTTTCGTTTTCTTTTCTTGAAGAGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGC-TTTGGAGTTGTTTTA-TTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGGGTAAACTACCTTCTCTACTTTCTTAAACTCTGTATACGTTAGAACTAGACAAACAAATTGAAACGAAGGGAGCATTTGCTTTGTTATGCAGGCTTACGTCCTA</genome_strand>
        <mrna_strand>ATAACTTCGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGAGTACTCGCTGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCGAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGACCAGAGGTTGAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTACACCGAGATATAAAGTGTACCAATGTGCTTCTTGATAAGGATCTGAACGCTAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT................................................................................................................................AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTTGGAGTTGTTTTATTTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCCAAAGAGGAATTTGTTTACCTTCTTGACTGG...........................................................................................GCTTATGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214137" ref_strand="+" ref_description="SGN-E214137 [cLEC-80-J16]">
      <seq>ggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgatcagagattaaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtccatagagatataaagtgtacgaatgtgcttctttgataggatctgaacgcgaagatttcagattttggattggctaaattagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="71049" stop="69211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70749" g_stop="70629" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70628" i_stop="70300" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70299" g_stop="70181" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="240" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70002" g_stop="69792" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="451" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69791" i_stop="69707" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69706" g_stop="69511" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="647" r_length="196" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E214137" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70749" e_stop="70629"/>
          <exon e_start="70299" e_stop="70181"/>
          <exon e_start="70002" e_stop="69792"/>
          <exon e_start="69706" e_stop="69511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</genome_strand>
        <mrna_strand>GGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTTGATAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348646" ref_strand="+" ref_description="SGN-E348646 [cTOF-30-B21]">
      <seq>gctaacggtgttgggaaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagcntttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgatcagagattaaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="71309" stop="69326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71009" g_stop="70853" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70852" i_stop="70773" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70772" g_stop="70629" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="301" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70628" i_stop="70300" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70299" g_stop="70181" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="419" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70002" g_stop="69792" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="631" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69791" i_stop="69707" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69706" g_stop="69626" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="712" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E348646" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71009" e_stop="70853"/>
          <exon e_start="70772" e_stop="70629"/>
          <exon e_start="70299" e_stop="70181"/>
          <exon e_start="70002" e_stop="69792"/>
          <exon e_start="69706" e_stop="69626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGC-TTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACC</genome_strand>
        <mrna_strand>GCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAG-TTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCNTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248305" ref_strand="+" ref_description="SGN-E248305 [cLEG-1-G11]">
      <seq>aaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="71294" stop="69494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70994" g_stop="70853" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70852" i_stop="70773" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70772" g_stop="70629" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="286" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70628" i_stop="70300" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70299" g_stop="70181" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="405" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70002" g_stop="69794" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="614" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E248305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70994" e_stop="70853"/>
          <exon e_start="70772" e_stop="70629"/>
          <exon e_start="70299" e_stop="70181"/>
          <exon e_start="70002" e_stop="69794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTT</genome_strand>
        <mrna_strand>AAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558112" ref_strand="+" ref_description="SGN-E558112 [17017]">
      <seq>aaatattatgggctttgcctactaggaggtagctacagagtgcggcttcactttgctgaaataatgttttctaatgactcaacatatagcagccttggaaggcggatatttgatgtagcaattcaagggagagtagttttgaaggatttcaatatcatggaggaagctaacggtgttggagaagtcattatcaaggactttgatgatattactgttagtagcactctggagattcacttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggacctctgatttcagctatctcagtgacaccaaacttcaaaacaggtcgcaggttacctgtcggagctgttattggcattgtactcgcttcaattgtggtggttctgatagttttattttctctgtggaagaaaggcatttttggagggaaaattaatcaagaagaattagaactcagagcccttggatttacaaacaggtcattttagacttagacaaattaaagctgctacaaataacttttgatcctgggcaacaaaattggtgaaggagggtttggaccagtttaccaaggtgtcctcaccgatgggcagtcatagctgttaagcagtctccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="71614" stop="69656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71314" g_stop="71189" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71188" i_stop="71049" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71048" g_stop="70853" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="322" r_length="196" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70852" i_stop="70773" i_length="80">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70772" g_stop="70629" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="460" r_length="138" r_score="0.861"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70628" i_stop="70300" i_length="329">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70299" g_stop="70181" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="582" r_length="122" r_score="0.916"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70002" g_stop="69956" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="628" r_length="46" r_score="0.809"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E558112" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71314" e_stop="71189"/>
          <exon e_start="71048" e_stop="70853"/>
          <exon e_start="70772" e_stop="70629"/>
          <exon e_start="70299" e_stop="70181"/>
          <exon e_start="70002" e_stop="69956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAAGTAAGTTTGAGGCCTAACTTCTTTTGTAAATAATATGTAATCTAGAAAGTTGATTTATTTAGTTCTGATATGATCGGCAGCTTTCCAATTTAATATTTAAGGTACCAATTTTAATGTGGTATATTTTGATTTCTTACCAGGGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTT-GATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAAC-TTTGATCCT-GCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTC</genome_strand>
        <mrna_strand>AAATATTATGGGCTTTGCCTACTAGGAGGTAGCTACAGAGTGCGGCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATTCAA............................................................................................................................................GGGAGAGTAGTTTTGAAGGATTTCAATATCATGGAGGAAGCTAACGGTGTTGGAGAAGTCATTATCAAGGACTTTGATGATATTACTGTTAGTAGCACTCTGGAGATTCACTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCTCTGATTTCAGCTATCTCAGTGACACCAA................................................................................ACTTCA-A----A-ACAGGTCGCAGGTTACCTGTCGGAGCTGTTATTGGCATTGTACTCGCTTCAATTGTGGTGGTTCTGATAGTTTTATTTTCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAATTAATCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACAAATAACTTTTGATCCTGGGCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACCAA..................................................................................................................................................................................GGTGTCCTCACCGATGG-GCAGTCATAGCTGTTAAGCAGTCTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339727" ref_strand="+" ref_description="SGN-E339727 [cTOE-16-M14]">
      <seq>tccgtcatatttttcttcgccctctgacagatgggctttcagcagttcaggagtgtacgtgggtcttcaagctgccagttatattgcatcaaatacattttcactggatgtgtccggtcctgacttctacaatacagcacgccttgcccctaattccctcaaatattatgggctttgcctacaaggaggtagctacagagtgcgccttcactttgctgaaataatgttttctaatgactcaacatatagcagccttggaaggcggatatttgatgtagcaatacaagggagagtagttttgagggatttcaacattatggaggaagctaacggtgttgggaaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="71774" stop="69963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71474" g_stop="71189" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71188" i_stop="71049" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71048" g_stop="70853" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="482" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70852" i_stop="70773" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70772" g_stop="70629" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="626" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70628" i_stop="70300" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70299" g_stop="70263" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="663" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E339727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71474" e_stop="71189"/>
          <exon e_start="71048" e_stop="70853"/>
          <exon e_start="70772" e_stop="70629"/>
          <exon e_start="70299" e_stop="70263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAAGTAAGTTTGAGGCCTAACTTCTTTTGTAAATAATATGTAATCTAGAAAGTTGATTTATTTAGTTCTGATATGATCGGCAGCTTTCCAATTTAATATTTAAGGTACCAATTTTAATGTGGTATATTTTGATTTCTTACCAGGGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAG</genome_strand>
        <mrna_strand>TCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAA............................................................................................................................................GGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365538" ref_strand="+" ref_description="SGN-E365538 [cLPT-12-O15]">
      <seq>tttgataacatgtttcttggtaacaatgcattaagcggagcaattcccagctggatgtttagtaaaagagagaacatggatatgtcatacaacaatttcacacaaatatctactccagtatgcgattcctctaccttaaacttagctgccagctactccgatacaatgaacaacaccacggatgcctggtgttctatgaaacccctcatttgtcccacagacacgaaatatacttcactattcataaactgtggaggacctagaacttcatttgagggaaataattatgaggcagacacgaccaatagaggtccgtcatatttttcttcgccctccgacagatgggctttcagcagttcacgagtgtacgtgggtcttcaagctgccagctatattgcatcaaatacattttcactggatgtgtccggtcctgacttctacaatacagcacgccttgcccctaattccctcaaatattatgggctttgcctacaaggaggtagctacagagtgcgccttcactttgctgaaataatgttttctaatgactcaacatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="72667" stop="70926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72485" g_stop="72475" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72474" i_stop="72366" i_length="109">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72365" g_stop="72300" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72299" i_stop="72103" i_length="197">
            <donor d_prob="0.288" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72102" g_stop="72043" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72042" i_stop="71930" i_length="113">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71929" g_stop="71888" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="179" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71887" i_stop="71791" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71790" g_stop="71741" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="229" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71740" i_stop="71557" i_length="184">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71556" g_stop="71226" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="560" r_length="331" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E365538" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72485" e_stop="72475"/>
          <exon e_start="72365" e_stop="72300"/>
          <exon e_start="72102" e_stop="72043"/>
          <exon e_start="71929" e_stop="71888"/>
          <exon e_start="71790" e_stop="71741"/>
          <exon e_start="71556" e_stop="71226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAACATGTAGGTACCGTGCAGTGAAACCTTTACAAGTTGAAGCATAAATCTTGTACATTCTTTTCTCAAAGTTTTCATTCGGTTATAACAAGCAAAAGTTTTATCCGCGATGTAGGTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACATGTTGGTATTTGCTCAATTTGTTCCGATTTCCTCGTCTTAGTAGTAAACTTTGGTTATTATCACAGTTAGCTCCCAAACAAAAATGCCACACTTCAAAGCTAAAGTTTGCCCCCGAAACTTTTGTTTGCTGCAAGGACGCATTTACAAGAATTTGATGCCTTCTATGTGCATGACAACTATAATCTTATTTTATGCAGGGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTTGTGAGCATTGTTCCTCTTTGTTTCGAAACTACATTCATATATTATTTCTTTTTTTATAAGTGAAAATTTTGGTCCTTTAACTACATAACTTACAAACCTTCCTTCTTCAACAGAAACTTAGCTGCTAGCTACTCCGATACAATGAACAACACCACGTAAGTCCTCCGAAATGTTGTCTTATGCATCAACTGCTTGTTTGTTTGATGCATCAACTGTCTATAGTTGTGTGGATTAACTTATTTGAAATTGCAGGGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAATGTAAGAGTTACAGCCTATAAACCTTTTTATTTTATACTCGGAGATTCTTAGCTTGGCCATTGAGATGGCCTGAATTAGCAGTTTGTCAAAGGACCTCACCACTGAAGTACAAAAGCATAGCCTTGGAGTTGATGTATAATTTCACAACCCTTCCTTATGTTTATGCTCTTTATGTCAATTGCAGATACTTCACTATTCATAAACTGCGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAG</genome_strand>
        <mrna_strand>TTTGATAACAT.............................................................................................................GTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACAT.....................................................................................................................................................................................................GGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTT.................................................................................................................AAACTTAGCTGCCAGCTACTCCGATACAATGAACAACACCAC.................................................................................................GGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAAT........................................................................................................................................................................................ATACTTCACTATTCATAAACTGTGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCCGACAGATGGGCTTTCAGCAGTTCACGAGTGTACGTGGGTCTTCAAGCTGCCAGCTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579710" ref_strand="+" ref_description="SGN-E579710 [86842]">
      <seq>ctcttatctcctccctttttctccattcccgcctttcatttcaaggcttcaacaactataactcattcttcattaatgcattcgggattaacaacttgaaattgaatttcttcgtctgagcaataatggatactacttgtatcagattttgtgctttatttctctttctatatttgctttctacattgagatctgttgacgctcaactttggccagaagatgaagtacaagttctgcaaacaatatcatcgaaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0020C08-OC9Ft/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0020C08.3" temp_strand="-" temp_description="C12HBa0020C08.3  AC217430.3 htgs_phase:2 submitted_to_sgn_as:gi|239799562|gb|AC217430.3| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-20C8, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78179" stop="75054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77879" g_stop="77803" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77802" i_stop="77712" i_length="91">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77711" g_stop="77561" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="225" r_length="147" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77560" i_stop="75389" i_length="2172">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75388" g_stop="75355" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="259" r_length="34" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0020C08.3" gen_strand="-" ref_id="SGN-E579710" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0020C08.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77879" e_stop="77803"/>
          <exon e_start="77711" e_stop="77561"/>
          <exon e_start="75388" e_stop="75355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATCTCCTCCC-TTTTCTCCATTCCCGCCTTTCATTTCAAGGCTTCAACAACTTGAACACATTCTTCATTAATTGTTGGTAATTTCTACCATCTGATTTTCATTTCATTTTTATGTTTTATAAATTTAACTAACAAAATTGTTCGTCCTTTTTTCTTTTATACAGCATTCGAGACTACACAACTTGAAAAAATTGAATTTCTTCGACTGAACAATAATGGATGCTACTTGTATCAGATTTTGTGTTATATTTCTCTTTCTATATCTGCTTTCTACATTCAGATCTGTTGACGCTCAACTTTTGCCAGAAGATGAAGGTAGTTATCATTTTCTCTTCTTTTTACAGTTTCTACTAATTAGTATTGATTTTTTTCCCCTCTCTTCCTCTTTTTGATTTCCTATCGGTATTCGATTTCAATTTTCTTCGAATAAATAATAATTATTGTTAGTTAGTTGAATGATCGATGAATTAATTCCGTATTGATCTGTGATTTTATTTGTGAAATCTGATTTTTTTGGTTCTTGTTCTTTTCTGTTCCTGGGTTTGCATAGTGTGTTTACTTTTTTCTAATTTTGGGATCTGAGAAGTAGAACTTTTCTTCATAATTTCCTGTTGCTGATTGCTTCGTAGTATCCATGTCAGCTTTTTTGTTTCTTAATAATAATTCTGTAATATTTTTTATTTTTTTGGTTTATTTGGCTTTTGCTTTTTTGAAAAAATGCATAAGTAGCGCTTGACTATGACTTATATACTAGACACATCTCAATTGTTTTGAGTCAGGGAGGGTGTTACATAAGACAAAAAATGCACAAAATTACAGAAAAAAAAAGTTTTATGATGTAATAGGATTTTAGTTTAGTCGAAATGTATCTCTAGAATTTTGAACGCAGTATAAGAGGATATTTACGCATTTTTTCTTTTAATATGCTAATTTCAATACTAACTAACGATGGATAAAATTAAAATAACATTCTGAATATAATTTAAAACATGGAACAATTAAATTAATTTGATACGAAGGCAATAGTATCTTGCAGTTACTTTTTTGGTAAGAGTAAAAAATAAACTTAAAAAATATCTGTTTTAGGATAAATATAATATTAATTCAACGACTGTACGAAAAATTGACTTTTGTGTATATATTTGTTTGTGTTCGTTGATTTTTCAACATTACTAAATGGTTAACATCAAATTAGTACATAAAGTAGTGTTGCGTTATGAAAAGAAATTCCTTTTTAAACTTTTTTTTTTCAATTATTGATCTTTATATTAGTGTATGTTCTATGTGCTATGAAAATGAACTTTTTTTTTTAAATGACTTGTTAAAAATTGTTTGATAGAGTATATTAATAAAAATAATATTTATATTAGCTTTATATATTAATAGCATTTTATTTGCTATATTTTTTAATATTATGTATAACTAATACTCAGAGTAATTATATTTTCTATTACGTATCGAGGAGTTAATTATTAATACCATGAATTTTTCTATATTTTAATCTTAAAACAATTAAAGTGATGGCTGCGTTGGATGTATATTTTGTGAAGCCAATCACATGTTGTGTTTTTTAAATTAATTTGTTCTGGACTGCTTTGACTATTCATCAATTAAGATGCCAATCACATGCTGCTTTTAGCAAGTTGTTTGTTGATTTTTTTCAATCAGTTAATGCAATTTCATTTTCTCTCTTCCTTCCAACCAACCAACCAACAAAATTTACTGCTATGAGTACATCTATAAGAAAAAAAAAAGGCTTATAAATATTTTAAAATATATTTTTTATTATATTGATATGAGAAAAATTGGGTTTGAAAAGTGGATTTAGGATATAAATATAGGGTTATCTATATGTATTTCAACTATGTTTTATAGGTTTGAAATTTAATTTTATGCTTTTTTCGTTTTAAAAAGAATGACCTCTTTTTCTTTTTACTTTGTATAAAAAAGAATGATTTTTTTTTCAACAACTTTTCACGTGACATGATTAAGGTCACAAGATTAAAAGACAATTTTGTACATTTAACATAACTTTAATTTAGGACCACATGATTAAAAGTCTTATTTATTTTTTTAAATTCCGTGTCAAATTAAACTAGAACATTCTTTGTGAAAACGGAGAGAGTAACAACTACTGATCACCCTATCCTTCACCTTTTATAATCCCAATGAGGGCCCATGTTGTGTCCTTATATAAGTTATTTTTGTTAGTACTATTTATCGTGTCTAGTGTATTTTTATTAGATTTTAAAAAAAAATTATTTTTGCATTGAAACGAGGTCTATAAAAAATATCCTCTCTATCTGATAAAAGTAAGGTCTAAGTACACTCTACTCTCCTTACAGAATAATATTGCCAATGAACACTATGATGCATTATGTGTAAACTGATGATATTACCAATGGCCAATATGATACATTATGTGAAATTACATACAAAAATTTCCTTTGTAAACGATTATGAGTTAATTTAACTTTGATGTGACAGTAAGAGTTCTGCAAACAATATCATCGAAACTTCA</genome_strand>
        <mrna_strand>CTCTTATCTCCTCCCTTTTTCTCCATTCCCGCCTTTCATTTCAAGGCTTCAACAACTATAACTCATTCTTCATTAATG...........................................................................................CATTCGGGATTA-ACAACTTG---AAATTGAATTTCTTCGTCTGAGCAATAATGGATACTACTTGTATCAGATTTTGTGCTTTATTTCTCTTTCTATATTTGCTTTCTACATTGAGATCTGTTGACGCTCAACTTTGGCCAGAAGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTTCTGCAAACAATATCATCGAAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>65</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3602" PGL_stop="2611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3602" e_stop="2611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="3602" e_stop="2611" e_length="992"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3602" stop="2863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3602" stop="3017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3602" stop="3094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3397" stop="2783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3397" stop="2909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3288" stop="2611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGTTTTCTCTTAGGACAAATTTTACAGGCATTGATGGATCTTTCGTCACAAATGCTAGTAGATCAATCACATTGACAGGATGGGTTAAGTCATCCTACGGGAACATCACTACTAAGTCAGCTCAAGTTTTAAGTTATAGTAATTATATGGTGGAGGGTAACGGAGGAAATTTGCAAAATGTGGATCAGATTATTTATTTCAATGAAACTGTTGATGTCGTGAGGCCAACTTCATATGTTCAGTCTCGTAAGTCCTTCAAAAAGTTTCTGCTTCTCTTGCATTCTGACAATGTAGACAAAGGAGATGAAAGCTATGCCTCAATCTCAAATGTTACGTTGGGATTTGATGATAATAGGATAAAGACTTCCAAGAACGTATCGTCAGCCAGCTCTACTGAAAACATGCAAAAAGCACAGGGACATATTCTTGTAAAGGGGCAATTGGTTGTCAGTGGGATCGGGAGTACCCAACAAGTCTATAAATATAAGGATGATTCATTCTGCTACTCCAGGAACATAAGCAGCTCAAATTACACAATACATTATGATAAAGTTAGCGATAATTGCCCCAGAATCACTTTGTCTCGTTTGCCTTTCAGCTTTGGCAAATTTCAATCTGTTCCTGCTCGAAGGGTCTCTTTGGCATCTCATCTTGGTGATGTTAAAGATGGTGTCTGACATTGCTCCATTTTATTGTCTTCCACTCCTTCAACATAACAGTTCCTCTATGTTTACTGCTGTCAAAGAAGTTGTCAACTGTCACGGCCTTCCAATTATGATTGTAAGGCAATACTTCTGCATTGCCTCTTTTGTTTCTTGCGTTTGTTCGGGTTTTCACTTTGTGCAATAAGAGACAAGTTTCAAACAATAGCATCACCTTGCATTTGTGTTGCTGGATATTCCAAGATTAAACTTCACTAAAATTGTCACCAGTGGTTTTCCCTGGGAGAATTATACTTAAAGTGATATTACAATTTACCTGAATCACTTT</gDNA_template>
            <first_frame> F  V  F  S  *  D  K  F  Y  R  H  *  W  I  F  R  H  K  C  *  *  I  N  H  I  D  R  M  G  *  V  I  L  R  E  H  H  Y  *  V  S  S  S  F  K  L  *  *  L  Y  G  G  G  *  R  R  K  F  A  K  C  G  S  D  Y  L  F  Q  *  N  C  *  C  R  E  A  N  F  I  C  S  V  S  *  V  L  Q  K  V  S  A  S  L  A  F  *  Q  C  R  Q  R  R  *  K  L  C  L  N  L  K  C  Y  V  G  I  *  *  *  *  D  K  D  F  Q  E  R  I  V  S  Q  L  Y  *  K  H  A  K  S  T  G  T  Y  S  C  K  G  A  I  G  C  Q  W  D  R  E  Y  P  T  S  L  *  I  *  G  *  F  I  L  L  L  Q  E  H  K  Q  L  K  L  H  N  T  L  *  *  S  *  R  *  L  P  Q  N  H  F  V  S  F  A  F  Q  L  W  Q  I  S  I  C  S  C  S  K  G  L  F  G  I  S  S  W  *  C  *  R  W  C  L  T  L  L  H  F  I  V  F  H  S  F  N  I  T  V  P  L  C  L  L  L  S  K  K  L  S  T  V  T  A  F  Q  L  *  L  *  G  N  T  S  A  L  P  L  L  F  L  A  F  V  R  V  F  T  L  C  N  K  R  Q  V  S  N  N  S  I  T  L  H  L  C  C  W  I  F  Q  D  *  T  S  L  K  L  S  P  V  V  F  P  G  R  I  I  L  K  V  I  L  Q  F  T  *  I  T   </first_frame>
            <second_frame>  S  F  S  L  R  T  N  F  T  G  I  D  G  S  F  V  T  N  A  S  R  S  I  T  L  T  G  W  V  K  S  S  Y  G  N  I  T  T  K  S  A  Q  V  L  S  Y  S  N  Y  M  V  E  G  N  G  G  N  L  Q  N  V  D  Q  I  I  Y  F  N  E  T  V  D  V  V  R  P  T  S  Y  V  Q  S  R  K  S  F  K  K  F  L  L  L  L  H  S  D  N  V  D  K  G  D  E  S  Y  A  S  I  S  N  V  T  L  G  F  D  D  N  R  I  K  T  S  K  N  V  S  S  A  S  S  T  E  N  M  Q  K  A  Q  G  H  I  L  V  K  G  Q  L  V  V  S  G  I  G  S  T  Q  Q  V  Y  K  Y  K  D  D  S  F  C  Y  S  R  N  I  S  S  S  N  Y  T  I  H  Y  D  K  V  S  D  N  C  P  R  I  T  L  S  R  L  P  F  S  F  G  K  F  Q  S  V  P  A  R  R  V  S  L  A  S  H  L  G  D  V  K  D  G  V  *  H  C  S  I  L  L  S  S  T  P  S  T  *  Q  F  L  Y  V  Y  C  C  Q  R  S  C  Q  L  S  R  P  S  N  Y  D  C  K  A  I  L  L  H  C  L  F  C  F  L  R  L  F  G  F  S  L  C  A  I  R  D  K  F  Q  T  I  A  S  P  C  I  C  V  A  G  Y  S  K  I  K  L  H  *  N  C  H  Q  W  F  S  L  G  E  L  Y  L  K  *  Y  Y  N  L  P  E  S  L  </second_frame>
            <third_frame>   R  F  L  L  G  Q  I  L  Q  A  L  M  D  L  S  S  Q  M  L  V  D  Q  S  H  *  Q  D  G  L  S  H  P  T  G  T  S  L  L  S  Q  L  K  F  *  V  I  V  I  I  W  W  R  V  T  E  E  I  C  K  M  W  I  R  L  F  I  S  M  K  L  L  M  S  *  G  Q  L  H  M  F  S  L  V  S  P  S  K  S  F  C  F  S  C  I  L  T  M  *  T  K  E  M  K  A  M  P  Q  S  Q  M  L  R  W  D  L  M  I  I  G  *  R  L  P  R  T  Y  R  Q  P  A  L  L  K  T  C  K  K  H  R  D  I  F  L  *  R  G  N  W  L  S  V  G  S  G  V  P  N  K  S  I  N  I  R  M  I  H  S  A  T  P  G  T  *  A  A  Q  I  T  Q  Y  I  M  I  K  L  A  I  I  A  P  E  S  L  C  L  V  C  L  S  A  L  A  N  F  N  L  F  L  L  E  G  S  L  W  H  L  I  L  V  M  L  K  M  V  S  D  I  A  P  F  Y  C  L  P  L  L  Q  H  N  S  S  S  M  F  T  A  V  K  E  V  V  N  C  H  G  L  P  I  M  I  V  R  Q  Y  F  C  I  A  S  F  V  S  C  V  C  S  G  F  H  F  V  Q  *  E  T  S  F  K  Q  *  H  H  L  A  F  V  L  L  D  I  P  R  L  N  F  T  K  I  V  T  S  G  F  P  W  E  N  Y  T  *  S  D  I  T  I  Y  L  N  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3601" stop="2924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLRTNFTGIDGSFVTNASRSITLTGWVKSSYGNITTKSAQVLSYSNYMVEGNGGNLQNVDQIIYFNETVDVVRPTSYVQSRKSFKKFLLLLHSDNVDKGDESYASISNVTLGFDDNRIKTSKNVSSASSTENMQKAQGHILVKGQLVVSGIGSTQQVYKYKDDSFCYSRNISSSNYTIHYDKVSDNCPRITLSRLPFSFGKFQSVPARRVSLASHLGDVKDGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2884" stop="2681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFLYVYCCQRSCQLSRPSNYDCKAILLHCLFCFLRLFGFSLCAIRDKFQTIASPCICVAGYSKIKLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3468" PGL_stop="3930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3468" e_stop="3930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="3468" e_stop="3930" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3468" stop="3930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAAACTTGAGCTGACTTAGTAGTGATGTTCCCGTAGGATGACTTAACCCATCCTGTCAATGTGATTGATCTACTAGCATTTGTGACGAAAGATCCATCAATGCCTGTAAAATTTGTCCTAAGAGAAAACGAAAGAGGCAGACTAGTATACTTCAATAACTTCCCTTCTGTCTTTATACTCTTATCATCCAACCAAAGATGCAAATTTGCATCAATGTACCACACATTAAGAGCATTAGTGACACTGAATGAAATCTTATGCATATTTCCGTCTAAAATCTTCCCTATAAATGGCGTTATTTCAATATCATATGATGGAAGATCAAACGATCCGATCCCGCTTATAGGTCTCCACAAGAGAGGATTGACACCCCCGGTATAGATCACCGTGAACGGCCAAACTACACCAACCACCACATCATCCACACTAACTACTACTTCCCTAAAAGCTCCATTCCCTG</gDNA_template>
            <first_frame> L  K  T  *  A  D  L  V  V  M  F  P  *  D  D  L  T  H  P  V  N  V  I  D  L  L  A  F  V  T  K  D  P  S  M  P  V  K  F  V  L  R  E  N  E  R  G  R  L  V  Y  F  N  N  F  P  S  V  F  I  L  L  S  S  N  Q  R  C  K  F  A  S  M  Y  H  T  L  R  A  L  V  T  L  N  E  I  L  C  I  F  P  S  K  I  F  P  I  N  G  V  I  S  I  S  Y  D  G  R  S  N  D  P  I  P  L  I  G  L  H  K  R  G  L  T  P  P  V  *  I  T  V  N  G  Q  T  T  P  T  T  T  S  S  T  L  T  T  T  S  L  K  A  P  F  P  </first_frame>
            <second_frame>  L  K  L  E  L  T  *  *  *  C  S  R  R  M  T  *  P  I  L  S  M  *  L  I  Y  *  H  L  *  R  K  I  H  Q  C  L  *  N  L  S  *  E  K  T  K  E  A  D  *  Y  T  S  I  T  S  L  L  S  L  Y  S  Y  H  P  T  K  D  A  N  L  H  Q  C  T  T  H  *  E  H  *  *  H  *  M  K  S  Y  A  Y  F  R  L  K  S  S  L  *  M  A  L  F  Q  Y  H  M  M  E  D  Q  T  I  R  S  R  L  *  V  S  T  R  E  D  *  H  P  R  Y  R  S  P  *  T  A  K  L  H  Q  P  P  H  H  P  H  *  L  L  L  P  *  K  L  H  S  L </second_frame>
            <third_frame>   *  N  L  S  *  L  S  S  D  V  P  V  G  *  L  N  P  S  C  Q  C  D  *  S  T  S  I  C  D  E  R  S  I  N  A  C  K  I  C  P  K  R  K  R  K  R  Q  T  S  I  L  Q  *  L  P  F  C  L  Y  T  L  I  I  Q  P  K  M  Q  I  C  I  N  V  P  H  I  K  S  I  S  D  T  E  *  N  L  M  H  I  S  V  *  N  L  P  Y  K  W  R  Y  F  N  I  I  *  W  K  I  K  R  S  D  P  A  Y  R  S  P  Q  E  R  I  D  T  P  G  I  D  H  R  E  R  P  N  Y  T  N  H  H  I  I  H  T  N  Y  Y  F  P  K  S  S  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3507" stop="3851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDLTHPVNVIDLLAFVTKDPSMPVKFVLRENERGRLVYFNNFPSVFILLSSNQRCKFASMYHTLRALVTLNEILCIFPSKIFPINGVISISYDGRSNDPIPLIGLHKRGLTPPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6441" PGL_stop="10806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6446" e_stop="6603"/>
            <exon e_start="7143" e_stop="7488"/>
            <exon e_start="8539" e_stop="8940"/>
            <exon e_start="10250" e_stop="10806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.854"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.971"/>
          <exon-intron don_prob="0.979" acc_prob="0.991" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.854">
            <gDNA_exon_boundary e_start="6446" e_stop="6603" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6604" i_stop="7142" i_length="539"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="7143" e_stop="7488" e_length="346"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="8539" e_stop="8940" e_length="402"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8941" i_stop="10249" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10250" e_stop="10806" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6446" stop="6603"/>
              <exon start="7143" stop="7488"/>
              <exon start="8539" stop="8585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6446" stop="6603"/>
              <exon start="7143" stop="7488"/>
              <exon start="8539" stop="8568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6502" stop="6603"/>
              <exon start="7143" stop="7488"/>
              <exon start="8539" stop="8757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6502" stop="6603"/>
              <exon start="7143" stop="7488"/>
              <exon start="8539" stop="8580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6502" stop="6603"/>
              <exon start="7143" stop="7434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7354" stop="7488"/>
              <exon start="8539" stop="8719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7355" stop="7488"/>
              <exon start="8539" stop="8940"/>
              <exon start="10250" stop="10300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8695" stop="8940"/>
              <exon start="10250" stop="10806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="10784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAG : ACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT : GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGG : GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</gDNA_template>
            <first_frame> V  M  *  G  I  W  S  E  R  *  S  I  S  S  A  A  A  L  L  N  G  E  R  R  M  T  N  P  L  F  R  G  F  R  R  L  A  L  L  S  L  S  K  P  L  F  S  S  S  T  F  S  R :   P  I  L  G  N  P  E  K  F  L  N  L  S  R  L  V  L  K  E  R  L  I  Q  Q  N  P  C  W  E  S  R  N  F  S  H  G  R  L  D  F  V  M  T  R  D  G  K  L  K  F  E  E  H  E  V  E  A  P  K  S  E  K  W  K  T  K  K  K  L  K  L  Q  R  K  R  E  K  K  K  R  K  A  A  N  K  R  D  P  R  R  L  G  V  Q  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  M  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  A  Q  K  K  S  N  Y  V  P  I  G  K  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  R  H  E  T  V  K  V  I  C  K  P  C  K  P  G  Q  I  Q  E  Y  V  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  N  D  T  I  V  F  Y  R  G  R  E  Y  V  Q  P  E  I  M  Y  P  I  D  T  L  S  K  K  R  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  H  F  I  A  I  A  E  K  E  L  A  L  Y  Y  R  H  V  A  L  Y  D  E  P  N  I  Q  S  A  Y  S  I  L  D  D  S  T  S  T  S  E  K  R  N  D  E  I  G  E  E  N  Y  S  A  D  E  S  I  S  L  D  L  E  L  P  Q  V  D  D  Y  C  S  D  D  K  Q  S  L  S  E  F  G  F  E  D  T  D  E  S  S  S  D  E  L  D  S  G  E  E  E  T  S  N  Y  C  G  S  I  W  G  N  Y  *  M  L  R  L  E  I  M  W  F  *  F  L  I  *  *  I  E  G  L  E  *  N  R  I  F  S  N  S  K  S  S  V  W  L  S  *  N  W  H  K  N  *  N  L  I  F  N  F  L  T  Q  D  R  S  Y  F  L  C   </first_frame>
            <second_frame>  L  C  E  E  F  G  L  S  G  E  V  S  H  R  R  R  L  Y  *  T  V  N  G  V  *  Q  I  L  C  F  E  V  F  E  D  L  P  Y  F  H  L  A  S  L  S  S  L  L  L  P  F  L   : D  Q  F  L  E  I  Q  K  S  F  *  T  C  Q  G  *  C  L  R  R  G  *  S  N  K  T  P  V  G  N  Q  G  T  L  V  M  E  D  W  I  L  *  *  Q  E  M  G  N  *  S  L  R  N  M  K  W  R  H  Q  S  R  R  N  G  R  Q  R  R  S  *  S  C  K  G  R  G  R  R  R  R  E  K  L  P  T  R  E  I  R  E  D  L  V  F  R  G  R  R  R  S  R  N  L  T  L  L  K  K  E  S  N  R  R  L  K  M :   Q  K  S  K  K  L  C  *  L  R  D  *  R  D  M  R  L  P  K  F  K  V  P  R  L  S  H  I  F  S  L  V  K  N  D  S  I  L  K  R  W  H  K  K  S  L  I  M  C  L  L  A  K  G  E  S  L  E  V  L  F  L  I  C  I  Y  I  G  K  D  M  K  L  S  K  S  Y  A  N  P  A  N  L  V  R  F  K  N  M  L  M  K  L  Q  D  *  V  V  A  F  R  F  R  *  L  Q  M  I  P  S  F  F  T  E  E  G  N  M  C  S  L  K  L  C  I  L  L  I  H  C  R  R  R  G :   R  W  K  N  Q  N  T  S  N  R  *  S  L  *  D  I  S  L  P  L  L  R  R  N  L  H  S  T  I  D  M  L  P  Y  M  M  N  Q  I  F  R  V  L  T  P  S  L  M  I  Q  Q  V  Q  V  K  N  E  M  M  K  *  E  R  R  T  I  Q  Q  T  N  L  F  P  W  I  S  S  Y  H  K  L  M  I  I  A  R  M  I  N  N  L  *  A  N  L  D  L  R  I  L  M  N  Q  V  V  M  S  W  I  L  G  R  R  K  L  V  I  T  A  V  A  Y  G  E  I  I  E  C  *  D  L  K  *  C  G  F  N  S  *  S  D  K  L  R  D  W  N  R  I  E  F  F  Q  I  L  N  L  L  F  G  Y  P  E  I  G  T  K  T  R  T  *  F  L  I  F  *  P  K  I  D  H  I  S  Y  V  </second_frame>
            <third_frame>   Y  V  R  N  L  V  *  A  V  K  Y  L  I  G  G  G  S  I  E  R  *  T  A  Y  D  K  S  S  V  S  R  F  S  K  T  C  L  T  F  T  *  Q  A  S  L  L  F  F  Y  L  F  *  :  T  N  S  W  K  S  R  K  V  F  E  L  V  K  V  S  A  *  G  E  V  N  P  T  K  P  L  L  G  I  K  E  L  *  S  W  K  I  G  F  C  D  D  K  R  W  E  T  K  V  *  G  T  *  S  G  G  T  K  V  G  E  M  E  D  K  E  E  A  E  A  A  K  E  E  G  E  E  E  E  K  S  C  Q  Q  E  R  S  E  K  T  W  C  S  G  E  E  E  E  A  E  I  *  H  C  *  R  K  N  Q  T  E  D  *  K   : C  K  S  Q  R  S  Y  A  N  *  E  T  K  E  I  *  G  Y  Q  S  S  R  S  R  G  *  A  T  F  S  H  W  *  R  T  I  L  Y  *  K  D  G  T  K  K  V  *  L  C  A  Y  W  Q  K  G  S  L  W  R  C  Y  S  *  Y  A  S  T  L  E  K  T  *  N  C  Q  S  H  M  Q  T  L  Q  T  W  S  D  S  R  I  C  *  *  N  C  K  T  E  W  W  H  S  D  S  D  N  C  K  *  Y  H  R  F  L  P  R  K  G  I  C  A  A  *  N  Y  V  S  Y  *  Y  T  V  E  E  E   : G  V  G  K  I  K  I  R  A  I  A  R  V  C  E  T  F  H  C  H  C  *  E  G  T  C  T  L  L  *  T  C  C  P  I  *  *  T  K  Y  S  E  C  L  L  H  P  *  *  F  N  K  Y  K  *  K  T  K  *  *  N  R  R  G  E  L  F  S  R  R  I  Y  F  L  G  S  R  V  T  T  S  *  *  L  L  L  G  *  *  T  I  F  K  R  I  W  I  *  G  Y  *  *  I  K  *  *  *  V  G  F  W  G  G  G  N  *  *  L  L  R  *  H  M  G  K  L  L  N  V  E  T  *  N  N  V  V  L  I  L  D  L  I  N  *  G  I  G  I  E  *  N  F  F  K  F  *  I  F  C  L  V  I  L  K  L  A  Q  K  L  E  L  D  F  *  F  F  N  P  R  *  I  I  F  L  M  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6476" stop="6603"/>
                    <exon start="7143" stop="7488"/>
                    <exon start="8539" stop="8940"/>
                    <exon start="10250" stop="10630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISSAAALLNGERRMTNPLFRGFRRLALLSLSKPLFSSSTFSRPILGNPEKFLNLSRLVLKERLIQQNPCWESRNFSHGRLDFVMTRDGKLKFEEHEVEAPKSEKWKTKKKLKLQRKREKKKRKAANKRDPRRLGVQGKKKKQKFDTAEERIKQKIENAKVKEAMLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMAQKKSNYVPIGKRGVFGGVILNMHLHWKRHETVKVICKPCKPGQIQEYVDEIARLSGGIPIQIIANDTIVFYRGREYVQPEIMYPIDTLSKKRALEKSKYEQSLESVRHFIAIAEKELALYYRHVALYDEPNIQSAYSILDDSTSTSEKRNDEIGEENYSADESISLDLELPQVDDYCSDDKQSLSEFGFEDTDESSSDELDSGEEETSNYCGSIWGNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6441" e_stop="6603"/>
            <exon e_start="7116" e_stop="7488"/>
            <exon e_start="8539" e_stop="8940"/>
            <exon e_start="10250" e_stop="10806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.657" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.991" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6441" e_stop="6603" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.657">
            <gDNA_intron_boundary i_start="6604" i_stop="7115" i_length="512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7116" e_stop="7488" e_length="373"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7489" i_stop="8538" i_length="1050"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="8539" e_stop="8940" e_length="402"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8941" i_stop="10249" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10250" e_stop="10806" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6441" stop="6603"/>
              <exon start="7116" stop="7488"/>
              <exon start="8539" stop="8860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6442" stop="6603"/>
              <exon start="7116" stop="7488"/>
              <exon start="8539" stop="8568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6457" stop="6603"/>
              <exon start="7116" stop="7488"/>
              <exon start="8539" stop="8560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7354" stop="7488"/>
              <exon start="8539" stop="8719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7355" stop="7488"/>
              <exon start="8539" stop="8940"/>
              <exon start="10250" stop="10300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8695" stop="8940"/>
              <exon start="10250" stop="10806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="10784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAGTTATGTGAGGAATTTGGTCTGAGCGGTGAAGTATCTCATCGGCGGCGGCTCTATTGAACGGTGAACGGCGTATGACAAATCCTCTGTTTCGAGGTTTTCGAAGACTTGCCTTACTTTCACTTAGCAAGCCTCTCTTCTCTTCTTCTACCTTTTCTAG : GCACTTAAGTTTGTCCAATTTAGTTAGACCAATTCTTGGAAATCCAGAAAAGTTTTTGAACTTGTCAAGGTTAGTGCTTAAGGAGAGGTTAATCCAACAAAACCCCTGTTGGGAATCAAGGAACTTTAGTCATGGAAGATTGGATTTTGTGATGACAAGAGATGGGAAACTAAAGTTTGAGGAACATGAAGTGGAGGCACCAAAGTCGGAGAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT : GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGG : GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</gDNA_template>
            <first_frame> L  K  L  C  E  E  F  G  L  S  G  E  V  S  H  R  R  R  L  Y  *  T  V  N  G  V  *  Q  I  L  C  F  E  V  F  E  D  L  P  Y  F  H  L  A  S  L  S  S  L  L  L  P  F  L   : G  T  *  V  C  P  I  *  L  D  Q  F  L  E  I  Q  K  S  F  *  T  C  Q  G  *  C  L  R  R  G  *  S  N  K  T  P  V  G  N  Q  G  T  L  V  M  E  D  W  I  L  *  *  Q  E  M  G  N  *  S  L  R  N  M  K  W  R  H  Q  S  R  R  N  G  R  Q  R  R  S  *  S  C  K  G  R  G  R  R  R  R  E  K  L  P  T  R  E  I  R  E  D  L  V  F  R  G  R  R  R  S  R  N  L  T  L  L  K  K  E  S  N  R  R  L  K  M :   Q  K  S  K  K  L  C  *  L  R  D  *  R  D  M  R  L  P  K  F  K  V  P  R  L  S  H  I  F  S  L  V  K  N  D  S  I  L  K  R  W  H  K  K  S  L  I  M  C  L  L  A  K  G  E  S  L  E  V  L  F  L  I  C  I  Y  I  G  K  D  M  K  L  S  K  S  Y  A  N  P  A  N  L  V  R  F  K  N  M  L  M  K  L  Q  D  *  V  V  A  F  R  F  R  *  L  Q  M  I  P  S  F  F  T  E  E  G  N  M  C  S  L  K  L  C  I  L  L  I  H  C  R  R  R  G :   R  W  K  N  Q  N  T  S  N  R  *  S  L  *  D  I  S  L  P  L  L  R  R  N  L  H  S  T  I  D  M  L  P  Y  M  M  N  Q  I  F  R  V  L  T  P  S  L  M  I  Q  Q  V  Q  V  K  N  E  M  M  K  *  E  R  R  T  I  Q  Q  T  N  L  F  P  W  I  S  S  Y  H  K  L  M  I  I  A  R  M  I  N  N  L  *  A  N  L  D  L  R  I  L  M  N  Q  V  V  M  S  W  I  L  G  R  R  K  L  V  I  T  A  V  A  Y  G  E  I  I  E  C  *  D  L  K  *  C  G  F  N  S  *  S  D  K  L  R  D  W  N  R  I  E  F  F  Q  I  L  N  L  L  F  G  Y  P  E  I  G  T  K  T  R  T  *  F  L  I  F  *  P  K  I  D  H  I  S  Y  V  </first_frame>
            <second_frame>  *  S  Y  V  R  N  L  V  *  A  V  K  Y  L  I  G  G  G  S  I  E  R  *  T  A  Y  D  K  S  S  V  S  R  F  S  K  T  C  L  T  F  T  *  Q  A  S  L  L  F  F  Y  L  F  *  :  A  L  K  F  V  Q  F  S  *  T  N  S  W  K  S  R  K  V  F  E  L  V  K  V  S  A  *  G  E  V  N  P  T  K  P  L  L  G  I  K  E  L  *  S  W  K  I  G  F  C  D  D  K  R  W  E  T  K  V  *  G  T  *  S  G  G  T  K  V  G  E  M  E  D  K  E  E  A  E  A  A  K  E  E  G  E  E  E  E  K  S  C  Q  Q  E  R  S  E  K  T  W  C  S  G  E  E  E  E  A  E  I  *  H  C  *  R  K  N  Q  T  E  D  *  K   : C  K  S  Q  R  S  Y  A  N  *  E  T  K  E  I  *  G  Y  Q  S  S  R  S  R  G  *  A  T  F  S  H  W  *  R  T  I  L  Y  *  K  D  G  T  K  K  V  *  L  C  A  Y  W  Q  K  G  S  L  W  R  C  Y  S  *  Y  A  S  T  L  E  K  T  *  N  C  Q  S  H  M  Q  T  L  Q  T  W  S  D  S  R  I  C  *  *  N  C  K  T  E  W  W  H  S  D  S  D  N  C  K  *  Y  H  R  F  L  P  R  K  G  I  C  A  A  *  N  Y  V  S  Y  *  Y  T  V  E  E  E   : G  V  G  K  I  K  I  R  A  I  A  R  V  C  E  T  F  H  C  H  C  *  E  G  T  C  T  L  L  *  T  C  C  P  I  *  *  T  K  Y  S  E  C  L  L  H  P  *  *  F  N  K  Y  K  *  K  T  K  *  *  N  R  R  G  E  L  F  S  R  R  I  Y  F  L  G  S  R  V  T  T  S  *  *  L  L  L  G  *  *  T  I  F  K  R  I  W  I  *  G  Y  *  *  I  K  *  *  *  V  G  F  W  G  G  G  N  *  *  L  L  R  *  H  M  G  K  L  L  N  V  E  T  *  N  N  V  V  L  I  L  D  L  I  N  *  G  I  G  I  E  *  N  F  F  K  F  *  I  F  C  L  V  I  L  K  L  A  Q  K  L  E  L  D  F  *  F  F  N  P  R  *  I  I  F  L  M  S </second_frame>
            <third_frame>   E  V  M  *  G  I  W  S  E  R  *  S  I  S  S  A  A  A  L  L  N  G  E  R  R  M  T  N  P  L  F  R  G  F  R  R  L  A  L  L  S  L  S  K  P  L  F  S  S  S  T  F  S  R :   H  L  S  L  S  N  L  V  R  P  I  L  G  N  P  E  K  F  L  N  L  S  R  L  V  L  K  E  R  L  I  Q  Q  N  P  C  W  E  S  R  N  F  S  H  G  R  L  D  F  V  M  T  R  D  G  K  L  K  F  E  E  H  E  V  E  A  P  K  S  E  K  W  K  T  K  K  K  L  K  L  Q  R  K  R  E  K  K  K  R  K  A  A  N  K  R  D  P  R  R  L  G  V  Q  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  M  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  A  Q  K  K  S  N  Y  V  P  I  G  K  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  R  H  E  T  V  K  V  I  C  K  P  C  K  P  G  Q  I  Q  E  Y  V  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  N  D  T  I  V  F  Y  R  G  R  E  Y  V  Q  P  E  I  M  Y  P  I  D  T  L  S  K  K  R  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  H  F  I  A  I  A  E  K  E  L  A  L  Y  Y  R  H  V  A  L  Y  D  E  P  N  I  Q  S  A  Y  S  I  L  D  D  S  T  S  T  S  E  K  R  N  D  E  I  G  E  E  N  Y  S  A  D  E  S  I  S  L  D  L  E  L  P  Q  V  D  D  Y  C  S  D  D  K  Q  S  L  S  E  F  G  F  E  D  T  D  E  S  S  S  D  E  L  D  S  G  E  E  E  T  S  N  Y  C  G  S  I  W  G  N  Y  *  M  L  R  L  E  I  M  W  F  *  F  L  I  *  *  I  E  G  L  E  *  N  R  I  F  S  N  S  K  S  S  V  W  L  S  *  N  W  H  K  N  *  N  L  I  F  N  F  L  T  Q  D  R  S  Y  F  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6476" stop="6603"/>
                    <exon start="7116" stop="7488"/>
                    <exon start="8539" stop="8940"/>
                    <exon start="10250" stop="10630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISSAAALLNGERRMTNPLFRGFRRLALLSLSKPLFSSSTFSRHLSLSNLVRPILGNPEKFLNLSRLVLKERLIQQNPCWESRNFSHGRLDFVMTRDGKLKFEEHEVEAPKSEKWKTKKKLKLQRKREKKKRKAANKRDPRRLGVQGKKKKQKFDTAEERIKQKIENAKVKEAMLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMAQKKSNYVPIGKRGVFGGVILNMHLHWKRHETVKVICKPCKPGQIQEYVDEIARLSGGIPIQIIANDTIVFYRGREYVQPEIMYPIDTLSKKRALEKSKYEQSLESVRHFIAIAEKELALYYRHVALYDEPNIQSAYSILDDSTSTSEKRNDEIGEENYSADESISLDLELPQVDDYCSDDKQSLSEFGFEDTDESSSDELDSGEEETSNYCGSIWGNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="11308" PGL_stop="13877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11308" e_stop="11479"/>
            <exon e_start="12657" e_stop="12740"/>
            <exon e_start="13103" e_stop="13185"/>
            <exon e_start="13321" e_stop="13877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="11308" e_stop="11479" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="11480" i_stop="12656" i_length="1177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12657" e_stop="12740" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12741" i_stop="13102" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13103" e_stop="13185" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13186" i_stop="13320" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13321" e_stop="13877" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11308" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11310" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11310" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11317" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11317" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11328" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11331" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11332" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11333" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746567" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11347" stop="11479"/>
              <exon start="12657" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12674" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12714" stop="12740"/>
              <exon start="13103" stop="13185"/>
              <exon start="13321" stop="13877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAGCAGTGATAAGGAGATATTTTTAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG : CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC : ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA : TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</gDNA_template>
            <first_frame> V  K  Q  *  *  G  D  I  F  K  K  K  K  M  A  G  L  S  Q  D  W  E  P  V  V  I  R  K  K  A  P  T  A  A  A  R  K  D  E  K  A  V  N  A  A  R  R  A  G  A  E  I  E  T  V  R  K   : A  T  A  G  S  N  K  A  A  S  S  S  T  T  L  N  T  R  K  L  D  E  D  T  E  N  L  S   : H  Q  K  V  P  T  E  L  K  K  A  I  M  Q  A  R  Q  D  K  K  L  T  Q  S  Q  L  A  Q  :  L  I  N  E  K  P  Q  I  I  Q  E  Y  E  S  G  K  A  I  P  N  Q  Q  I  I  S  K  L  E  R  A  L  G  A  K  L  R  G  K  K  *  T  A  K  V  M  V  V  V  V  G  C  V  C  V  C  E  P  F  E  R  L  H  R  L  G  S  K  C  G  H  V  H  E  P  F  E  C  F  L  *  P  V  R  W  F  L  C  L  D  S  G  R  Y  F  R  C  *  N  *  M  F  F  L  S  K  M  D  V  L  A  L  A  R  C  L  R  I  A  I  R  T  I  Q  Q  I  *  L  S  R  H  L  N  L  N  E  H  D  C  S  Q  D  I  K  F  I  L  P  Y  Q  R  P  L  H  L  G  I  V  K  L  L  I  Q  I  K  R  *  E  L  V  N  D  L  K  I  D  Q  L  H  Y  V  I  V  F  L  F   </first_frame>
            <second_frame>  *  S  S  D  K  E  I  F  L  K  K  K  R  W  P  D  C  H  K  I  G  S  R  W  *  F  A  R  K  R  R  P  P  P  H  G  K  M  R  K  Q  S  T  P  P  V  E  P  V  P  K  S  K  P  S  E  K  :  L  L  L  G  Q  T  R  L  P  L  V  A  Q  R  *  T  R  E  S  W  M  K  I  L  R  I  C  H  :  I  K  R  Y  L  L  N  *  R  K  R  L  C  K  L  D  R  I  R  S  L  L  S  L  N  L  P  N :   *  *  T  K  N  H  R  S  F  K  S  M  N  L  E  R  Q  F  Q  T  N  R  *  F  L  N  W  R  E  L  L  V  R  N  F  V  E  R  N  K  L  Q  K  *  W  W  W  W  W  G  V  C  V  C  V  N  L  L  N  V  Y  I  V  W  V  L  S  V  V  M  Y  M  S  L  L  N  V  F  F  S  Q  *  G  G  S  C  V  W  I  R  D  V  T  F  V  V  K  T  E  C  F  S  C  R  K  W  M  C  L  L  L  L  D  V  *  G  L  Q  L  G  Q  F  S  K  F  D  Y  P  D  I  L  I  L  M  N  M  I  V  H  K  I  *  S  L  F  C  H  T  N  V  L  C  I  *  E  L  L  S  Y  *  F  R  L  K  D  E  N  W  L  M  T  L  K  *  I  S  Y  I  M  *  L  Y  F  F  L  </second_frame>
            <third_frame>   K  A  V  I  R  R  Y  F  *  K  K  K  D  G  R  I  V  T  R  L  G  A  G  G  D  S  Q  E  S  A  D  R  R  R  T  E  R  *  E  S  S  Q  R  R  P  S  S  R  C  R  N  R  N  R  Q  K  S :   Y  C  W  V  K  Q  G  C  L  *  *  H  N  V  E  H  E  K  A  G  *  R  Y  *  E  S  V  T :   S  K  G  T  Y  *  T  E  E  S  D  Y  A  S  S  T  G  *  E  A  Y  S  V  S  T  C  P   : I  D  K  R  K  T  T  D  H  S  R  V  *  I  W  K  G  N  S  K  P  T  D  N  F  *  T  G  E  S  S  W  C  E  T  S  W  K  E  I  N  C  K  S  D  G  G  G  G  G  V  C  V  C  V  *  T  F  *  T  S  T  S  F  G  F  *  V  W  S  C  T  *  A  F  *  M  F  S  L  A  S  K  V  V  L  V  S  G  F  G  T  L  L  S  L  L  K  L  N  V  F  P  V  E  N  G  C  A  C  S  C  *  M  F  K  D  C  N  *  D  N  S  A  N  L  I  I  Q  T  S  *  S  *  *  T  *  L  F  T  R  Y  K  V  Y  F  A  I  P  T  S  F  A  F  R  N  C  *  V  T  N  S  D  *  K  M  R  I  G  *  *  P  *  N  R  S  V  T  L  C  N  C  I  S  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11323" stop="11479"/>
                    <exon start="12657" stop="12740"/>
                    <exon start="13103" stop="13185"/>
                    <exon start="13321" stop="13440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDIFKKKKMAGLSQDWEPVVIRKKAPTAAARKDEKAVNAARRAGAEIETVRKATAGSNKAASSSTTLNTRKLDEDTENLSHQKVPTELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIISKLERALGAKLRGKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24594" PGL_stop="25248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24594" e_stop="25248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="24594" e_stop="25248" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24594" stop="25248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATATTAATCAGGTTCTTGCTTATTTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGATTGACTACAAGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTTCTGTCTTCAAGGGTGCTGAATTTGAGGATGCTTATGATTTTTTGGTTGATTGTCATGAGCTGCTATATAAGATGTGCATAGTGAAACGATTTGGTGTTGATTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTCTCTAGCTTGTATATGGAGAAGTATATGCCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTCGAGCAAGGCAGGGTGTCGGTTACTGCGTATGAGGCTAAGTTTCGTGTATTATCTAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTATCT</gDNA_template>
            <first_frame> R  Y  *  S  G  S  C  L  F  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  F  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  I  D  Y  K  T  Y  N  D  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  F  C  L  Q  G  C  *  I  *  G  C  L  *  F  F  G  *  L  S  *  A  A  I  *  D  V  H  S  E  T  I  W  C  *  F  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  A  P  D  F  E  G  *  E  E  R  *  V  P  E  P  R  A  R  Q  G  V  G  Y  C  V  *  G  *  V  S  C  I  I  *  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  I  </first_frame>
            <second_frame>  D  I  N  Q  V  L  A  Y  F  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  S  G  V  Q  H  A  A  V  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  R  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  S  V  F  K  G  A  E  F  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  Y  K  M  C  I  V  K  R  F  G  V  D  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  Y  M  E  K  Y  M  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  V  S  V  T  A  Y  E  A  K  F  R  V  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  S </second_frame>
            <third_frame>   I  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  D  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  L  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  I  V  M  S  C  Y  I  R  C  A  *  *  N  D  L  V  L  I  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  R  H  H  P  *  L  G  H  H  S  L  A  C  I  W  R  S  I  C  P  G  L  *  G  I  G  G  E  M  S  S  *  A  S  S  K  A  G  C  R  L  L  R  M  R  L  S  F  V  Y  Y  L  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24595" stop="25248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DINQVLAYFSGLSDQGQTPPVFSAPAPQVSGVQHAAVVAPRMDASLEIGTFPRLTTRPIMTSDQHELFSKFLKLKPSVFKGAEFEDAYDFLVDCHELLYKMCIVKRFGVDFVTYQFQGNAKMWWRSYVECQPAQAPPMTWASFSSLYMEKYMPRTLRDRRRDEFLSLEQGRVSVTAYEAKFRVLSRYATQLCFSPQERIRRFVKGLRSDLQIPALQVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26259" PGL_stop="25928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26259" e_stop="25928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="26259" e_stop="25928" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26259" stop="25928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTGTCCCAGGCTTGGCCAATGTCACAGTTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAAAATTACATCTAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCAGCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATTAGGAAGATAAATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAAACAA</gDNA_template>
            <first_frame> N  L  S  Q  A  W  P  M  S  Q  F  W  H  Y  N  L  R  L  Q  S  L  E  K  A  K  S  Y  P  K  L  H  L  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  S  G  V  E  T  R  I  S  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  *  E  D  K  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  N   </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  C  H  S  F  G  I  T  I  *  D  C  K  V  W  R  K  P  S  H  T  Q  N  Y  I  *  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  A  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  I  R  K  I  N  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  T  </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  Q  R  S  R  N  T  N  K  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  L  G  R  *  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0020C08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="25958" PGL_stop="26619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25958" e_stop="26619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="25958" e_stop="26619" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25958" stop="26619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATTTATCTTCCTAATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGCTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTAGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAACTGTGACATTGGCCAAGCCTGGGACAGATTTGTTAGTGTGGGAGGGTGACTACACTCCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCAAGATGTGTTTCCGGCAGACCTTCCTGGTATACCACCAGATAGAGATATTGATTTCTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAAGTTCAAAAGTTGTTAGGGAAAGGCTTTATTAGACCAAGTGCATCCTCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  L  S  S  *  F  A  T  G  L  N  L  H  C  E  L  L  D  M  L  I  R  V  S  T  P  L  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  R  C  N  F  G  Y  D  L  A  F  S  K  L  C  N  L  R  L  *  C  Q  N  C  D  I  G  Q  A  W  D  R  F  V  S  V  G  G  *  L  H  S  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  R  C  V  S  G  R  P  S  W  Y  T  T  R  *  R  Y  *  F  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  S  S  K  V  V  R  E  R  L  Y  *  T  K  C  I  L  L   </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  I  Y  L  P  N  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  L  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  L  L  V  W  E  G  D  Y  T  P  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  Q  D  V  F  P  A  D  L  P  G  I  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  V  Q  K  L  L  G  K  G  F  I  R  P  S  A  S  S  W  </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  F  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  A  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  *  M  *  F  W  V  *  L  G  F  L  Q  T  L  Q  S  *  I  V  M  P  K  L  *  H  W  P  S  L  G  Q  I  C  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  K  M  C  F  R  Q  T  F  L  V  Y  H  Q  I  E  I  L  I  S  V  L  I  W  S  W  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  K  F  K  S  C  *  G  K  A  L  L  D  Q  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26151" stop="26618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLILDVILGMTWLSPNFAILDCNAKTVTLAKPGTDLLVWEGDYTPTPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFQDVFPADLPGIPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELKAQVQKLLGKGFIRPSASSW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="28507" PGL_stop="27476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28507" e_stop="27476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="28507" e_stop="27476" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28507" stop="27966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28062" stop="27476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28062" stop="27476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28062" stop="27509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCATGCAATGTTCTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCCGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATATGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTAAGCAACAAAATCAACAATGTCACGTTTCATCCTACTCCACCAAAAATGTTGTTTTAGATCACGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  L  Q  N  L  E  V  N  C  V  P  L  S  D  I  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  M  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  I  D  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  M  R  G  T  H  T  L  P  L  I  I  K  T  P  S  L  S  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  Q  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  V  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  W  A  R  L  P  I  L  P  A  F  L  L  K  A  S  S  T  T  L  A  F  P  E  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  I  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  R  H  A  M  F  S  K  I  *  K  *  T  A  Y  L  Y  L  I  *  W  K  V  E  L  H  A  I  E  Q  F  L  R  C  K  V  W  L  T  S  P  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  C  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  *  T  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  K  Q  Q  N  Q  Q  C  H  V  S  S  Y  S  T  K  N  V  V  L  D  H  D  T  S  W  L  H  Q  G  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  C  G  V  H  I  P  F  P  *  L  S  K  H  L  P  Y  R  F  L  L  L  *  P  L  L  A  T  P  Y  L  G  S  R  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  K  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  G  L  D  F  P  F  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  N  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  I  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  S  Q  P  T  P  N  R  G  S  D  N  Y  V  H  A  P  L  I   </second_frame>
            <third_frame>   G  M  Q  C  S  P  K  F  R  S  K  L  R  T  S  I  *  Y  N  G  K  W  N  S  M  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  R  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  Y  V  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  R  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  F  H  P  T  P  P  K  M  L  F  *  I  T  I  H  L  G  C  T  R  V  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  Y  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  H  L  I  S  D  P  D  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  S  Q  K  S  S  L  L  I  Y  F  *  P  R  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  G  *  T  S  H  S  P  C  L  S  T  *  S  I  F  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  F  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28042" stop="27803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSMRGTHTLPLIIKTPSLSIFASLASPRNTLSRIQISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLVKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28070" stop="27831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYPSLNYQNTFLIDFCFFSLSSQHLISDPDQFLIGKLLSFNLIKKGRSCLHTSQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28340" stop="28116"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVNNYPNGVILTHCLWKTNHEVHCNSLPLPFRNRHSLKCPSRPLVFILYLLTIRALSNKINNVTFHPTPPKMLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="31115" PGL_stop="29872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31115" e_stop="29872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="31115" e_stop="29872" e_length="1244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31115" stop="30405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30539" stop="29902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30499" stop="29872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30499" stop="29924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30449" stop="29897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACTTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  Q  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  A  L  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  L  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  L  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  C  F  *  K  L  L  S  V  *  K  E  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  *  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  L  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  H  A  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q   </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  N  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  G  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  W  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  *  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  G  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  *  S  A  *  N  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  T  E  T  I  R  K  D  V  V  Q  S  F  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  S  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  D  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  *  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  N  S  I  T  N  M  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  V  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  L  G  I  D  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  T  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  V  L  L  E  A  V  E  C  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  M  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  T  R  S  Q  T  C  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31113" stop="29872"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELASLEKREVFGPIIRTPEGIKPVGYKWVFVRKRNEKGEVMRYKARLVAQGFSQRLGIDYMETYSPVVDAITFRYLINLAVHEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKVLLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMMVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDMGLFYSNESKSELIGYADAGYLSDPHKTRSQTCYLFTCGDTAISWRSM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="32971" PGL_stop="32426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32971" e_stop="32426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="32971" e_stop="32426" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32971" stop="32426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32861" stop="32493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCTTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATATTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  L  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  F  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  F  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  V  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  I  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  Y  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  A  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32970" stop="32428"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCFLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPVFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="34267" PGL_stop="33505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34267" e_stop="33505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="34267" e_stop="33505" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34267" stop="33505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTATCTCATAATTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGCCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAAATTGAATATTTGACGGTAAAAGATCCACTTGAGTTGTGGACTGACTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCCCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTACAGCAACAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATTTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  Y  L  I  I  S  L  C  R  I  Y  P  N  L  S  L  C  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  K  L  *  F  S  F  V  I  I  L  M  R  A  *  K  L  N  I  *  R  *  K  I  H  L  S  C  G  L  T  *  R  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  P  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  S  M  P  Q  M  *  Y  Y  S  N  N  I  V  K  R  V  F  R  N  I  L  N  *  F  H  V  F  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  A  I  I  M  H  G  D  V  A  </first_frame>
            <second_frame>  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  D  S  H  I  I  S  *  F  H  Y  V  E  F  I  Q  T  *  V  C  A  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  S  Y  D  F  P  S  S  S  S  *  *  G  P  E  N  *  I  F  D  G  K  R  S  T  *  V  V  D  *  L  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  P  L  *  V  D  A  F  T  V  S  R  F  *  D  R  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  K  I  M  W  G  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  P  C  L  K  C  D  I  T  A  T  I  S  *  K  G  F  S  E  I  F  *  T  N  F  M  S  F  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  T  W  Q </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  L  S  H  N  F  I  M  S  N  L  S  K  L  E  F  V  P  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  D  P  L  E  L  W  T  D  L  K  G  R  Y  D  H  L  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34265" stop="33507"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVISTKLLLAKVLYKYFYLIHILSHNFIMSNLSKLEFVPLDISGKNYLSWVLDAEIHLAAKGLDATITQGNEASSQDKAKAMIFLRHHLDEGLKIEYLTVKDPLELWTDLKGRYDHLKATVLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDMLEKTLTTFHASNVILQQQYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="43831" PGL_stop="39828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43831" e_stop="43658"/>
            <exon e_start="43119" e_stop="42987"/>
            <exon e_start="41399" e_stop="41101"/>
            <exon e_start="40068" e_stop="39828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43831" e_stop="43658" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43657" i_stop="43120" i_length="538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43119" e_stop="42987" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.960">
            <gDNA_intron_boundary i_start="42986" i_stop="41400" i_length="1587"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41399" e_stop="41101" e_length="299"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41100" i_stop="40069" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="40068" e_stop="39828" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43831" stop="43658"/>
              <exon start="43119" stop="42987"/>
              <exon start="41399" stop="41101"/>
              <exon start="40068" stop="40052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43830" stop="43658"/>
              <exon start="43119" stop="42987"/>
              <exon start="41399" stop="41208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43820" stop="43658"/>
              <exon start="43119" stop="42987"/>
              <exon start="41399" stop="41212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43749" stop="43658"/>
              <exon start="43119" stop="42987"/>
              <exon start="41399" stop="41101"/>
              <exon start="40068" stop="39956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43085" stop="42987"/>
              <exon start="41399" stop="41101"/>
              <exon start="40068" stop="39828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG : GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG : GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG : GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTATTTGAAGT</gDNA_template>
            <first_frame> *  K  L  R  N  M  A  S  E  K  E  K  I  K  I  T  S  D  K  Y  R  L  F  L  H  E  D  Q  A  A  A  E  G  T  I  Q  W  R  H  G  D  A  P  S  Y  G  S  V  N  K  L  F  E  E  G  R  T  K  :  V  W  P  E  G  S  L  E  E  T  V  Q  N  A  I  K  S  W  E  M  E  L  S  H  K  T  R  V  K  D  F  R  T  I  N  P  Q  K  F  K  L  F  V  N   : G  R  D  G  L  S  A  E  E  T  L  K  V  G  S  Y  N  A  L  L  K  S  S  M  P  N  E  F  K  Y  Y  K  A  D  E  E  T  F  E  S  S  H  N  A  F  R  S  A  F  P  R  G  F  A  W  E  V  I  S  V  Y  T  G  P  P  I  I  T  Y  K  F  R  H  W  G  F  F  E  G  P  F  K  G  H  A  P  T  G  N  M  V  Q  F  Y  G  L  G  I  L  K  :  V  D  E  S  L  R  A  E  D  V  E  V  Y  Y  D  P  T  E  L  F  G  E  L  L  K  G  P  K  I  S  E  S  N  V  E  H  H  *  S  W  F  I  D  F  M  K  F  F  F  L  C  F  F  I  K  *  T  F  S  V  W  I  A  Q  Y  Y  N  T  M  L  Q  S  L  F  G  L  I  Y  L  K  </first_frame>
            <second_frame>  K  N  L  E  I  W  L  V  R  R  K  K  L  K  L  Q  V  I  S  I  G  Y  S  C  M  K  I  K  L  L  L  K  E  P  S  N  G  D  M  V  M  L  Q  V  M  E  V  L  I  N  S  L  K  K  E  G  L  R :   F  G  Q  K  D  L  L  K  K  Q  Y  K  M  L  *  N  H  G  K  W  N  F  H  I  R  L  E  *  K  T  L  G  Q  L  I  L  K  N  S  S  S  S  *  M  :  E  E  T  D  C  P  R  K  R  R  *  K  W  E  A  T  M  R  Y  *  R  V  Q  C  Q  M  N  S  N  I  T  K  Q  M  K  R  H  L  N  H  P  T  M  L  L  D  Q  L  F  Q  E  D  L  L  G  K  *  S  V  Y  T  Q  G  H  Q  L  L  H  T  N  S  D  I  G  V  S  L  K  V  H  L  K  D  M  P  L  L  A  T  W  S  N  S  M  A  L  V  Y  *  R :   L  M  N  H  *  E  Q  R  M  *  R  Y  I  M  I  Q  R  N  F  L  V  N  Y  S  K  D  Q  K  F  L  N  L  M  L  S  T  T  S  H  G  L  L  I  L  *  S  F  F  F  Y  V  F  S  *  N  K  L  S  L  F  G  S  H  N  I  T  I  Q  C  Y  K  V  C  L  D  *  F  I  *  S </second_frame>
            <third_frame>   K  T  *  K  Y  G  *  *  E  G  K  N  *  N  Y  K  *  *  V  *  A  I  L  A  *  R  S  S  C  C  *  R  N  H  P  M  E  T  W  *  C  S  K  L  W  K  C  *  *  T  L  *  R  R  K  D  *   : G  L  A  R  R  I  S  *  R  N  S  T  K  C  Y  K  I  M  G  N  G  T  F  T  *  D  *  S  K  R  L  *  D  N  *  S  S  K  I  Q  A  L  R  K  W :   K  R  R  I  V  R  G  R  D  V  E  S  G  K  L  Q  C  A  I  E  E  F  N  A  K  *  I  Q  I  L  Q  S  R  *  R  D  I  *  I  I  P  Q  C  F  *  I  S  F  S  K  R  I  C  L  G  S  D  Q  C  I  H  R  A  T  N  Y  Y  I  Q  I  Q  T  L  G  F  L  *  R  S  I  *  R  T  C  P  Y  W  Q  H  G  P  I  L  W  P  W  Y  I  E   : G  *  *  I  T  K  S  R  G  C  R  G  I  L  *  S  N  G  T  F  W  *  T  T  Q  R  T  K  N  F  *  I  *  C  *  A  P  L  V  M  V  Y  *  F  Y  E  V  F  F  F  M  F  F  H  K  I  N  F  L  C  L  D  R  T  I  L  Q  Y  N  V  T  K  F  V  W  I  D  L  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43828" stop="43658"/>
                    <exon start="43119" stop="42987"/>
                    <exon start="41399" stop="41101"/>
                    <exon start="40068" stop="39955"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRNMASEKEKIKITSDKYRLFLHEDQAAAEGTIQWRHGDAPSYGSVNKLFEEGRTKVWPEGSLEETVQNAIKSWEMELSHKTRVKDFRTINPQKFKLFVNGRDGLSAEETLKVGSYNALLKSSMPNEFKYYKADEETFESSHNAFRSAFPRGFAWEVISVYTGPPIITYKFRHWGFFEGPFKGHAPTGNMVQFYGLGILKVDESLRAEDVEVYYDPTELFGELLKGPKISESNVEHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="56395" PGL_stop="50842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56395" e_stop="56052"/>
            <exon e_start="54153" e_stop="54019"/>
            <exon e_start="53913" e_stop="53840"/>
            <exon e_start="52849" e_stop="52810"/>
            <exon e_start="52534" e_stop="52489"/>
            <exon e_start="51598" e_stop="51519"/>
            <exon e_start="51255" e_stop="51074"/>
            <exon e_start="50910" e_stop="50842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.958"/>
          <exon-intron don_prob="0.976" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.104" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="56395" e_stop="56052" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56051" i_stop="54154" i_length="1898"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54153" e_stop="54019" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.908">
            <gDNA_intron_boundary i_start="54018" i_stop="53914" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53913" e_stop="53840" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.104" acc_prob="0.941">
            <gDNA_intron_boundary i_start="53839" i_stop="52850" i_length="990"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52849" e_stop="52810" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52809" i_stop="52535" i_length="275"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52534" e_stop="52489" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52488" i_stop="51599" i_length="890"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51598" e_stop="51519" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.975">
            <gDNA_intron_boundary i_start="51518" i_stop="51256" i_length="263"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51255" e_stop="51074" e_length="182"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51073" i_stop="50911" i_length="163"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="50910" e_stop="50842" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56395" stop="56052"/>
              <exon start="54153" stop="54019"/>
              <exon start="53913" stop="53840"/>
              <exon start="52849" stop="52810"/>
              <exon start="52534" stop="52489"/>
              <exon start="51598" stop="51541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56387" stop="56052"/>
              <exon start="54153" stop="54019"/>
              <exon start="53913" stop="53892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56160" stop="56052"/>
              <exon start="54153" stop="54019"/>
              <exon start="53913" stop="53840"/>
              <exon start="52849" stop="52810"/>
              <exon start="52534" stop="52489"/>
              <exon start="51598" stop="51519"/>
              <exon start="51255" stop="51074"/>
              <exon start="50910" stop="50842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCCTCCCGCTCTTCTCTTCTCCCCCAAATTCTTCCCCAAAACTCTCAATTTTGAATTCAAAGTTGAACAATCGAAGAGAAATTTGTATACAAACAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTTGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCCGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT : GAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAAT : ATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG : GTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAG : GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG : AGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAG : TATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGA : ATTGCTTGAAAAGGATCCGTTCCACCTCAAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</gDNA_template>
            <first_frame> I  A  S  R  S  S  L  L  P  Q  I  L  P  Q  N  S  Q  F  *  I  Q  S  *  T  I  E  E  K  F  V  Y  K  Q  *  G  K  K  K  L  R  G  *  E  V  L  *  G  I  V  *  V  N  I  C  I  H  Q  L  S  S  L  L  I  K  *  L  Q  L  L  L  T  Q  P  I  Y  T  C  K  H  K  L  C  I  L  V  D  T  I  A  V  L  F  T  F  L  M  L  L  K  S  S  F  V  T  S  A  S  D  T  S  P  P  S  A  L :   K  N  *  R  S  G  I  N  A  F  *  C  W  V  M  L  K  W  M  N  M  V  I  L  L  I  Q  E  S  S  T  A  C  T  W  T  R  M  V  K  I  V  K  *  I :   F  Y  Q  Q  S  A  F  *  G  A  R  H  M  K  R  W  R  I  V  H  R  L  D  Y   : G  I  K  L  L  S  R  L  I  L  C  V  M  R :   H  W  N  V  *  *  R  I  T  C  S  L  V  M  K  :  R  E  P  C  S  H  V  C  S  L  V  L  K  M  G  G  F  L  H  S  I  L  V  *  *  R  S :   M  I  K  K  M  W  W  K  L  N  L  E  S  W  N  R  V  D  L  I  Q  S  F  R  T  N  L  F  C  V  R  L  N  P  T  L  I  F  *  P  A  K  L  S  I  I  I  N  A  V  N  I  R  N  A  L  N  *  H  L   : N  C  L  K  R  I  R  S  T  S  S  V  P  W  C  T  *  Q  Q  Q  W  S  W  </first_frame>
            <second_frame>  *  P  P  A  L  L  F  S  P  K  F  F  P  K  T  L  N  F  E  F  K  V  E  Q  S  K  R  N  L  Y  T  N  N  E  G  R  R  N  *  E  A  K  R  C  C  E  G  L  C  E  *  T  F  V  F  I  S  Y  L  L  C  *  *  S  S  C  N  Y  F  *  P  S  R  Y  I  H  A  S  T  S  F  V  S  W  S  T  L  S  P  C  F  S  P  S  *  C  F  S  N  R  P  S  *  P  P  L  P  I  P  R  R  Q  V  P   : *  R  T  E  G  V  G  S  M  P  S  N  A  G  *  C  *  S  G  *  T  W  *  Y  Y  *  Y  K  R  V  Q  Q  H  V  L  G  Q  G  W  *  R  S  *  N  K   : Y  F  I  S  N  L  L  F  E  G  Q  G  I  *  S  V  G  E  S  C  T  G  S  T  M  :  V  *  S  C  Y  Q  G  *  S  F  V  L  *   : G  I  G  M  S  D  R  E  S  H  A  H  L  *  *  R :   E  N  P  A  L  M  F  A  V  W  S  *  R  W  V  A  F  F  I  L  F  L  F  D  K  E   : V  *  *  R  K  C  G  G  S  *  I  *  R  A  G  T  E  W  T  *  Y  K  A  F  G  Q  I  C  F  V  Y  A  *  I  Q  L  *  S  F  S  L  Q  S  *  V  L  S  S  M  R  *  I  S  E  M  L  *  T  N  I  *  :  I  A  *  K  G  S  V  P  P  Q  V  Y  P  G  A  L  S  S  S  N  G  V  G </second_frame>
            <third_frame>   S  L  P  L  F  S  S  P  P  N  S  S  P  K  L  S  I  L  N  S  K  L  N  N  R  R  E  I  C  I  Q  T  M  R  E  E  E  I  E  R  L  R  G  V  V  R  D  C  V  S  K  H  L  Y  S  S  A  I  F  F  A  D  K  V  A  A  I  T  S  D  P  A  D  I  Y  M  Q  A  Q  A  L  Y  L  G  R  H  Y  R  R  A  F  H  L  L  N  A  S  Q  I  V  L  R  D  L  R  F  R  Y  L  A  A  K  C  L  :  E  E  L  K  E  W  D  Q  C  L  L  M  L  G  D  A  K  V  D  E  H  G  N  I  T  D  T  R  E  F  N  S  M  Y  L  D  K  D  G  E  D  R  E  I  N  :  I  L  S  A  I  C  F  L  R  G  K  A  Y  E  A  L  E  N  R  A  Q  A  R  L  W :   Y  K  A  A  I  K  A  D  P  L  C  Y  E  :  A  L  E  C  L  I  E  N  H  M  L  T  C  D  E   : E  R  T  L  L  S  C  L  Q  F  G  P  E  D  G  W  L  S  S  F  Y  S  C  L  I  K  K  :  Y  D  K  E  N  V  V  E  A  K  F  R  E  L  E  Q  S  G  P  N  T  K  L  S  D  K  S  V  L  C  T  L  K  S  N  S  D  L  L  A  C  K  A  E  Y  Y  H  Q  C  G  E  Y  Q  K  C  F  E  L  T  S  E :   L  L  E  K  D  P  F  H  L  K  C  T  L  V  H  L  A  A  A  M  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56393" stop="56052"/>
                    <exon start="54153" stop="54019"/>
                    <exon start="53913" stop="53840"/>
                    <exon start="52849" stop="52810"/>
                    <exon start="52534" stop="52489"/>
                    <exon start="51598" stop="51519"/>
                    <exon start="51255" stop="51074"/>
                    <exon start="50910" stop="50844"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPLFSSPPNSSPKLSILNSKLNNRREICIQTMREEEIERLRGVVRDCVSKHLYSSAIFFADKVAAITSDPADIYMQAQALYLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEELKEWDQCLLMLGDAKVDEHGNITDTREFNSMYLDKDGEDREINILSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCDEERTLLSCLQFGPEDGWLSSFYSCLIKKYDKENVVEAKFRELEQSGPNTKLSDKSVLCTLKSNSDLLACKAEYYHQCGEYQKCFELTSELLEKDPFHLKCTLVHLAAAMEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="57278" PGL_stop="57939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57278" e_stop="57939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="57278" e_stop="57939" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57278" stop="57939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTTGAACAATTTAGGAATGCGAAAATGGAGAAAGTGAAAAAGGTATCATCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTTGGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAGGAATTCAGCCAAATGTGGTGACTTTTGGGACGTTGATTAATGGGCTTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</gDNA_template>
            <first_frame> F  I  *  T  I  *  E  C  E  N  G  E  S  E  K  G  I  I  F  Q  S  L  F  S  T  S  P  A  K  R  C  *  N  R  P  S  T  L  P  *  S  *  S  Q  P  W  K  R  Q  N  Y  *  T  F  S  L  F  S  T  L  L  *  S  H  H  L  Q  A  R  Q  R  *  T  L  S  R  N  G  K  N  H  R  *  I  E  T  G  H  S  S  F  S  Q  R  S  C  F  L  Q  C  Y  F  F  L  W  K  S  T  F  T  *  *  G  S  S  Y  V  *  *  N  T  L  F  S  L  L  *  K  Y  K  I  C  *  *  L  V  E  C  T  F  S  L  *  R  I  Q  Q  D  W  *  N  V  K  Q  L  *  K  L  R  N  P  R  C  L  Y  V  *  Y  I  D  E  C  V  L  F  V  W  *  F  G  W  C  T  G  G  V  *  *  N  V  *  E  R  N  S  A  K  C  G  D  F  W  D  V  D  *  W  A  L  C  E  S  R  N  *  R  G  V  *  D   </first_frame>
            <second_frame>  S  F  E  Q  F  R  N  A  K  M  E  K  V  K  K  V  S  S  F  S  L  S  S  L  L  R  Q  Q  K  D  A  K  I  A  L  Q  L  F  L  N  P  N  P  S  H  G  S  D  K  T  T  K  P  F  R  Y  S  P  L  C  Y  D  L  I  I  C  K  L  G  R  G  K  L  F  Q  E  M  E  K  I  I  D  K  L  R  Q  D  T  R  V  S  L  N  E  V  V  F  C  N  V  I  S  F  Y  G  R  A  H  L  P  D  K  A  L  H  M  F  N  E  I  P  S  F  R  C  Y  R  S  I  K  S  V  N  S  L  L  N  A  L  L  A  C  K  E  Y  S  K  I  G  E  M  L  N  N  F  E  N  Y  A  T  P  D  V  C  T  F  N  I  L  M  N  A  C  C  L  C  G  D  L  G  G  A  R  E  V  F  D  E  M  C  E  R  G  I  Q  P  N  V  V  T  F  G  T  L  I  N  G  L  C  V  N  R  E  I  N  E  A  F  R  M  </second_frame>
            <third_frame>   H  L  N  N  L  G  M  R  K  W  R  K  *  K  R  Y  H  L  S  V  S  L  L  Y  F  A  S  K  K  M  L  K  S  P  F  N  S  S  L  I  L  I  P  A  M  E  A  T  K  L  L  N  L  F  V  I  L  H  S  V  M  I  S  S  S  A  S  S  A  E  V  N  S  F  K  K  W  K  K  S  S  I  N  *  D  R  T  L  E  F  L  S  T  K  L  F  S  A  M  L  F  L  F  M  E  E  H  I  Y  L  I  R  L  F  I  C  L  M  K  Y  P  L  F  A  A  I  E  V  *  N  L  L  I  A  C  *  M  H  F  *  L  V  K  N  T  A  R  L  V  K  C  *  T  T  L  K  I  T  Q  P  Q  M  F  V  R  L  I  Y  *  *  M  R  V  V  C  V  V  I  W  V  V  H  G  R  C  L  M  K  C  V  R  E  E  F  S  Q  M  W  *  L  L  G  R  *  L  M  G  F  V  *  I  E  K  L  T  R  R  L  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57279" stop="57938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFEQFRNAKMEKVKKVSSFSLSSLLRQQKDAKIALQLFLNPNPSHGSDKTTKPFRYSPLCYDLIICKLGRGKLFQEMEKIIDKLRQDTRVSLNEVVFCNVISFYGRAHLPDKALHMFNEIPSFRCYRSIKSVNSLLNALLACKEYSKIGEMLNNFENYATPDVCTFNILMNACCLCGDLGGAREVFDEMCERGIQPNVVTFGTLINGLCVNREINEAFRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="72485" PGL_stop="68810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72485" e_stop="72475"/>
            <exon e_start="72365" e_stop="72300"/>
            <exon e_start="72102" e_stop="72043"/>
            <exon e_start="71929" e_stop="71888"/>
            <exon e_start="71790" e_stop="71741"/>
            <exon e_start="71556" e_stop="71189"/>
            <exon e_start="71048" e_stop="70853"/>
            <exon e_start="70772" e_stop="70629"/>
            <exon e_start="70299" e_stop="70181"/>
            <exon e_start="70002" e_stop="69792"/>
            <exon e_start="69706" e_stop="69469"/>
            <exon e_start="69340" e_stop="69190"/>
            <exon e_start="69098" e_stop="68810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.288" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.959" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.894" e_score="0.993"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72485" e_stop="72475" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.826">
            <gDNA_intron_boundary i_start="72474" i_stop="72366" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72365" e_stop="72300" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.288" acc_prob="0.989">
            <gDNA_intron_boundary i_start="72299" i_stop="72103" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72102" e_stop="72043" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.933">
            <gDNA_intron_boundary i_start="72042" i_stop="71930" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="71929" e_stop="71888" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71887" i_stop="71791" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71790" e_stop="71741" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71740" i_stop="71557" i_length="184"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="71556" e_stop="71189" e_length="368"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71188" i_stop="71049" i_length="140"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71048" e_stop="70853" e_length="196"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70852" i_stop="70773" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70772" e_stop="70629" e_length="144"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.880">
            <gDNA_intron_boundary i_start="70628" i_stop="70300" i_length="329"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70299" e_stop="70181" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70180" i_stop="70003" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="70002" e_stop="69792" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.953" acc_prob="0.956">
            <gDNA_intron_boundary i_start="69791" i_stop="69707" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="0.966">
            <gDNA_exon_boundary e_start="69706" e_stop="69469" e_length="238"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69468" i_stop="69341" i_length="128"/>
          </intron>
          <exon e_serial="12" e_score="0.993">
            <gDNA_exon_boundary e_start="69340" e_stop="69190" e_length="151"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.894">
            <gDNA_intron_boundary i_start="69189" i_stop="69099" i_length="91"/>
          </intron>
          <exon e_serial="13" e_score="0.917">
            <gDNA_exon_boundary e_start="69098" e_stop="68810" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72485" stop="72475"/>
              <exon start="72365" stop="72300"/>
              <exon start="72102" stop="72043"/>
              <exon start="71929" stop="71888"/>
              <exon start="71790" stop="71741"/>
              <exon start="71556" stop="71226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71474" stop="71189"/>
              <exon start="71048" stop="70853"/>
              <exon start="70772" stop="70629"/>
              <exon start="70299" stop="70263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71314" stop="71189"/>
              <exon start="71048" stop="70853"/>
              <exon start="70772" stop="70629"/>
              <exon start="70299" stop="70181"/>
              <exon start="70002" stop="69956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71009" stop="70853"/>
              <exon start="70772" stop="70629"/>
              <exon start="70299" stop="70181"/>
              <exon start="70002" stop="69792"/>
              <exon start="69706" stop="69626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70994" stop="70853"/>
              <exon start="70772" stop="70629"/>
              <exon start="70299" stop="70181"/>
              <exon start="70002" stop="69794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70749" stop="70629"/>
              <exon start="70299" stop="70181"/>
              <exon start="70002" stop="69792"/>
              <exon start="69706" stop="69511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70236" stop="70181"/>
              <exon start="70002" stop="69792"/>
              <exon start="69706" stop="69469"/>
              <exon start="69340" stop="69190"/>
              <exon start="69098" stop="69085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70236" stop="70181"/>
              <exon start="70002" stop="69792"/>
              <exon start="69706" stop="69469"/>
              <exon start="69340" stop="69190"/>
              <exon start="69098" stop="69087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69829" stop="69792"/>
              <exon start="69706" stop="69469"/>
              <exon start="69340" stop="69190"/>
              <exon start="69098" stop="68810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATAACAT : GTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACAT : GGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTT : AAACTTAGCTGCTAGCTACTCCGATACAATGAACAACACCAC : GGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAAT : ATACTTCACTATTCATAAACTGCGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAA : GGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA : ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG : AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG : GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG : GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT : AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGG : GCTTACGTCCTACAAGAACAGGGAAATCTGTTAGAACTAGTTGATCCACGTCTCGGTACCAATTACTCCAAAAAAGAGGCAATGCGGATGATAAACGTGTCTCTTTTGTGCACGAATCCCTCTCCTACTCTCCGACCATCCATGTCTTCTGTAGTGAGTATGCTCGAAGGAAAACTCCCCGTGCAAGCACCAATAATCAAACGTACTACATCAGACGATGAAATGAGATTTAAATCGTTCGAGAAGCTTTCACATGACAGTCAAACAACACAAGTATCAACATACTCTC</gDNA_template>
            <first_frame> F  D  N  M :   F  L  G  N  N  A  L  S  G  A  I  P  S  W  M  F  S  K  R  E  N  M :   D  M  S  Y  N  N  F  T  Q  I  S  T  P  V  C  D  S  S  T  L :   N  L  A  A  S  Y  S  D  T  M  N  N  T  T :   D  A  W  C  S  M  K  P  L  I  C  P  T  D  T  K   : Y  T  S  L  F  I  N  C  G  G  P  R  T  S  F  E  G  N  N  Y  E  A  D  T  T  N  R  G  P  S  Y  F  S  S  P  S  D  R  W  A  F  S  S  S  G  V  Y  V  G  L  Q  A  A  S  Y  I  A  S  N  T  F  S  L  D  V  S  G  P  D  F  Y  N  T  A  R  L  A  P  N  S  L  K  Y  Y  G  L  C  L  Q  G  G  S  Y  R  V  R  L  H  F  A  E  I  M  F  S  N  D  S  T  Y  S  S  L  G  R  R  I  F  D  V  A  I  Q  :  G  R  V  V  L  R  D  F  N  I  M  E  E  A  N  G  V  G  K  V  I  T  K  D  F  P  D  V  T  V  S  S  T  L  E  I  H  L  Y  W  T  G  K  G  T  N  A  I  P  D  R  G  V  Y  G  P  L  I  S  A  I  T  V  T  P   : N  F  R  V  D  T  G  S  G  L  P  V  G  A  V  I  G  I  V  L  A  S  I  V  V  L  L  L  V  L  F  A  L  W  K  K  G  I  F  G  G  K  N  N  Q  E  E  L   : E  L  R  A  L  D  L  Q  T  G  H  F  R  L  R  Q  I  K  A  A  T  N  N  F  D  P  A  N  K  I  G  E  G  G  F  G  P  V  Y  K  :  G  V  L  A  D  G  A  I  I  A  V  K  Q  L  S  S  K  S  K  Q  G  N  R  E  F  V  N  E  I  G  M  I  S  A  L  Q  H  P  N  L  V  K  L  Y  G  C  C  I  E  G  N  Q  L  L  V  I  Y  E  Y  M  E  N  N  C  L  A  R  A  L  F   : G  R  D  D  Q  R  L  N  I  D  W  A  T  R  K  R  I  C  S  G  I  A  K  G  L  A  Y  L  H  E  E  S  R  L  K  I  V  H  R  D  I  K  C  T  N  V  L  L  D  K  D  L  N  A  K  I  S  D  F  G  L  A  K  L  D  E  E  E  N  T  H  I  S  T  R  I  A  G  T  V :   G  Y  M  A  P  E  Y  A  M  R  G  Y  L  T  D  K  A  D  V  Y  S  F  G  V  V  L  L  E  I  V  S  G  K  S  N  T  N  Y  R  P  K  E  E  F  V  Y  L  L  D  W  :  A  Y  V  L  Q  E  Q  G  N  L  L  E  L  V  D  P  R  L  G  T  N  Y  S  K  K  E  A  M  R  M  I  N  V  S  L  L  C  T  N  P  S  P  T  L  R  P  S  M  S  S  V  V  S  M  L  E  G  K  L  P  V  Q  A  P  I  I  K  R  T  T  S  D  D  E  M  R  F  K  S  F  E  K  L  S  H  D  S  Q  T  T  Q  V  S  T  Y  S  </first_frame>
            <second_frame>  L  I  T   : C  F  L  V  T  M  H  *  A  E  Q  F  P  A  G  C  L  V  K  E  R  T   : W  I  C  H  T  T  I  S  H  K  Y  L  L  Q  Y  A  I  P  L  P   : *  T  *  L  L  A  T  P  I  Q  *  T  T  P   : R  M  P  G  V  L  *  N  P  S  F  V  P  Q  T  R  N  :  I  L  H  Y  S  *  T  A  E  D  L  E  L  H  L  R  E  I  I  M  R  Q  T  R  P  I  E  V  R  H  I  F  L  R  P  L  T  D  G  L  S  A  V  Q  E  C  T  W  V  F  K  L  P  V  I  L  H  Q  I  H  F  H  W  M  C  P  V  L  T  S  T  I  Q  H  A  L  P  L  I  P  S  N  I  M  G  F  A  Y  K  E  V  A  T  E  C  A  F  T  L  L  K  *  C  F  L  M  T  Q  H  I  A  A  L  E  G  G  Y  L  M  *  Q  Y  K :   G  E  *  F  *  G  I  S  T  L  W  R  K  L  T  V  L  G  K  S  L  P  R  T  F  L  M  L  L  L  V  A  L  W  R  F  I  C  I  G  P  G  R  G  L  T  L  F  Q  T  E  V  Y  M  D  H  *  F  Q  L  S  Q  *  H  Q  :  T  L  E  L  T  L  V  V  A  Y  L  L  E  L  L  S  A  L  Y  S  L  Q  L  *  C  F  C  *  F  Y  L  L  C  G  R  K  A  F  L  E  G  K  I  T  K  K  N  *  :  N  S  E  P  L  I  Y  K  Q  V  I  L  D  L  D  K  L  K  L  L  L  I  T  L  I  L  P  T  K  L  V  K  E  G  L  D  Q  F  T  R :   V  Y  S  P  M  V  P  S  *  L  L  S  S  C  L  P  S  Q  S  K  E  I  V  N  L  S  M  R  *  A  *  F  Q  L  Y  N  T  Q  T  L  S  S  F  T  V  V  A  *  K  G  T  S  Y  *  *  Y  T  N  T  W  K  I  T  V  L  L  E  L  S  L  :  A  V  T  I  R  D  *  T  *  T  G  Q  P  E  K  G  Y  A  Q  E  *  Q  K  G  *  L  T  F  M  K  N  Q  G  *  K  S  S  I  E  I  *  S  V  R  M  C  F  L  I  R  I  *  T  R  R  F  Q  I  L  D  W  L  N  *  M  K  K  R  T  L  I  L  A  P  E  L  L  E  Q   : *  V  I  W  L  R  S  M  Q  *  E  A  T  *  Q  I  K  L  M  F  I  A  L  E  L  F  Y  *  R  L  S  V  G  K  A  T  Q  T  T  D  Q  K  R  N  L  F  T  F  L  T  G :   L  T  S  Y  K  N  R  E  I  C  *  N  *  L  I  H  V  S  V  P  I  T  P  K  K  R  Q  C  G  *  *  T  C  L  F  C  A  R  I  P  L  L  L  S  D  H  P  C  L  L  *  *  V  C  S  K  E  N  S  P  C  K  H  Q  *  S  N  V  L  H  Q  T  M  K  *  D  L  N  R  S  R  S  F  H  M  T  V  K  Q  H  K  Y  Q  H  T  L </second_frame>
            <third_frame>   *  *  H  :  V  S  W  *  Q  C  I  K  R  S  N  S  Q  L  D  V  *  *  K  R  E  H  :  G  Y  V  I  Q  Q  F  H  T  N  I  Y  S  S  M  R  F  L  Y  L  :  K  L  S  C  *  L  L  R  Y  N  E  Q  H  H  :  G  C  L  V  F  Y  E  T  P  H  L  S  H  R  H  E  I :   Y  F  T  I  H  K  L  R  R  T  *  N  F  I  *  G  K  *  L  *  G  R  H  D  Q  *  R  S  V  I  F  F  F  A  L  *  Q  M  G  F  Q  Q  F  R  S  V  R  G  S  S  S  C  Q  L  Y  C  I  K  Y  I  F  T  G  C  V  R  S  *  L  L  Q  Y  S  T  P  C  P  *  F  P  Q  I  L  W  A  L  P  T  R  R  *  L  Q  S  A  P  S  L  C  *  N  N  V  F  *  *  L  N  I  *  Q  P  W  K  A  D  I  *  C  S  N  T   : R  E  S  S  F  E  G  F  Q  H  Y  G  G  S  *  R  C  W  E  S  H  Y  Q  G  L  S  *  C  Y  C  *  *  H  S  G  D  S  F  V  L  D  R  E  G  D  *  R  Y  S  R  Q  R  C  I  W  T  T  D  F  S  Y  H  S  D  T  K :   L  *  S  *  H  W  *  W  L  T  C  W  S  C  Y  R  H  C  T  R  F  N  C  S  A  S  A  S  F  I  C  S  V  E  E  R  H  F  W  R  E  K  *  P  R  R  I  R :   T  Q  S  P  *  F  T  N  R  S  F  *  T  *  T  N  *  S  C  Y  *  *  L  *  S  C  Q  Q  N  W  *  R  R  V  W  T  S  L  Q   : G  C  T  R  R  W  C  H  H  S  C  *  A  A  V  F  Q  V  K  A  R  K  S  *  I  C  Q  *  D  R  H  D  F  S  S  T  T  P  K  P  C  Q  A  L  R  L  L  H  R  R  E  P  V  I  S  D  I  R  I  H  G  K  *  L  S  C  S  S  S  L  W :   P  *  R  S  E  I  K  H  R  L  G  N  Q  K  K  D  M  L  R  N  S  K  R  V  S  L  P  S  *  R  I  K  V  E  N  R  P  *  R  Y  K  V  Y  E  C  A  S  *  *  G  S  E  R  E  D  F  R  F  W  I  G  *  I  R  *  R  R  E  H  S  Y  *  H  P  N  C  W  N  S  :  R  L  Y  G  S  G  V  C  N  E  R  L  L  D  R  *  S  *  C  L  *  L  W  S  C  F  I  R  D  C  Q  W  E  K  Q  H  K  L  Q  T  K  R  G  I  C  L  P  S  *  L   : G  L  R  P  T  R  T  G  K  S  V  R  T  S  *  S  T  S  R  Y  Q  L  L  Q  K  R  G  N  A  D  D  K  R  V  S  F  V  H  E  S  L  S  Y  S  P  T  I  H  V  F  C  S  E  Y  A  R  R  K  T  P  R  A  S  T  N  N  Q  T  Y  Y  I  R  R  *  N  E  I  *  I  V  R  E  A  F  T  *  Q  S  N  N  T  S  I  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72485" stop="72475"/>
                    <exon start="72365" stop="72300"/>
                    <exon start="72102" stop="72043"/>
                    <exon start="71929" stop="71888"/>
                    <exon start="71790" stop="71741"/>
                    <exon start="71556" stop="71189"/>
                    <exon start="71048" stop="70853"/>
                    <exon start="70772" stop="70629"/>
                    <exon start="70299" stop="70181"/>
                    <exon start="70002" stop="69792"/>
                    <exon start="69706" stop="69469"/>
                    <exon start="69340" stop="69190"/>
                    <exon start="69098" stop="68811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1944</number_coding_nucleotides>
                  <number_encoded_amino_acids>648</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDNMFLGNNALSGAIPSWMFSKRENMDMSYNNFTQISTPVCDSSTLNLAASYSDTMNNTTDAWCSMKPLICPTDTKYTSLFINCGGPRTSFEGNNYEADTTNRGPSYFSSPSDRWAFSSSGVYVGLQAASYIASNTFSLDVSGPDFYNTARLAPNSLKYYGLCLQGGSYRVRLHFAEIMFSNDSTYSSLGRRIFDVAIQGRVVLRDFNIMEEANGVGKVITKDFPDVTVSSTLEIHLYWTGKGTNAIPDRGVYGPLISAITVTPNFRVDTGSGLPVGAVIGIVLASIVVLLLVLFALWKKGIFGGKNNQEELELRALDLQTGHFRLRQIKAATNNFDPANKIGEGGFGPVYKGVLADGAIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLVIYEYMENNCLARALFGRDDQRLNIDWATRKRICSGIAKGLAYLHEESRLKIVHRDIKCTNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGVVLLEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPRLGTNYSKKEAMRMINVSLLCTNPSPTLRPSMSSVVSMLEGKLPVQAPIIKRTTSDDEMRFKSFEKLSHDSQTTQVSTYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="77879" PGL_stop="75355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77879" e_stop="77803"/>
            <exon e_start="77711" e_stop="77561"/>
            <exon e_start="75388" e_stop="75355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.982" e_score="0.909"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="0.907"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="77879" e_stop="77803" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.982">
            <gDNA_intron_boundary i_start="77802" i_stop="77712" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="77711" e_stop="77561" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="77560" i_stop="75389" i_length="2172"/>
          </intron>
          <exon e_serial="3" e_score="0.912">
            <gDNA_exon_boundary e_start="75388" e_stop="75355" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77879" stop="77803"/>
              <exon start="77711" stop="77561"/>
              <exon start="75388" stop="75355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCTTATCTCCTCCCTTTTCTCCATTCCCGCCTTTCATTTCAAGGCTTCAACAACTTGAACACATTCTTCATTAATT : CATTCGAGACTACACAACTTGAAAAAATTGAATTTCTTCGACTGAACAATAATGGATGCTACTTGTATCAGATTTTGTGTTATATTTCTCTTTCTATATCTGCTTTCTACATTCAGATCTGTTGACGCTCAACTTTTGCCAGAAGATGAAG : TAAGAGTTCTGCAAACAATATCATCGAAACTTCA</gDNA_template>
            <first_frame> R  L  S  P  P  F  S  P  F  P  P  F  I  S  R  L  Q  Q  L  E  H  I  L  H  *  F :   I  R  D  Y  T  T  *  K  N  *  I  S  S  T  E  Q  *  W  M  L  L  V  S  D  F  V  L  Y  F  S  F  Y  I  C  F  L  H  S  D  L  L  T  L  N  F  C  Q  K  M  K  :  *  E  F  C  K  Q  Y  H  R  N  F  </first_frame>
            <second_frame>  A  Y  L  L  P  F  L  H  S  R  L  S  F  Q  G  F  N  N  L  N  T  F  F  I  N   : S  F  E  T  T  Q  L  E  K  I  E  F  L  R  L  N  N  N  G  C  Y  L  Y  Q  I  L  C  Y  I  S  L  S  I  S  A  F  Y  I  Q  I  C  *  R  S  T  F  A  R  R  *  S :   K  S  S  A  N  N  I  I  E  T  S </second_frame>
            <third_frame>   L  I  S  S  L  F  S  I  P  A  F  H  F  K  A  S  T  T  *  T  H  S  S  L  I  :  H  S  R  L  H  N  L  K  K  L  N  F  F  D  *  T  I  M  D  A  T  C  I  R  F  C  V  I  F  L  F  L  Y  L  L  S  T  F  R  S  V  D  A  Q  L  L  P  E  D  E   : V  R  V  L  Q  T  I  S  S  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0020C08.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77878" stop="77803"/>
                    <exon start="77711" stop="77587"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLLPFLHSRLSFQGFNNLNTFFINSFETTQLEKIEFLRLNNNGCYLYQILCYISLSISAFYIQIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 244 chains have been computed
$ 
$ memory statistics:
$ 141928 bytes spliced alignments in total
$ 65 spliced alignments have been stored
$ 2183 bytes was the average size of a spliced alignment
$ 24504 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1531 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 289 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:19:59
-->
