<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:30:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587781" ref_strand="+" ref_description="SGN-U587781 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|22329697|ref|NP_683316.1| (e_value=7e-50) auxin efflux carrier protein family [Arabidopsis thaliana]; (*ATH) AT1G20925.1 (e_value=5e-52) | Symbol: None | auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 | chr1:7290601-7292496 FORWARD | Aliases: None; ">
      <seq>aagtttccttcctattaatttcgaagttctaaagatcgtggttctcgaatgagcaatagaacaaaaattcaggcgtattgtaatacgtaaacagatactcaaatttggtcttagctgacaagtaagcatccgaactttgagagtgcacgtgtagacgactcaacttgatcctctgtttcatcgttcacacgaaaggaactcgatatggggcttttagatctgttagttgcagcatcaatgccagttattcaaattcttttgataacagcacttggactagttcttgcattagatcgattcgccatacttggagaggatgcaaggaagcatttgaataatattgtgttttacatatgcaatccatcactgatttcaagcaacttatccaaaacaattacatacgagagcatgaaacgattgtggttcatgcctttgaatatcttcatcacttttatcgtaggttcgattcttgcttggattgtcaatcaaataacaagacctcctaaacatctacgaggcctcgttataggctgctgtgctgcaggaaacatgggcaacatgcttctcatcatagttccagctgtttgtaaggagaaaggaagcccattcggagcgcctgatatttgccatacatatgggatgggctatgcttccctttcaatggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="17741" stop="20050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18041" g_stop="18112" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18113" i_stop="18447" i_length="335">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18448" g_stop="18714" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="339" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18715" i_stop="19018" i_length="304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19019" g_stop="19098" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="419" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19099" i_stop="19180" i_length="82">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19181" g_stop="19305" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="544" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19306" i_stop="19627" i_length="322">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.214" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19628" g_stop="19749" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="666" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U587781" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18041" e_stop="18112"/>
          <exon e_start="18448" e_stop="18714"/>
          <exon e_start="19019" e_stop="19098"/>
          <exon e_start="19181" e_stop="19305"/>
          <exon e_start="19628" e_stop="19749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCCTTCCTATTAATTTCGAAGTTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAGGTAAAATTTACTTTTTGGTTAACTTCAGTAAAATTGGATGACTTTACTTATGTGTGATAAACTTTAAAGTTAGATAACTTTTATGTGATATAAAATAAATAAGTTATTAGTAAATTCACTTGTGTGGAATAAATATTCCTTCCTATTAATATCATAGTTCGAAATGATTTAGTTTCAGAGCTAAAGATTGTAGTTCTCGAACGAGTAATAGAAAAGATTTTGAAGCATTTTAAGTAGTTAATTTGCATTTTTTAGTTTTTCTTTAATTGTTTGTAAATTCTATTATTGAGTTTCAGTATCATTGTATGATGTATTTTGATTTGTTTTTTTAAAAGGCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAATGTGAGTATATAATATACCTTTCTTGTTGTGTAGTTTGCTCGTTGATTCCCATTTTACTCGTGTTACTTGTACGTGAATTTGTTAGTTTATTCTGTCCTCTGCACTAGTACCATGACCTTTAAAGAGCGGAAAATTATACTGTTTATAGTAGATAGTTGATGTTGAAACCTCTTCAGCTTCTTCGTGTGTTTATTTCTTCATATTTTGAAGAGTTGTTCACCAAGGCTAGAACAGACGAGAAGAATCACCTAGTGTTCTGTCATAGGATATTGATGTTTCCTGTTGTGTACTTTTCGATGAACAGATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATTGTGAGTTTTCGAGATTTCTAATCTCATGTGTTGTTATGTGTTACCCTGTATGTGCCCCCATTAACTCAGTTTGTTATTGTAGGTGGTTCATGCCTTTGAATATCTTCGTCACTTTTATCGTAGGTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAGGTATGTATAAACAGAAAGAACATCAGTCACGAAGACGATGCTTGTAATTGATTTTCCTCAGTTTTCATGTTATGCGGCAACTTCACATTAGTATTCTCGCCAAAATTATGTATTCCCTTCGTTTCAATTTGTTTGTCATACTTTTTGTGTTAGTCCATGACAGGTTTAAGACCACGAGAATGAAGAACATTTTGATACATTCTACGTATCCTTAGTTTATGACCTTTCTTGCTTTCTCAAAATCCCGTGTAAAGTTAAATCCAGACAAACATAAGTCTTCTCTTACTTTCTCCACGTAATTTTGCGCCTGCAATGTGGACAGGAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG</genome_strand>
        <mrna_strand>AAGTTTCCTTCCTATTAATTTCGAAGTTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAG...............................................................................................................................................................................................................................................................................................................................................GCGTATTGTAATACGTAAACAGATACTCAAATTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAAT................................................................................................................................................................................................................................................................................................................ATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATT..................................................................................GTGGTTCATGCCTTTGAATATCTTCATCACTTTTATCGTAGGTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAG..................................................................................................................................................................................................................................................................................................................................GAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U585744" ref_strand="+" ref_description="SGN-U585744 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157359781|emb|CAO68503.1| (e_value=4e-34) unnamed; (*ATH) AT1G76520.2 (e_value=9e-45) | Symbol: None | auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 | chr1:28720049-28722308 FORWARD | Aliases: None; ">
      <seq>gtctctctctctctctctctctctctctctctctctctaaagatcgtggttctcgaatgagcaatagaacaaaaattcaggcgtattgtaatacgtaaacagatactcaaacttggtcttagctgacaagtaagcatccgaactttgagagtgcacgtgtagacgactcaacttgatcctctgtttcatcgttcacacgaaaggaactcgatatggggcttttagatctgttagttgcagcatcaatgccagttattcaaattcttttgataacagcacttggactagttcttgcattagatcgattcgccatacttggagaggatgcaaggaagcatttgaataatattgtgttttacatatgcaatccatcactgatttcaagcaacttatccaaaacaattacatacgagagcatgaaacgattgttcgattcttgcttggattgtcaatcaaataacaagacctcctaaacatctacgaggcctcgttataggctgctgtgctgcaggaaacatgggcaacatgcttctcatcatagttccagctgtttgtaaggagaaaggaagcccattcggagcgcctgatatttgccatacatatgggatgggctatgcttccctttcaatggcggtatgcgcggtttttctatggtcttatgtgtataatattgncagaatatcatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="17768" stop="20355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18067" g_stop="18112" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="80" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18113" i_stop="18447" i_length="335">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18448" g_stop="18714" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="347" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18715" i_stop="19018" i_length="304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19019" g_stop="19098" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="427" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19099" i_stop="19221" i_length="123">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19222" g_stop="19305" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="511" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19306" i_stop="19627" i_length="322">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.214" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19628" g_stop="19749" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="633" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19750" i_stop="19998" i_length="249">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19999" g_stop="20055" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="690" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U585744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18067" e_stop="18112"/>
          <exon e_start="18448" e_stop="18714"/>
          <exon e_start="19019" e_stop="19098"/>
          <exon e_start="19222" e_stop="19305"/>
          <exon e_start="19628" e_stop="19749"/>
          <exon e_start="19999" e_stop="20055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAGGTAAAATTTACTTTTTGGTTAACTTCAGTAAAATTGGATGACTTTACTTATGTGTGATAAACTTTAAAGTTAGATAACTTTTATGTGATATAAAATAAATAAGTTATTAGTAAATTCACTTGTGTGGAATAAATATTCCTTCCTATTAATATCATAGTTCGAAATGATTTAGTTTCAGAGCTAAAGATTGTAGTTCTCGAACGAGTAATAGAAAAGATTTTGAAGCATTTTAAGTAGTTAATTTGCATTTTTTAGTTTTTCTTTAATTGTTTGTAAATTCTATTATTGAGTTTCAGTATCATTGTATGATGTATTTTGATTTGTTTTTTTAAAAGGCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAATGTGAGTATATAATATACCTTTCTTGTTGTGTAGTTTGCTCGTTGATTCCCATTTTACTCGTGTTACTTGTACGTGAATTTGTTAGTTTATTCTGTCCTCTGCACTAGTACCATGACCTTTAAAGAGCGGAAAATTATACTGTTTATAGTAGATAGTTGATGTTGAAACCTCTTCAGCTTCTTCGTGTGTTTATTTCTTCATATTTTGAAGAGTTGTTCACCAAGGCTAGAACAGACGAGAAGAATCACCTAGTGTTCTGTCATAGGATATTGATGTTTCCTGTTGTGTACTTTTCGATGAACAGATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATTGTGAGTTTTCGAGATTTCTAATCTCATGTGTTGTTATGTGTTACCCTGTATGTGCCCCCATTAACTCAGTTTGTTATTGTAGGTGGTTCATGCCTTTGAATATCTTCGTCACTTTTATCGTAGGTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAGGTATGTATAAACAGAAAGAACATCAGTCACGAAGACGATGCTTGTAATTGATTTTCCTCAGTTTTCATGTTATGCGGCAACTTCACATTAGTATTCTCGCCAAAATTATGTATTCCCTTCGTTTCAATTTGTTTGTCATACTTTTTGTGTTAGTCCATGACAGGTTTAAGACCACGAGAATGAAGAACATTTTGATACATTCTACGTATCCTTAGTTTATGACCTTTCTTGCTTTCTCAAAATCCCGTGTAAAGTTAAATCCAGACAAACATAAGTCTTCTCTTACTTTCTCCACGTAATTTTGCGCCTGCAATGTGGACAGGAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCGGTATGTGTTTTAATCGATTAGTTTGCTTCACAATACTTTCATATTTGGGATGGTCTCCGATGTGAAATTGCGGTGTTGAATGCTCCATGCCTCGATCTGTTTCAATTTGTTTGTCTGGTTTTGACTTGAGACAGAGGTAGTATCAGCTATGAGCTACCTCTTCACTACGAAGAAAAATAGCAAAAACTATTAACTTTTCATACAAGGAAAATCTAATGCAATGTTTCTCTGGTGATTTCACTTCTTCAGGTATGCGCGGTTTTTCTATGGTCTTATGTGTATAATATTGTCAGAATATCATCAAGT</genome_strand>
        <mrna_strand>CTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAG...............................................................................................................................................................................................................................................................................................................................................GCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAAT................................................................................................................................................................................................................................................................................................................ATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATT...........................................................................................................................GTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAG..................................................................................................................................................................................................................................................................................................................................GAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG.........................................................................................................................................................................................................................................................GTATGCGCGGTTTTTCTATGGTCTTATGTGTATAATATTGNCAGAATATCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U563062" ref_strand="+" ref_description="SGN-U563062 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>cagaatatcatcaagtaagagccccgaagaggttgaagaagttaacaattcctccataagtaaatctgttagagaaagctccatagcagcactcggagtctccacggagccactacttcagagacatgacttagcactatcagagcatcaatctgaacaacttgcactgccctctaatagatttgacgataaatctcaggttgattatggatcacatttcaatcatgcatactcgaaactaactagtccctccgtttcaatctggttgtcttactttcatttttagtctttttccttttcacctggcataacgagtgattatttaagataagtgtgctttggattttgaactctgagtttaacaggtaccgctatggactaaatcgagacagtacatgggagtgctttcaaagaagatgaacctgaagaaattattagccccttctacctgcggagcgggattctcccactggtatcctatctgtcttctgaactcctttgtattgcatgattgtgttagttcgtatctacaacatgtaacttgttagatgtttccgtcaatatgataggcaactcagggttcgtcttgtttacgatctagttattgtgggagtagtattgaccattggtcctgtatagattgcaggttttgttgttggacttatacctcagatcagaaattcaattataggtgatgcagctcctcttcatgtgattcaagatacagctttgatacttggagatggagctgttccgctttctacgctgatcatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="19740" stop="21825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20040" g_stop="20779" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20780" i_stop="21488" i_length="709">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21489" g_stop="21525" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="777" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U563062" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20040" e_stop="20779"/>
          <exon e_start="21489" e_stop="21525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGTTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAGCGGTATTCTCCCACTGTTATCCTATCTGTCTTCTGAACTCCTTTGTATTGCATGATTGTGTTAGTTCGTATCTACAACATGTAACTTGTTAGATGTTTCCGTCAATATGATAGGCAACTCAGGGTTCGTCTTGTTTACGATCTAGTTATTGTGGGAGTAGTATTGACCATTGGTCCTGTATAGATTGCAGGTTTTGTTGTTGGACTTATACCTCAGATCAGAAATTCAATTATAGGTGATGCAGCTCCTCTTCATGTGATTCAAGATACAGCTTTGATACTTGGGTATGAGACTCTCTCAACTTGTTTAAATAAACTAGCAGAGGTAGTTTTCGTATCTTAATGCACGTATTCAATTTATTCGGAGCTATTAGAGCAGGATCCACTTTTTGGTGAATATGAGTCGAAGCAATAACAAGAATATTTCTAGTAGAACATCTTTCACAATTTTTGGAGAAATGGTTCATTAATAGACTGAGTGATGATTCATTCGACTCATTCACATCCAGATCATGAATGTATAAAACAAAAACTCGAACTTTGAAAGTGCACATCTAGACATCTCAACTCGTCTGCACTGTGTTAGTTGAACATTTTGAATCCATTGTGCCAAAAATTAGCTTAACTACTTGGATAGATGGGATGTTTGAACTGAAAAAGAAAAAGTTCAGTAACATTATAAAACGACATAATATATAAACAAACACTTCAACTTGGCTTTAGCTGATAAGTAAGTTCTCGAGCTTTGAGAGTGCATATCTAGACACGTCAACTCGGTCTATAAACTCAACTGACAACTAAATACTCCAACTCATTCTCATTTTGTAAGTTGAAGTATTCAACTGTCACAGTGAAAACGAGTTGAGGTATCTAGATGTGCATACTCAAAGTACTTACTTGCCAACAACGGTCAAGTTTGAGTGTGCACACTTAAATTGTCAACCCTTTTGTCTGCTTGAAGAAAGTGATATTTACATTTCATCAATGACTGCAGAGATGGAGCTGTTCCGCTTCTAACGCTGATCATGGGA</genome_strand>
        <mrna_strand>CAGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGGTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAGCGGGATTCTCCCACTGGTATCCTATCTGTCTTCTGAACTCCTTTGTATTGCATGATTGTGTTAGTTCGTATCTACAACATGTAACTTGTTAGATGTTTCCGTCAATATGATAGGCAACTCAGGGTTCGTCTTGTTTACGATCTAGTTATTGTGGGAGTAGTATTGACCATTGGTCCTGTATAGATTGCAGGTTTTGTTGTTGGACTTATACCTCAGATCAGAAATTCAATTATAGGTGATGCAGCTCCTCTTCATGTGATTCAAGATACAGCTTTGATACTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAGCTGTTCCGCTTTCTACGCTGATCATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576099" ref_strand="-" ref_description="SGN-U576099 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|217074136|gb|ACJ85428.1| (e_value=8e-13) unknown; (*ATH) AT1G76520.2 (e_value=3e-14) | Symbol: None | auxin efflux carrier family protein, contains auxin efflux carrier domain, Pfam:PF03547 | chr1:28720049-28722308 FORWARD | Aliases: None; ">
      <seq>gcctgtgattggtattggtgttgtcaaaggtgcttcatggtttaggcttggtacatgatgatccattgtacaagtttatgcttttacttcattttgcacttccaccagcaatgaacattgcaactataacacagttgtttggagctggtgagagtgagtgttcagtgattatgttatggtcttatgcattggcttcagcagcacttacactatggacagcattcttcatgtggcttgtatcatgagcactaggaaaaacgtcagactccacgtgtgagattatactgaatatgttattgtcgttttagaaaaaaacgagattagaaatgaattaaattactataggagaaaaatgatggttctacttatgtacaataaggatttgcacctcggaaatatgtattgattttttacgtcaaatcaatctatttaccatggttaagcaattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="21309" stop="22871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21609" g_stop="21727" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21728" i_stop="22240" i_length="513">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22241" g_stop="22571" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="451" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U576099" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576099" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21609" e_stop="21727"/>
          <exon e_start="22241" e_stop="22571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGTGATTGGTATTGGTGTTGTCAAAGGTGCTTCATGG-TTAGGCTTGGTACATGATGATCCATTGTACAAGTTTATGCTTTTACTTCATTTTGCACTTCCACCAGCAATGAACATTGGTAAGTTGATTCAACAAGTTATGTTTTTGTTCTCTCATCAACCATCTTTTGTGTTCTATTATCATTTTTATTCGAGTTAGTGGTGAAAAATACACCAAAAGTATCTCAGTTTTTGAGTTTCAAAACGTACCTGACCTATCATGTGAGCGAGTTTCCTTGCTAAAATTTATGGTTCAGGTGTGTTTTGAGGAATAGTTGGTGATAGTTCAGGTAGAAAACTCACACACTTGATAGTTCACGTATGAAACTAAAAGTATCGGAATACTTTGGGTGTGTTTTTTGACCCTTCACTCTGTTTCTGATAGACCTTCGGCTCAAATAAAGAATATAAAAAATTGCATGAAAACAAAATAGAGTAGCCAATATTAAAAATCAAGCAGAGATTGTTATTTCTTTGTGTATATATCAATTCATCATCTGTTAATGAACGTGTCATTTGCTTCATCTTGCTCAATTACGTATAGTTGTTATAGAGAGATTTGACTGTTTTCGTGAACACGGTTTTATTTGCAGCAACTATAACACAGTTGTTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTATGGTCTTATGCATTGGCTTCAGCAGCACTTACACTATGGACAGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</genome_strand>
        <mrna_strand>GCCTGTGATTGGTATTGGTGTTGTCAAAGGTGCTTCATGGTTTAGGCTTGGTACATGATGATCCATTGTACAAGTTTATGCTTTTACTTCATTTTGCACTTCCACCAGCAATGAACATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTATAACACAGTTGTTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTATGGTCTTATGCATTGGCTTCAGCAGCACTTACACTATGGACAGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U593092" ref_strand="+" ref_description="SGN-U593092 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aatcttcccaaatctcaacatttttcagggcgtcaaaatttcaaaaacacaaataaaaaaaacaatttacaaaagtaaaaacagttgaaagcctttttaatgtcatacaatccgactaacatttttgtaactaaataaagtttatgcaaaggggaaaaaaccatcggggggggaaaaaagggggggtaggggggtgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="23551" stop="24350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23850" g_stop="24050" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U593092" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23850" e_stop="24050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTCAAATCTCAACATTATTCAGGTCGTCAAAATTTCAAAAACACAAATAAAGAAAACAATCTACAAGAGTAAAGACAGTTGAAAGCCTCTCTAATGTCATACAATCCGACTAACATTTCTGTAACTAAATAAAGTTTATGCAAAGTGGAGAAGACGATCGGAGGGGGAAAAAAGGGTGGGTAGGTGGGTGGGGGG</genome_strand>
        <mrna_strand>AATCTTCCCAAATCTCAACATTTTTCAGGGCGTCAAAATTTCAAAAACACAAATAAAAAAAACAATTTACAAAAGTAAAAACAGTTGAAAGCCTTTTTAATGTCATACAATCCGACTAACATTTTTGTAACTAAATAAAGTTTATGCAAAGGGGAAAAAACCATCGGGGGGGGAAAAAAGGGGGGGTAGGGGGGTGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U568443" ref_strand="+" ref_description="SGN-U568443 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157358644|emb|CAO66320.1| (e_value=4e-75) unnamed; (*ATH) AT1G21065.1 (e_value=3e-69) | Symbol: None | expressed protein | chr1:7374199-7375778 FORWARD | Aliases: None; (*SWP) sp|P0AF49|YJBQ_ECO57 (e_value=9e-34) UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ; ">
      <seq>gattcactagcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaacgagtttgtacatggaagttatcgttccagcgttgcatctttttatggagcagattagcaccatatgtgttttcattttcatgtaatgaagaagctcaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31768" stop="37302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32067" g_stop="32336" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="331" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="426" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="460" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="515" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="558" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="37003" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="942" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U568443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32067" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="37003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGATTAGCACCATATGTGTTTTCATTTTCATGTAATGAAGAAGCTCAACCTG</genome_strand>
        <mrna_strand>GATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGATTAGCACCATATGTGTTTTCATTTTCATGTAATGAAGAAGCTCAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U596148" ref_strand="+" ref_description="SGN-U596148 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157358644|emb|CAO66320.1| (e_value=9e-40) unnamed; (*ATH) AT1G21065.1 (e_value=1e-34) | Symbol: None | expressed protein | chr1:7374199-7375778 FORWARD | Aliases: None; (*SWP) sp|P0AF49|YJBQ_ECO57 (e_value=2e-13) UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ; ">
      <seq>cttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31849" stop="37102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32149" g_stop="32336" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="249" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="344" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34874" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="354" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34875" i_stop="36637" i_length="1763">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36638" g_stop="36802" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="519" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U596148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32149" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34874"/>
          <exon e_start="36638" e_stop="36802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCA</genome_strand>
        <mrna_strand>CTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U596146" ref_strand="+" ref_description="SGN-U596146 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157358644|emb|CAO66320.1| (e_value=4e-23) unnamed; (*ATH) AT1G21065.1 (e_value=4e-21) | Symbol: None | expressed protein | chr1:7374199-7375778 FORWARD | Aliases: None; ">
      <seq>gttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttcaattctactatgactgagtatggttagctgtgtgtttaaccagtgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgagggtaagtgtgtaacgtaatccctgtcatctgtactgctgtttcttttcttttttggttaatcaggtatttgactggattttattccaggggtggcaatttaatgggttgctgtaggtttgtgggatgaaaactatatgagccaaaaacctatcaatttttgcctgagcttggggaaactcaaaatcttgaggctgagcttgactctctattaagacttaagagctcgtgctcgggcctgagatgcttgaaaaccgatgtcccaactcaagaaaccacattttcaatatgataatccacaaattactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34196" stop="35507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="73" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34643" g_stop="34780" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="211" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34865" g_stop="35207" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="554" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-U596146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34643" e_stop="34780"/>
          <exon e_start="34865" e_stop="35207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAA</genome_strand>
        <mrna_strand>ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC.............................................................................AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575241" ref_strand="+" ref_description="SGN-U575241 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|15223134|ref|NP_177792.1| (e_value=2e-92) expressed protein [Arabidopsis thaliana]; (*ATH) AT1G76660.1 (e_value=1e-94) | Symbol: None | expressed protein | chr1:28773774-28776260 REVERSE | Aliases: F28O16.3, F28O16_3; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=1e-93) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660; ">
      <seq>tctcggcacgaggatttgagtctctgtgtctcttcctgtagagagaagcaaaaaaaagaaatagtatcagttctactagtatagtactagtagcatcagcagtacatacactcttctccattttattgaccaaaaatgttgaatttgtctgcatctgttgaatgagcaaaaaggattttgttgtttgtgtgtttaacaaccattttttttttgagtatttttgagttttgagtgtgtatgtgtgttttagtgtggagatgaaagagtaagtgttgaaaagaagaagaaaacaaagatttgtttgtgtttaagcagttgggtgaaagtgtactgaagtgaagttgattaaaaaaggagtttgatttagctgaagtttgacagtagaaatggggtcggagcagaatagatttccgcagcaacaaggaccgccacttccttctcggcataaacgatggggaggatgtttgggaagattgtcttgttttggaagacaaaaaggtggaaagcgtatagtgccttcatctcgtattcctgaggccaattcaatgccaaatcagcagaatgttccccaagctggtgggctgaataatcagacggcagctcttttagctccaccatcttcaccagcatcattttcgaattcagcactcccttcaacagctcaatcaccaagctgttttttatctagcaattcaccaggaggtccttcatcagctatgttcgccactggtccatatgctcatgagacccagttggtatctcctcccgtgttctctaacttcaccactgagccatctactgctcctttcacacctccgcctgagttggcccacttaactactccctcttcaccagatgtgccttttgctcggttcctctcctcttctgtgaaagttaaaactaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcgaggggaccaggtgaaagggaacttcctcagttggatccttctatcccttcatccgagatcaagtatccaggccctgattcaagcacctccaagctgactcaagattcaaatttcttctgtccagctacatttgcccaatattacattgaccactctttatttcctcattctggtggaaggctgagcgtttccaaagaaactgatgcttatgcaactaataatgggaatggccagcagagttggcagaacaaaccatctaaacaagatgcagaggaagttgaagcgtatagagcatcctttgggttcagtgctgatgagattgttagtacgacgcaatatgtggaaatttctgatgtcgcattagatgaatcctttagcatgactccttttactaagcccagagaagaggaaatcatattaactatgtcaacagctgagggaacaaaaggagggaatatctctaatatggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="41089" stop="37872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40789" g_stop="40360" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="443" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39184" g_stop="38172" g_length="1013"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="1456" r_length="1013" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-U575241" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1443</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40789" e_stop="40360"/>
          <exon e_start="39184" e_stop="38172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAGTCTCTGTGTCTCTTCCTGTAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGGGTACTGTGCATTTCACTTTTCAGATCTATTAGCTTACTGTGTAATTTTGTATGTGTGGATGAGAATTTTGTGAAATCTGTTATGGGTTTACTTGTTGTAATGTTTTAGTAATTAAATTGTGTGGTGGAATTACATTTGCAAACAGATCTGAGGTTTTGGTGAGATGGGGTTGTGGAGTTTTTGTGATGGAATAACTTTAAATCTACTAAATAGTGGTTGTATGGAGTGATGAATCTAGTTTCCTAATTGATACTATTTAATAATGTTGTTATGCTGCCGTGGCTGTCGTTTACCGGTTGATGAAGTGGGTTGAGAATTGTGAGATCTTGTGTTCAAATCCCACTAGAGATTAAAACAAACATTAGGCGATTTCTTACCGTTTTGTCCTAGCTTTTGTGTATGGAGTTACGTGGTCCCTAGTGCTAGTGAGAGGTGGGGAGTATCCCGTGGAATTAGTTGAAGTTGGGACACAACGGTCATAAAAAAATGATATTGTAGTTAATCTCACTCGTAAGAAAATATAGGAATTTATTTAATGCAGTAATTTTTGAGGGCGGGCCGCGGGGATGATGATCTTATTGAGGCCAAAACAATGTTTTCACTTTGTTTATTTTGAGAAAGGATTCACTAGCAAACCTGCTGGTTGTTGAGTTTGGCTCCACTGTGTGTGGACCATGGTATCTTTTAGATGTGTGAAAATGCAGCTGATACATGAGTCTAGTGCTTGGTGATAGAGACAATGAATAAGCTTTTCATCGTTGACTTAGATGTCGTAAGGGAATATTAAAAGAATAACATTGACTATTAATGTTTTCGCACTTGGTCTAACTTCTGTATATTATGATTTTACTTTCGTGTTATCATATTTCCCGTGTGAACCACTTAGGCAAAGAGGCAGATCAATGAATTTTGATTTGTGGGTTCTGAATTACGATCCTTTTTGCTTGCTGGTTTTTTGATAGCACATTGAATATATTTTTAAATATAAATAAAGTGTTCCACTGTAGTTTAATGGGTTTTGCTGAACCAGTAGCTCTAAGGCTGGCTCCTCCCCTGCTTACATAGGCAAATGCCTTCTGAATTTTACATGAATGCACCTTTTATCCAGCATCTTCCCGTTTTTTTGTTTTTTATGTTGAGTACACCCCAACAGCTAATGCTCTATTCTTTGACAGCATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATC</genome_strand>
        <mrna_strand>ATTTGAGTCTCTGTGTCTCTTCCTGTAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCCGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578006" ref_strand="+" ref_description="SGN-U578006 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157358651|emb|CAO66327.1| (e_value=8e-140) unnamed; (*ATH) AT1G76670.1 (e_value=2e-134)  Symbol: None | transporter-related, low similarity to glucose-6-phosphate/phosphate-translocator precursor (Solanum tuberosum) GI:2997593, GDP-Mannose transporter (Arabidopsis thaliana) GI:15487237; contains Pfam profile PF00892: Integral membrane p... ; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=2e-52) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890; ">
      <seq>tggaattccacaagttttacaagaatctttcaacctgcctagataatgttgtataacttgtggaattccaaagtgtctccttttgacttccgcacctcgacctcttctttctctctcttcaaattccatttttttttttttcagatcttcacttcccacgcaaaggagaaaaacaacacatcccacatgctccattttctctctcttgtttctctctctacaaaataaagcaaagtgttatgcttttcagtagtatcacaaaaatataaatctgaatctacttaattgggctcattcgttattgtagatctgcaaaattgtgttgatatttgtgttatatattgtttaagaaaaaaaaaaaatcctgcccctctctgttaaacgagttgggtaggtgatttggttttgctattttggattatcaataattgttgttataatatatatagttgttattgttaagtatggagagcgagaagaaatcgtctcatgtatcggatatgggagcatgggcgatgaatgttgttagttcggtgggaattattatggctaataagcagcttatgtcggccaatggttatgcattcacttttgctacaacattgactgggttccactttgctgtgactgcacttgttgggatggtgtcaaatgccacagggctttcctcatcaaagcatgtacctttgtgggaacttatctggttctcagttgttgcaaacatgtctatcacagggatgaacttaagtctcatgctcaattcagtcggattttaccaaatctcaaagttgagcatgattccagtggtttgcattatggaatgggtccttcataataaacgttactcgaaggaggttaaaatgtctgttgtggttgtcgttatcggcgtgggtgtttgcacagtaactgatgtcaagcctaacgccaaaggttttatttgtgcttgtgttgcagttctgtcaacatcattgcaacagatttcaataggctctttgcagaaaaagtactcaattggatcctttgaattattgagtaaaactgctccgattcaagcttgctccctccttgtgctgggtcctttttgcgactactatcttagtggaaatctattactagactacaagtattcttatggtgccattttctttatactcctgtcgtgttcattagctgtgttctgcaatgtgagtcagtatctctgcatcgggcgattctctgcagtttccttccaggttctaggccacatgaagaccgtgtgtgtcctgactttaggctgggtgctctttgaatctgcgttgacttttaagaacataatgggaatgctcgttgcaattgcgggcatggtgatctatagttgggccgtggaggtcgaaaaacaaaccaacaccaagagtccacacgcttccaaaaacagcttgacagaagaagagctgaaattattgaaggagggaatggagaaggccgacgtcgaagtcggtcagtccaaggcatgaaatttttgaggtctcttatttagtagccatcatcacatattatagattcttttggatcaaatttgcatgtagtttattaattttgttgcattatttattggacatccttccatttggtcccaatttggtgaccttgtcttgttttttttccttcttaatagttactgaatgttttgttctttgtccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="48600" stop="43900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48307" g_stop="47810" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="594" r_length="500" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47809" i_stop="46812" i_length="998">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46811" g_stop="46627" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="779" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46626" i_stop="46039" i_length="588">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46038" g_stop="45838" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="980" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45837" i_stop="45017" i_length="821">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45016" g_stop="44855" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1142" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44738" g_stop="44195" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1143" r_stop="1686" r_length="544" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-U578006" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1590</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48307" e_stop="47810"/>
          <exon e_start="46811" e_stop="46627"/>
          <exon e_start="46038" e_stop="45838"/>
          <exon e_start="45016" e_stop="44855"/>
          <exon e_start="44738" e_stop="44195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTTCTTTCTCTCTCTTCAAATTCCA-TTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAG-AAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTGGTAAATCTCATTAACTTTTTGCCGGTGTTATATATAGATCTTGTGAGAATTTTTTGTTTATTTATACGTAGTATGTATTTTATTATTTTTCGTGGCGGATCCAGGATTTGGAGGTTGCGGGTGCAGGGATGAATATAAAATGTTGTAATTTGTCTGTATTCTGGTTGATTTTTGTATTAATTTAGCTTGTTTTTTGTTCATAAATGTGCAATTTGATCTGAATTTTGAATTTTTGTTTCGTAATATGTTTTAATTATGAATGGAGAAGAAGGAGAAGAATTGTTTTTTTTGGCTAGATGGATAATGGATGTAGAGTATCATGTTTACAGTTCATAATGAGCTTAATGAAGCATATATTCAATTCTCAGACCATAGAAGCATATGTTAACTATAAACCTCGAATTTATTACTAAAATGAGAAAAAAAAAGATGTTTGATATTGTGTGTGGGTGTGGGGGGGGGGGGGGTGATATTTGAAAAACAAGATATCGACTATAGTACCTATTAAATTGAGATCAACTCTTTGATTCGCCTTTGCTAACCCGTGTTCTTAAGATTTGAAATATTGTTTGCATGGTTATATACAGTTGTAATCAGATTTGCCATTTCCACTGCCTTAAAAGTATTGGTTTCGTAGAAGAAGACGTTGGCTTGAAATTAATCCCATTGTGACTAACGGATTCCTTTACAATATTGAGCTAGTGTATCTCAATACATTCCTCTGGTTGCTTTGTTTCGTCATTTTGAACTAGCTTGTCTAGGTCTAGATACATTGTGCTATTTTGACTACAAAGATTTTTAAGGTTTGTATTTGAACTGAAAATAAACTCCTTCTGGCTTAGTGGTGGAACCTGACGTTTTCGGCTTTCCTTCTTCCACTTCTTGAGGTTTAGAAGTTTGTTGTTCCTATTACATTCCAATTCCCCTCTTCTGTATGTATGCTTTTAAATTTGGATGGTCCATCTGTCAATTTTAATGTCATGGTTTGTTTCCTCCAGCTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAAGTATGATAATCTCTCTTTTGTTTTATAGCTGTAACGTTTCTTGTTATGTCTTGTATTTTGTTCTCTTGAAAAAGATAAGTCTTGAATTTTGGCTATGTCTATCAGAGGGTGAAGAATATTTGCTAACAACGTGATTATGCTATCAGCTTTCAGTCCTTTCTCATAAAATGATTTCATCTTTTGTTGTTTGCGTTCGTGATCTATTGACAATGAGTTAACTTATACTGATCAGTATCTTCATTATCTGAAATGACAAAACATGGTTTGGGTTCAATTCGAAAGGGAAAGGAAGGATAGAAAATTGAAAAAATGAGAATAGAATACCAGTCAGGGTGTTCCATTTTCTTTCTTTGATTGATCTAAAAGGATAATTGCAGGTAAGGAATTGATCTTCCCTCTTCCTCCTTCATTGCAAATCAGTTAGTAGAATGGAAACCAATAGTAAAAAGAAAAGTTGTTTCCTTTCATTTACATATTAGCTCAATGTATTATATCGTATACTAGCAGTGCCATTTGTTTTATTTTTTGTTCCTTGGTGAAATTTCATTTTATATGGCTAAAGTTCTTTTTTTTTTGGTTGGGGTGTAGATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTGTGGTTGTCGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATTGTGAGTATACTCTGGCTTCTTCGGAACTTACTGCAAAAAGACTGAATGATTGAAAAGATTTCCAGAAGAGAAATATTTGATTTTGTTCTGATTTAAGATCACTATCATTTAAAGTTAAACAATTTCCTAGACGTTTGATAATTTCTCCTCTGACCATGATAAAAGATCGCATTGAAGCGGCTAATCCAATGCATACATAAATTCTTTAGAATGTTAGGTGTCTTCTGTAATTTGACTCTACTATTTATGTGGGTTTAATTTATGATTACAAACTTAGTTTTCCTTTCTGAGAGGCAGTTTATTTAGGGAGCCTGCTCCTTAATAAAGATCCTTTCTTTCCATTAGAAGCTAAAGGATAGACATCTGTGATTTTTCCCTTTTTCCGTCCTCCCTTTTCTCCCATAGAAGTGATGAAAGTTTGCCTTCCTTTTGTTTCATACTAGTGTCGAGAAGAAGTAACTACTCTATCAGACCTTTTTATCCTTGACAAGGATCGTTTCTCGCTCTAAAAAGCTAAAGAAAAGAATTCTCCAAATTTTCATATTCTCTCTCTGCTTTTACCCTTTTTAAAAAGCTTTACAACAAGAAATAGGCCTCAGTCTCAAACAAGGTGCTACATTTGTTGTGTTGCTTTTAATAACCTGCTAGCCTCATTCATACAATACATTTTGTCATCAAGCTCTCGCATTCTTCTACCAAATCAAATCCTTGCTTCATTCTTGACCCCCCCCCCCCTCCCCTGCCCCCTCGAGTCATTCTCTCTTTGTTCTCTTAAACTTGTGGTTGCATTTGTGTGATCAAACGATGATTTCTCGGTGCAGTCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATTGTAAGTATCAACCAATCTTCTTATTCCCAGATTATGATGCATATTTGATTGGTCCTTTTACGGCCTACACAACTTTATGCAATCTGATCCATGGATGTGTGTGGCACTTTCTGCAGTTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACATCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAAGTCTA</genome_strand>
        <mrna_strand>CCTCGACCTCTTCTTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAGAAAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTGTGGTTGTCGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGCCTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATT....................................................................................................................TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCATGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGATTCTTTTGGATCAAATTTGCATGTAGTTTATTAATTTTGTTGCATTATTTATTGGACATCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584673" ref_strand="+" ref_description="SGN-U584673 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157358653|emb|CAO66329.1| (e_value=4e-43) unnamed; (*ATH) AT1G21080.1 (e_value=3e-29) | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to SP:P39101 CAJ1 protein (Saccharomyces cerevisiae); contains Pfam profile PF00226 DnaJ domain; | chr1:7378581-7382451 REVERSE | Aliases: T22I11.9, T22I11_9; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=1e-24) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10; ">
      <seq>gctggaagcttaatgtagcagatattgaagccactctttctcgtgtttgtcaaatggttctacaagacaacaacgtaaagaaagaagagcttcgtgcccgcgcaaaggggttaaagactctcggcaaaatttttcagaaggttaagccagtcaatgaagtcgaaactacagaaaatggcgtccataagctggacggaaatgaaccaagctatgactctcgttcttcaactgcatcagtaccatctcaaaacaaagaagaggtgccttatacagtatttgcatcacagagcccatacgtggaggctccacagtttaccggtggtcaatccagctataacttccccatgccgactgcaccaccaggtgcgcagagacacaggtagacagacaaatggtggacgccgcaagaatttgtgtagcttgtgaatttgtagtgagtttgagtttcttatgtatccctagtgtgctatatttaaagcataattcttgcttagcagagaaaagcttctgtcatattgctttttatgaaggactgctttgtaattaatatagttattagagtgtaagttgtgtggcctgtgaatgcaaaatattgtatattgcattggtctatttatattgtatgttgtaataacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="53811" stop="51232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53512" g_stop="53457" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53456" i_stop="53374" i_length="83">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53373" g_stop="53293" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="137" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53292" i_stop="53203" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53202" g_stop="53053" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="287" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53052" i_stop="51882" i_length="1171">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51881" g_stop="51532" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="637" r_length="350" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-U584673" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53512" e_stop="53457"/>
          <exon e_start="53373" e_stop="53293"/>
          <exon e_start="53202" e_stop="53053"/>
          <exon e_start="51881" e_stop="51532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGAAGCTTAATGTAGCAGATATTGAAGCCACTCTTTCTCGTGTTTGTCAAATGGTTGTTCACTTTTATCATGTTGTTTTGTGGCTTATTCTTGTATTTTTCATATTTATTTGTGTTAATATTCTTTACTTTGTTAGGTTCTACAAGACAACAACGTAAAGAAAGAAGAGCTTCGTGCCCGCGCAAAGGGGTTAAAGACTCTCGGCAAAATTTTTCAGGTACTGTTGTTGACCTATGATTAAGTAGGTAGCGTGATCCTCTCAATTGGTTAACCTTGTTGTTCTGTTGAATGATATTCTTATGTACAGAAGGTTAAGCCAGTCAATGAAGTCGAAACTACAGAAAATGGCGTCCATAAGCTGGACGGAAATGAACCAAGCTATGACTCTCGTTCTTCAACTGCATCAGTACCATCTCAAAACAAAGAAGAGGTGCCTTATACAGTATTTGCATCACAGGTACTGCTCTGATTTGTGTTCTATTCCTTTATGAACAGCTAGCTAACTTGCACAGGTTTGGTTCCTTTACTGGCCTCTTTCTTTGGTTAATTGCCTTTTTGGTCCTCAGATTGTAAGTTCAAAACGAATTTCTGTTGTATATTGCTGTGCTGAGAACACTTAGCCTTTGGTATATTTGAAAATGAGGTATTGTTCCTTTTATAAATGAAGTCAACCAAAGATATAATTATCAACATTATTGCATTATGGCTGCCATCACCTTCCTAACTCCCCCCCTACTCTGCCGTCACCACCAATCCCTGAGACTTTTTTCCCCAACTGTTCACTGGCACTTTGGTTGGAGATGTTTGGTTGCAATAGATAGGTAGTTTGGGAGAGGTTTTCAGGGTTATATGCTTGGGGTGGGGGGTGGGGGGTTGTGGAGGAGGGGGGGGGGGGTAGAGAGGGGCTGAAGAAAGCAGTGGAGCTTTAACGTTTCAATTGGATTTGGTTGATTCTATTAGTGGGGGTAAATTTGCTTGTTACGCGAACTTGGAAGTCTACTAATTGTGATTACATACATAACTGGTTCAAGACACAGAGACATGGTAAAAAAGAGAGCTCTTTGGGATTGTTATGCTTGGAAGGACAACTATTTTCTCCTTTTAGAGATACAAGAGGAACTAGTCAAAAGTAGATTTTCACCTTGGGAATTGCTACTTGCAACTGCAGCTTAGTGAGAGATTTACTTGCCATGCGTCGCATGTCAGTGTCATGTAGATGCAAGGGCAGAAAAGGATTCAGACTAAAAGGTTTCTCCTGACTTATTTTCTTTCATCTTTTTGGAGGTGAGTTTGTAGAACAGTTCAGGATAAAAAAAAACCTTCGGCTCTATCCATGCATTCGCTGCATGACAATATCATTAAGAGATGGTAAAGTGATAAAGAAACGGGTGGAGGGTAATATTCTTGCACTTCTTCTGTCAATCTTAATTTCCTTTTCCTTTTAGTGTTGTCAAGAAGAATATATCGTGTTTTACATCTACCAAAACAATAGAAGGAAGATATTCCATTGTAATGAGTATATCGTCTATTATAGGAAATGTTCCAACATCTATGATTCATTTCAAATGAAGCAAAGATCATGTCATTTTGTCTTTTACATCATCTTAACTTTTGGACATATTTTCCAGAGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAACCA</genome_strand>
        <mrna_strand>GCTGGAAGCTTAATGTAGCAGATATTGAAGCCACTCTTTCTCGTGTTTGTCAAATG...................................................................................GTTCTACAAGACAACAACGTAAAGAAAGAAGAGCTTCGTGCCCGCGCAAAGGGGTTAAAGACTCTCGGCAAAATTTTTCAG..........................................................................................AAGGTTAAGCCAGTCAATGAAGTCGAAACTACAGAAAATGGCGTCCATAAGCTGGACGGAAATGAACCAAGCTATGACTCTCGTTCTTCAACTGCATCAGTACCATCTCAAAACAAAGAAGAGGTGCCTTATACAGTATTTGCATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTTATATTGTATGTTGTAATAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567290" ref_strand="+" ref_description="SGN-U567290 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>catgaatcatcaatttccatcttgcactttattcatcacaatctcaaatttacagtccctttcggtttgttagaggaaaaaaattgaattttttcttctatttttgtacgtggaattgatgttttctgttcttcgatcccctttttttcgaacttcatagcagtttcattgttttaatctcttaaattgctgaccctttcggtttgttagaggaaaaatttgatcttttttttttttttgattttgtacgtggggttgttgtttcctgttcttagatccccttttttgaaacctcatagcagtttattgttttaatctcttaaattgctgacccttttggtttgtttagaggaaaaattcgatcttttcttcgattttttgtacgtggggttgttgttttctgttcttcgattccccttttttgctgacccttttggtttgttagaggaaaaattcgatcttgggatttgtattttctgtttttcaacttgatagcagtttcatcaccataatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="61066" stop="59951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60766" g_stop="60251" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-U567290" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60766" e_stop="60251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATCATCAATTTCCATCTTGCACTTTATTCATCACAATCTCAAATTTACAGTCCCTTTCGGTTTGTTAGAGGAAAAAAATTGAATTTTTTCTTCTATTTTTGTACGTGGAATTGATGTTTTCTGTTCTTCGATCCCCTTTTTTTCGAACTTCATAGCAGTTTCATTGTTTTAATCTCTTAAATTGCTGACCCTTTCGGTTTGTTAGAGGAAAAATTTGATC--TTTTTTTTTTTTGATTTTGTACGTGGGGTTGTTGTTTCCTGTTCTTAGATCCCCTTTTTTGAAACCTCATAGCAGTTTATTGTTTTAATCTCTTAAATTGCTGACCCTTTTGGTTTGTTTAGAGGAAAAATTCGATCTTTTCTTCGATTTTTTGTACGTGGGGTTGTTGTTTTCTGTTCTTCGATTCCCCTTTTTTGCTGACCCTTTTGGTTTGTTAGAGGAAAAATTCGATCTTGGGATTTGTATTTTCTGTTTTTCAACTTGATAGCAGTTTCATCACCATAATCTCAT</genome_strand>
        <mrna_strand>CATGAATCATCAATTTCCATCTTGCACTTTATTCATCACAATCTCAAATTTACAGTCCCTTTCGGTTTGTTAGAGGAAAAAAATTGAATTTTTTCTTCTATTTTTGTACGTGGAATTGATGTTTTCTGTTCTTCGATCCCCTTTTTTTCGAACTTCATAGCAGTTTCATTGTTTTAATCTCTTAAATTGCTGACCCTTTCGGTTTGTTAGAGGAAAAATTTGATCTTTTTTTTTTTTTTGATTTTGTACGTGGGGTTGTTGTTTCCTGTTCTTAGATCCCCTTTTTTGAAACCTCATAGCAGTTTATTGTTTTAATCTCTTAAATTGCTGACCCTTTTGGTTTGTTTAGAGGAAAAATTCGATCTTTTCTTCGATTTTTTGTACGTGGGGTTGTTGTTTTCTGTTCTTCGATTCCCCTTTTTTGCTGACCCTTTTGGTTTGTTAGAGGAAAAATTCGATCTTGGGATTTGTATTTTCTGTTTTTCAACTTGATAGCAGTTTCATCACCATAATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="18041" PGL_stop="21525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18067" e_stop="18112"/>
            <exon e_start="18448" e_stop="18714"/>
            <exon e_start="19019" e_stop="19098"/>
            <exon e_start="19222" e_stop="19305"/>
            <exon e_start="19628" e_stop="19749"/>
            <exon e_start="19999" e_stop="20779"/>
            <exon e_start="21489" e_stop="21525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="0.978"/>
          <exon-intron don_prob="0.990" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.214" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.988" e_score="0.996"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="18067" e_stop="18112" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="18113" i_stop="18447" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18448" e_stop="18714" e_length="267"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.844">
            <gDNA_intron_boundary i_start="18715" i_stop="19018" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19019" e_stop="19098" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.952">
            <gDNA_intron_boundary i_start="19099" i_stop="19221" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19222" e_stop="19305" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.214">
            <gDNA_intron_boundary i_start="19306" i_stop="19627" i_length="322"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19628" e_stop="19749" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.792">
            <gDNA_intron_boundary i_start="19750" i_stop="19998" i_length="249"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="19999" e_stop="20779" e_length="781"/>
          </exon>
          <intron i_serial="6" don_prob="0.940" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20780" i_stop="21488" i_length="709"/>
          </intron>
          <exon e_serial="7" e_score="0.919">
            <gDNA_exon_boundary e_start="21489" e_stop="21525" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18067" stop="18112"/>
              <exon start="18448" stop="18714"/>
              <exon start="19019" stop="19098"/>
              <exon start="19222" stop="19305"/>
              <exon start="19628" stop="19749"/>
              <exon start="19999" stop="20055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20040" stop="20779"/>
              <exon start="21489" stop="21525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAG : GCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAAT : ATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATT : GTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAG : GAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG : GTATGCGCGGTTTTTCTATGGTCTTATGTGTATAATATTGTCAGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGTTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAGCGGTATTCTCCCACTGTTATCCTATCTGTCTTCTGAACTCCTTTGTATTGCATGATTGTGTTAGTTCGTATCTACAACATGTAACTTGTTAGATGTTTCCGTCAATATGATAGGCAACTCAGGGTTCGTCTTGTTTACGATCTAGTTATTGTGGGAGTAGTATTGACCATTGGTCCTGTATAGATTGCAGGTTTTGTTGTTGGACTTATACCTCAGATCAGAAATTCAATTATAGGTGATGCAGCTCCTCTTCATGTGATTCAAGATACAGCTTTGATACTTGG : AGATGGAGCTGTTCCGCTTCTAACGCTGATCATGGGA</gDNA_template>
            <first_frame> F  *  R  S  W  F  S  N  E  Q  *  N  K  N  S   : G  V  L  *  Y  V  N  R  Y  S  N  L  V  L  A  D  K  *  A  S  E  L  *  E  C  T  C  R  R  L  N  L  I  L  C  F  I  V  H  T  K  G  T  R  Y  G  A  F  R  S  V  S  C  S  I  N  A  S  Y  S  N  S  F  D  N  S  T  W  T  S  S  C  I  R  S  I  R  H  T  W  R  G  C  K  E  A  F  E  *   : Y  C  V  L  H  M  Q  S  I  T  D  F  K  Q  L  I  Q  N  N  Y  I  R  E  H  E  T  I  :  V  R  F  L  L  G  L  S  I  K  *  Q  D  L  L  N  I  Y  E  A  S  L  *  A  A  V  L  Q  :  E  T  W  A  T  C  F  S  S  *  F  Q  L  F  V  R  R  K  E  A  H  S  E  R  L  I  F  A  I  H  M  G  W  A  M  L  P  F  Q  W  R :   Y  A  R  F  F  Y  G  L  M  C  I  I  L  S  E  Y  H  Q  V  R  A  P  K  R  L  K  K  L  T  I  P  P  *  V  N  L  L  E  K  A  P  *  Q  H  S  E  S  P  R  S  H  Y  F  R  D  M  T  *  H  Y  Q  S  I  N  L  N  N  L  H  C  P  L  I  D  L  T  I  N  L  R  L  I  M  D  H  I  S  I  M  H  T  R  N  *  L  V  P  P  F  Q  S  V  C  L  T  F  I  F  S  L  F  P  F  H  L  A  *  R  V  I  I  *  D  K  C  A  L  D  F  E  L  *  V  *  Q  V  P  L  W  T  K  S  R  Q  Y  M  G  V  L  S  K  K  M  N  L  K  K  L  L  A  P  S  T  C  G  A  V  F  S  H  C  Y  P  I  C  L  L  N  S  F  V  L  H  D  C  V  S  S  Y  L  Q  H  V  T  C  *  M  F  P  S  I  *  *  A  T  Q  G  S  S  C  L  R  S  S  Y  C  G  S  S  I  D  H  W  S  C  I  D  C  R  F  C  C  W  T  Y  T  S  D  Q  K  F  N  Y  R  *  C  S  S  S  S  C  D  S  R  Y  S  F  D  T  W  :  R  W  S  C  S  A  S  N  A  D  H  G  </first_frame>
            <second_frame>  S  K  D  R  G  S  R  M  S  N  R  T  K  I  Q  :  A  Y  C  N  T  *  T  D  T  Q  T  W  S  *  L  T  S  K  H  P  N  F  E  S  A  R  V  D  D  S  T  *  S  S  V  S  S  F  T  R  K  E  L  D  M  G  L  L  D  L  L  V  A  A  S  M  P  V  I  Q  I  L  L  I  T  A  L  G  L  V  L  A  L  D  R  F  A  I  L  G  E  D  A  R  K  H  L  N  N  :  I  V  F  Y  I  C  N  P  S  L  I  S  S  N  L  S  K  T  I  T  Y  E  S  M  K  R  L :   F  D  S  C  L  D  C  Q  S  N  N  K  T  S  *  T  S  T  R  P  R  Y  R  L  L  C  C  R :   K  H  G  Q  H  A  S  H  H  S  S  S  C  L  *  G  E  R  K  P  I  R  S  A  *  Y  L  P  Y  I  W  D  G  L  C  F  P  F  N  G   : G  M  R  G  F  S  M  V  L  C  V  *  Y  C  Q  N  I  I  K  *  E  P  R  R  G  *  R  S  *  Q  F  L  H  K  *  I  C  *  R  K  L  H  S  S  T  R  S  L  H  G  A  T  T  S  E  T  *  L  S  T  I  R  A  S  I  *  T  T  C  T  A  L  *  *  I  *  R  *  I  S  G  *  L  W  I  T  F  Q  S  C  I  L  E  T  N  *  S  L  R  F  N  L  F  V  L  L  S  F  L  V  F  F  L  F  T  W  H  N  E  *  L  F  K  I  S  V  L  W  I  L  N  S  E  F  N  R  Y  R  Y  G  L  N  R  D  S  T  W  E  C  F  Q  R  R  *  T  *  R  N  Y  *  P  L  L  P  A  E  R  Y  S  P  T  V  I  L  S  V  F  *  T  P  L  Y  C  M  I  V  L  V  R  I  Y  N  M  *  L  V  R  C  F  R  Q  Y  D  R  Q  L  R  V  R  L  V  Y  D  L  V  I  V  G  V  V  L  T  I  G  P  V  *  I  A  G  F  V  V  G  L  I  P  Q  I  R  N  S  I  I  G  D  A  A  P  L  H  V  I  Q  D  T  A  L  I  L  G :   D  G  A  V  P  L  L  T  L  I  M  G </second_frame>
            <third_frame>   L  K  I  V  V  L  E  *  A  I  E  Q  K  F  R :   R  I  V  I  R  K  Q  I  L  K  L  G  L  S  *  Q  V  S  I  R  T  L  R  V  H  V  *  T  T  Q  L  D  P  L  F  H  R  S  H  E  R  N  S  I  W  G  F  *  I  C  *  L  Q  H  Q  C  Q  L  F  K  F  F  *  *  Q  H  L  D  *  F  L  H  *  I  D  S  P  Y  L  E  R  M  Q  G  S  I  *  I  I :   L  C  F  T  Y  A  I  H  H  *  F  Q  A  T  Y  P  K  Q  L  H  T  R  A  *  N  D   : C  S  I  L  A  W  I  V  N  Q  I  T  R  P  P  K  H  L  R  G  L  V  I  G  C  C  A  A   : G  N  M  G  N  M  L  L  I  I  V  P  A  V  C  K  E  K  G  S  P  F  G  A  P  D  I  C  H  T  Y  G  M  G  Y  A  S  L  S  M  A  :  V  C  A  V  F  L  W  S  Y  V  Y  N  I  V  R  I  S  S  S  K  S  P  E  E  V  E  E  V  N  N  S  S  I  S  K  S  V  R  E  S  S  I  A  A  L  G  V  S  T  E  P  L  L  Q  R  H  D  L  A  L  S  E  H  Q  S  E  Q  L  A  L  P  S  N  R  F  D  D  K  S  Q  V  D  Y  G  S  H  F  N  H  A  Y  S  K  L  T  S  P  S  V  S  I  C  L  S  Y  F  H  F  *  S  F  S  F  S  P  G  I  T  S  D  Y  L  R  *  V  C  F  G  F  *  T  L  S  L  T  G  T  A  M  D  *  I  E  T  V  H  G  S  A  F  K  E  D  E  P  E  E  I  I  S  P  F  Y  L  R  S  G  I  L  P  L  L  S  Y  L  S  S  E  L  L  C  I  A  *  L  C  *  F  V  S  T  T  C  N  L  L  D  V  S  V  N  M  I  G  N  S  G  F  V  L  F  T  I  *  L  L  W  E  *  Y  *  P  L  V  L  Y  R  L  Q  V  L  L  L  D  L  Y  L  R  S  E  I  Q  L  *  V  M  Q  L  L  F  M  *  F  K  I  Q  L  *  Y  L   : E  M  E  L  F  R  F  *  R  *  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19092" stop="19098"/>
                    <exon start="19222" stop="19305"/>
                    <exon start="19628" stop="19749"/>
                    <exon start="19999" stop="20325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDCSILAWIVNQITRPPKHLRGLVIGCCAAGNMGNMLLIIVPAVCKEKGSPFGAPDICHTYGMGYASLSMAVCAVFLWSYVYNIVRISSSKSPEEVEEVNNSSISKSVRESSIAALGVSTEPLLQRHDLALSEHQSEQLALPSNRFDDKSQVDYGSHFNHAYSKLTSPSVSICLSYFHF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18516" stop="18713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECTCRRLNLILCFIVHTKGTRYGAFRSVSCSINASYSNSFDNSTWTSSCIRSIRHTWRGCKEAFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18041" e_stop="18112"/>
            <exon e_start="18448" e_stop="18714"/>
            <exon e_start="19019" e_stop="19098"/>
            <exon e_start="19181" e_stop="19305"/>
            <exon e_start="19628" e_stop="19749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.844" e_score="0.996"/>
          <exon-intron don_prob="0.945" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.214" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18041" e_stop="18112" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="18113" i_stop="18447" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="18448" e_stop="18714" e_length="267"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.844">
            <gDNA_intron_boundary i_start="18715" i_stop="19018" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19019" e_stop="19098" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.904">
            <gDNA_intron_boundary i_start="19099" i_stop="19180" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="19181" e_stop="19305" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.214">
            <gDNA_intron_boundary i_start="19306" i_stop="19627" i_length="322"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19628" e_stop="19749" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18041" stop="18112"/>
              <exon start="18448" stop="18714"/>
              <exon start="19019" stop="19098"/>
              <exon start="19181" stop="19305"/>
              <exon start="19628" stop="19749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTCCTTCCTATTAATTTCGAAGTTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAG : GCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAAT : ATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATT : GTGGTTCATGCCTTTGAATATCTTCGTCACTTTTATCGTAGGTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAG : GAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG</gDNA_template>
            <first_frame> K  F  P  S  Y  *  F  R  S  S  K  D  R  G  S  R  M  S  N  R  T  K  I  Q  :  A  Y  C  N  T  *  T  D  T  Q  T  W  S  *  L  T  S  K  H  P  N  F  E  S  A  R  V  D  D  S  T  *  S  S  V  S  S  F  T  R  K  E  L  D  M  G  L  L  D  L  L  V  A  A  S  M  P  V  I  Q  I  L  L  I  T  A  L  G  L  V  L  A  L  D  R  F  A  I  L  G  E  D  A  R  K  H  L  N  N  :  I  V  F  Y  I  C  N  P  S  L  I  S  S  N  L  S  K  T  I  T  Y  E  S  M  K  R  L :   W  F  M  P  L  N  I  F  V  T  F  I  V  G  S  I  L  A  W  I  V  N  Q  I  T  R  P  P  K  H  L  R  G  L  V  I  G  C  C  A  A   : G  N  M  G  N  M  L  L  I  I  V  P  A  V  C  K  E  K  G  S  P  F  G  A  P  D  I  C  H  T  Y  G  M  G  Y  A  S  L  S  M  A </first_frame>
            <second_frame>  S  F  L  P  I  N  F  E  V  L  K  I  V  V  L  E  *  A  I  E  Q  K  F  R :   R  I  V  I  R  K  Q  I  L  K  L  G  L  S  *  Q  V  S  I  R  T  L  R  V  H  V  *  T  T  Q  L  D  P  L  F  H  R  S  H  E  R  N  S  I  W  G  F  *  I  C  *  L  Q  H  Q  C  Q  L  F  K  F  F  *  *  Q  H  L  D  *  F  L  H  *  I  D  S  P  Y  L  E  R  M  Q  G  S  I  *  I  I :   L  C  F  T  Y  A  I  H  H  *  F  Q  A  T  Y  P  K  Q  L  H  T  R  A  *  N  D   : C  G  S  C  L  *  I  S  S  S  L  L  S  *  V  R  F  L  L  G  L  S  I  K  *  Q  D  L  L  N  I  Y  E  A  S  L  *  A  A  V  L  Q  :  E  T  W  A  T  C  F  S  S  *  F  Q  L  F  V  R  R  K  E  A  H  S  E  R  L  I  F  A  I  H  M  G  W  A  M  L  P  F  Q  W   </second_frame>
            <third_frame>   V  S  F  L  L  I  S  K  F  *  R  S  W  F  S  N  E  Q  *  N  K  N  S   : G  V  L  *  Y  V  N  R  Y  S  N  L  V  L  A  D  K  *  A  S  E  L  *  E  C  T  C  R  R  L  N  L  I  L  C  F  I  V  H  T  K  G  T  R  Y  G  A  F  R  S  V  S  C  S  I  N  A  S  Y  S  N  S  F  D  N  S  T  W  T  S  S  C  I  R  S  I  R  H  T  W  R  G  C  K  E  A  F  E  *   : Y  C  V  L  H  M  Q  S  I  T  D  F  K  Q  L  I  Q  N  N  Y  I  R  E  H  E  T  I  :  V  V  H  A  F  E  Y  L  R  H  F  Y  R  R  F  D  S  C  L  D  C  Q  S  N  N  K  T  S  *  T  S  T  R  P  R  Y  R  L  L  C  C  R :   K  H  G  Q  H  A  S  H  H  S  S  S  C  L  *  G  E  R  K  P  I  R  S  A  *  Y  L  P  Y  I  W  D  G  L  C  F  P  F  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18544" stop="18714"/>
                    <exon start="19019" stop="19098"/>
                    <exon start="19181" stop="19305"/>
                    <exon start="19628" stop="19749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSVSSFTRKELDMGLLDLLVAASMPVIQILLITALGLVLALDRFAILGEDARKHLNNIVFYICNPSLISSNLSKTITYESMKRLWFMPLNIFVTFIVGSILAWIVNQITRPPKHLRGLVIGCCAAGNMGNMLLIIVPAVCKEKGSPFGAPDICHTYGMGYASLSMA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21609" PGL_stop="22571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21609" e_stop="21727"/>
            <exon e_start="22241" e_stop="22571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="21609" e_stop="21727" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="21728" i_stop="22240" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22241" e_stop="22571" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21609" stop="21727"/>
              <exon start="22241" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576099" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTGTGATTGGTATTGGTGTTGTCAAAGGTGCTTCATGGTTAGGCTTGGTACATGATGATCCATTGTACAAGTTTATGCTTTTACTTCATTTTGCACTTCCACCAGCAATGAACATTG : CAACTATAACACAGTTGTTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTATGGTCTTATGCATTGGCTTCAGCAGCACTTACACTATGGACAGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</gDNA_template>
            <first_frame> A  C  D  W  Y  W  C  C  Q  R  C  F  M  V  R  L  G  T  *  *  S  I  V  Q  V  Y  A  F  T  S  F  C  T  S  T  S  N  E  H  C :   N  Y  N  T  V  V  W  S  W  *  E  *  V  F  S  D  Y  V  M  V  L  C  I  G  F  S  S  T  Y  T  M  D  S  I  L  H  V  A  C  I  M  S  T  R  K  N  V  R  L  H  V  *  D  Y  T  E  Y  V  I  V  V  L  E  K  N  E  I  R  N  E  L  N  Y  Y  R  R  K  M  M  V  L  L  M  Y  N  K  D  L  H  L  G  N  M  Y  *  F  F  T  S  N  Q  S  I  Y  H  G  *  A  I  Q </first_frame>
            <second_frame>  P  V  I  G  I  G  V  V  K  G  A  S  W  L  G  L  V  H  D  D  P  L  Y  K  F  M  L  L  L  H  F  A  L  P  P  A  M  N  I   : A  T  I  T  Q  L  F  G  A  G  E  S  E  C  S  V  I  M  L  W  S  Y  A  L  A  S  A  A  L  T  L  W  T  A  F  F  M  W  L  V  S  *  A  L  G  K  T  S  D  S  T  C  E  I  I  L  N  M  L  L  S  F  *  K  K  T  R  L  E  M  N  *  I  T  I  G  E  K  *  W  F  Y  L  C  T  I  R  I  C  T  S  E  I  C  I  D  F  L  R  Q  I  N  L  F  T  M  V  K  Q  F   </second_frame>
            <third_frame>   L  *  L  V  L  V  L  S  K  V  L  H  G  *  A  W  Y  M  M  I  H  C  T  S  L  C  F  Y  F  I  L  H  F  H  Q  Q  *  T  L  :  Q  L  *  H  S  C  L  E  L  V  R  V  S  V  Q  *  L  C  Y  G  L  M  H  W  L  Q  Q  H  L  H  Y  G  Q  H  S  S  C  G  L  Y  H  E  H  *  E  K  R  Q  T  P  R  V  R  L  Y  *  I  C  Y  C  R  F  R  K  K  R  D  *  K  *  I  K  L  L  *  E  K  N  D  G  S  T  Y  V  Q  *  G  F  A  P  R  K  Y  V  L  I  F  Y  V  K  S  I  Y  L  P  W  L  S  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21610" stop="21727"/>
                    <exon start="22241" stop="22365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVIGIGVVKGASWLGLVHDDPLYKFMLLLHFALPPAMNIATITQLFGAGESECSVIMLWSYALASAALTLWTAFFMWLVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23850" PGL_stop="24050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23850" e_stop="24050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="23850" e_stop="24050" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23850" stop="24050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCTCAAATCTCAACATTATTCAGGTCGTCAAAATTTCAAAAACACAAATAAAGAAAACAATCTACAAGAGTAAAGACAGTTGAAAGCCTCTCTAATGTCATACAATCCGACTAACATTTCTGTAACTAAATAAAGTTTATGCAAAGTGGAGAAGACGATCGGAGGGGGAAAAAAGGGTGGGTAGGTGGGTGGGGGG</gDNA_template>
            <first_frame> Y  L  L  K  S  Q  H  Y  S  G  R  Q  N  F  K  N  T  N  K  E  N  N  L  Q  E  *  R  Q  L  K  A  S  L  M  S  Y  N  P  T  N  I  S  V  T  K  *  S  L  C  K  V  E  K  T  I  G  G  G  K  K  G  G  *  V  G  G  G </first_frame>
            <second_frame>  I  F  S  N  L  N  I  I  Q  V  V  K  I  S  K  T  Q  I  K  K  T  I  Y  K  S  K  D  S  *  K  P  L  *  C  H  T  I  R  L  T  F  L  *  L  N  K  V  Y  A  K  W  R  R  R  S  E  G  E  K  R  V  G  R  W  V  G   </second_frame>
            <third_frame>   S  S  Q  I  S  T  L  F  R  S  S  K  F  Q  K  H  K  *  R  K  Q  S  T  R  V  K  T  V  E  S  L  S  N  V  I  Q  S  D  *  H  F  C  N  *  I  K  F  M  Q  S  G  E  D  D  R  R  G  K  K  G  W  V  G  G  W  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0057G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32067" PGL_stop="37003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32067" e_stop="32336"/>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34686" e_stop="34780"/>
            <exon e_start="34865" e_stop="34898"/>
            <exon e_start="36058" e_stop="36112"/>
            <exon e_start="36198" e_stop="36240"/>
            <exon e_start="36620" e_stop="37003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.520" acc_prob="0.839" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="32067" e_stop="32336" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.375">
            <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34686" e_stop="34780" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="34898" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36058" e_stop="36112" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36198" e_stop="36240" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.520" acc_prob="0.839">
            <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="36620" e_stop="37003" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32067" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="37003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG : ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTGCACCGTGGAAACATACTCTTGAGG : GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC : GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG : GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGATTAGCACCATATGTGTTTTCATTTTCATGTAATGAAGAAGCTCAACCTG</gDNA_template>
            <first_frame> N  S  L  A  L  L  L  L  V  Q  *  L  K  K  K  L  F  L  K  Q  Q  Q  M  L  S  L  S  S  S  S  L  V  S  F  G  G  I  A  K  P  F  S  A  P  V  R  L  K  C  Q  Y  T  P  L  R  T  T  I  N  N  P  S  D  S  M  A  S  P  K  W  A  Q  K  T  V  T  L  P  P  Q  R  R  G  C  H  L  V  T  S  K  :  I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : L  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S  A  P  W  K  H  T  L  E   : G  P  D  D  M  P  A  H  I  K  S  S  M  F  G  C  N  L  T :   I  P  I  T  D  G  K  L  N  M  G  T  W  Q  :  G  I  W  L  C  E  H  R  D  S  A  T  P  R  R  I  V  I  T  L  N  G  M  *  A  A  K  V  K  C  *  R  R  Q  *  A  T  N  A  Y  L  T  E  T  R  T  C  N  T  I  N  T  L  W  L  *  C  F  S  S  P  F  L  S  I  L  M  C  V  *  *  K  P  L  G  H  F  C  Y  K  T  T  M  *  F  L  C  P  I  F  I  M  T  N  E  F  V  H  G  S  Y  R  S  S  V  A  S  F  Y  G  A  D  *  H  H  M  C  F  H  F  H  V  M  K  K  L  N  L </first_frame>
            <second_frame>  I  H  *  H  Y  Y  F  W  S  N  S  *  K  K  N  C  S  *  N  S  S  K  C  F  L  F  R  L  H  L  *  Y  R  S  V  E  L  Q  S  H  F  R  L  R  S  G  *  S  V  S  I  L  L  *  E  Q  Q  L  I  T  L  L  I  Q  W  L  P  Q  N  G  L  K  K  L  *  L  F  L  L  K  G  E  A  V  I  L  L  H  L  R :   L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  H  R  G  N  I  L  L  R  :  G  Q  M  T  C  P  L  T  L  S  H  R  C  L  A  A  T  S   : R  Y  R  S  Q  M  E  S  *  T  W  E  P  G  R :   A  Y  G  C  V  S  T  V  I  L  L  P  H  A  E  L  *  S  P  L  M  E  C  E  P  L  K  *  N  V  K  E  D  N  E  L  P  T  P  I  L  L  K  R  A  H  V  I  L  *  T  L  S  G  C  D  V  F  L  V  H  F  C  L  Y  *  C  V  C  D  E  S  L  L  A  I  S  V  I  K  P  L  C  S  F  C  V  P  F  S  L  *  P  T  S  L  Y  M  E  V  I  V  P  A  L  H  L  F  M  E  Q  I  S  T  I  C  V  F  I  F  M  *  *  R  S  S  T   </second_frame>
            <third_frame>   F  T  S  T  I  T  F  G  P  I  V  E  K  K  I  V  L  E  T  A  A  N  A  F  S  F  V  F  I  F  S  I  V  R  W  N  C  K  A  I  F  G  S  G  Q  V  K  V  S  V  Y  S  F  E  N  N  N  *  *  P  F  *  F  N  G  F  P  K  M  G  S  K  N  C  N  S  S  S  S  K  A  R  L  S  S  C  Y  I  *   : D  Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C  T  V  E  T  Y  S  *  G :   A  R  *  H  A  R  S  H  *  V  I  D  V  W  L  Q  P  H  :  D  T  D  H  R  W  K  A  K  H  G  N  L  A   : G  H  M  V  V  *  A  P  *  F  C  Y  P  T  Q  N  C  D  H  P  *  W  N  V  S  R  *  S  E  M  L  K  K  T  M  S  Y  Q  R  L  S  Y  *  N  A  H  M  *  Y  Y  K  H  S  L  V  V  M  F  F  *  S  I  S  V  Y  T  D  V  C  V  M  K  A  S  W  P  F  L  L  *  N  H  Y  V  V  S  V  S  H  F  H  Y  D  Q  R  V  C  T  W  K  L  S  F  Q  R  C  I  F  L  W  S  R  L  A  P  Y  V  F  S  F  S  C  N  E  E  A  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32100" stop="32336"/>
                    <exon start="34505" stop="34565"/>
                    <exon start="34686" stop="34780"/>
                    <exon start="34865" stop="34898"/>
                    <exon start="36058" stop="36112"/>
                    <exon start="36198" stop="36240"/>
                    <exon start="36620" stop="36691"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKKLFLKQQQMLSLSSSSLVSFGGIAKPFSAPVRLKCQYTPLRTTINNPSDSMASPKWAQKTVTLPPQRRGCHLVTSKIMKEINQEIAGFKCGLAHLFLQHTSASLTINENYDSDVREDTETFLSRVVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCNLTIPITDGKLNMGTWQGIWLCEHRDSATPRRIVITLNGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34643" e_stop="34780"/>
            <exon e_start="34865" e_stop="35207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34643" e_stop="34780" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="35207" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34505" stop="34565"/>
              <exon start="34643" stop="34780"/>
              <exon start="34865" stop="35207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAA</gDNA_template>
            <first_frame> I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : Q  F  Y  Y  D  *  V  W  L  A  V  C  L  T  S  A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C  T  V  E  T  Y  S  *  G  *  V  C  N  V  I  P  V  I  C  T  A  V  S  F  L  F  W  L  I  R  Y  L  T  G  F  Y  S  R  G  G  N  L  M  G  C  C  R  F  V  G  *  K  L  Y  E  P  K  T  Y  Q  F  L  P  E  L  G  E  T  Q  N  L  E  A  E  L  D  S  L  L  R  L  K  S  S  C  S  G  L  R  C  L  K  T  D  V  P  T  Q  E  T  T  F  S  I  *  *  S  T  N  Y  W   </first_frame>
            <second_frame>  L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  N  S  T  M  T  E  Y  G  *  L  C  V  *  P  V  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S  A  P  W  K  H  T  L  E  G  K  C  V  T  *  S  L  S  S  V  L  L  F  L  F  F  F  G  *  S  G  I  *  L  D  F  I  P  G  V  A  I  *  W  V  A  V  G  L  W  D  E  N  Y  M  S  Q  K  P  I  N  F  C  L  S  L  G  K  L  K  I  L  R  L  S  L  T  L  Y  *  D  L  R  A  R  A  R  A  *  D  A  *  K  P  M  S  Q  L  K  K  P  H  F  Q  Y  D  N  P  Q  I  T  G  </second_frame>
            <third_frame>   Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   I  L  L  *  L  S  M  V  S  C  V  F  N  Q  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  H  R  G  N  I  L  L  R  V  S  V  *  R  N  P  C  H  L  Y  C  C  F  F  S  F  L  V  N  Q  V  F  D  W  I  L  F  Q  G  W  Q  F  N  G  L  L  *  V  C  G  M  K  T  I  *  A  K  N  L  S  I  F  A  *  A  W  G  N  S  K  S  *  G  *  A  *  L  S  I  K  T  *  E  L  V  L  G  P  E  M  L  E  N  R  C  P  N  S  R  N  H  I  F  N  M  I  I  H  K  L  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0057G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32149" e_stop="32336"/>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34686" e_stop="34780"/>
            <exon e_start="34865" e_stop="34874"/>
            <exon e_start="36638" e_stop="36802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32149" e_stop="32336" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.375">
            <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34686" e_stop="34780" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="34874" e_length="10"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34875" i_stop="36637" i_length="1763"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36638" e_stop="36802" e_length="165"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32149" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34874"/>
              <exon start="36638" stop="36802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG : ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTG : CACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCA</gDNA_template>
            <first_frame> L  H  L  *  Y  R  S  V  E  L  Q  S  H  F  R  L  R  S  G  *  S  V  S  I  L  L  *  E  Q  Q  L  I  T  L  L  I  Q  W  L  P  Q  N  G  L  K  K  L  *  L  F  L  L  K  G  E  A  V  I  L  L  H  L  R :   L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  :  H  R  D  S  A  T  P  R  R  I  V  I  T  L  N  G  M  *  A  A  K  V  K  C  *  R  R  Q  *  A  T  N  A  Y  L  T  E  T  R  T  C  N  T  I  N  T  L  W  L  *  C  F  S  S  P </first_frame>
            <second_frame>  F  I  F  S  I  V  R  W  N  C  K  A  I  F  G  S  G  Q  V  K  V  S  V  Y  S  F  E  N  N  N  *  *  P  F  *  F  N  G  F  P  K  M  G  S  K  N  C  N  S  S  S  S  K  A  R  L  S  S  C  Y  I  *   : D  Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C :   T  V  I  L  L  P  H  A  E  L  *  S  P  L  M  E  C  E  P  L  K  *  N  V  K  E  D  N  E  L  P  T  P  I  L  L  K  R  A  H  V  I  L  *  T  L  S  G  C  D  V  F  L  V   </second_frame>
            <third_frame>   S  S  L  V  S  F  G  G  I  A  K  P  F  S  A  P  V  R  L  K  C  Q  Y  T  P  L  R  T  T  I  N  N  P  S  D  S  M  A  S  P  K  W  A  Q  K  T  V  T  L  P  P  Q  R  R  G  C  H  L  V  T  S  K  :  I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : L  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S   : A  P  *  F  C  Y  P  T  Q  N  C  D  H  P  *  W  N  V  S  R  *  S  E  M  L  K  K  T  M  S  Y  Q  R  L  S  Y  *  N  A  H  M  *  Y  Y  K  H  S  L  V  V  M  F  F  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32151" stop="32336"/>
                    <exon start="34505" stop="34565"/>
                    <exon start="34686" stop="34780"/>
                    <exon start="34865" stop="34874"/>
                    <exon start="36638" stop="36645"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLVSFGGIAKPFSAPVRLKCQYTPLRTTINNPSDSMASPKWAQKTVTLPPQRRGCHLVTSKIMKEINQEIAGFKCGLAHLFLQHTSASLTINENYDSDVREDTETFLSRVVPEGTSAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40789" PGL_stop="38172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40789" e_stop="40360"/>
            <exon e_start="39184" e_stop="38172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.790" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40789" e_stop="40360" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.790">
            <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="39184" e_stop="38172" e_length="1013"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40789" stop="40360"/>
              <exon start="39184" stop="38172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGAGTCTCTGTGTCTCTTCCTGTAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG : CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATC</gDNA_template>
            <first_frame> I  *  V  S  V  S  L  P  V  E  R  S  K  K  K  K  *  Y  Q  F  Y  *  Y  S  T  S  S  I  S  S  T  Y  T  L  L  H  F  I  D  Q  K  C  *  I  C  L  H  L  L  N  E  Q  K  G  F  C  C  L  C  V  *  Q  P  F  F  F  *  V  F  L  S  F  E  C  V  C  V  F  *  C  G  D  E  R  V  S  V  E  K  K  K  K  T  K  I  C  L  C  L  S  S  W  V  K  V  Y  *  S  E  V  D  *  K  R  S  L  I  *  L  K  F  D  S  R  N  G  V  G  A  E  *  I  S  A  A  T  R  T  A  T  S  F  S   : A  *  T  M  G  R  M  F  G  K  I  V  L  F  W  K  T  K  R  W  K  A  Y  S  A  F  I  S  Y  S  *  G  Q  F  N  A  K  S  A  E  C  S  P  S  W  W  A  E  *  S  D  G  S  S  F  S  S  T  I  F  T  S  I  I  F  E  F  S  T  P  F  N  S  S  I  T  K  L  F  F  I  *  Q  F  T  R  R  S  F  I  S  Y  V  R  H  W  S  I  C  S  *  D  P  V  G  I  S  S  R  V  L  *  L  H  H  *  A  I  Y  C  S  F  H  T  S  A  *  V  G  P  L  N  Y  S  L  F  T  R  C  A  F  C  S  V  P  L  L  F  C  E  S  *  N  *  H  W  C  Q  *  F  S  N  N  I  L  S  L  S  R  K  S  C  *  Y  S  Q  I  P  C  F  E  G  T  R  *  K  G  T  S  S  V  G  S  F  Y  P  F  I  *  D  Q  V  S  R  P  *  F  K  H  L  Q  A  D  S  R  F  K  F  L  L  S  S  Y  I  C  P  I  L  H  *  P  L  F  I  S  S  F  W  W  K  A  E  R  F  Q  R  N  *  C  L  C  N  *  *  W  E  W  P  A  E  L  A  E  Q  T  I  *  T  R  C  R  G  S  *  S  V  *  S  I  L  W  V  Q  C  *  *  D  C  *  Y  D  A  I  C  G  N  F  *  C  R  I  R  *  I  L  *  H  D  S  F  Y  *  A  Q  R  R  G  N  H  I  N  Y  V  N  S  *  G  N  K  R  R  E  Y  L  *  Y  G  I </first_frame>
            <second_frame>  F  E  S  L  C  L  F  L  *  R  E  A  K  K  R  N  S  I  S  S  T  S  I  V  L  V  A  S  A  V  H  T  L  F  S  I  L  L  T  K  N  V  E  F  V  C  I  C  *  M  S  K  K  D  F  V  V  C  V  F  N  N  H  F  F  F  E  Y  F  *  V  L  S  V  Y  V  C  F  S  V  E  M  K  E  *  V  L  K  R  R  R  K  Q  R  F  V  C  V  *  A  V  G  *  K  C  T  E  V  K  L  I  K  K  G  V  *  F  S  *  S  L  T  V  E  M  G  S  E  Q  N  R  F  P  Q  Q  Q  G  P  P  L  P  S  R  :  H  K  R  W  G  G  C  L  G  R  L  S  C  F  G  R  Q  K  G  G  K  R  I  V  P  S  S  R  I  P  E  A  N  S  M  P  N  Q  Q  N  V  P  Q  A  G  G  L  N  N  Q  T  A  A  L  L  A  P  P  S  S  P  A  S  F  S  N  S  A  L  P  S  T  A  Q  S  P  S  C  F  L  S  S  N  S  P  G  G  P  S  S  A  M  F  A  T  G  P  Y  A  H  E  T  Q  L  V  S  P  P  V  F  S  N  F  T  T  E  P  S  T  A  P  F  T  P  P  P  E  L  A  H  L  T  T  P  S  S  P  D  V  P  F  A  R  F  L  S  S  S  V  K  V  K  T  N  T  G  A  N  D  F  Q  T  T  Y  S  L  Y  P  G  S  P  A  S  T  L  R  S  P  V  S  R  G  P  G  E  R  E  L  P  Q  L  D  P  S  I  P  S  S  E  I  K  Y  P  G  P  D  S  S  T  S  K  L  T  Q  D  S  N  F  F  C  P  A  T  F  A  Q  Y  Y  I  D  H  S  L  F  P  H  S  G  G  R  L  S  V  S  K  E  T  D  A  Y  A  T  N  N  G  N  G  Q  Q  S  W  Q  N  K  P  S  K  Q  D  A  E  E  V  E  A  Y  R  A  S  F  G  F  S  A  D  E  I  V  S  T  T  Q  Y  V  E  I  S  D  V  A  L  D  E  S  F  S  M  T  P  F  T  K  P  R  E  E  E  I  I  L  T  M  S  T  A  E  G  T  K  G  G  N  I  S  N  M  A   </second_frame>
            <third_frame>   L  S  L  C  V  S  S  C  R  E  K  Q  K  K  E  I  V  S  V  L  L  V  *  Y  *  *  H  Q  Q  Y  I  H  S  S  P  F  Y  *  P  K  M  L  N  L  S  A  S  V  E  *  A  K  R  I  L  L  F  V  C  L  T  T  I  F  F  L  S  I  F  E  F  *  V  C  M  C  V  L  V  W  R  *  K  S  K  C  *  K  E  E  E  N  K  D  L  F  V  F  K  Q  L  G  E  S  V  L  K  *  S  *  L  K  K  E  F  D  L  A  E  V  *  Q  *  K  W  G  R  S  R  I  D  F  R  S  N  K  D  R  H  F  L  L  G :   I  N  D  G  E  D  V  W  E  D  C  L  V  L  E  D  K  K  V  E  S  V  *  C  L  H  L  V  F  L  R  P  I  Q  C  Q  I  S  R  M  F  P  K  L  V  G  *  I  I  R  R  Q  L  F  *  L  H  H  L  H  Q  H  H  F  R  I  Q  H  S  L  Q  Q  L  N  H  Q  A  V  F  Y  L  A  I  H  Q  E  V  L  H  Q  L  C  S  P  L  V  H  M  L  M  R  P  S  W  Y  L  L  P  C  S  L  T  S  P  L  S  H  L  L  L  L  S  H  L  R  L  S  W  P  T  *  L  L  P  L  H  Q  M  C  L  L  L  G  S  S  P  L  L  *  K  L  K  L  T  L  V  P  M  I  F  K  Q  H  T  L  F  I  Q  E  V  L  L  V  L  S  D  P  L  F  R  G  D  Q  V  K  G  N  F  L  S  W  I  L  L  S  L  H  L  R  S  S  I  Q  A  L  I  Q  A  P  P  S  *  L  K  I  Q  I  S  S  V  Q  L  H  L  P  N  I  T  L  T  T  L  Y  F  L  I  L  V  E  G  *  A  F  P  K  K  L  M  L  M  Q  L  I  M  G  M  A  S  R  V  G  R  T  N  H  L  N  K  M  Q  R  K  L  K  R  I  E  H  P  L  G  S  V  L  M  R  L  L  V  R  R  N  M  W  K  F  L  M  S  H  *  M  N  P  L  A  *  L  L  L  L  S  P  E  K  R  K  S  Y  *  L  C  Q  Q  L  R  E  Q  K  E  G  I  S  L  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40431" stop="40360"/>
                    <exon start="39184" stop="38174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTVEMGSEQNRFPQQQGPPLPSRHKRWGGCLGRLSCFGRQKGGKRIVPSSRIPEANSMPNQQNVPQAGGLNNQTAALLAPPSSPASFSNSALPSTAQSPSCFLSSNSPGGPSSAMFATGPYAHETQLVSPPVFSNFTTEPSTAPFTPPPELAHLTTPSSPDVPFARFLSSSVKVKTNTGANDFQTTYSLYPGSPASTLRSPVSRGPGERELPQLDPSIPSSEIKYPGPDSSTSKLTQDSNFFCPATFAQYYIDHSLFPHSGGRLSVSKETDAYATNNGNGQQSWQNKPSKQDAEEVEAYRASFGFSADEIVSTTQYVEISDVALDESFSMTPFTKPREEEIILTMSTAEGTKGGNISNMA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48307" PGL_stop="44195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48307" e_stop="47810"/>
            <exon e_start="46811" e_stop="46627"/>
            <exon e_start="46038" e_stop="45838"/>
            <exon e_start="45016" e_stop="44855"/>
            <exon e_start="44738" e_stop="44195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.505" e_score="0.990"/>
          <exon-intron don_prob="0.582" acc_prob="0.335" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="48307" e_stop="47810" e_length="498"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.991">
            <gDNA_intron_boundary i_start="47809" i_stop="46812" i_length="998"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46811" e_stop="46627" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="46626" i_stop="46039" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="46038" e_stop="45838" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.505">
            <gDNA_intron_boundary i_start="45837" i_stop="45017" i_length="821"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45016" e_stop="44855" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.582" acc_prob="0.335">
            <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="44738" e_stop="44195" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48307" stop="47810"/>
              <exon start="46811" stop="46627"/>
              <exon start="46038" stop="45838"/>
              <exon start="45016" stop="44855"/>
              <exon start="44738" stop="44195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCTCTCTTCTTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAGAAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTG : CTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAA : ATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTGTGGTTGTCGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATT : TCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATT : TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACATCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAAGTCTA</gDNA_template>
            <first_frame> S  L  S  L  L  S  L  S  S  N  S  I  F  F  F  S  D  L  H  F  P  R  K  G  E  K  Q  H  I  P  H  A  P  F  S  L  S  C  F  S  L  Y  K  I  K  Q  S  V  M  L  F  S  S  I  T  K  I  *  I  *  I  Y  L  I  G  L  I  R  Y  C  R  S  A  K  L  C  *  Y  L  C  Y  I  L  F  K  K  K  K  N  P  A  P  L  C  *  T  S  W  V  G  D  L  V  L  L  F  W  I  I  N  N  C  C  Y  N  I  Y  S  C  Y  C  *  V  W  R  A  R  R  N  R  L  M  Y  R  I  W  E  H  G  R  *  M  L  L  V  R  W  E  L  L  W  L  I  S  S  L  C  R  P  M  V  M  H  S  L  L  :  L  Q  H  *  L  G  S  T  L  L  *  L  H  L  L  G  W  C  Q  M  P  Q  G  F  P  H  Q  S  M  Y  L  C  G  N  L  S  G  S  Q  L  L  Q  T  C  L  S  Q  G  *  T  *  V  S  C  S  I  Q  S  D  F  T  K :   S  Q  S  *  A  *  F  Q  W  F  A  L  W  N  G  S  F  I  I  N  V  T  R  R  R  L  K  C  L  L  W  L  S  L  S  A  W  V  F  A  Q  *  L  M  S  R  L  T  P  K  V  L  F  V  L  V  L  Q  F  C  Q  H  H  C  N  R  F :   Q  *  A  L  C  R  K  S  T  Q  L  D  P  L  N  Y  *  V  K  L  L  R  F  K  L  A  P  S  L  C  W  V  L  F  A  T  T  I  L  V  E  I  Y  Y  *  T  T  S  I  L  M  V  P  F :   S  L  Y  S  C  R  V  H  *  L  C  S  A  M  *  V  S  I  S  A  S  G  D  S  L  Q  F  P  S  R  F  *  A  T  *  R  P  C  V  S  *  L  *  A  G  C  S  L  N  L  R  *  L  L  R  T  *  W  E  C  S  L  Q  L  R  A  W  *  S  I  V  G  P  W  R  S  K  N  K  P  T  P  R  V  H  T  L  P  K  T  A  *  Q  K  K  S  *  N  Y  *  R  R  E  W  R  R  P  T  S  K  S  V  S  P  R  P  E  I  F  E  V  S  Y  L  V  A  I  I  T  Y  Y  S  F  F  W  I  K  F  A  C  S  L  L  F  L  L  H  Y  L  L  D  I  L  P  F  G  P  N  L  V  T  L  S  C  F  F  S  F  L  I  V  T  E  C  F  V  L  C  P  S  L </first_frame>
            <second_frame>  L  S  L  F  F  L  S  L  Q  I  P  F  F  F  F  Q  I  F  T  S  H  A  K  E  K  N  N  T  S  H  M  L  H  F  L  S  L  V  S  L  S  T  K  *  S  K  V  L  C  F  S  V  V  S  Q  K  Y  K  S  E  S  T  *  L  G  S  F  V  I  V  D  L  Q  N  C  V  D  I  C  V  I  Y  C  L  R  K  K  K  I  L  P  L  S  V  K  R  V  G  *  V  I  W  F  C  Y  F  G  L  S  I  I  V  V  I  I  Y  I  V  V  I  V  K  Y  G  E  R  E  E  I  V  S  C  I  G  Y  G  S  M  G  D  E  C  C  *  F  G  G  N  Y  Y  G  *  *  A  A  Y  V  G  Q  W  L  C  I  H  F  C :   Y  N  I  D  W  V  P  L  C  C  D  C  T  C  W  D  G  V  K  C  H  R  A  F  L  I  K  A  C  T  F  V  G  T  Y  L  V  L  S  C  C  K  H  V  Y  H  R  D  E  L  K  S  H  A  Q  F  S  R  I  L  P   : N  L  K  V  E  H  D  S  S  G  L  H  Y  G  M  G  P  S  *  *  T  L  L  E  G  G  *  N  V  C  C  G  C  R  Y  R  R  G  C  L  H  S  N  *  C  Q  G  *  R  Q  R  F  Y  L  C  L  C  C  S  S  V  N  I  I  A  T  D   : F  N  R  L  F  A  E  K  V  L  N  W  I  L  *  I  I  E  *  N  C  S  D  S  S  L  L  P  P  C  A  G  S  F  L  R  L  L  S  *  W  K  S  I  T  R  L  Q  V  F  L  W  C  H   : F  L  Y  T  P  V  V  F  I  S  C  V  L  Q  C  E  S  V  S  L  H  R  A  I  L  C  S  F  L  P  G  S  R  P  H  E  D  R  V  C  P  D  F  R  L  G  A  L  *  I  C  V  D  F  *  E  H  N  G  N  A  R  C  N  C  G  H  G  D  L  *  L  G  R  G  G  R  K  T  N  Q  H  Q  E  S  T  R  F  Q  K  Q  L  D  R  R  R  A  E  I  I  E  G  G  N  G  E  G  R  R  R  S  R  S  V  Q  G  L  K  F  L  R  S  L  I  *  *  P  S  S  H  I  I  A  S  F  G  S  N  L  H  V  V  Y  Y  F  C  C  I  I  Y  W  T  S  F  H  L  V  P  I  W  *  P  C  L  V  F  F  P  S  *  *  L  L  N  V  L  F  F  V  Q  V   </second_frame>
            <third_frame>   S  L  S  S  F  S  L  F  K  F  H  F  F  F  F  R  S  S  L  P  T  Q  R  R  K  T  T  H  P  T  C  S  I  F  S  L  L  F  L  S  L  Q  N  K  A  K  C  Y  A  F  Q  *  Y  H  K  N  I  N  L  N  L  L  N  W  A  H  S  L  L  *  I  C  K  I  V  L  I  F  V  L  Y  I  V  *  E  K  K  K  S  C  P  S  L  L  N  E  L  G  R  *  F  G  F  A  I  L  D  Y  Q  *  L  L  L  *  Y  I  *  L  L  L  L  S  M  E  S  E  K  K  S  S  H  V  S  D  M  G  A  W  A  M  N  V  V  S  S  V  G  I  I  M  A  N  K  Q  L  M  S  A  N  G  Y  A  F  T  F   : A  T  T  L  T  G  F  H  F  A  V  T  A  L  V  G  M  V  S  N  A  T  G  L  S  S  S  K  H  V  P  L  W  E  L  I  W  F  S  V  V  A  N  M  S  I  T  G  M  N  L  S  L  M  L  N  S  V  G  F  Y  Q  :  I  S  K  L  S  M  I  P  V  V  C  I  M  E  W  V  L  H  N  K  R  Y  S  K  E  V  K  M  S  V  V  V  V  V  I  G  V  G  V  C  T  V  T  D  V  K  V  N  A  K  G  F  I  C  A  C  V  A  V  L  S  T  S  L  Q  Q  I  :  S  I  G  S  L  Q  K  K  Y  S  I  G  S  F  E  L  L  S  K  T  A  P  I  Q  A  C  S  L  L  V  L  G  P  F  C  D  Y  Y  L  S  G  N  L  L  L  D  Y  K  Y  S  Y  G  A  I  :  F  F  I  L  L  S  C  S  L  A  V  F  C  N  V  S  Q  Y  L  C  I  G  R  F  S  A  V  S  F  Q  V  L  G  H  M  K  T  V  C  V  L  T  L  G  W  V  L  F  E  S  A  L  T  F  K  N  I  M  G  M  L  V  A  I  A  G  M  V  I  Y  S  W  A  V  E  V  E  K  Q  T  N  T  K  S  P  H  A  S  K  N  S  L  T  E  E  E  L  K  L  L  K  E  G  M  E  K  A  D  V  E  V  G  Q  S  K  A  *  N  F  *  G  L  L  F  S  S  H  H  H  I  L  *  L  L  L  D  Q  I  C  M  *  F  I  I  F  V  A  L  F  I  G  H  P  S  I  W  S  Q  F  G  D  L  V  L  F  F  F  L  L  N  S  Y  *  M  F  C  S  L  S  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47954" stop="47810"/>
                    <exon start="46811" stop="46627"/>
                    <exon start="46038" stop="45838"/>
                    <exon start="45016" stop="44855"/>
                    <exon start="44738" stop="44388"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLSMESEKKSSHVSDMGAWAMNVVSSVGIIMANKQLMSANGYAFTFATTLTGFHFAVTALVGMVSNATGLSSSKHVPLWELIWFSVVANMSITGMNLSLMLNSVGFYQISKLSMIPVVCIMEWVLHNKRYSKEVKMSVVVVVIGVGVCTVTDVKVNAKGFICACVAVLSTSLQQISIGSLQKKYSIGSFELLSKTAPIQACSLLVLGPFCDYYLSGNLLLDYKYSYGAIFFILLSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWVLFESALTFKNIMGMLVAIAGMVIYSWAVEVEKQTNTKSPHASKNSLTEEELKLLKEGMEKADVEVGQSKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="53512" PGL_stop="51532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53512" e_stop="53457"/>
            <exon e_start="53373" e_stop="53293"/>
            <exon e_start="53202" e_stop="53053"/>
            <exon e_start="51881" e_stop="51532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.706" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="53512" e_stop="53457" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.706" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53456" i_stop="53374" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53373" e_stop="53293" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53292" i_stop="53203" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53202" e_stop="53053" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="53052" i_stop="51882" i_length="1171"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="51881" e_stop="51532" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53512" stop="53457"/>
              <exon start="53373" stop="53293"/>
              <exon start="53202" stop="53053"/>
              <exon start="51881" stop="51532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGAAGCTTAATGTAGCAGATATTGAAGCCACTCTTTCTCGTGTTTGTCAAATG : GTTCTACAAGACAACAACGTAAAGAAAGAAGAGCTTCGTGCCCGCGCAAAGGGGTTAAAGACTCTCGGCAAAATTTTTCAG : AAGGTTAAGCCAGTCAATGAAGTCGAAACTACAGAAAATGGCGTCCATAAGCTGGACGGAAATGAACCAAGCTATGACTCTCGTTCTTCAACTGCATCAGTACCATCTCAAAACAAAGAAGAGGTGCCTTATACAGTATTTGCATCACAG : AGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAACCA</gDNA_template>
            <first_frame> S  G  S  L  M  *  Q  I  L  K  P  L  F  L  V  F  V  K  W :   F  Y  K  T  T  T  *  R  K  K  S  F  V  P  A  Q  R  G  *  R  L  S  A  K  F  F  R :   R  L  S  Q  S  M  K  S  K  L  Q  K  M  A  S  I  S  W  T  E  M  N  Q  A  M  T  L  V  L  Q  L  H  Q  Y  H  L  K  T  K  K  R  C  L  I  Q  Y  L  H  H  R :   A  H  T  W  R  L  H  S  L  P  V  V  N  P  A  I  T  S  P  C  R  L  H  H  Q  V  R  R  D  T  G  R  Q  T  N  G  G  R  R  K  N  L  C  S  L  *  I  C  S  E  F  E  F  L  M  Y  P  *  C  A  I  F  K  A  *  F  L  L  S  R  E  K  L  L  S  Y  C  F  L  *  R  T  A  L  *  L  I  *  L  L  E  C  K  L  C  G  L  *  M  Q  N  I  V  Y  C  I  G  L  F  F  L  F  V  V  L  T  </first_frame>
            <second_frame>  L  E  A  *  C  S  R  Y  *  S  H  S  F  S  C  L  S  N   : G  S  T  R  Q  Q  R  K  E  R  R  A  S  C  P  R  K  G  V  K  D  S  R  Q  N  F  S   : E  G  *  A  S  Q  *  S  R  N  Y  R  K  W  R  P  *  A  G  R  K  *  T  K  L  *  L  S  F  F  N  C  I  S  T  I  S  K  Q  R  R  G  A  L  Y  S  I  C  I  T   : E  P  I  R  G  G  S  T  V  Y  R  W  S  I  Q  L  *  L  P  H  A  D  C  T  T  R  C  A  E  T  Q  V  D  R  Q  M  V  D  A  A  R  I  C  V  A  C  E  F  V  V  S  L  S  F  L  C  I  P  S  V  L  Y  L  K  H  N  S  C  L  A  E  K  S  F  C  H  I  A  F  Y  E  G  L  L  C  N  *  Y  S  Y  *  S  V  S  C  V  A  C  E  C  K  I  L  Y  I  A  L  V  Y  S  S  C  L  L  Y  *  P </second_frame>
            <third_frame>   W  K  L  N  V  A  D  I  E  A  T  L  S  R  V  C  Q  M  :  V  L  Q  D  N  N  V  K  K  E  E  L  R  A  R  A  K  G  L  K  T  L  G  K  I  F  Q  :  K  V  K  P  V  N  E  V  E  T  T  E  N  G  V  H  K  L  D  G  N  E  P  S  Y  D  S  R  S  S  T  A  S  V  P  S  Q  N  K  E  E  V  P  Y  T  V  F  A  S  Q  :  S  P  Y  V  E  A  P  Q  F  T  G  G  Q  S  S  Y  N  F  P  M  P  T  A  P  P  G  A  Q  R  H  R  *  T  D  K  W  W  T  P  Q  E  F  V  *  L  V  N  L  *  *  V  *  V  S  Y  V  S  L  V  C  Y  I  *  S  I  I  L  A  *  Q  R  K  A  S  V  I  L  L  F  M  K  D  C  F  V  I  N  I  V  I  R  V  *  V  V  W  P  V  N  A  K  Y  C  I  L  H  W  S  I  L  L  V  C  C  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53510" stop="53457"/>
                    <exon start="53373" stop="53293"/>
                    <exon start="53202" stop="53053"/>
                    <exon start="51881" stop="51786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKLNVADIEATLSRVCQMVLQDNNVKKEELRARAKGLKTLGKIFQKVKPVNEVETTENGVHKLDGNEPSYDSRSSTASVPSQNKEEVPYTVFASQSPYVEAPQFTGGQSSYNFPMPTAPPGAQRHR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53315" stop="53293"/>
                    <exon start="53202" stop="53053"/>
                    <exon start="51881" stop="51743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSAKFFRRLSQSMKSKLQKMASISWTEMNQAMTLVLQLHQYHLKTKKRCLIQYLHHRAHTWRLHSLPVVNPAITSPCRLHHQVRRDTGRQTNGGRRKNLCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60766" PGL_stop="60251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60766" e_stop="60251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="60766" e_stop="60251" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60766" stop="60251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGAATCATCAATTTCCATCTTGCACTTTATTCATCACAATCTCAAATTTACAGTCCCTTTCGGTTTGTTAGAGGAAAAAAATTGAATTTTTTCTTCTATTTTTGTACGTGGAATTGATGTTTTCTGTTCTTCGATCCCCTTTTTTTCGAACTTCATAGCAGTTTCATTGTTTTAATCTCTTAAATTGCTGACCCTTTCGGTTTGTTAGAGGAAAAATTTGATCTTTTTTTTTTTTGATTTTGTACGTGGGGTTGTTGTTTCCTGTTCTTAGATCCCCTTTTTTGAAACCTCATAGCAGTTTATTGTTTTAATCTCTTAAATTGCTGACCCTTTTGGTTTGTTTAGAGGAAAAATTCGATCTTTTCTTCGATTTTTTGTACGTGGGGTTGTTGTTTTCTGTTCTTCGATTCCCCTTTTTTGCTGACCCTTTTGGTTTGTTAGAGGAAAAATTCGATCTTGGGATTTGTATTTTCTGTTTTTCAACTTGATAGCAGTTTCATCACCATAATCTCAT</gDNA_template>
            <first_frame> H  E  S  S  I  S  I  L  H  F  I  H  H  N  L  K  F  T  V  P  F  G  L  L  E  E  K  N  *  I  F  S  S  I  F  V  R  G  I  D  V  F  C  S  S  I  P  F  F  S  N  F  I  A  V  S  L  F  *  S  L  K  L  L  T  L  S  V  C  *  R  K  N  L  I  F  F  F  F  D  F  V  R  G  V  V  V  S  C  S  *  I  P  F  F  E  T  S  *  Q  F  I  V  L  I  S  *  I  A  D  P  F  G  L  F  R  G  K  I  R  S  F  L  R  F  F  V  R  G  V  V  V  F  C  S  S  I  P  L  F  C  *  P  F  W  F  V  R  G  K  I  R  S  W  D  L  Y  F  L  F  F  N  L  I  A  V  S  S  P  *  S  H </first_frame>
            <second_frame>  M  N  H  Q  F  P  S  C  T  L  F  I  T  I  S  N  L  Q  S  L  S  V  C  *  R  K  K  I  E  F  F  L  L  F  L  Y  V  E  L  M  F  S  V  L  R  S  P  F  F  R  T  S  *  Q  F  H  C  F  N  L  L  N  C  *  P  F  R  F  V  R  G  K  I  *  S  F  F  F  L  I  L  Y  V  G  L  L  F  P  V  L  R  S  P  F  L  K  P  H  S  S  L  L  F  *  S  L  K  L  L  T  L  L  V  C  L  E  E  K  F  D  L  F  F  D  F  L  Y  V  G  L  L  F  S  V  L  R  F  P  F  F  A  D  P  F  G  L  L  E  E  K  F  D  L  G  I  C  I  F  C  F  S  T  *  *  Q  F  H  H  H  N  L   </second_frame>
            <third_frame>   *  I  I  N  F  H  L  A  L  Y  S  S  Q  S  Q  I  Y  S  P  F  R  F  V  R  G  K  K  L  N  F  F  F  Y  F  C  T  W  N  *  C  F  L  F  F  D  P  L  F  F  E  L  H  S  S  F  I  V  L  I  S  *  I  A  D  P  F  G  L  L  E  E  K  F  D  L  F  F  F  *  F  C  T  W  G  C  C  F  L  F  L  D  P  L  F  *  N  L  I  A  V  Y  C  F  N  L  L  N  C  *  P  F  W  F  V  *  R  K  N  S  I  F  S  S  I  F  C  T  W  G  C  C  F  L  F  F  D  S  P  F  L  L  T  L  L  V  C  *  R  K  N  S  I  L  G  F  V  F  S  V  F  Q  L  D  S  S  F  I  T  I  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0057G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 24576 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2048 bytes was the average size of a spliced alignment
$ 15016 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1877 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:31:11
-->
