<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:28:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343680" ref_strand="+" ref_description="SGN-E343680 [cTOF-20-G14]">
      <seq>ttcctattaatttcgaagttctaaagatcgtggttctcgaatgagcaatagaacaaaaattcaggcgtattgtaatacgtaaacagatactcaaacttggtcttagctgacaagtaagcatccgaactttgagagtgcacgtgtagacgactcaacttgatcctctgtttcatcgttcacacgaaaggaactcgatatggggcttttagatctgttagttgcagcatcaatgccagttattcaaattcttttgataacagcacttggactagttcttgcattagatcgattcgccatacttggagaggatgcaaggaagcatttgaataatattgtgttttacatatgcaatccatcactgatttcaagcaacttatccaaaacaattacatacgagagcatgaaacgattgttcgattcttgcttggattgtcaatcaaataacaagacctcctaaacatctacgaggcctcgttataggctgctgtgctgcaggaaacatgggcaacatgcttctcatcatagttccagctgtttgtaaggagaaaggaagcccattcggagcgcctgatatttgccatacatatgggatgggctatgcttccctttcaatggcggtatgcgcggtttttctatggtcttatgtgtataatattgncagaatatcatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="17749" stop="20355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18049" g_stop="18112" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18113" i_stop="18447" i_length="335">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18448" g_stop="18714" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="331" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18715" i_stop="19018" i_length="304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19019" g_stop="19098" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="411" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19099" i_stop="19221" i_length="123">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19222" g_stop="19305" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="495" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19306" i_stop="19627" i_length="322">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.214" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19628" g_stop="19749" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="617" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19750" i_stop="19998" i_length="249">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19999" g_stop="20055" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="674" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E343680" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18049" e_stop="18112"/>
          <exon e_start="18448" e_stop="18714"/>
          <exon e_start="19019" e_stop="19098"/>
          <exon e_start="19222" e_stop="19305"/>
          <exon e_start="19628" e_stop="19749"/>
          <exon e_start="19999" e_stop="20055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTATTAATTTCGAAGTTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAGGTAAAATTTACTTTTTGGTTAACTTCAGTAAAATTGGATGACTTTACTTATGTGTGATAAACTTTAAAGTTAGATAACTTTTATGTGATATAAAATAAATAAGTTATTAGTAAATTCACTTGTGTGGAATAAATATTCCTTCCTATTAATATCATAGTTCGAAATGATTTAGTTTCAGAGCTAAAGATTGTAGTTCTCGAACGAGTAATAGAAAAGATTTTGAAGCATTTTAAGTAGTTAATTTGCATTTTTTAGTTTTTCTTTAATTGTTTGTAAATTCTATTATTGAGTTTCAGTATCATTGTATGATGTATTTTGATTTGTTTTTTTAAAAGGCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAATGTGAGTATATAATATACCTTTCTTGTTGTGTAGTTTGCTCGTTGATTCCCATTTTACTCGTGTTACTTGTACGTGAATTTGTTAGTTTATTCTGTCCTCTGCACTAGTACCATGACCTTTAAAGAGCGGAAAATTATACTGTTTATAGTAGATAGTTGATGTTGAAACCTCTTCAGCTTCTTCGTGTGTTTATTTCTTCATATTTTGAAGAGTTGTTCACCAAGGCTAGAACAGACGAGAAGAATCACCTAGTGTTCTGTCATAGGATATTGATGTTTCCTGTTGTGTACTTTTCGATGAACAGATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATTGTGAGTTTTCGAGATTTCTAATCTCATGTGTTGTTATGTGTTACCCTGTATGTGCCCCCATTAACTCAGTTTGTTATTGTAGGTGGTTCATGCCTTTGAATATCTTCGTCACTTTTATCGTAGGTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAGGTATGTATAAACAGAAAGAACATCAGTCACGAAGACGATGCTTGTAATTGATTTTCCTCAGTTTTCATGTTATGCGGCAACTTCACATTAGTATTCTCGCCAAAATTATGTATTCCCTTCGTTTCAATTTGTTTGTCATACTTTTTGTGTTAGTCCATGACAGGTTTAAGACCACGAGAATGAAGAACATTTTGATACATTCTACGTATCCTTAGTTTATGACCTTTCTTGCTTTCTCAAAATCCCGTGTAAAGTTAAATCCAGACAAACATAAGTCTTCTCTTACTTTCTCCACGTAATTTTGCGCCTGCAATGTGGACAGGAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCGGTATGTGTTTTAATCGATTAGTTTGCTTCACAATACTTTCATATTTGGGATGGTCTCCGATGTGAAATTGCGGTGTTGAATGCTCCATGCCTCGATCTGTTTCAATTTGTTTGTCTGGTTTTGACTTGAGACAGAGGTAGTATCAGCTATGAGCTACCTCTTCACTACGAAGAAAAATAGCAAAAACTATTAACTTTTCATACAAGGAAAATCTAATGCAATGTTTCTCTGGTGATTTCACTTCTTCAGGTATGCGCGGTTTTTCTATGGTCTTATGTGTATAATATTGTCAGAATATCATCAAGT</genome_strand>
        <mrna_strand>TTCCTATTAATTTCGAAGTTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAG...............................................................................................................................................................................................................................................................................................................................................GCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAAT................................................................................................................................................................................................................................................................................................................ATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATT...........................................................................................................................GTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAG..................................................................................................................................................................................................................................................................................................................................GAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG.........................................................................................................................................................................................................................................................GTATGCGCGGTTTTTCTATGGTCTTATGTGTATAATATTGNCAGAATATCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538942" ref_strand="+" ref_description="SGN-E538942 [TUS-58-H3]">
      <seq>cagaatatcatcaagtaagagccccgaagaggttgaagaagttaacaattcctccataagtaaatctgttagagaaagctccatagcagcactcggagtctccacggagccactacttcagagacatgacttagcactatcagagcatcaatctgaacaacttgcactgccctctaatagatttgacgataaatctcaggttgattatggatcacatttcaatcatgcatactcgaaactaactagtccctccgtttcaatctgtttgtcttactttcatttttagtctttttccttttcacctggcataacgagtgattatttaagataagtgtgctttggattttgaactctgagtttaacaggtaccgctatggactaaatcgagacagtacatgggagtgctttcaaagaagatgaacctgaagaaattattagccccttctacctgcggagcggtattctcccactgttatcctatctgtcttctgaactcctttgtattgcatgattgtgttagttcgtatctacaacatgtaacttgttagatgtttccgtcaatatgataggcaactcagggttcgtcttgtttacgatctagttattgtgggagtagtattgaccattggtcctgtatagattgcaggttttgttgttggacttatacctcagatcagaaattcaattataggtgatgcagctcctcttcatgtgattcaagatacagctttgatacttggagatggagctgttccgctttctacgctgatcatgggaggtaaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="19740" stop="21835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20040" g_stop="20779" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20780" i_stop="21488" i_length="709">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21489" g_stop="21535" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="787" r_length="47" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E538942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20040" e_stop="20779"/>
          <exon e_start="21489" e_stop="21535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGTTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAGCGGTATTCTCCCACTGTTATCCTATCTGTCTTCTGAACTCCTTTGTATTGCATGATTGTGTTAGTTCGTATCTACAACATGTAACTTGTTAGATGTTTCCGTCAATATGATAGGCAACTCAGGGTTCGTCTTGTTTACGATCTAGTTATTGTGGGAGTAGTATTGACCATTGGTCCTGTATAGATTGCAGGTTTTGTTGTTGGACTTATACCTCAGATCAGAAATTCAATTATAGGTGATGCAGCTCCTCTTCATGTGATTCAAGATACAGCTTTGATACTTGGGTATGAGACTCTCTCAACTTGTTTAAATAAACTAGCAGAGGTAGTTTTCGTATCTTAATGCACGTATTCAATTTATTCGGAGCTATTAGAGCAGGATCCACTTTTTGGTGAATATGAGTCGAAGCAATAACAAGAATATTTCTAGTAGAACATCTTTCACAATTTTTGGAGAAATGGTTCATTAATAGACTGAGTGATGATTCATTCGACTCATTCACATCCAGATCATGAATGTATAAAACAAAAACTCGAACTTTGAAAGTGCACATCTAGACATCTCAACTCGTCTGCACTGTGTTAGTTGAACATTTTGAATCCATTGTGCCAAAAATTAGCTTAACTACTTGGATAGATGGGATGTTTGAACTGAAAAAGAAAAAGTTCAGTAACATTATAAAACGACATAATATATAAACAAACACTTCAACTTGGCTTTAGCTGATAAGTAAGTTCTCGAGCTTTGAGAGTGCATATCTAGACACGTCAACTCGGTCTATAAACTCAACTGACAACTAAATACTCCAACTCATTCTCATTTTGTAAGTTGAAGTATTCAACTGTCACAGTGAAAACGAGTTGAGGTATCTAGATGTGCATACTCAAAGTACTTACTTGCCAACAACGGTCAAGTTTGAGTGTGCACACTTAAATTGTCAACCCTTTTGTCTGCTTGAAGAAAGTGATATTTACATTTCATCAATGACTGCAGAGATGGAGCTGTTCCGCTTCTAACGCTGATCATGGGAGGTAACCTTT</genome_strand>
        <mrna_strand>CAGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGTTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAGCGGTATTCTCCCACTGTTATCCTATCTGTCTTCTGAACTCCTTTGTATTGCATGATTGTGTTAGTTCGTATCTACAACATGTAACTTGTTAGATGTTTCCGTCAATATGATAGGCAACTCAGGGTTCGTCTTGTTTACGATCTAGTTATTGTGGGAGTAGTATTGACCATTGGTCCTGTATAGATTGCAGGTTTTGTTGTTGGACTTATACCTCAGATCAGAAATTCAATTATAGGTGATGCAGCTCCTCTTCATGTGATTCAAGATACAGCTTTGATACTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAGCTGTTCCGCTTTCTACGCTGATCATGGGAGGTAACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277495" ref_strand="+" ref_description="SGN-E277495 [cLER-3-O16]">
      <seq>agaatatcatcaagtaagagccccgaagaggttgaagaagttaacaattcctccataagtaaatctgttagagaaagctccatagcagcactcggagtctccacggagccactacttcagagacatgacttagcactatcagagcatcaatctgaacaacttgcactgccctctaatagatttgacgataaatctcaggttgattatggatcacatttcaatcatgcatactcgaaactaactagtccctccgtttcaatctggttgtcttactttcatttttagtctttttccttttcacctggcataacgagtgattatttaagataagtgtgctttggattttgaactctgagtttaacaggtaccgctatggactaaatcgagacagtacatgggagtgctttcaaagaagatgaacctgaagaaattattagccccttctacctgcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="19741" stop="20795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20041" g_stop="20495" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E277495" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20041" e_stop="20495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGTTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAG</genome_strand>
        <mrna_strand>AGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGGTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219232" ref_strand="+" ref_description="SGN-E219232 [cLEL-11-J13](-)">
      <seq>gcctgtgattggtattggtgttgtcaaaggtgcttcatggtttaggcttggtacatgatgatccattgtacaagtttatgcttttacttcattttgcacttccaccagcaatgaacattgcaactataacacagttgtttggagctggtgagagtgagtgttcagtgattatgttatggtcttatgcattggcttcagcagcacttacactatggacagcattcttcatgtggcttgtatcatgagcactaggaaaaacgtcagactccacgtgtgagattatactgaatatgttattgtcgttttagaaaaaaacgagattagaaatgaattaaattactataggagaaaaatgatggttctacttatgtacaataaggatttgcacctcggaaatatgtattgattttttacgtcaaatcaatctatttaccatggttaagcaattcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="21309" stop="22871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21609" g_stop="21727" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21728" i_stop="22240" i_length="513">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22241" g_stop="22571" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="451" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="468"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E219232" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21609" e_stop="21727"/>
          <exon e_start="22241" e_stop="22571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGTGATTGGTATTGGTGTTGTCAAAGGTGCTTCATGG-TTAGGCTTGGTACATGATGATCCATTGTACAAGTTTATGCTTTTACTTCATTTTGCACTTCCACCAGCAATGAACATTGGTAAGTTGATTCAACAAGTTATGTTTTTGTTCTCTCATCAACCATCTTTTGTGTTCTATTATCATTTTTATTCGAGTTAGTGGTGAAAAATACACCAAAAGTATCTCAGTTTTTGAGTTTCAAAACGTACCTGACCTATCATGTGAGCGAGTTTCCTTGCTAAAATTTATGGTTCAGGTGTGTTTTGAGGAATAGTTGGTGATAGTTCAGGTAGAAAACTCACACACTTGATAGTTCACGTATGAAACTAAAAGTATCGGAATACTTTGGGTGTGTTTTTTGACCCTTCACTCTGTTTCTGATAGACCTTCGGCTCAAATAAAGAATATAAAAAATTGCATGAAAACAAAATAGAGTAGCCAATATTAAAAATCAAGCAGAGATTGTTATTTCTTTGTGTATATATCAATTCATCATCTGTTAATGAACGTGTCATTTGCTTCATCTTGCTCAATTACGTATAGTTGTTATAGAGAGATTTGACTGTTTTCGTGAACACGGTTTTATTTGCAGCAACTATAACACAGTTGTTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTATGGTCTTATGCATTGGCTTCAGCAGCACTTACACTATGGACAGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</genome_strand>
        <mrna_strand>GCCTGTGATTGGTATTGGTGTTGTCAAAGGTGCTTCATGGTTTAGGCTTGGTACATGATGATCCATTGTACAAGTTTATGCTTTTACTTCATTTTGCACTTCCACCAGCAATGAACATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTATAACACAGTTGTTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTATGGTCTTATGCATTGGCTTCAGCAGCACTTACACTATGGACAGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219647" ref_strand="+" ref_description="SGN-E219647 [cLEL-11-J14](-)">
      <seq>agcattcttcatgtggcttgtatcatgagcactaggaaaaacgtcagactccacgtgtgagattatactgaatatgttattgtcgttttagaaaaaaacgagattagaaatgaattaaattactataggagaaaaatgatggttctacttatgtacaataaggatttgcacctcggaaatatgtattgattttttacgtcaaatcaatctatttaccatggttaagcaattcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="22038" stop="22871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22338" g_stop="22571" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="251"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E219647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22338" e_stop="22571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</genome_strand>
        <mrna_strand>AGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460347" ref_strand="+" ref_description="SGN-E460347 [cPRO-30-D2]">
      <seq>gcaaatcatacgaattattgagtcaaaatgcgacaaagttcttgctcaatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaattgtgaagcctggatgctcacaagatgtcctgaaagctgcacttagtgccatgtcttctgtcacagaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtatttgtcaaacttaatagaattcatagcctccccccctccccccacccttttttcccctccaatcatcttttgcactttgcagaaactttatttagttacagaaatgttagtcggattgtgtgacattacagaggccttcaactgtctttactcttttagtttgtttctttatttgtgtttttgaaattttgacgacccgaataatgttgagatttgagaagattgtatttattgtggtttcaataggtacatgatttattggntccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="24898" stop="23508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24781" g_stop="24769" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="179" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23809" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="618" r_length="439" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="628"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E460347" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24781" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAGAGAGGCTTTCAACTGTCTTTACTCTTGTAGATTGTTTTCTTTATTTGTGTTTTTGAAATTTTGACGACCTGAATAATGTTGAGATTTGAGAAGATAGTATTTATGGTGGTTTCAAT-GGTACATGATTTATTGGTTCC</genome_strand>
        <mrna_strand>GCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCAATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATTGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTAGTGCCATGTCTTCTGTCACAGAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTATTTGTCAAACTTAATAGAATTCATAGCCT--CC-CCCC-CT---------C-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTGCACTTTGCAGAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTGTGACATTACAGAGGCCTTCAACTGTCTTTACTCTTTTAGTTTG-TTTCTTTATTTGTGTTTTTGAAATTTTGACGACCCGAATAATGTTGAGATTTGAGAAGATTGTATTTATTGTGGTTTCAATAGGTACATGATTTATTGGNTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460203" ref_strand="+" ref_description="SGN-E460203 [cPRO-30-C2]">
      <seq>gcaaatcatacgaattattgagtcaaaatgcgacaaagttcttgctcaatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaattgtgaagcctggatgctcacaagatgtcctgaaagctgcacttagtgccatgtcttctgtcacagaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtatttgtcaaacttaatagaattcatagcctccccccctccccccacccttttttcccctccaatcatcttttgcactttgcagaaactttatttagttacagaaatgttagtcggattgtgtgacattacagaggccttcaactgtctttactcttttagtttgtttctttatttgtgtttttgaaattttgacgacccgaataatgttgagatttgagaagattgtatttattgtggtttcaataggtacatgatttattggttccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="24898" stop="23508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24781" g_stop="24769" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="179" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23809" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="618" r_length="439" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E460203" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24781" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAGAGAGGCTTTCAACTGTCTTTACTCTTGTAGATTGTTTTCTTTATTTGTGTTTTTGAAATTTTGACGACCTGAATAATGTTGAGATTTGAGAAGATAGTATTTATGGTGGTTTCAAT-GGTACATGATTTATTGGTTCC</genome_strand>
        <mrna_strand>GCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCAATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATTGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTAGTGCCATGTCTTCTGTCACAGAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTATTTGTCAAACTTAATAGAATTCATAGCCT--CC-CCCC-CT---------C-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTGCACTTTGCAGAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTGTGACATTACAGAGGCCTTCAACTGTCTTTACTCTTTTAGTTTG-TTTCTTTATTTGTGTTTTTGAAATTTTGACGACCCGAATAATGTTGAGATTTGAGAAGATTGTATTTATTGTGGTTTCAATAGGTACATGATTTATTGGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605317" ref_strand="-" ref_description="SGN-E605317 [21234]">
      <seq>gtatggtcgtggtcctggcaaggcatcactcgggaagcctgctgttcatccagccactgtagatttgaagggcaaatcatacgaattattgagtcaaaatgcgacaaagttcttgctcgatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaattgtgaagcctggatgctcacaagatgtcctgaaagctgcacttagtgccatgtcttctgtcacagaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtgtttgtcaacttaatagaattcatagcctccccccacccttttttcccctccaatcatcttttgcactttgcagaaactttatttagttacagaaatgttagtcggattgtgtgacattacagaggccttcaactgtctttactcttttagtttgtttctttatttgtgtttttgaaattttgacgacctgaataatgttgagatttgagaagattgtatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="25152" stop="23543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24852" g_stop="24769" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="250" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23844" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="644" r_length="394" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="645" polyA_stop="665"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E605317" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605317" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24852" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAGAGAGGCTTTCAACTGTCTTTACTCTTGTAGATTGTTTTCTTTATTTGTGTTTTTGAAATTTTGACGACCTGAATAATGTTGAGATTTGAGAAGATAGTATTT</genome_strand>
        <mrna_strand>GTATGGTCGTGGTCCTGGCAAGGCATCACTCGGGAAGCCTGCTGTTCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATTGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTAGTGCCATGTCTTCTGTCACAGAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTGTTTGTC-AACTTAATAGAATTCATAG-----------C-CT---------C-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTGCACTTTGCAGAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTGTGACATTACAGAGGCCTTCAACTGTCTTTACTCTTTTAGTTTG-TTTCTTTATTTGTGTTTTTGAAATTTTGACGACCTGAATAATGTTGAGATTTGAGAAGATTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429175" ref_strand="-" ref_description="SGN-E429175 [STM-51-J13]">
      <seq>aggcatcactgggaaagcctgctgtgcatccagccactgtagatttgaagggcaaatcatacgaattattgagtcaaaatgcgacaaagttcttgctcaatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaattgtgaagcctggatgctcacaagatgtcctgaaagctgcacttagtgccatgtcttctgtcacagaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtatttgtcaaacttaatagaattcatagcctccccccctccccccacccttttttcccctccaatcatcttttgcactttgcagaaactttatttagttacagaaatgttagtcggattgtgtgacattacagaggccttcaactgtctttactcttttagtttgtttctttatttgtgtttttgaaattttgacgacccganataatgttgagatttgagaagattgtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="25132" stop="23543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24832" g_stop="24769" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="230" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23844" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="634" r_length="404" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="645"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E429175" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24832" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAGAGAGGCTTTCAACTGTCTTTACTCTTGTAGATTGTTTTCTTTATTTGTGTTTTTGAAATTTTGACGACCTGA-ATAATGTTGAGATTTGAGAAGATAGTATTT</genome_strand>
        <mrna_strand>AGGCATCACTGGGAAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCAATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATTGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTAGTGCCATGTCTTCTGTCACAGAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTATTTGTCAAACTTAATAGAATTCATAGCCT--CC-CCCC-CT---------C-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTGCACTTTGCAGAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTGTGACATTACAGAGGCCTTCAACTGTCTTTACTCTTTTAGTTTG-TTTCTTTATTTGTGTTTTTGAAATTTTGACGACCCGANATAATGTTGAGATTTGAGAAGATTGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460214" ref_strand="+" ref_description="SGN-E460214 [cPRO-30-E2]">
      <seq>gcaaatcatacgaattattgagtcaaaatgcgacaaagttcttgctcaatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaattgtgaagcctggatgctcacaagatgtcctgaaagctgcacttagtgccatgtcttctgtcacagaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtatttgtcaaacttaatagaattcatagcctccccccctccccccacccttttttcccctccaatcatcttttgcactttgcagaaactttatttagttacagaaatgttagtcggattgtgtgacattacagaggccttcaactgtctttactcttttagnttgtttctttatttgggtttttgaaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="24898" stop="23582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24781" g_stop="24769" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="179" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23882" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="544" r_length="365" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E460214" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.037" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24781" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAGAGAGGCTTTCAACTGTCTTTACTCTTGTAGATTGTTTTCTTTATTTGTGTTTTTGAAATTTTGA</genome_strand>
        <mrna_strand>GCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCAATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATTGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTAGTGCCATGTCTTCTGTCACAGAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTATTTGTCAAACTTAATAGAATTCATAGCCT--CC-CCCC-CT---------C-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTGCACTTTGCAGAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTGTGACATTACAGAGGCCTTCAACTGTCTTTACTCTTTTAGNTTG-TTTCTTTATTTGGGTTTTTGAAATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459055" ref_strand="+" ref_description="SGN-E459055 [cPRO-33-O15]">
      <seq>attgtgactatgcatatgtacttggtcacgtctgctatcatatattggctgctggcctcaatggttacatggctacattgactaacttgaagaatcctgtcaacaagtggcgctgtggggctgctcctataactgctatgatgagtgtgaagcggtatggtcgtggtcctggcaaggcatcacttgggaagcctgctgtgcatccagccactgtagatttgaagggcaaatcatacgaattattgagtcaaaatgcgacaaagttcttgctcgatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaatcgtgaagcctggatgctcacaagatgtcctgaaagctgcacttagtgccatgtcttctgtcacagaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtatttgtcaaacttaatagaattcataggccccccccccttcccccccacccttttttcccctccaatcatctttttgcactttgcagaaactttatttagttacagaaatgttagtttggattgtgtgacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="25997" stop="23643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25697" g_stop="25681" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.520" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25103" g_stop="24987" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="134" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24872" g_stop="24769" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="238" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="404" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24266" g_stop="23943" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="714" r_length="310" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E459055" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25697" e_stop="25681"/>
          <exon e_start="25103" e_stop="24987"/>
          <exon e_start="24872" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTC-TTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAG-TCGGATTGTATGACATTAGAGA</genome_strand>
        <mrna_strand>ATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATATTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCTGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACT..................................................................................................................GCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTAGTGCCATGTCTTCTGTCACAGAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTATTTGTCAAACTTAATAGAATTCATAGGC-CCCC-CCCC-CT-------TCC-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTTGCACTTTGCAGAAACTTTATTTAGTTACAGAAATGTTAGTTTGGATTGTGTGACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729099" ref_strand="+" ref_description="SGN-E729099 [LA19DH12]">
      <seq>tcctggcaaggcatcacttgggaagcctgctgtgcatccagccactgtagatttgaagggcaaatcatacgaattattgagtcaaaatgcgacgaagttcttgctcgatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaatcgtgaagcctggatgctcacaagatgtcctgaaagctgctctgagtgccatgtcttctgtcacagaaatcctttctgtgatggcctcgccttcaagcaatgcgaacacaccattctagatgagaacacccctaaacctcacggaaaatttaggaggcagacatatttgtcaaacttaacagaattcatagcctcccctccccacaccccccacccacctacccaccctttttgtccccctccgatcgtcttctccactttgcataaactttatttagttacagaaatgttagtcggattgtatgacattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="25140" stop="23646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24840" g_stop="24769" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="238" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23946" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="560" r_length="322" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E729099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24840" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTT-TCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAG</genome_strand>
        <mrna_strand>TCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACACCCCCCACCCACCTACCCACCCTTTTTGTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460193" ref_strand="+" ref_description="SGN-E460193 [cPRO-30-A2]">
      <seq>gcaaatcataccaattattgagtcaaaatgcgacaaagttcttgctcaatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccagaattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaattgtgaagcctggatgctcacaagatgtcctgaaagctgcacttactgccatgtcttctgtcacaaaaattctttctgtgatgacctcgccttcaagcaacgtgaacacaccattctagatgagaacaccccttaacctcgcggatatttagaggcagacgtatttgtcaaacttaatagaattcatagcctccccccctccccccacccttttttcccctccaatcatcttttgcactttgcataaactttatttagctacagaaatgttagtcggattgtgtgacattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="24896" stop="23647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24781" g_stop="24769" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="179" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24266" g_stop="23946" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="481" r_length="302" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E460193" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24781" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="23946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAG</genome_strand>
        <mrna_strand>GCAAATCATACCA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACAAAGTTCTTGCTCAATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGAATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATTGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCACTTACTGCCATGTCTTCTGTCACAAAAATTCTTTCTGTGATGACCTCGCCTTCAAGCAACGTGAACACACCATTCTAGATGAGAACACCCCTTAACCTCGCGG-ATATTTA-GAGGCAGACGTATTTGTCAAACTTAATAGAATTCATAGCCT--CC-CCCC-CT---------C-CC--CCCACCCTTTTTT-CCCCTCCAATCATCTTTTGCACTTTGCATAAACTTTATTTAGCTACAGAAATGTTAGTCGGATTGTGTGACATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342156" ref_strand="+" ref_description="SGN-E342156 [cTOF-10-D19]">
      <seq>taactgctatgatgagtgtgaagcggtatggtcgtggtcctggcaaggcatcacttgggaagcctgctgtgcatccagccactgtagatttgaagggcaaatcatacgaattattgagtcaaaatgcgacgaagttcttgctcgatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaatcgtgaagcctggatgctcacaagatgtcctgaaagctgctctgagtgccatgtcttctgtcacagaaatcctttctgtgatggcctcgccttcaagcaatgctaacacaccattctagatgagaacacccctaaacctcacggaaaatttatgaggcagacatatctgtcatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="25172" stop="23779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24991" g_stop="24987" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24872" g_stop="24769" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="109" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="275" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24266" g_stop="24079" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="463" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E342156" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24991" e_stop="24987"/>
          <exon e_start="24872" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="24079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTA</genome_strand>
        <mrna_strand>TAACT..................................................................................................................GCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCTAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTATGAGGCAGACATATCTGTCATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250952" ref_strand="+" ref_description="SGN-E250952 [cLEG-13-H5]">
      <seq>aagaatcccgtcaacaagtggcgctgtggggctgctcctatcaacgctatgatgagtgtgaagcggtgtggtcgtggtcctggcaaggcatcacttgggaagcctgctgtgcatccagccactgtagatttgaagggcaaatcatacgaattattgagtcaaaatgcgacgaagttcttgctcgatgatgtttacagaaacccaggccccctccagtttgatggccctggtgctgacgcaaaggctattactctttgcgttgaagaccaggattacatgggtcgtatcaagaaattgcaagagtatctggacaaggttcgtacaatcgtgaagcctggatgctcacaagatgtcctgaaagctgctctgagtgccatgtcttctgtcacagaaatcctttctgtgatggcctcgccttcaagcaatgcgaacacaccattctagatgagaacacccctaaacctcacggaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="25331" stop="23806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25031" g_stop="24987" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.93"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24872" g_stop="24769" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="149" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24593" g_stop="24428" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="315" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24427" i_stop="24267" i_length="161">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24266" g_stop="24106" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="476" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E250952" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25031" e_stop="24987"/>
          <exon e_start="24872" e_stop="24769"/>
          <exon e_start="24593" e_stop="24428"/>
          <exon e_start="24266" e_stop="24106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAGGTGATGATTGCTCTGCAAGAACATATTTACACTCGAGTAAAATTATAGCATCATTTATTTATCATGACCACCTGCTATCCAAGCTTGACTACATGATTACATTCTCTCGTTTAAACTTTGGTTTTGGTGCATGCCTTCTTATATTATCATCTACTTTCCAGGTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTT</genome_strand>
        <mrna_strand>AAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATCAAC..................................................................................................................GCTATGATGAGTGTGAAGCGGTGTGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG.................................................................................................................................................................GTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378087" ref_strand="+" ref_description="SGN-E378087 [TUS-21-B16]">
      <seq>ttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatattttggctgctggcctcaatggttacatggctacattgactaacttgaagaatcccgtcaacaagtggcgctgtggggctgctcctataactgctatgatgagtgtgaagcggtatggtcgtggtcctggcaaggcatcacttgggaagcctgctgtgcatccagccactgtagatttgaggggcaaatcatacgaattattgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27762" stop="24465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27462" g_stop="27403" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="134" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="245" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="290" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="347" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="452" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.520" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25103" g_stop="24987" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="569" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24872" g_stop="24769" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="673" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24768" i_stop="24594" i_length="175">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24593" g_stop="24583" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="684" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E378087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27462" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="24987"/>
          <exon e_start="24872" e_stop="24769"/>
          <exon e_start="24593" e_stop="24583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGAGTATGTCTATGTCCTGATTTTTTGCTTATTTACAAGCGAAGCCTAAAGAGGAAGCTGACTTTTGTGATTGAAAAGTAGGAATTAGATTTGAATTTTCCCAGGAAAAGCTCTCTTAACAGCTGGCGTTCTAAAGTGAATTGTGTGCATATAACTGATGTGTATCTTTTTTGTGCAGATTATTGAGTC</genome_strand>
        <mrna_strand>TTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACT..................................................................................................................GCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAGGGGCAAATCATACGA...............................................................................................................................................................................ATTATTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366281" ref_strand="+" ref_description="SGN-E366281 [cLPT-1-H14]">
      <seq>aaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatattttggctgctggcctcaatggttacatggctacattgactaacttgaagaatcctgtcaacaagtggcgctgtggggctgctcctataactgctatgatgagtgtgaagcggtatggtcgtggtcctggcaaggcatcacttgggaagcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27577" stop="24511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27277" g_stop="27246" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="143" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="188" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.520" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25103" g_stop="24987" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="467" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24872" g_stop="24811" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="529" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E366281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27277" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="24987"/>
          <exon e_start="24872" e_stop="24811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGC</genome_strand>
        <mrna_strand>AAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCTGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACT..................................................................................................................GCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452579" ref_strand="+" ref_description="SGN-E452579 [cSTS-17-C20]">
      <seq>ttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggtttgctcacacaaggcgtttctgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaagcagctcctcttgcacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttatagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatatattggctgctggcctcaatggttacatggctacattgactaacttgaagaatcctgtcaacaagtggcgctgtggggctgctcctataactgctatgatgagtgtgaagcggtatgggtcgtggtccctgcaaggcatcacttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27755" stop="24518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27455" g_stop="27403" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="127" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="238" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="283" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="340" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="445" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.520" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25103" g_stop="24987" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="562" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24872" g_stop="24818" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="618" r_length="56" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E452579" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27455" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="24987"/>
          <exon e_start="24872" e_stop="24818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTAT-GGTCGTGGTCCTGGCAAGGCATCACTTGGGA</genome_strand>
        <mrna_strand>TTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGTTTGCTCACACAAGGCGTTTCTGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAGCAG.............................................................................................CTCCTCTTGCACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTATAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATATTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCTGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACT..................................................................................................................GCTATGATGAGTGTGAAGCGGTATGGGTCGTGGTCCCTGCAAGGCATCACTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437540" ref_strand="+" ref_description="SGN-E437540 [cSTA-4-I19]">
      <seq>atggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttactctttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggtttgctcacacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttgcacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttatagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcgggggtcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatatattggctgctggcctcaatggttacatggctacattgactaacttgaagatcctgtcaacaagtggcgctgtggggctgctcctatacagctatgatgagtgtgaagcgtatggtcgtggtcctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27953" stop="24532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27653" g_stop="27594" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="154" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="228" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="339" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="441" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="546" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.520" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25103" g_stop="24987" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="661" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24872" g_stop="24832" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="701" r_length="40" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E437540" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27653" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="24987"/>
          <exon e_start="24872" e_stop="24832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAA</genome_strand>
        <mrna_strand>ATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACTCTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGTTTGCTCACACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTGCACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTATAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGGTCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATATTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAG-ATCCTGTCAACAAGTGGCGCTGTGGGGCTGCTCCTAT-ACA..................................................................................................................GCTATGATGAGTGTGAAGC-GTATGGTCGTGGTCCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445566" ref_strand="+" ref_description="SGN-E445566 [cSTA-1-I19]">
      <seq>atggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttactctttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggtttgctcacacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttgcacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttatagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcgggggtcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatatattggctgctggcctcaatggttacatggctacattgactaacttgaagatcctgtcaacaagtggcgctgtggggctgctcctatacagctatgatgagtgtgaagcgtatggtcgtggtcctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27953" stop="24532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27653" g_stop="27594" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="154" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="228" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="339" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="441" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="546" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.520" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25103" g_stop="24987" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="661" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24986" i_stop="24873" i_length="114">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24872" g_stop="24832" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="701" r_length="40" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E445566" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27653" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="24987"/>
          <exon e_start="24872" e_stop="24832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACTGTAAGCTCCTTACTGTATTTTGTACTTGTGTTCCACACTGCCCACTAGCTACCTAAAACAAATAAAGGAAAAGAGGACAAAGATTGACCTTATCACTGTGTGTTTAAATTCTAGGCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAA</genome_strand>
        <mrna_strand>ATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACTCTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGTTTGCTCACACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTGCACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTATAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGGTCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATATTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAG-ATCCTGTCAACAAGTGGCGCTGTGGGGCTGCTCCTAT-ACA..................................................................................................................GCTATGATGAGTGTGAAGC-GTATGGTCGTGGTCCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231985" ref_strand="+" ref_description="SGN-E231985 [cLED-7-O17]">
      <seq>ttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagatttgaacccgaaaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatattttggctgctggcctcaatggttacatggctacattgactaacttgaagaatcccgtcaacaagtggcgctgtggggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27762" stop="24697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27462" g_stop="27403" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="134" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="245" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="290" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="348" r_length="58" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="453" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.520" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25103" g_stop="24997" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="560" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E231985" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27462" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="24997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGA-TTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGC</genome_strand>
        <mrna_strand>TTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTTGAACCCGAAAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201362" ref_strand="+" ref_description="SGN-E201362 [cLEC-4-K24]">
      <seq>tcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagcttctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27722" stop="24774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27422" g_stop="27403" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="94" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="205" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="250" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="307" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="412" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.520" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25103" g_stop="25074" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="442" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E201362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27422" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="25074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTTG</genome_strand>
        <mrna_strand>TCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTTCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325209" ref_strand="+" ref_description="SGN-E325209 [cTOC-1-G11]">
      <seq>atctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27776" stop="24775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27476" g_stop="27403" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="148" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="259" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="304" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="466" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25680" i_stop="25104" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.520" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25103" g_stop="25075" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="495" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E325209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27476" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
          <exon e_start="25103" e_stop="25075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATGTAAGTTTTTTTATTTTTCCTAGCTTTTCTTTTTCTTTCAAGTGAAATAAACTCTCTCCGTCTTATTTTATGTGATGTTGTCCACGTGGCTTTAGAAAAGAAAAGACATTTGAACCTTATGGTCTAAAATAAATATTCGCTCCGTCCTGATTTGTTTGTTTTATTATCCTATTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCCTTTGTGGCAACTATTTAGTTTCAATTTTTCACATGACATGTTTAAGACCACAAGATTGAAGAGCATTTTGGTATATTCTACATATCTTTAGTTTAACACCACAAAATTTAAAACTCTTTTTATTATTTAAATTTCATGTCAAGTCAAAATCAGGCAAATAATTTGAAATTGAAATGGAGGAAGTACTAGATATTTGTATGACTATATATCAACTCATTAATGGTATATGGGGAATTTAAAGTAAGTTGTTTCTACATATAGGAAAATCCGGACAAACAAAAAATGGGAAGTACATTACATAAATTGTGCTGGGACAGAGGGAGTATAAGATTGTTACAATATAAGAAAAATAGTAACAAGAATTACATGCCAGGTACTTGGTCACGTCTGCTATCATATTTT</genome_strand>
        <mrna_strand>ATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTCACGTCTGCTATCATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205668" ref_strand="+" ref_description="SGN-E205668 [cLEC-21-E3]">
      <seq>gaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtatctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28237" stop="25380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27937" g_stop="27886" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="133" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="227" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="301" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="412" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="457" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="619" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E205668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27937" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT</genome_strand>
        <mrna_strand>GAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480250" ref_strand="+" ref_description="SGN-E480250 [cSTD-13-E18]">
      <seq>cccgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttacactttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggtttgctcacacaaggcgtttctgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaagcagctcctcttgcacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttatagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27960" stop="25378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27661" g_stop="27594" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="162" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="236" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="347" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="392" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="449" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="554" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E480250" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27661" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT</genome_strand>
        <mrna_strand>CCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACACTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGTTTGCTCACACAAGGCGTTTCTGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAGCAG.............................................................................................CTCCTCTTGCACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTATAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325961" ref_strand="+" ref_description="SGN-E325961 [cTOC-12-H22]">
      <seq>tatggggctaaaggcatcacatgttgcattagagtgcggtctgctgtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcagttcaggctagggctgaacatgataaaaatcatggtgtcatcctgttgcctgaagggcttattgaaagtattcctgaaatatatgctctattgcaggaaattcatggtttactcaggcaaggtgtttctgctgataacatttcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctatgtgcttggtcatgtttgctaccatattttagctgctggtcttaatggttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27953" stop="25379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27654" g_stop="27594" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="155" r_length="94" r_score="0.883"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.827" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="229" r_length="74" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="340" r_length="111" r_score="0.829"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="0.76"/>
            <acceptor a_prob="0.986" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="385" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="442" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25785" g_stop="25681" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="547" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E325961" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27654" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT</genome_strand>
        <mrna_strand>TATGGGGCTAAAGGCATCACATGTTGCATTAGAGTGCGGTCTGCTGTCACATCCTAATATG.................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG...................................................................................ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG..........................................................................................................................................................................................................................GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG.............................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG........................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208753" ref_strand="+" ref_description="SGN-E208753 [cLEC-51-O5]">
      <seq>aacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggtgaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtatctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28717" stop="25447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28613" g_stop="28607" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="91" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="145" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="226" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="320" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="394" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="505" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="550" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26690" g_stop="26634" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="607" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26633" i_stop="25786" i_length="848">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25785" g_stop="25747" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="646" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E208753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28613" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26634"/>
          <exon e_start="25785" e_stop="25747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTGGTATAGCTTCTGTCTTCCTCTATTCTGGAATGCTAAGTGTTGCATGTAGTATTTCGTATGGTTTTTCTTTATGAGCAAATAAATGTAATATCCCGTCTCTAAACAGGAAAGAAATTTTAGTAAGGATATGTATGTTGTTTTACTACTATAAGCGTTTGAGCTTGTAAGTGAGTAGCTCACTGACTTCTACCAACCTTCTACATTGTTGTTGACTTGTTGTGTCACATTTCTTGGCGAAATTATTTGATGCAAAGTTACAAGAGTGATTTCCTTTTATACAAAATCATACCATCTATCAGAAAGGATAAGGACCACAATATATTTAGACCTTGGAAAATTCAATCAATTTCTCTTTCCTTATATTATGAAATACAGCTCTTCTTCATGACAATTTATGTAGGAATGCTAAATCTTAACGCTGCTTGCTAAATTTTCCTCCCAAAAACAAGGTTATGTTACATGAACTCTTCATTTGCTTTGACTTAGACTTATACTGGGCATGGCTATTTGCCTATTTCATATGGTCCTTCATCAGAAGCTTAAAGTTTGCTGTATTGACTACCTAACCGTGTACACTAGTATTGACTACATTACCATGTCCATGGCTAGTACTAAATTCTATTGAACATATAAGGTTGTTACTGCATATGTCATACAGATCCTTCAGCCATTGCTATGTTTTCACTAGCAATCTTTCTTTGTAAACTTTGTTTGCTTCAAAATCATTGACATTACTCTTCGAATAGCTGTTTCATTTGAAAAAGTGAATTTCACTTGATTTAGATATTTTCTGCCTTGGTCAGCGTTACCTTTACATAACATGTTTTGTATCTTGTATGACTTTACAGAAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATT</genome_strand>
        <mrna_strand>AACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232742" ref_strand="+" ref_description="SGN-E232742 [cLED-8-A8]">
      <seq>gacataacaaacaaaatttgtgatacagatcaagctaaggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagcttctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgataaacttctatctcatctggtggaaacagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27751" stop="26346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27451" g_stop="27403" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="123" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="234" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="279" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26646" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="324" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E232742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27451" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATG</genome_strand>
        <mrna_strand>GACATAACAAACAAAATTTGTGATACAGATCAAGCTAAGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTTCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGATAAACTTCTATCTCATCTGGTGGAAACAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232859" ref_strand="+" ref_description="SGN-E232859 [cLED-8-A12]">
      <seq>ttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="27762" stop="26361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27462" g_stop="27403" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="134" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="245" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26823" g_stop="26779" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="290" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26778" i_stop="26691" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26690" g_stop="26661" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="320" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E232859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27462" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26779"/>
          <exon e_start="26690" e_stop="26661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAGGTAACTAATTCTCCCTTTGGATGGTGTGTTTGGTGATATACGTATGACCTATATTTTAAGTTGATTATCCTTTTATTCTTCCTCACAGATTGAAACCGAGAAACTTCTAGCTCATCTG</genome_strand>
        <mrna_strand>TTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG........................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205767" ref_strand="+" ref_description="SGN-E205767 [cLEC-21-L20]">
      <seq>tgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtatctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="28204" stop="26480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27904" g_stop="27886" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="100" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="194" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="268" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="379" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26823" g_stop="26780" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="423" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E205767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27904" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACA</genome_strand>
        <mrna_strand>TGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG.............................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557739" ref_strand="+" ref_description="SGN-E557739 [16586]">
      <seq>gtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggttaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttactctttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggtttgctcacacaaggcgtttccgctgataagatttcctctcnaactatcaccttgggcatctgcgctctttgagttcttgccggcctttataaaaaaaacagtcctcttgcacccagaatcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29179" stop="26608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="182" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="266" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="320" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="401" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="495" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="569" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27027" g_stop="26917" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="681" r_length="112" r_score="0.928"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26916" i_stop="26824" i_length="93">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26823" g_stop="26800" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="705" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E557739" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="26917"/>
          <exon e_start="26823" e_stop="26800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTC-AACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAGGTACCACTTATTTATTGTTGGAACTGAGTACTCAGGTATGACAGTTAAGTTTCACTTGGATAGTTCTTACATAAAATGCTTATGATGTTGTAGCTCCTCTTACACCCAGAATCAGAT</genome_strand>
        <mrna_strand>GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACTCTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCATGGTTTGCTCACACAAGGCGTTTCCGCTGATAAGATTTCCTCTCNAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGGCCTTTATAAAAAAAACA.............................................................................................GTCCTCTTGCACCCAGAATCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302088" ref_strand="+" ref_description="SGN-E302088 [cLEW-19-M9]">
      <seq>gttaatgctgcaattgctgcatgcaaagctttgaaattggatgcccttattattatcggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggtgaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtatctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaagggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29126" stop="26938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28826" g_stop="28766" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="213" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="267" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="348" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="442" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27319" g_stop="27246" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="516" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27245" i_stop="27028" i_length="218">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27027" g_stop="27019" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="525" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E302088" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28826" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27246"/>
          <exon e_start="27027" e_stop="27019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAGGTAAAATCCAAATAAAAGAGTTCTATTTCTAGCCTGCCTCTCCAGTGTCTGTTATCACACCCTCTTCTCTCTCACCCAAGGAAAGATGAAATGAAGGGATAAGAGAACAGATATACCTAAAAAGAATTACAAACTTTAATTGGCGGGCTTCTATGATTCTTTGTTTGGAAATGAAACTTGGTTTTCACAGTGCCTTGTTATGATCCTGTGTGTTACAGGAAATTCAT</genome_strand>
        <mrna_strand>GTTAATGCTGCAATTGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAAGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG..........................................................................................................................................................................................................................GAAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454121" ref_strand="+" ref_description="SGN-E454121 [cSTS-22-O9]">
      <seq>ggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggttaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttactctttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaccatggtgtgatcctgttgccagaagggcttattgaaagtattcctgaagtatatgctctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29321" stop="26950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29021" g_stop="28958" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="178" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="246" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="330" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="384" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="465" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="559" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.827" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27319" g_stop="27250" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="628" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E454121" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29021" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACT</genome_strand>
        <mrna_strand>GGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACTCTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................AT-AAAACCATGGTGTGATCCTGTTGCCAGAAGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306245" ref_strand="+" ref_description="SGN-E306245 [cLEY-13-F16]">
      <seq>tgcaatggctgcatgcaaagctttgaaattggatgcccttattattatcggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggtgaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtatctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29118" stop="26958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28818" g_stop="28766" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="205" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="259" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="340" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27496" g_stop="27403" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="434" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27402" i_stop="27320" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27319" g_stop="27258" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="496" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E306245" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28818" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27403"/>
          <exon e_start="27319" e_stop="27258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAGGTATAGAAACTTTTCCTTTTCTTTGTTGTCTTTTGAGGTGCTTTTCAAAAAAATTTGTCTGCTCACTAAGTTTTTGGATTTAGATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATAT</genome_strand>
        <mrna_strand>TGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG...................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255160" ref_strand="+" ref_description="SGN-E255160 [cLEG-31-M15]">
      <seq>tttgtggtagacaatctcctggaggacaccaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29334" stop="27143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29334" g_stop="29293" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="100" r_length="42" r_score="0.738"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.74"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="175" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.950" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="289" r_length="114" r_score="0.895"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="357" r_length="68" r_score="0.853"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="0.905"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="495" r_length="54" r_score="0.852"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="576" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27593" i_stop="27497" i_length="97">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27496" g_stop="27442" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="631" r_length="55" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E255160" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29334" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
          <exon e_start="27496" e_stop="27442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTCGTTTTATACCTTTACTGAAAAACTATTGAAGTAATTGTGCTGTTTAGAACTTGTAAGTTCTGTATTAAAAAGGGTTAATAAATAATCTTGCAGGTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAA</genome_strand>
        <mrna_strand>TTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG..............................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG...........................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...............................................................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449108" ref_strand="+" ref_description="SGN-E449108 [cSTS-5-K2]">
      <seq>gtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggttaattcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcattcgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcaggcacatcctaatatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29613" stop="27292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29293" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="96" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="210" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="278" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="362" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="416" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="497" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E449108" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG</genome_strand>
        <mrna_strand>GTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATTCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGGCACATCCTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444121" ref_strand="+" ref_description="SGN-E444121 [cSTA-41-O14]">
      <seq>cacagattttcctanagatcaccaatgatattcttgccaggtataataatcaaggtggttatgacatgctgggtcagacaaaagatcaaattagaacaaccgagcaagttaatgccgcagtggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtctgttttgacacaatatgcaaggttaattcccaactcattagcaatatgtgcactgatgcgctctcaggagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29301" stop="27294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29011" g_stop="28958" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="0.84"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="236" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="320" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="374" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27674" g_stop="27594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="455" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E444121" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29011" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG</genome_strand>
        <mrna_strand>CACAGATTTTCCTANAGATCACCAATGATATTCTTGCCAGGTATAATAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCAGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAGTGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCTGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCAGGAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691248" ref_strand="+" ref_description="SGN-E691248 [LH_Ea05J22]">
      <seq>acgacctactagtgaaaaatatcagaaatggatgcagattacggcacatctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggaaactgccaaagtctctgatgctcagataattaccgagcatccagcaaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgattggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataaaaatcaaggtggttatgacatgctgggccggacaaaagatcaaattagaacaaccgagcaagttaatgctgcaatggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggtgaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgcctttagagtgcactctgcagtcacatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31089" stop="27300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30793" g_stop="30676" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="290" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="403" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="478" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="592" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="660" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="744" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="798" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="27674" g_stop="27600" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="874" r_length="76" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E691248" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30793" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCC-TTAGAGTGCACTCTGCAGTCACATCCT</genome_strand>
        <mrna_strand>ACGACCTACTA-GTGAAAAATATCAGAAATGGATGCAGATTACGGCACATCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGAAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCAAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGATTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAAAATCAAG..............................................................................GTGGTTATGACATGCTGGGCCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTTAGAGTGCACTCTGCAGTCACATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708687" ref_strand="+" ref_description="SGN-E708687 [FA36CA06]">
      <seq>gcgtagtaggtgaaaaatatcagaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtctacagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgctgcaatggctgcatgcaaagctttgaaattggatgcccttattattatcggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggtgaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31090" stop="27313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30790" g_stop="30676" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="288" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="401" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="476" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="590" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="658" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="742" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="796" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="27674" g_stop="27613" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="858" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E708687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30790" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCT</genome_strand>
        <mrna_strand>GCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444182" ref_strand="+" ref_description="SGN-E444182 [cSTA-41-P14]">
      <seq>cacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagcttgttgaaacaaacgtctgttttgacacaatatgcaaggttaattcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcattcgactcatggggcgaaaggcatcacatgttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29311" stop="27326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29011" g_stop="28958" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="236" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="320" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27939" g_stop="27886" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="374" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27885" i_stop="27675" i_length="211">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27674" g_stop="27626" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="423" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E444182" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29011" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27886"/>
          <exon e_start="27674" e_stop="27626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAGGTAATTTCAGGTTCTTCACATCTCTTCCAATTTCTATGGAATATTTGGGTAAATTTTAAATATATGTTACTGGTGGGTTTCATTTCTGTTATATAAATTTGTTTTGATGGTGTTGACTGTCTGTTGATTATGTTCACAACCTTATCGTTTATATTTCCTACCTATGTCTTCTGCAAATGCTTTACTATAACCTGGTATCTTTCCTTTTCAGTACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCT</genome_strand>
        <mrna_strand>CACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGCTTGTTGAAACAAACGTCTGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATTCGACTCATGGGGCGAAAGGCATCACATGTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437723" ref_strand="+" ref_description="SGN-E437723 [cSTA-4-F16]">
      <seq>tgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggttaactcccaactcattagcaatatgtgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="30241" stop="27608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29942" g_stop="29925" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="131" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="206" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="320" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="388" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28415" g_stop="28332" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="472" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28331" i_stop="27940" i_length="392">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27939" g_stop="27908" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="504" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E437723" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29942" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28332"/>
          <exon e_start="27939" e_stop="27908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAGGTATTAGTCCAATTATGTCAATCATATGAAAAGAAACATTCATCTAAGGACTGTTTTTTTAGAATAGACATAGTTAACATCTTACACCTTTCCCTTTGAGAGGCATTGCCATTTAGACTTGTGGTCATGCTCCCCACTTAAACTTTGAGGGTCCTGTATATGGTGGTGTGCATGTTAAGTGTTCTTTTTACTTGTTATTTTATTAGTGATGAAATATGAGGTGAAATACATTCAGCAGGTACCGAGTGTTAAACTTGTAGGTCATTTTGACGGTAGACCTTGTTTTTTTTCTAGTAATGATGCTTTATTGTGTGCTTCAACTGAAAGAAAATCCTAATAAATTATAAAAAAAATCCCTGGGGAACTTATTATTATCTTTGTGGTCATCTTAGGTGAACTCCCAACTCATTAGCAATATGTGCAC</genome_strand>
        <mrna_strand>TGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTCATTAGCAATATGTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457395" ref_strand="+" ref_description="SGN-E457395 [cPRO-2-H21]">
      <seq>gtgaaaaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgaccttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattactgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31081" stop="28078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30781" g_stop="30676" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="279" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="392" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="467" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="581" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="649" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28415" g_stop="28378" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="687" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E457395" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30781" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAA</genome_strand>
        <mrna_strand>GTGAAAAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGACCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACTGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335132" ref_strand="+" ref_description="SGN-E335132 [cTOE-1-G8]">
      <seq>tgagtgagtgtgtgccgtagtaggtgaaaaatatcagaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtctacagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgctgcaatggctgcatgcaaagctttgaaattggatgcccttattattatcggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31103" stop="28087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30803" g_stop="30676" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="302" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="415" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="490" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="604" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="672" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28415" g_stop="28387" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="701" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E335132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30803" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGAGTGTGTG-CGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAGTTCCTGTTACATTAAATGG</genome_strand>
        <mrna_strand>TGAGTGAGTGTGTGCCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347988" ref_strand="+" ref_description="SGN-E347988 [cTOF-31-A1]">
      <seq>agagtgagtgagtgtgtgcgtagtaggtgaaaaatatcagaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtctacagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgctgcaatggctgcatgcaaagctttgaaattggatgcccttattattatcggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggggagtcctgttacattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31107" stop="28305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30807" g_stop="30676" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="305" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="418" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="493" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="607" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="675" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28415" g_stop="28390" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="702" r_length="27" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E347988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30807" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGAGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGGTTGGAG-TTCCTGTTACATTAAA</genome_strand>
        <mrna_strand>AGAGTGAGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTGGGGAGTCCTGTTACATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410111" ref_strand="+" ref_description="SGN-E410111 [PPI-16-G9]">
      <seq>taggtgaacaatatcacaaatggatgcagattacggcatagctagagaaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtacttactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaacttgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcatgcaaagctttgaaattggatgcccttatcattnattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggtttggagttcctgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31084" stop="28305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30784" g_stop="30676" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="285" r_length="175" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="398" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="473" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="588" r_length="115" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="656" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28606" i_stop="28416" i_length="191">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28415" g_stop="28397" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="676" r_length="20" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E410111" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30784" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
          <exon e_start="28415" e_stop="28397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAG-AACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTAC-TACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAAC-TGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATT-ATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAAGTATGCATGGGTTGAGGCTTTTCTCTTTATCTAATTTACTGTTATACTTCTGACTTTTCATGACTTGAAGTGCATAATCTAATTTTTTCTCCAAATGTTTTCCCACTATTCCAAATTTAACCTATGCATTCTCTTCCATTTTATCCTTTCACTATGGAAGGTTCATACTTTATGATTGTTCTTTTCTCCAGGTGG-TTGGAGTTCCTGTTA</genome_strand>
        <mrna_strand>TAGGTGAACAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTNATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...............................................................................................................................................................................................GTGGTTTGGAGTTCCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407081" ref_strand="+" ref_description="SGN-E407081 [PPI-5-N14]">
      <seq>agtgtgtgtagtaggtgaaaaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgaccttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattactgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggatttctgggtggttctgaaggtttatttgcacagaaaaccctatagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcacagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31094" stop="28307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30795" g_stop="30676" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="293" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="406" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="481" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="595" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28607" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="663" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E407081" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30795" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA</genome_strand>
        <mrna_strand>AGTGTGTGTAGTAGGTGAAAAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGACCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACTGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGATTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTATAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCACAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418090" ref_strand="+" ref_description="SGN-E418090 [STM-26-J16]">
      <seq>taggtgaacaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31084" stop="28325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30784" g_stop="30676" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="282" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="395" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="470" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="584" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28625" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="634" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E418090" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30784" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAA</genome_strand>
        <mrna_strand>TAGGTGAACAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582774" ref_strand="+" ref_description="SGN-E582774 [8407]">
      <seq>gaaaaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgaccttcctcctggtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattactgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcatttattggaggggtaacatcaaacactgaatgctgctcaaactgggcgaaacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31079" stop="28330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30779" g_stop="30676" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="277" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="390" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="465" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="580" r_length="115" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="627" r_length="47" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E582774" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30779" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTA-TTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTG-ATGCTGCTC-AACTGGCCGAAACATTTG</genome_strand>
        <mrna_strand>GAAAAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGACCTTCCTCCTGGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACTGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTTATTGGAG...........................................................................................GGGTAACATCAAACACTGAATGCTGCTCAAACTGGGCGAAACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429174" ref_strand="+" ref_description="SGN-E429174 [STM-51-J13]">
      <seq>agtaggtgaacaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaagtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31086" stop="28343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30786" g_stop="30676" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="284" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="397" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="472" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="586" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28643" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="618" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E429174" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30786" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACTG</genome_strand>
        <mrna_strand>AGTAGGTGAACAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAA..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444222" ref_strand="+" ref_description="SGN-E444222 [cSTA-42-K7]">
      <seq>gaaaaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31079" stop="28344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30779" g_stop="30676" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="277" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="390" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="465" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28766" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="579" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28765" i_stop="28675" i_length="91">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28674" g_stop="28644" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="610" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E444222" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30779" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28766"/>
          <exon e_start="28674" e_stop="28644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAGGTATTTATCAGGCAGTTCTTTTGGTTCATTATGGATCTTCTGTGCATACACAGAGAGATATACATCCTAACATATGCATTATATTTTGAAGGGGTAACATCAAACACTGATGCTGCTCAACT</genome_strand>
        <mrna_strand>GAAAAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG...........................................................................................GGGTAACATCAAACACTGATGCTGCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319848" ref_strand="+" ref_description="SGN-E319848 [cTOB-12-N14]">
      <seq>cagagtgagtgagtgtgtgcgtagtaggtgaaaaatatcagaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtctacagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31108" stop="28518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30808" g_stop="30676" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="306" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="419" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="494" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28818" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="556" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E319848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30808" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGAGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCT</genome_strand>
        <mrna_strand>CAGAGTGAGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365524" ref_strand="+" ref_description="SGN-E365524 [cLPT-12-E17]">
      <seq>agtgagtgtgtgcgtagtaggtgaaaaatatcagaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtctacagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgattggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggccggacaaaagatcaaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31101" stop="28540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30801" g_stop="30676" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="299" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="412" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="487" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28840" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="527" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E365524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30801" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAG</genome_strand>
        <mrna_strand>AGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGATTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGCCGGACAAAAGATCAAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358596" ref_strand="+" ref_description="SGN-E358596 [cLHT-22-L4]">
      <seq>acagagagagtgagtgtgtgcgtagtaggtgaaaaatgtcagaaatggatgcagattacggcatagctagagaactctctgatctgcaaaaacttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggtagagctaggtgatgcaaccactgcagcagatccctctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgattggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31109" stop="28552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30809" g_stop="30676" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="307" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="420" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28958" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="495" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28957" i_stop="28880" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28879" g_stop="28852" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="523" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E358596" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30809" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28958"/>
          <exon e_start="28879" e_stop="28852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGTGAGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAGGTAAAATTTGGTTTGGAATGAAGTCAGTATAATTCCTTTTTTCCTTAAGCTTATCATTAGTTGATTTTCCCCCTTAAGGTGGTTATGACATGCTGGGTCGGACAAA</genome_strand>
        <mrna_strand>ACAGAGAGAGTGAGTGTGTGCGTAGTAGGTGAAAAATGTCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAACTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGATTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG..............................................................................GTGGTTATGACATGCTGGGTCGGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479686" ref_strand="+" ref_description="SGN-E479686 [cSTD-10-P10]">
      <seq>gtgtagtaggtgaaaaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgaccttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattactgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31090" stop="28676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30790" g_stop="30676" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="288" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="401" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28976" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E479686" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30790" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTG</genome_strand>
        <mrna_strand>GTGTAGTAGGTGAAAAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGACCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACTGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580489" ref_strand="+" ref_description="SGN-E580489 [5732]">
      <seq>ggaaaaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgaccttcctccttggtcttcaggggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcaggggcaactgccaaagtctctgatgctcagataattactgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctgggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtacttttgcttgggtttctgggtggtttctgaagggtttatttgcacagaaaaccctagagatcaccaatggatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31079" stop="28677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30780" g_stop="30676" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="281" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="396" r_length="115" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28977" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="455" r_length="59" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E580489" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30780" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTT-GTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAG-GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCA-GGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCT-GGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTAC-TTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGG-TTCTGAA-GGTTTATTTGCACAGAAAACCCTAGAGATCACCAAT-GATATTCTT</genome_strand>
        <mrna_strand>GGAAAAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGACCTTCCTCCTTGGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACTGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTTGCTTGGGTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTTCTGAAGGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGGATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442880" ref_strand="+" ref_description="SGN-E442880 [cSTA-35-G14]">
      <seq>gtgtgtagtaggtgaacaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31092" stop="28679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30792" g_stop="30676" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="290" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="403" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28979" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="457" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E442880" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30792" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTC</genome_strand>
        <mrna_strand>GTGTGTAGTAGGTGAACAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440881" ref_strand="+" ref_description="SGN-E440881 [cSTA-28-I20]">
      <seq>taggtgaacaatatcacaaatggatgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31084" stop="28679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30784" g_stop="30676" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="282" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="395" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29032" g_stop="28979" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="449" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E440881" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30784" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
          <exon e_start="29032" e_stop="28979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGGGTAAGTAGTCTTTTGTGTTGGTGTTCTATGTTCTGTGATGCGTCTGCATGTGTATTTTCCTACAAATCTGCTAGACTTTGAGATTGTTTCTCATACTCTCCTGGTTGAAATGTCCTGGCCATCTATTCTTGGGACATCAGGGCAGTAAACCCTTAGAAAGACCTTCTGCTACACCATCTGAGTGTCACTTACATGTCATGTCTACGATGCTGTGTGTCATAATTTTTTCTGCTGAATCTCTCCTTTTCAAATGTCAACAGGTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTC</genome_strand>
        <mrna_strand>TAGGTGAACAATATCACAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG....................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438042" ref_strand="+" ref_description="SGN-E438042 [cSTA-5-P12]">
      <seq>tgcagattacggcatagctagagaactctctgatctgcaaaagcttcgatctcagtatcaacctgagcttcctccttgtcttcagggtactactgtgcgggttgagctaggtgatgcaaccactgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31060" stop="28993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30760" g_stop="30676" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="258" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="371" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E438042" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30760" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG</genome_strand>
        <mrna_strand>TGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTGCGGGTTGAGCTAGGTGATGCAACCACTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440566" ref_strand="+" ref_description="SGN-E440566 [cSTA-17-M20]">
      <seq>tctctgatctgcaaaagcttccatctcagtatcaacctgagccttcctccttgtcttcagggtactacctgtgccgggttgagctaggtgatgcaaccacctgcagcagatcactctggtgaacatgtaataagtcggtcttttcctcacacttatggtcagccattggcccattttctcagggcaactgccaaagtctctgatgctcagataattaccgagcatccagcgaagagggttggaattgttttctgcgggagacaatctcctggtggacataatgtgatatggggtattcatgacgcccttaaaattcacaatcctaacagtactttgcttggttttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31034" stop="28993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30734" g_stop="30676" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30097" g_stop="29925" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="236" r_length="176" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29405" g_stop="29293" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="349" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E440566" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30734" e_stop="30676"/>
          <exon e_start="30097" e_stop="29925"/>
          <exon e_start="29405" e_stop="29293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAG-CTTCCTCCTTGTCTACAGGTTTCTCTTTTTTTTTTTTTTGCATTTTTTTGTGTATTTTTTCGTTGTTATTGCTCTACTATGAACTGTGATTCGTTAGATAAGTTGTTGTTGTTGATGTTGTTGATGCGATGGAGAAGATGATTATGTTTTGCATTTGGAAAAATCGGGAAATAAGTACTGGCGAAATGTATGTATTGTAGATTGTTTCGGTATACTGATGTCCTTAACAATATAATAGATCTGACGTTGTAGATCAGATTCGTTCTTATTCAATCTGTATCGGTACAGTTTTTCGTGTTAGGTATCTCTTGCTGTATATGTTATTCGTAGCGGGCATGCTATAATGTATTTTGAAGTCTTTTTGTTCATTCATCTGGTTATTCTGTTTGATGTGTATTCATTTTGAATCAATTATCAACTTCCACTGGATTGGTAATGAGATGTTCTTCCAATTCTTTGTATCTATAATATCGATATCCACTAAAAAGTTGCTCTTGATAGCTGCTCAGAGAGTTCAATCCTACTTACTCTTATAAGGATGAAAGATTTTTTTGTCTGCAATCCCGAGTTCATTAAATCTGGTTAAATTACAACAGGGTACTA-CTGTG-CGGGTAGAGCTAGGTGATGCAACCA-CTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAGGTATGCATTAATAAATTTTAGTTTACTTCATCAAAGAAAAATTCTACAGTTAGTAATCAATGACATCAGGGTTGCAATCATGAGCTGTTTGCTCCAAGTCTATGTTGGAAGTAGGTGTATGGTAATTCTTTTGTTTAGGTGACTAAAAGTTCCTTCAATTTAGTTACCCATAAAAAAGAAAAAAAACATATCCTTCCTTTTAGTTGTTTTTGGAATTCTATTTGCATTTACTGTCTTTAGAATCTTACTGAGGGGACTAAAATTCTAAAACTAACAGTTCCTTTCAAAATTGATGTATTTATTTATGTATAGACATAAGGATAAAAGTTCAATGAGACATGGATTTCTGTGAAATGAGCTTTATTAATTTTTAAGAGAAATAAACTTGTTTTATATGGGCAAGCTTTTGCCCTTTATTTAATGAGATTTATTACTTTATCAACAACAACAAAAAAAGAGCATCATAAGCATCTCTGATATACTGTTGTTTTCATTGTACTCACTCTTTTTCCTCTATAGGGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG</genome_strand>
        <mrna_strand>TCTCTGATCTGCAAAAGCTTCCATCTCAGTATCAACCTGAGCCTTCCTCCTTGTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACCTGTGCCGGGTTGAGCTAGGTGATGCAACCACCTGCAGCAGATCACTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701381" ref_strand="+" ref_description="SGN-E701381 [FA15DC07]">
      <seq>attctctagcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaccgagtttgtacatggaaagtatcgttcccgcgttgcatctttttatggagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31768" stop="37254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32068" g_stop="32336" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="425" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="514" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="557" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36963" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="901" r_length="344" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E701381" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32068" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGATTAGCACCA</genome_strand>
        <mrna_strand>ATTCTCTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCACCGAGTTTGTACATGGAAAGTATCGTTCCCGCGTTGCATCTTTTTATGGAGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728592" ref_strand="+" ref_description="SGN-E728592 [LA18BC08]">
      <seq>atcctctagcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaacaacgagtttgtacatggaaagtatcgttccagcgttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31768" stop="37239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32068" g_stop="32336" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="425" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="514" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="557" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36939" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="877" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E728592" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32068" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATC</genome_strand>
        <mrna_strand>ATCCTCTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGAACAACGAGTTTGTACATGGAAAGTATCGTTCCAGCGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731696" ref_strand="+" ref_description="SGN-E731696 [LA27DF08]">
      <seq>attcactagcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaaccagtttgtacatggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31768" stop="37217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32068" g_stop="32336" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="425" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="514" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="557" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36917" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="855" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="868"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E731696" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32068" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAA</genome_strand>
        <mrna_strand>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACCAGTTTGTACATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731616" ref_strand="+" ref_description="SGN-E731616 [LA27CF08]">
      <seq>attcactagcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaacgagtttgtacatggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31768" stop="37217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32068" g_stop="32336" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="425" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="514" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="557" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36917" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="855" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="868"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E731616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32068" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAA</genome_strand>
        <mrna_strand>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726867" ref_strand="+" ref_description="SGN-E726867 [LA13AC04]">
      <seq>agcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31775" stop="37179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32075" g_stop="32336" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="323" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="418" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="452" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="507" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="550" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36878" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="809" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="811" polyA_stop="822"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E726867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32075" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGT</genome_strand>
        <mrna_strand>AGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726074" ref_strand="+" ref_description="SGN-E726074 [LA10AH09]">
      <seq>agcactattacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggcttgcacctcacgataccgatcacagatggaaaagctaacatgggaacctgncagggcatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31775" stop="36541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32075" g_stop="32336" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="323" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="418" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="452" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="507" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="550" r_length="43" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E726074" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32075" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG</genome_strand>
        <mrna_strand>AGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTTGCACCTCAC.....................................................................................GATACCGATCACAGATGGAAAAGCTAACATGGGAACCTGNCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282053" ref_strand="+" ref_description="SGN-E282053 [cLES-2-D12]">
      <seq>tacttttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31783" stop="36530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32083" g_stop="32336" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="315" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="410" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="444" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="499" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36230" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="532" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E282053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32083" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGG</genome_strand>
        <mrna_strand>TACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370996" ref_strand="+" ref_description="SGN-E370996 [TUS-29-H15]">
      <seq>tttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttanctgaacgcgcacatgtaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31787" stop="37067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32087" g_stop="32336" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="311" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="406" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="440" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="495" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="538" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36767" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="686" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E370996" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32087" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTA</genome_strand>
        <mrna_strand>TTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTANCTGAACGCGCACATGTAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280599" ref_strand="+" ref_description="SGN-E280599 [cLER-1-H5]">
      <seq>tttggtccaatagttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31787" stop="36382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32087" g_stop="32336" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="311" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="406" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="440" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36082" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="465" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E280599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32087" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACAT</genome_strand>
        <mrna_strand>TTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308676" ref_strand="+" ref_description="SGN-E308676 [cLEZ-13-G21]">
      <seq>ttgaaaaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatcttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31800" stop="36413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32100" g_stop="32336" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="297" r_length="60" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="392" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="426" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="481" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36203" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="487" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E308676" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32100" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACC</genome_strand>
        <mrna_strand>TTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATC-TTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276649" ref_strand="+" ref_description="SGN-E276649 [cLEN-14-G21]">
      <seq>aaaaaaattgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31805" stop="36394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32105" g_stop="32336" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="293" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="388" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="422" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36094" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="459" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E276649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32105" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGAT</genome_strand>
        <mrna_strand>AAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410960" ref_strand="+" ref_description="SGN-E410960 [PPI-18-H9]">
      <seq>aaaaatttgttcttgaaacagcagcaaatgctttctctttcgtcttcatctttaatatcgttcggtggaattgcaaagcctttttcggctccgatcaggttaaagtgtcagtatactcctttgagaaccacaattaataatccttctgattcaatggcttccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaggctgtcatcttgttacatccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgccaccccacgcagaattgtgatcacccttaatggaatgtgaaccactaaagtgaatgttaaagaagtacaatgagctaccaacgcctatcttactgaaatgctcacatgtaatactataacactttctctggntgtgatngttttctaggtcatttcagtctataatgatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31807" stop="37079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32106" g_stop="32336" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="292" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="387" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="421" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="476" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="519" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36824" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="725" r_length="206" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E410960" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32106" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAG-ACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAA-ACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTG</genome_strand>
        <mrna_strand>AAAAATTTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAATATCGTTCGGTGGAATTGCAAAGCCTTTTTCGGCTCCGATCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACCACAATTAATAATCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCCACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAACCACTAAAGTG-AATGTTAAAGAAGTACAATGAGCTACCAACGCCTATCTTACTGAAATGCTCACATGTAATACTATAACACTTTCTCTGGNTGTGATNGTTTTCTAGGTCATTTCAGTCTATAATGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401877" ref_strand="+" ref_description="SGN-E401877 [PPC-5-J15]">
      <seq>ttgaaacagcagcaaatgctttctctttcgtcttcctctttagtatcgttcggtggaattgcaaagccattttcggctccgatcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaggctgtcatcttgttacatccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgccaccccacgcagaattgtgatcaccctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31818" stop="36980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32118" g_stop="32336" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="280" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="375" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="409" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="464" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="507" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36680" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="568" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E401877" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32118" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTA</genome_strand>
        <mrna_strand>TTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCCTCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGATCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCCACCCCACGCAGAATTGTGATCACCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297740" ref_strand="+" ref_description="SGN-E297740 [cLET-28-P4]">
      <seq>caaatgctttctctttcgtcttcatctttagtatcggtcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattaccactcagatgttcgagaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31830" stop="35048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32130" g_stop="32336" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="268" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34748" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="331" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E297740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32130" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATA</genome_strand>
        <mrna_strand>CAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGGTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACCACTCAGATGTTCGAGAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410063" ref_strand="+" ref_description="SGN-E410063 [PPI-15-N16]">
      <seq>ctttctctttcgtcttcatctttaatatcgttcggtggaattgcaaagccattttcggctccgatcaggttaaagtgtcagtatactcctttgagaaccacaattaataatccttctgattcaatggcttccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaggctgtcatcttgttacatccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttcaattctactatgactgagtatggttagctgtgtgtttaaccagtgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgccaccccacgcagaattgtgatcacccttaatggaatgtgaaccactanagtgaaatgttaaagaagtacaatgagctaccaacgcctatcttactgaaatgctcacatgtaatactataaacactttctctggtttgtgatgtttttctagtccatttcagtctataatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31836" stop="37119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32136" g_stop="32336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="262" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34643" g_stop="34780" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="400" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="434" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="489" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="532" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36819" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="736" r_length="204" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E410063" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32136" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34643" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAG-ACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACAC--TCTCTGG-TTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGAT</genome_strand>
        <mrna_strand>CTTTCTCTTTCGTCTTCATCTTTAATATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGATCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACCACAATTAATAATCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC.............................................................................AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCCACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAACCACTANAGTGAAATGTTAAAGAAGTACAATGAGCTACCAACGCCTATCTTACTGAAATGCTCACATGTAATACTATAAACACTTTCTCTGGTTTGTGATGTTTTTCTAGTCCATTTCAGTCTATAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434499" ref_strand="+" ref_description="SGN-E434499 [STM-60-C17]">
      <seq>ctttctctttcgtcttcatctttaatatcgttcggtggaattgcaaagccattttcggctccgatcaggttaaagtgtcagtatactcctttgagaaccacaattaataatccttctgattcaatggcttccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaggctgtcatcttgttacatccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttcaattctactatgactgagtatggttagctgtgtgtttaaccagtgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgccaccccacgcagaattgtgatcacccttaatggaatgtgaaccactaaagtgaaatgttaaagaagtacaatgagctaccaacgcctatcttactgaaatgctcacatgtaatactataacactttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31836" stop="37079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32136" g_stop="32336" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="262" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34643" g_stop="34780" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="400" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="434" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="489" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="532" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36781" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="694" r_length="162" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E434499" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32136" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34643" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAG-ACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGG</genome_strand>
        <mrna_strand>CTTTCTCTTTCGTCTTCATCTTTAATATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGATCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACCACAATTAATAATCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC.............................................................................AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCCACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAACCACTAAAGTGAAATGTTAAAGAAGTACAATGAGCTACCAACGCCTATCTTACTGAAATGCTCACATGTAATACTAT-AACACTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317246" ref_strand="+" ref_description="SGN-E317246 [cTOA-28-B17]">
      <seq>tttcgtcttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcaggtacttgtgctacctcctttcaggtcgtttgatttgagcatcgctagaagcctagaacaatgaatttttcaaacgctttcaccttcatgttggattaaaaaagcagacagttaaagttgntacatctattttcattacnaagttggtctaatctatccttcaatctcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31843" stop="36712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32143" g_stop="32336" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="255" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="350" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="384" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="439" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36412" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="654" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E317246" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32143" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTT</genome_strand>
        <mrna_strand>TTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGNTACATCTATTTTCATTACNAAGTTGGTCTAATCTATCCTTCAATCTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277511" ref_strand="+" ref_description="SGN-E277511 [cLER-3-H17]">
      <seq>ttcatctttagtatcgttcggtggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31850" stop="37080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32150" g_stop="32336" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="248" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="343" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34874" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="353" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34875" i_stop="36637" i_length="1763">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36638" g_stop="36780" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="496" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E277511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32150" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34874"/>
          <exon e_start="36638" e_stop="36780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTG</genome_strand>
        <mrna_strand>TTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370995" ref_strand="+" ref_description="SGN-E370995 [TUS-29-H15](-)">
      <seq>cgttcggtggaattgcaaagccattttcggcttcggtcagggtaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaacgagttagtacatggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31864" stop="37217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32164" g_stop="32336" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="234" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="329" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="363" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="418" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="461" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36917" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="759" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E370995" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32164" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAA</genome_strand>
        <mrna_strand>CGTTCGGTGGAATTGCAAAGCCATTTTCGGCTTCGGTCAGGGTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTAGTACATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312051" ref_strand="+" ref_description="SGN-E312051 [cTOA-11-I7]">
      <seq>tggaattgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31871" stop="37065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32171" g_stop="32336" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="227" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="322" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="356" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="411" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="454" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36765" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="600" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E312051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32171" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATAC</genome_strand>
        <mrna_strand>TGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245626" ref_strand="+" ref_description="SGN-E245626 [cLEF-43-N9]">
      <seq>attgcaaagccattttcggctccggtcaggttaaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31875" stop="37117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32175" g_stop="32336" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="223" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="318" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="352" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="407" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="450" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36817" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="648" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E245626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32175" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTG</genome_strand>
        <mrna_strand>ATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434500" ref_strand="-" ref_description="SGN-E434500 [STM-60-C17]">
      <seq>cgatcaggttaaagtgtcagtatactcctttgagaaccacaataaataatccttctgattcaatggctcccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaggctgtcatcttgttacatccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttcaattctactatgactgagtatggttagctgtgtgtttaaccagtgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgccaccccacgcagaattgtgatcacccttaatggaatgtgaaccactaaagtgaaatgttaaagaagtacaatgagctaccaacgcctatcttactgaaatgctcacatgtaatactataacactttctctggttgtgatgtttttctagtccatttcagtctataatgatgtgtgtgagatgaaagcctcttggccatttctgttataaacctactctgtagtctgtgtgtcccattttacgtggaagttatcgttccagcattgcatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31897" stop="37241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32197" g_stop="32336" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="201" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34643" g_stop="34780" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="373" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="428" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="471" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36889" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="743" r_length="272" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="785"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E434500" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434500" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32197" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34643" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAG-ACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAA-ACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTC</genome_strand>
        <mrna_strand>CGATCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACCACAATAAATAATCCTTCTGATTCAATGGCTCCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC.............................................................................AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCCACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAACCACTAAAGTGAAATGTTAAAGAAGTACAATGAGCTACCAACGCCTATCTTACTGAAATGCTCACATGTAATACTATAACACTTTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCAGTCTATAATGATGTGTGTGAGATGAAAGCCTCTTGGCCATTTCTGTTATAAACCTACTCTGTAGTCTGTGTGTCCCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327403" ref_strand="+" ref_description="SGN-E327403 [cTOC-19-E24]">
      <seq>tcaggttaaagtgtcagtatactcctttgtgaacaacaattaataacccttctgattcaatggcttccccaaaatgggctctaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcaccatacaagtgcttctttaactataaatgaaaattacaactcatatgttctagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31900" stop="35081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32200" g_stop="32336" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="198" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="293" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34879" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="308" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E327403" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32200" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCG</genome_strand>
        <mrna_strand>TCAGGTTAAAGTGTCAGTATACTCCTTTGTGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCTAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCACCATACAAGTGCTTCTTTAACTATAAATGAAAATTACAACTCATATGTTCTAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274847" ref_strand="+" ref_description="SGN-E274847 [cLEN-13-F24]">
      <seq>taaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31906" stop="37117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32206" g_stop="32336" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="192" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="287" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="321" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="376" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="419" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36817" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="617" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E274847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32206" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTG</genome_strand>
        <mrna_strand>TAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276893" ref_strand="+" ref_description="SGN-E276893 [cLEN-14-F12]">
      <seq>taaagtgtcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagcccgctaagtgaaatgttaaagaagacaatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31906" stop="37026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32206" g_stop="32336" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="192" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="287" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="321" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="376" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="419" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36726" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="526" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E276893" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32206" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGC</genome_strand>
        <mrna_strand>TAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCCGCTAAGTGAAATGTTAAAGAAGACAATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231048" ref_strand="+" ref_description="SGN-E231048 [cLED-5-J13]">
      <seq>tcagtatactcctttgagaacaacaattaataacccttctgattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31913" stop="37131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32213" g_stop="32336" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="185" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="280" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="314" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="369" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="412" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36831" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="624" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E231048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32213" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATG</genome_strand>
        <mrna_strand>TCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605259" ref_strand="+" ref_description="SGN-E605259 [21174]">
      <seq>cagtatactccttgagaacacaattataaccttctgattcaatggcttccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaggctgtcatcttgttacatccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgccacccacgcagaattgtgatcacccttaatggaatgtgagccactaaagtgaaatgttaaagaagtacaatgagctaccaacgcctatcttactgaaatgctcacatgtaatactactaaactttctctggttgtgatgtttttctagtccatttcagtctataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31914" stop="37117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32214" g_stop="32336" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="180" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="275" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="309" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="364" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="407" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36817" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="606" r_length="199" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E605259" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32214" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAG-ACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTA-TAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTG</genome_strand>
        <mrna_strand>CAGTATACTCC-TTGAGAAC-ACAATT-ATAA-CCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCCA-CCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCACTAAAGTGAAATGTTAAAGAAGTACAATGAGCTACCAACGCCTATCTTACTGAAATGCTCACATGTAATACTACTAAACTTTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCAGTCTATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404534" ref_strand="+" ref_description="SGN-E404534 [PPC-14-I12]">
      <seq>agttctgattcaatggcttccccaaaatgggctcaaaaaactgtgactcttcctcctcaaaggcgaagctgtcatcttgttacttccaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagatgatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcatattaagtcatcgatgtttggctgcaacctcacgataccgatcacagacggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccactaaagtgaaatgttaagaagtacaatgagctaccaacgcctatcttactgaaatgggcacatgtaatactataacactttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31949" stop="37079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32247" g_stop="32336" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="151" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="246" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="280" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="335" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="378" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36781" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="539" r_length="161" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E404534" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32247" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGG</genome_strand>
        <mrna_strand>AGTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTGACTCTTCCTCCTCAAAGGCGAAGCTGTCATCTTGTTACTTCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGATGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCATATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGACGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCACTAAAGTGAAATGTTAAGAAGTACAATGAGCTACCAACGCCTATCTTACTGAAATGGGCACATGTAATACTAT-AACACTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733629" ref_strand="+" ref_description="SGN-E733629 [LB10CB03]">
      <seq>gattcaatggcttccccaaaatgggctcaaaaaactgtaactcttcctcctcaaaggcgaggctgtcatcttgttacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttctgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="31953" stop="37184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32253" g_stop="32336" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="145" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34686" g_stop="34780" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="240" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="274" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="329" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="372" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36620" g_stop="36883" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="636" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E733629" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32253" e_stop="32336"/>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34686" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAGGTATGACTGTATATATGGGAATTAAGCTTTATGGGTTCAATATTTTAGGTTATTAATGAATTTTGTGGACACCCTTTTGTGTCTTATGTCAATTAACTGATCCATTTTATTCTTTTGCTGTTGTTTTAGTTGGGGGTAGGGGAAGGGAAAGTGGAGAGGGGATTATAAGGTGGGGAATTGGGAATTAAATCCTCACCGACAAGGTGAAAGTTCAGGTTTAACTCAACCAATTGAGCTACTAAGATTTCCGTTGTTATTGTTTTGTTTGCTTTTGATTGCTTGCAAATATGTATTAGATATAATAATTGGGATGTGTTTCTGAGCTGCTGATGATTAAGCTTTTGAGCGATTTTCGTTTCTTGTTTGTTAATTTGCTACCTGACAATTAAGTGAACCAAGTATCACCAGCAAGTTGAAAGTTCAAGTAGTCGCCCAACTGAGTTATTAAGATTCCTTTTTATTGTCTTGTTTGCTTTTGATTACTTGTAAATATTTATTTGATATAATTGGGATGTAGGAAGCTGCTGGTGATTAAGGTTTTGGGCGATTATTCGTTTTTTGTGTGTTAATTTGTTCCCTCACTATTAAGTGAACCAAGTATCACCAACAAGTTGAAAGTTCAAGTAGTTGCTTAACTGAGCTATTAAGATTCCCTTTTTATTGTTTTGTTTACTTTTGATTACTTGCAAATATTTATTAGATATAATTGGGATGTGTTTATGAGCTTCCGATGATTAAGCTTTTGAGCGATTATTCGTTTCTTGTGTGTTAATTTGCTCCCTGGCTATAAAGAGAACCAAGTATCACCAAGAAGTTGAAAGTTCAAGTAGTCACCAAACTGAGCTATTAAGATTCCCTTTTTGTTGCTTTGTTTACTTTTGATTACTTGCAAATATTTACTTTAGATATAATTGGGATGTGTTTCTGAGCTGCCGATGATTAAGCTTTTGAGCGACTATTCATTAATGGACTTTTACTGAGTGAATTTTGTTATTGTTAAACCTATGGGTTCCATGTTTTAATGAGCTCTGCCTGGTTGATCAACTTTTTGTTTTTGTATTAATTCTTGCTTTTCTGAAGAAACTGATGGTAGTGATTAACCCGTTTTGGCGTATCTATGTTAATCCTATTATCCCACTAGTACAGGTAACTATGCCTACCAAGACTTAAGCAAATGGAAAGAAATCACCTAGCTCCTTTATGAATCAAGGTTTTCATCCACTTAATTGACCGCTAGGCTACACTATTGGTTGCTAATCCTGTTATCTCAAATTAAAATTTCAAAATGTAATTGTGTCCATATTTGCTTGATTGACTTTATAAAACTAGGTTCCAGTTGAGGTTTAGGTAACAAAGATGAATAACGTTATGATTCTATTAAACTAACTGAATCTTTCAATCATCCATTTGTCGTTCTAAGATTAACCTGAACTGATATCAACAACAAAACTATAATTCTCAAATAGAGGTTTTTAATATTGCTTAGGAAAAGAATTCATTACAAAAATGACCAAGAACCAAACTATCCTATCTTATTTTGTGCATAGAGAATCAGAATTGAATTGAATGTATCAGTTCAGTAAAGCTTTCTAGTGGTTAGCCGTGGGGTGGGGTGGGTGGAGGGGAGTTGGAAATATATATCATGTCATTAGGCATAATCAACATGGACAGAATTATTTTTGAAGAATGACTATTGAAACTGTGAAAATGTTATCACTGAGTGGCCTATTAGTTGGCTCACAAACTAAACTGACATGTTTTCTTACAAAAGTTGGATGTATTCGAATTCCATTCTTACTCTTCTGGCTTATGAAACATCTTTTGATCAGGTTAAAGGTGATAACCTGACTTCATATACAGTTATTTGGGCAGTTTTTAGCTTTAGTATTTCTAGCTGCCTCACAAGTTATAATTTTTCAGTTGCTAGACTAGTGCTGTTAATATATTGATCCATACAATAAGAAAAATGTTCTTACGATAACCTTATCTAAACTTAAGCATTATGTACCTCGCTAATGGAACAACATGTTTCTATTTTCAAACTAAGCAGTCGCAGAAGAGTGAGCTTCACTTTCTCTAGCCCAATTTTTTGCGTTCGATCCCCCTCCCACTCCAGCAAAAAGATTATATTCTGCTTTTTATTAATACCATCTTAATCTCCTCATCAGATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCC</genome_strand>
        <mrna_strand>GATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC........................................................................................................................TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244528" ref_strand="+" ref_description="SGN-E244528 [cLED-38-O1]">
      <seq>tacatctaagattatgaaggaaattaatcaagagatagcaggcttcaaatgtggccttgctcatctttttcaattctactatgactgagtatggttagctgtgtgtttaaccagtgcagcatacaagtgcttctttaactataaatgaaaattacgactcagatgttcgagaagatacagagacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgagggtaagtgtgtaacgtaatccctgtcatctgtactgctgtttcttttcttttttggttaatcaggtatttgactggattttattccaggggtggcaatttaatgggttgctgtaggtttgtgggatgaaaactatatgagccaaaaacctatcaatttttgcctgagcttggggaaactcaaaatcttgaggctgagcttgactctctattaagacttaagagctcgtgctcgggcctgagatgcttgaaaaccgatgtcccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34196" stop="35462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34505" g_stop="34565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="71" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34643" g_stop="34780" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="209" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34865" g_stop="35162" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="507" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E244528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34505" e_stop="34565"/>
          <exon e_start="34643" e_stop="34780"/>
          <exon e_start="34865" e_stop="35162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTCGTAAGTAATCTTATTCTGACATTTTTCACTTGAAATTCTTGTGGCGTTCTCTTAATTGGCACATGTATTTGCACCAGAATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAAC</genome_strand>
        <mrna_strand>ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC.............................................................................AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733382" ref_strand="+" ref_description="SGN-E733382 [LB04CH09]">
      <seq>cgatacatttcttagtagggttgtcccagaggggacttctgcaccgtggaaacatactcttgaggggccagatgacatgcccgctcacattaagtcatcgatgtttggctgcaacctcacgataccgatcacagatggaaagctaaacatgggaacctggcagggcatatggttgtgtgagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaacgagtttgtacatggaagttatcgttccagcgttgcatcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="34451" stop="37241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34750" g_stop="34780" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34865" g_stop="34898" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="65" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36058" g_stop="36112" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="120" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36198" g_stop="36240" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="163" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36620" g_stop="36954" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="498" r_length="335" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E733382" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34750" e_stop="34780"/>
          <exon e_start="34865" e_stop="34898"/>
          <exon e_start="36058" e_stop="36112"/>
          <exon e_start="36198" e_stop="36240"/>
          <exon e_start="36620" e_stop="36954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACATTTCTTAGTAGGGTTGTCCCAGAGGTAAGATTATATTCTGCCAAGTTGAGTAATAGTCGCTCATTCTTGTGGAGAGTCCCTCATTTTGTTTCGAAATGACAATTTCAGGGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAACTCAAGAAACCACATTTTCAATATGATAATCCACAAATTACTGGAAAATCTAGTGATCTTTTAATTAACAAAACCTAAGTAGTCGAAACTTAAAATTTCCTATTTCAGAACAGCGACAAACTCAAAATATTTCATCCATGCATCTTCATAATGGAGAAAATAACTTACATCTTACAAATAGAAAGTATGGAATCAAAATACATGAGATGAGATCCATCGTAGTCCTCAGGCTGACGTCTACAGACTTGTTCTCAATAGAAGAAAACTGCGATGAAATGGGATGAGAGTCAAGAAATTACAAGAGGAGGATATCTGTACCAAAACATGAGTAGATAGATTTGCAAAGAGAAGAAAAATGAGATAAGAGAGGGAGAGAGATCTATGTTAGATTCAAACTTCAACTACTTCAATCTTATATACTAGCTCAGTTGTTGCATACTTCAGCATCCAGGTTTGCGTCTTCATATGATAAGAAAATGCATATCTAGATCCCTCATTCTCCTTGTACATAAATTTTTCAGAATTAATCACAGTGAAATAATGAAGACTGAAAAACTGACTATATCTTAACATGATAAAAGAATTTTGCTCTTTTACTGCATTTGAGTTGTTCTGGAGACCTTTGCAGTCTGTTTAAATGTTTAGCAAAATTATCTGTTCATTCTTTGTTTACGATTATGACTTTCATTCCTCAGATTGTGTCACACCTACTGATAGTACTGCCTCTTATTTTATCGATATACTATATATCTATTTATATTCTTTTGCATCACCCTCGATCTTCCTGACTGAATTTATATTAAGTTCTTTGTTTCTTTTTTTCCTCCTTGGTTAACTTTTCTTTCCCAATTTTATTTGGTTGCTATTTTGACGTTAGTATGTTGCAATTTTGACAGGGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCACGTCTGACTATCTCCTTTGATTTGATCCATATATTTTTTTCACGCCTTCTCCATATACTGATATTTACCGCGTTTTGGATTTTCAGGATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGA</genome_strand>
        <mrna_strand>CGATACATTTCTTAGTAGGGTTGTCCCAGAG....................................................................................GGGACTTCTGCACCGTGGAAACATACTCTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC.....................................................................................GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230553" ref_strand="+" ref_description="SGN-E230553 [cLEL-35-J19](-)">
      <seq>tggaaagctaaacatgggaacctggcagggcatatggttgtgtaagcaccgtgattctgctaccccacgcagaattgtgatcacccttaatggaatgtgagccgctaaagtgaaatgttaaagaagacaatgagctaccaacgcctatcttactgaaacgcgcacatgtaatactataaacactctctggttgtgatgtttttctagtccatttctgtctatactgatgtgtgtgtgatgaaagcctcttggccatttctgttataaaaccactatgtagtttctgtgtcccattttcattatgaccaacgagtttgtacatggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="+" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35913" stop="37217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36213" g_stop="36240" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379">
            <donor d_prob="0.520" d_score="0.00"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36620" g_stop="36917" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="326" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="345"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="+" ref_id="SGN-E230553" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36213" e_stop="36240"/>
          <exon e_start="36620" e_stop="36917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTTTACCATGGTCTGAACATGGTAATTATAGCAAGGTTCCTTTTTGGATAGTAGAGCTCCAAACTATCACAATGATAAAAAGATTTCCACGATGAAAGTTCTTATCAAGTGTCGATTGTTCTAGTCTATCGAGACAAGACCATTACACGTCAATTTATTGATTCCTGGACTTACAGGTATGATGAGCAACTAACGTTTTCTGAATCTCAGGGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAA</genome_strand>
        <mrna_strand>TGGAAAGCTAAACATGGGAACCTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................GGCATATGGTTGTGTAAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610570" ref_strand="+" ref_description="SGN-E610570 [57734]">
      <seq>gtttgagagaagcaaaaggcaatattgcatggtagcactaatatttagaatattatatagtctcctattggctgaattgcatggttctcttcttttgcttttgttgggggtcttcttctttcgcaggtgatctaacctcactcacgaaaaccccttactgcgtcctcgtttattctgctgttttattcaagaatgtatcgtctgtatatcttatggttccctcgagttatgtatgtcaaaagtcgtagcaatactttcagccattaatgtcattaggtgtgggaatggatcctggaactttttctactgtggattgtgtatgcttgtttcggaatgtcttaggcttgaagtctctgaaaatgtatcttattgaatatgcatttcaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="37938" stop="36946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37638" g_stop="37245" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E610570" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37638" e_stop="37245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGAGAAGCAAAAGGCAACATCGCATGGTAGCACTAATATTTAGAATATTATCTAGTCCTCCTGTTGGCTGAATTGCATGGTTCTCTTCTTTTGCTTTCGTTGGGGGTCTTCTACTTTCGCAGGTGATCTAACCTCACTCACGAAAACTCCCTACTGCATCCTCGTTTATTCTGCTTTTTTATTCAAGAATGTATTGTCTGTATATCTTAAGGTTCTCTCGAGTTATGTATGTCAAAAGTCGTAGCAATATACTTTCAGCCATTAATGTCATTAGGAGTGGGAATGGATCCTGGAACTTTTTGTACTGTGGATTGTGTATGCTTGTTTCGGAATGTCTTAGGCTTGAAGTCTTTGGAAATGTATCTTATTGAATATGCATTTCAATGAAG</genome_strand>
        <mrna_strand>GTTTGAGAGAAGCAAAAGGCAATATTGCATGGTAGCACTAATATTTAGAATATTATATAGT-CTCCTATTGGCTGAATTGCATGGTTCTCTTCTTTTGCTTTTGTTGGGGGTCTTCTTCTTTCGCAGGTGATCTAACCTCACTCACGAAAACCCCTTACTGCGTCCTCGTTTATTCTGCTGTTTTATTCAAGAATGTATCGTCTGTATATCTTATGGTTCCCTCGAGTTATGTATGTCAAAAGTCGTAGC-A-ATACTTTCAGCCATTAATGTCATTAGGTGTGGGAATGGATCCTGGAACTTTTTCTACTGTGGATTGTGTATGCTTGTTTCGGAATGTCTTAGGCTTGAAGTCTCTGAAAATGTATCTTATTGAATATGCATTTCAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464958" ref_strand="+" ref_description="SGN-E464958 [cPRO-19-N9]">
      <seq>tgagatcgttagtacgacacaatatgtggaaatttctgatgtcgcattagatgaatcctttagcatgaccccttttaccaagcccagagaagaggaaatcatattaactatgtcaacagctgagggaacaaaagcagggaatatctctaatatggcatctcctctgcagtgcaaaccagggatgcatcattttgaaggagcaaacaattgcatgaaagatcatacgtctccaaagcaaattgcacctgctaaccatgctatgagtgacgatgaaggtatcttctccaaattgggaactctaagattaagtcgtaaacatgaccatggtttggcaagctccgatgcagagatagactacaggagaggaagaagtttgagagaagcaaaaggcaatattgcatggtagcactaataattagaatattatatagtctcctattggctgaattgcatgggtctcttcttttgcttttgttgggggtcttcttctttcgcaggtgatctaacctcactcacgaaaaccccttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38630" stop="37179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38330" g_stop="38152" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38151" i_stop="37920" i_length="232">
            <donor d_prob="0.817" d_score="0.96"/>
            <acceptor a_prob="0.681" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37919" g_stop="37915" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="183" r_length="4" r_score="0.400"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37914" i_stop="37826" i_length="89">
            <donor d_prob="0.157" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37825" g_stop="37479" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="530" r_length="347" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E464958" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38330" e_stop="38152"/>
          <exon e_start="37919" e_stop="37915"/>
          <exon e_start="37825" e_stop="37479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCTGTGCAAACCAGGTGCAAACAATTGCATGAAAGGTGCATAATTCTTTATTCCCTTGCTAGTTTTGAATAGTAACAGTTGGTATGAAGTTTCAAGCGAATGGATTTTCTTTCTTATCTCTAGCCTTTGCCATGAGGTTCCACAAATTCATGTTTCTTCTGTCGTTGGATTTTATCTCATGCTAGTATTTGTATTTTTCTACTTAGCAGCGTTCAAATTCAGTTTAATATTATTCGTGGAACACAGGCTAAGTAATTATTAGAAGCTCCACCTATACACTGACCATTTCATACTCTTGGGATCCTTAAACAGTTCTCTAGATTATCTGGATATTGTTCAGGACTAAAACTG-ACAAGCTTCCGTCTTCTACACAGATCATACGTCTCCAAAGCAAATTGAACCTGCCAATTATGCTATGAGTGATGATGAAGGTATCTTCTCCAAATTGGGAACTTTAAGATTAAGTCGGAAACATGACTATGGTTTGGCAAGCTCCGATGCAGAGATAGACTACAGGAGAGGAAGAAGTTTGAGAGAAGCAAAAGGCAACATCGCATGGTAGCACTAATATTTAGAATATTATCTAGTCCTCCTGTTGGCTGAATTGCATGGTTCTCTTCTTTTGCTTTCGTTGGGGGTCTTCTACTTTCGCAGGTGATCTAACCTCACTCACGAAAACTCCCTACT</genome_strand>
        <mrna_strand>TGAGATCGTTAGTACGACACAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACCCCTTTTACCAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGCAGGGAATATCTCTAATATGGCATCTCCTCTGCAGTGCAAACCAG........................................................................................................................................................................................................................................G-GAT.........................................................................................GCATCATTTTGAAGGAGCAAACAATTGCATGAAAGATCATACGTCTCCAAAGCAAATTGCACCTGCTAACCATGCTATGAGTGACGATGAAGGTATCTTCTCCAAATTGGGAACTCTAAGATTAAGTCGTAAACATGACCATGGTTTGGCAAGCTCCGATGCAGAGATAGACTACAGGAGAGGAAGAAGTTTGAGAGAAGCAAAAGGCAATATTGCATGGTAGCACTAATAATTAGAATATTATATAGT-CTCCTATTGGCTGAATTGCATGGGTCTCTTCTTTTGCTTTTGTTGGGGGTCTTCTTCTTTCGCAGGTGATCTAACCTCACTCACGAAAACCCCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479227" ref_strand="+" ref_description="SGN-E479227 [cSTD-9-M7]">
      <seq>tctggtggaaggctgagccgtttccaaagaaaccgatgcttattcaactaataatgggaatggccagcagagttggcagaacaaaccatctaaacaagatgcagaagaagtagaagcgtatagagcatcctttgggttcagtgctgatgaagattgttagtacgacacaatatgtggaaatttctgatgtcgcattagatgaaatcctttagcatgactccttttactaagcccagagaagaggaaatcatattaactatgtcaacagctgagggaacaaaaggagggaatatctctaatatggcatctcctctgcagtgcaaaccagggatgcatcattttgaaggagcaaacaattgctgaaagatcatacgtctccaagcaaattgaacctgccaaccatgctatgagtgatgatgaaggtatcttctccaattgggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38776" stop="37412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38476" g_stop="38152" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38151" i_stop="37920" i_length="232">
            <donor d_prob="0.817" d_score="0.98"/>
            <acceptor a_prob="0.681" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37919" g_stop="37915" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="332" r_length="4" r_score="0.400"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37914" i_stop="37826" i_length="89">
            <donor d_prob="0.157" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37825" g_stop="37711" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="445" r_length="113" r_score="0.783"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E479227" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38476" e_stop="38152"/>
          <exon e_start="37919" e_stop="37915"/>
          <exon e_start="37825" e_stop="37711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGGAAGGCTGAG-CGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATG-AGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATG-AATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCTGTGCAAACCAGGTGCAAACAATTGCATGAAAGGTGCATAATTCTTTATTCCCTTGCTAGTTTTGAATAGTAACAGTTGGTATGAAGTTTCAAGCGAATGGATTTTCTTTCTTATCTCTAGCCTTTGCCATGAGGTTCCACAAATTCATGTTTCTTCTGTCGTTGGATTTTATCTCATGCTAGTATTTGTATTTTTCTACTTAGCAGCGTTCAAATTCAGTTTAATATTATTCGTGGAACACAGGCTAAGTAATTATTAGAAGCTCCACCTATACACTGACCATTTCATACTCTTGGGATCCTTAAACAGTTCTCTAGATTATCTGGATATTGTTCAGGACTAAAACTG-ACAAGCTTCCGTCTTCTACACAGATCATACGTCTCCAAAGCAAATTGAACCTGCCAATTATGCTATGAGTGATGATGAAGGTATCTTCTCCAAATTGGGAACTT</genome_strand>
        <mrna_strand>TCTGGTGGAAGGCTGAGCCGTTTCCAAAGAAACCGATGCTTATTCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAAGAAGTAGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAAGATTGTTAGTACGACACAATATGTGGAAATTTCTGATGTCGCATTAGATGAAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCAGTGCAAACCAG........................................................................................................................................................................................................................................G-GAT.........................................................................................GCATCATTTTGAAGGAGCAAACAATTGCT-GAAAGATCATACGTCTCC-AAGCAAATTGAACCTGCCAACCATGCTATGAGTGATGATGAAGGTATCTTCTCC-AATTGGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452313" ref_strand="+" ref_description="SGN-E452313 [cSTS-16-K10]">
      <seq>ttcacacctccgcctgagttggcccacttaactactccctcttcaccagatgtgcctttcgctcggttcctctcctcttctgtgaaagttaaaaccaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcgaggggaccaggtgagagggaacttcctcaattggatccttctatcccttcatccgagatcaagtatccaggccctgattcaagcacctccaagttgactcaagattcaaatttcttctgtccagctacatttgcccaatattacattgaccactctttatttcctcattctggtggaaggctgagcgtttccaaagaagccgatgcttattccactaataatgggaatggccagcagagttggcagaacaaaccatctaaacaagatgcagaggaagtagaagcgtatagagcatcctttgggttcagtgcggatgagatcgttagtacgacacaatatgtggaaatttctgatgtcgcattagatgaatcctttagcatgaccccttttaccaagcccagagaagaggaaatcatattaactatgtcaacagctgagggaacaaaagcagggaatatctctaatatggcatctcctctgcagtgcaaaccagggatgcatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39121" stop="37843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38821" g_stop="38152" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E452313" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38821" e_stop="38152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCTGTGCAAACCAG</genome_strand>
        <mrna_strand>TTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTCGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACCAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAGAGGGAACTTCCTCAATTGGATCCTTCTATCCCTTCATCCGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGTTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAGCCGATGCTTATTCCACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTAGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCGGATGAGATCGTTAGTACGACACAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACCCCTTTTACCAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGCAGGGAATATCTCTAATATGGCATCTCCTCTGCAGTGCAAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340140" ref_strand="+" ref_description="SGN-E340140 [cTOF-2-E9]">
      <seq>ttaaaactaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcgaggggaccaggtgaaagggaacttcctcagttggatccttctatcccttcatccgagatcaagtatccaggccctgattcaagcacctccaagctgactcaagattcaaatttcttctgtccagctacatttgcccaatattacattgaccactctttatttcctcattctggtggaaggctgagcgtttccaaagaaactgatgcttatgcaactaataatgggaatggccagcagagttggcagaacaaaccatctaaacaagatgcagaggaagttgaagcgtatagagcatcctttgggttcagtgctgatgagattgttagtacgacgcaatatgtggaaatttctgatgtcgcattagatgaatcctttagcatgactccttttactaagcccagagaagaggaaatcatattaactatgtcaacagctgagggaacaaaaggagggaatatctctaatatggcatctcctctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39033" stop="37862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38733" g_stop="38162" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E340140" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38733" e_stop="38162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCTG</genome_strand>
        <mrna_strand>TTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCCGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325834" ref_strand="+" ref_description="SGN-E325834 [cTOC-12-F23]">
      <seq>tctcctcccgtgttctctaacttcaccactgagccatctactgctcctttcacacctccgcctgagttggcccacttaactactccctcttcaccagatgtgccttttgctcggttcctctcctcttctgtgaaagttaaaactaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcgaggggaccaggtgaaagggaacttcctcagttggatccttctatcccttcatccgagatcaagtatccaggccctgattcaagcacctccaagctgactcaagattcaaatttcttctgtccagctacatttgcccaatattacattgaccactctttatttcctcattctggtggaaggctgagcgtttccaaagaaactgatgcttatgcaactaataatgggaatggccagcagagttggcagaacaaaccatctaaacaagatgcagaggaagttgaagcgtatagagcatcctttgggttcagtgctgatgagattgttagtacgacgcaatatgtggaaatttctgatgtcgcattagatgaatcctttagcatgactccttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39169" stop="37953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38869" g_stop="38253" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E325834" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38869" e_stop="38253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTAC</genome_strand>
        <mrna_strand>TCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCCGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359479" ref_strand="+" ref_description="SGN-E359479 [cLHT-31-J21]">
      <seq>tctcctcccgtgttctctaacttcaccactgagccatctactgctcctttgacacctccgcctgagttggcccacttaactactccctcttcaccagatgtgccttttgctcggttcctctcctcttctgtgaaagttaaaactaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcgaggggaccaggtgaaagggaacttcctcagttggatccttctatcccttcatccgagatcaagtatccaggccctgattcaagcacctccaagctgactcaagattcaaatttcttctgtccagctacatttgcccaatattacattgaccactctttatttcctcattctggtggaaggctgagcgtttccaaagaaactgatgcttatgcaactaataatgggaatggccagcagagttggcagaacaaaccatctaaacaagatgcagaggaagttgaagcgtatagagcatcctttgggttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39169" stop="38038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38869" g_stop="38338" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E359479" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38869" e_stop="38338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCA</genome_strand>
        <mrna_strand>TCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTGACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCCGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311570" ref_strand="+" ref_description="SGN-E311570 [cTOA-6-G19]">
      <seq>gaattcagcactcccttcaacagctcaatcaccaagctgttttttatctagcaattcaccaggaggtccttcatcagctatgttcgccactggtccatatgctcatgagacccagttggtatctcctcccgtgttctctaacttcaccactgagccatctactgctcctttcacacctccgcctgagttggcccacttaactactccctcttcaccagatgtgccttttgctcggttcctctcctcttctgtgaaagttaaaactaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcgaggggaccaggtgaaagggaacttcctcagttggatccttctatcccttcatccgagatcaagtatccaggccctgattcaagcacctccaagctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39290" stop="38246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38990" g_stop="38546" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E311570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38990" e_stop="38546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACT</genome_strand>
        <mrna_strand>GAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCCGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326044" ref_strand="+" ref_description="SGN-E326044 [cTOC-16-E11]">
      <seq>tggagatgaaagagtaagtgttgaaaagaagaagaaaacaaagatttgtttgtgtttaagcagttgggtgaaagtgtactgaagtgaagttgattaaaaaaggagtttgatttagctgaagtttgacagtagaaatggggtcggagcagaatagatttccgcagcaacaaggaccgccacttccttctcggcataaacgatggggaggatgtttgggaagattgtcttgttttggaagacaaaaaggtggaaagcgtatagtgccttcatctcgtattcctgaggccaattcaatgccaaatcagcagaatgttccccaagctggtgggctgaataatcagacggcagctcttttagctccaccatcttcaccagcatcattttcgaattcagcactcccttcaacagctcaatcaccaagctgttttttatctagcaattcaccaggaggtccttcatcagctatgttcgccactggtccatatgctcatgagacccagttggtatctcctcccgtgttctctaacttcaccactgagccatctactgctcctttcacacctccgcctgagttggcccacttaactactccctcttcaccagatgtgccttttgctcggttcctctcctcttctgtgaaagttaaaactaacactggtgccaatgattttcaaacaacatactctctttatccaggaagtcctgctagtactctcagatcccctgtttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40850" stop="38345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40550" g_stop="40360" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39184" g_stop="38645" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="731" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E326044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40550" e_stop="40360"/>
          <exon e_start="39184" e_stop="38645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGGGTACTGTGCATTTCACTTTTCAGATCTATTAGCTTACTGTGTAATTTTGTATGTGTGGATGAGAATTTTGTGAAATCTGTTATGGGTTTACTTGTTGTAATGTTTTAGTAATTAAATTGTGTGGTGGAATTACATTTGCAAACAGATCTGAGGTTTTGGTGAGATGGGGTTGTGGAGTTTTTGTGATGGAATAACTTTAAATCTACTAAATAGTGGTTGTATGGAGTGATGAATCTAGTTTCCTAATTGATACTATTTAATAATGTTGTTATGCTGCCGTGGCTGTCGTTTACCGGTTGATGAAGTGGGTTGAGAATTGTGAGATCTTGTGTTCAAATCCCACTAGAGATTAAAACAAACATTAGGCGATTTCTTACCGTTTTGTCCTAGCTTTTGTGTATGGAGTTACGTGGTCCCTAGTGCTAGTGAGAGGTGGGGAGTATCCCGTGGAATTAGTTGAAGTTGGGACACAACGGTCATAAAAAAATGATATTGTAGTTAATCTCACTCGTAAGAAAATATAGGAATTTATTTAATGCAGTAATTTTTGAGGGCGGGCCGCGGGGATGATGATCTTATTGAGGCCAAAACAATGTTTTCACTTTGTTTATTTTGAGAAAGGATTCACTAGCAAACCTGCTGGTTGTTGAGTTTGGCTCCACTGTGTGTGGACCATGGTATCTTTTAGATGTGTGAAAATGCAGCTGATACATGAGTCTAGTGCTTGGTGATAGAGACAATGAATAAGCTTTTCATCGTTGACTTAGATGTCGTAAGGGAATATTAAAAGAATAACATTGACTATTAATGTTTTCGCACTTGGTCTAACTTCTGTATATTATGATTTTACTTTCGTGTTATCATATTTCCCGTGTGAACCACTTAGGCAAAGAGGCAGATCAATGAATTTTGATTTGTGGGTTCTGAATTACGATCCTTTTTGCTTGCTGGTTTTTTGATAGCACATTGAATATATTTTTAAATATAAATAAAGTGTTCCACTGTAGTTTAATGGGTTTTGCTGAACCAGTAGCTCTAAGGCTGGCTCCTCCCCTGCTTACATAGGCAAATGCCTTCTGAATTTTACATGAATGCACCTTTTATCCAGCATCTTCCCGTTTTTTTGTTTTTTATGTTGAGTACACCCCAACAGCTAATGCTCTATTCTTTGACAGCATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCG</genome_strand>
        <mrna_strand>TGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329351" ref_strand="+" ref_description="SGN-E329351 [cTOD-2-C5]">
      <seq>agttctactagtatagtactagtagcatcagcagtacatacactcttctccattttattgaccaaaaatgttgaatttgtctgcatctgttgaatgagcaaaaaggattttgttgtttgtgtgtttaacaaccattttttttttgagtatttttgagttttgagtgtgtatgtgtgttttagtgtggagatgaaagagtaagtgttgaaaagaagaagaaaacaaagatttgtttgtgtttaagcagttgggtgaaagtgtactgaagtgaagttgattaaaaaaggagtttgatttagctgaagtttgacagtagaaatggggtcggagcagaatagatttccgcagcaacaaggaccgccacttccttctcggcataaacgatggggaggatgtttgggaagattgtcttgttttggaagacaaaaaggtggaaagcgtatagtgccttcatctcgtattcctgaggccaattcaatgccaaatcagcagaatgttccccaagctggtgggctgaataatcagacggcagctcttttagctccaccatcttcaccagcatcattttcgaattcagcactcccttcaacagctcaatcaccaagctgttttttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="41034" stop="38642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40734" g_stop="40360" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39184" g_stop="38942" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="618" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E329351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40734" e_stop="40360"/>
          <exon e_start="39184" e_stop="38942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGGGTACTGTGCATTTCACTTTTCAGATCTATTAGCTTACTGTGTAATTTTGTATGTGTGGATGAGAATTTTGTGAAATCTGTTATGGGTTTACTTGTTGTAATGTTTTAGTAATTAAATTGTGTGGTGGAATTACATTTGCAAACAGATCTGAGGTTTTGGTGAGATGGGGTTGTGGAGTTTTTGTGATGGAATAACTTTAAATCTACTAAATAGTGGTTGTATGGAGTGATGAATCTAGTTTCCTAATTGATACTATTTAATAATGTTGTTATGCTGCCGTGGCTGTCGTTTACCGGTTGATGAAGTGGGTTGAGAATTGTGAGATCTTGTGTTCAAATCCCACTAGAGATTAAAACAAACATTAGGCGATTTCTTACCGTTTTGTCCTAGCTTTTGTGTATGGAGTTACGTGGTCCCTAGTGCTAGTGAGAGGTGGGGAGTATCCCGTGGAATTAGTTGAAGTTGGGACACAACGGTCATAAAAAAATGATATTGTAGTTAATCTCACTCGTAAGAAAATATAGGAATTTATTTAATGCAGTAATTTTTGAGGGCGGGCCGCGGGGATGATGATCTTATTGAGGCCAAAACAATGTTTTCACTTTGTTTATTTTGAGAAAGGATTCACTAGCAAACCTGCTGGTTGTTGAGTTTGGCTCCACTGTGTGTGGACCATGGTATCTTTTAGATGTGTGAAAATGCAGCTGATACATGAGTCTAGTGCTTGGTGATAGAGACAATGAATAAGCTTTTCATCGTTGACTTAGATGTCGTAAGGGAATATTAAAAGAATAACATTGACTATTAATGTTTTCGCACTTGGTCTAACTTCTGTATATTATGATTTTACTTTCGTGTTATCATATTTCCCGTGTGAACCACTTAGGCAAAGAGGCAGATCAATGAATTTTGATTTGTGGGTTCTGAATTACGATCCTTTTTGCTTGCTGGTTTTTTGATAGCACATTGAATATATTTTTAAATATAAATAAAGTGTTCCACTGTAGTTTAATGGGTTTTGCTGAACCAGTAGCTCTAAGGCTGGCTCCTCCCCTGCTTACATAGGCAAATGCCTTCTGAATTTTACATGAATGCACCTTTTATCCAGCATCTTCCCGTTTTTTTGTTTTTTATGTTGAGTACACCCCAACAGCTAATGCTCTATTCTTTGACAGCATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCT</genome_strand>
        <mrna_strand>AGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305746" ref_strand="+" ref_description="SGN-E305746 [cLEX-14-E2]">
      <seq>tagagagaagcaaaaaaaagaaatagtatcagttctactagtatagtactagtagcatcagcagtacatacactcttctccattttattgaccaaaaatgttgaatttgtctgcatctgttgaatgagcaaaaaggattttgttgtttgtgtgtttaacaaccattttttttttgagtatttttgagttttgagtgtgtatgtgtgttttagtgtggagatgaaagagtaagtgttgaaaagaagaagaaaacaaagatttgtttgtgtttaagcagttgggtgaaagtgtactgaagtgaagttgattaaaaaaggagtttgatttagctgaagtttgacagtagaaatggggtcggagcagaatagatttccgcagcaacaaggaccgccacttccttctcggcataaacgatggggaggatgtttgggaagattgtcttgttttggaagacaaaaaggtggaaagcgtatagtgccttcatctcgtattcctgaggccaattcaatgccaaatcagcagaatgttccccaagctggtgggctgaataatcagacggcagctcttttagctccaccatcttcaccagcatcattttcgaattcagcactcccttcaacagctcaatcaccaagctgttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="41064" stop="38644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40764" g_stop="40360" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39184" g_stop="38944" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="646" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E305746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40764" e_stop="40360"/>
          <exon e_start="39184" e_stop="38944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGGGTACTGTGCATTTCACTTTTCAGATCTATTAGCTTACTGTGTAATTTTGTATGTGTGGATGAGAATTTTGTGAAATCTGTTATGGGTTTACTTGTTGTAATGTTTTAGTAATTAAATTGTGTGGTGGAATTACATTTGCAAACAGATCTGAGGTTTTGGTGAGATGGGGTTGTGGAGTTTTTGTGATGGAATAACTTTAAATCTACTAAATAGTGGTTGTATGGAGTGATGAATCTAGTTTCCTAATTGATACTATTTAATAATGTTGTTATGCTGCCGTGGCTGTCGTTTACCGGTTGATGAAGTGGGTTGAGAATTGTGAGATCTTGTGTTCAAATCCCACTAGAGATTAAAACAAACATTAGGCGATTTCTTACCGTTTTGTCCTAGCTTTTGTGTATGGAGTTACGTGGTCCCTAGTGCTAGTGAGAGGTGGGGAGTATCCCGTGGAATTAGTTGAAGTTGGGACACAACGGTCATAAAAAAATGATATTGTAGTTAATCTCACTCGTAAGAAAATATAGGAATTTATTTAATGCAGTAATTTTTGAGGGCGGGCCGCGGGGATGATGATCTTATTGAGGCCAAAACAATGTTTTCACTTTGTTTATTTTGAGAAAGGATTCACTAGCAAACCTGCTGGTTGTTGAGTTTGGCTCCACTGTGTGTGGACCATGGTATCTTTTAGATGTGTGAAAATGCAGCTGATACATGAGTCTAGTGCTTGGTGATAGAGACAATGAATAAGCTTTTCATCGTTGACTTAGATGTCGTAAGGGAATATTAAAAGAATAACATTGACTATTAATGTTTTCGCACTTGGTCTAACTTCTGTATATTATGATTTTACTTTCGTGTTATCATATTTCCCGTGTGAACCACTTAGGCAAAGAGGCAGATCAATGAATTTTGATTTGTGGGTTCTGAATTACGATCCTTTTTGCTTGCTGGTTTTTTGATAGCACATTGAATATATTTTTAAATATAAATAAAGTGTTCCACTGTAGTTTAATGGGTTTTGCTGAACCAGTAGCTCTAAGGCTGGCTCCTCCCCTGCTTACATAGGCAAATGCCTTCTGAATTTTACATGAATGCACCTTTTATCCAGCATCTTCCCGTTTTTTTGTTTTTTATGTTGAGTACACCCCAACAGCTAATGCTCTATTCTTTGACAGCATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTAT</genome_strand>
        <mrna_strand>TAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202604" ref_strand="+" ref_description="SGN-E202604 [cLEC-19-N15]">
      <seq>gaagcaaaaaaaagaaatagtatcagttctactagtgtggtactagtagcatcagcaggacatacactcttctccattttattgaccaaaaatgttgaatttgtctgcatctgttgaatgagcaaaaaggattttgttgtttgtgtgtttaacaaccattttttttttgagtatttttgagttttgagtgtgtatgtgtgttttagtgtggagatgaaagagtaagtgttgaaaagaagaagaaaacaaagatttgtttgtgtttaagcagttgggtgaaagtgtactgaagtgaagttgattaaaaaaggagtttgatttatctgaagtttgacagtagaaatggggtcggagcacaatagatttccgcagcaacaaggaccgccacttccttctcggcataaacgatggggaggatgtttgggaagattgtcttgttttggaagacaaaaaggtggaaagcgtatagtgccttcatctcgtattcctgaggccaattcaatgccaaatcagcagaatgttccccaagctggtgggctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="41058" stop="38740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40758" g_stop="40360" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39184" g_stop="39040" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="544" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E202604" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40758" e_stop="40360"/>
          <exon e_start="39184" e_stop="39040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGGGTACTGTGCATTTCACTTTTCAGATCTATTAGCTTACTGTGTAATTTTGTATGTGTGGATGAGAATTTTGTGAAATCTGTTATGGGTTTACTTGTTGTAATGTTTTAGTAATTAAATTGTGTGGTGGAATTACATTTGCAAACAGATCTGAGGTTTTGGTGAGATGGGGTTGTGGAGTTTTTGTGATGGAATAACTTTAAATCTACTAAATAGTGGTTGTATGGAGTGATGAATCTAGTTTCCTAATTGATACTATTTAATAATGTTGTTATGCTGCCGTGGCTGTCGTTTACCGGTTGATGAAGTGGGTTGAGAATTGTGAGATCTTGTGTTCAAATCCCACTAGAGATTAAAACAAACATTAGGCGATTTCTTACCGTTTTGTCCTAGCTTTTGTGTATGGAGTTACGTGGTCCCTAGTGCTAGTGAGAGGTGGGGAGTATCCCGTGGAATTAGTTGAAGTTGGGACACAACGGTCATAAAAAAATGATATTGTAGTTAATCTCACTCGTAAGAAAATATAGGAATTTATTTAATGCAGTAATTTTTGAGGGCGGGCCGCGGGGATGATGATCTTATTGAGGCCAAAACAATGTTTTCACTTTGTTTATTTTGAGAAAGGATTCACTAGCAAACCTGCTGGTTGTTGAGTTTGGCTCCACTGTGTGTGGACCATGGTATCTTTTAGATGTGTGAAAATGCAGCTGATACATGAGTCTAGTGCTTGGTGATAGAGACAATGAATAAGCTTTTCATCGTTGACTTAGATGTCGTAAGGGAATATTAAAAGAATAACATTGACTATTAATGTTTTCGCACTTGGTCTAACTTCTGTATATTATGATTTTACTTTCGTGTTATCATATTTCCCGTGTGAACCACTTAGGCAAAGAGGCAGATCAATGAATTTTGATTTGTGGGTTCTGAATTACGATCCTTTTTGCTTGCTGGTTTTTTGATAGCACATTGAATATATTTTTAAATATAAATAAAGTGTTCCACTGTAGTTTAATGGGTTTTGCTGAACCAGTAGCTCTAAGGCTGGCTCCTCCCCTGCTTACATAGGCAAATGCCTTCTGAATTTTACATGAATGCACCTTTTATCCAGCATCTTCCCGTTTTTTTGTTTTTTATGTTGAGTACACCCCAACAGCTAATGCTCTATTCTTTGACAGCATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATA</genome_strand>
        <mrna_strand>GAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTGTGGTACTAGTAGCATCAGCAGGACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTATCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCACAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328562" ref_strand="+" ref_description="SGN-E328562 [cTOC-23-O22]">
      <seq>tttgagtctctgtgtctcttcctgtagagagaagcaaaaattagaaatagtatcagttctactagtatagtactagtagcatcagcagtacatacactcttctccattttattgaccaaaaatgttgaatttgtctgcatctgttgaatgagcaaaaaggattttgttgtttgtgtgtttaacaaccattttttttttgagtatttttgagttttgagtgtgtatgtgtgttttagtgtggagatgaaagagtaagtgttgaaaagaagaagaaaacaaagatttgtttgtgtttaagcagttgggtgaaagtgtactgaagtgaagttgattaaaaaaggagtttgatttaactgaagtttgacagtaaaaatggggtcggagcagaatagatttccgcagcaacaaggaccgccacttccttctcggcataaaccatggggaggatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="41088" stop="38861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40788" g_stop="40360" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39184" g_stop="39161" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="453" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E328562" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40788" e_stop="40360"/>
          <exon e_start="39184" e_stop="39161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTCTCTGTGTCTCTTCCTGTAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGGGTACTGTGCATTTCACTTTTCAGATCTATTAGCTTACTGTGTAATTTTGTATGTGTGGATGAGAATTTTGTGAAATCTGTTATGGGTTTACTTGTTGTAATGTTTTAGTAATTAAATTGTGTGGTGGAATTACATTTGCAAACAGATCTGAGGTTTTGGTGAGATGGGGTTGTGGAGTTTTTGTGATGGAATAACTTTAAATCTACTAAATAGTGGTTGTATGGAGTGATGAATCTAGTTTCCTAATTGATACTATTTAATAATGTTGTTATGCTGCCGTGGCTGTCGTTTACCGGTTGATGAAGTGGGTTGAGAATTGTGAGATCTTGTGTTCAAATCCCACTAGAGATTAAAACAAACATTAGGCGATTTCTTACCGTTTTGTCCTAGCTTTTGTGTATGGAGTTACGTGGTCCCTAGTGCTAGTGAGAGGTGGGGAGTATCCCGTGGAATTAGTTGAAGTTGGGACACAACGGTCATAAAAAAATGATATTGTAGTTAATCTCACTCGTAAGAAAATATAGGAATTTATTTAATGCAGTAATTTTTGAGGGCGGGCCGCGGGGATGATGATCTTATTGAGGCCAAAACAATGTTTTCACTTTGTTTATTTTGAGAAAGGATTCACTAGCAAACCTGCTGGTTGTTGAGTTTGGCTCCACTGTGTGTGGACCATGGTATCTTTTAGATGTGTGAAAATGCAGCTGATACATGAGTCTAGTGCTTGGTGATAGAGACAATGAATAAGCTTTTCATCGTTGACTTAGATGTCGTAAGGGAATATTAAAAGAATAACATTGACTATTAATGTTTTCGCACTTGGTCTAACTTCTGTATATTATGATTTTACTTTCGTGTTATCATATTTCCCGTGTGAACCACTTAGGCAAAGAGGCAGATCAATGAATTTTGATTTGTGGGTTCTGAATTACGATCCTTTTTGCTTGCTGGTTTTTTGATAGCACATTGAATATATTTTTAAATATAAATAAAGTGTTCCACTGTAGTTTAATGGGTTTTGCTGAACCAGTAGCTCTAAGGCTGGCTCCTCCCCTGCTTACATAGGCAAATGCCTTCTGAATTTTACATGAATGCACCTTTTATCCAGCATCTTCCCGTTTTTTTGTTTTTTATGTTGAGTACACCCCAACAGCTAATGCTCTATTCTTTGACAGCATAAACGATGGGGAGGATGTTTG</genome_strand>
        <mrna_strand>TTTGAGTCTCTGTGTCTCTTCCTGTAGAGAGAAGCAAAAATTAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAACTGAAGTTTGACAGTAAAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAACCATGGGGAGGATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606649" ref_strand="+" ref_description="SGN-E606649 [22596]">
      <seq>caattgcgggcatggtgatctatagttgggccgtggagatcgaaaaacaatccaacaccaagagcccacacgcttccaaaaacagcttgacagaagaagagctgagattattgaaggagggaatggagaaggcggacgtcgaagtcggtcagtccaaggcccaaattttgaggtctcttatttagtagccatcatcacacaatagtttatgatcaaatttgcatgtagtttatgatatttgttgcattatttattggacatcccttccatttggtcccaatttggtgaccttgtcttgcttttttttaatagttactgaatgttttgttctttatccaagtctaccactaccaggtttcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="44851" stop="43921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44551" g_stop="44166" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E606649" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44551" e_stop="44166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACAT-CCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAAGTCTACCACTACCAGGGTTCTTTTATACCATTTT</genome_strand>
        <mrna_strand>CAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGATCGAAAAACAATCCAACACCAAGAGCCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAGATTATTGAAGGAGGGAATGGAGAAGGCGGACGTCGAAGTCGGTCAGTCCAAGGCC-CAAA-TTTTGAGGTCTCTTATTTAGTAGCCATCATCACACA--ATAG--T-TTAT-GATCAAATTTGCATGTAGTTTATGATATTTGTTGCATTATTTATTGGACATCCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTG---CTTTT--TT-TTAATAGTTACTGAATGTTTTGTTCTTTATCCAAGTCTACCACTACCAGGTTTCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577348" ref_strand="-" ref_description="SGN-E577348 [34933]">
      <seq>gtactcagttggattcgttttgaattattgagtaaaactgctccgatacaagcttgctccctccttgtgctgggtcctttttgcgactactatcttagtggaaatctattactagactacaagtatacttatggtgccattttctttatactcctgtcgtgttcattagctgtgttctgcaatgtgagtcagtatctctgcatcgggcgattctctgcagtttccttccaggttctaggccacatgaagaccgtgtgtgtcctgactttgggctggttgctctttgaatctgcgttgacttttaagaacataatgggaatgctcgttgcaattgcgggcatggtgatctatagttgggccgtggagatcgaaaaacaatccaacaccaagagcccacacgcttccaaaaacagcttgacagaagaagagctgagattattgaaggagggaatggagaaggcggacgtcgaagtcggtcagtccaaggcctaaattttgaggtctcttatttagtaaccatcatcacacaatagtttatgatcaaatttgcatgtagtttatgatatttgttgcattatttattggacatcccttccatttggtcccaatttggtgaccttgtcttgcttttttttaatagttactgaatgttttgttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="45277" stop="43921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44993" g_stop="44855" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116">
            <donor d_prob="0.582" d_score="0.98"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44738" g_stop="44198" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="669" r_length="528" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E577348" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577348" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44993" e_stop="44855"/>
          <exon e_start="44738" e_stop="44198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTCAATTGGA-TCC-TTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATTGTAAGTATCAACCAATCTTCTTATTCCCAGATTATGATGCATATTTGATTGGTCCTTTTACGGCCTACACAACTTTATGCAATCTGATCCATGGATGTGTGTGGCACTTTCTGCAGTTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACAT-CCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAAGT</genome_strand>
        <mrna_strand>GTACTCAGTTGGATTCGTTTTGAATTATTGAGTAAAACTGCTCCGATACAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATACTTATGGTGCCATT....................................................................................................................TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTGGGCTGGTTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGATCGAAAAACAATCCAACACCAAGAGCCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAGATTATTGAAGGAGGGAATGGAGAAGGCGGACGTCGAAGTCGGTCAGTCCAAGGCCT-AAA-TTTTGAGGTCTCTTATTTAGTAACCATCATCACACA--ATAG--T-TTAT-GATCAAATTTGCATGTAGTTTATGATATTTGTTGCATTATTTATTGGACATCCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTG---CTTTT--TT-TTAATAGTTACTGAATGTTTTGTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711528" ref_strand="+" ref_description="SGN-E711528 [FB02BA06]">
      <seq>ctttatcggcgtgggtgtttgcacagtaactgatgtcaagcctaacgccaaaggttttatttgtgcttgtgttgcagttctgtcaacatcattgcaacagatttcaataggctctttgcagaaaaagtactcaattggatcctttgaattattgagtaaaactgctccgattcaagcttgctccctccttgtgctgggtcctttttgcgactactatcttagtggaaatctattactagactacaagtattcttatggtgccattttctttatactcctgtcgtgttcattagctgtgttctgcaatgtgagtcagtatctctgcatcgggcgattctctgcagtttccttccaggttctaggccacatgaagaccgtgtgtgtcctgactttaggctgggtgctctttgaatctgcgttgacttttaagaacataatgggaatgctcgttgcaattgcgggcatggtgatctatagttgggccgtggaggtcgaaaaacaaaccaacaccaagagtccacacgcttccaaaaacagcttgacagaagaagagctgaaattattgaaggagggaatggagaaggccgacgtcgaagtcggtcagtccaaggcctgaaatttttgaggtctcttatttagtagccatcatcacatattatagcttcttttggatcaaatttgcatgtagtttattatttttgttgcattatttattggacatccttccatttggtcccaatttggtgaccttgtcttgttttttttccttcttaatagttactgaatgttttgttctttgtccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="46240" stop="43900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45940" g_stop="45838" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45837" i_stop="45017" i_length="821">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45016" g_stop="44855" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="265" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44738" g_stop="44200" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="804" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="805" polyA_stop="816"/>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E711528" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45940" e_stop="45838"/>
          <exon e_start="45016" e_stop="44855"/>
          <exon e_start="44738" e_stop="44200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATTGTGAGTATACTCTGGCTTCTTCGGAACTTACTGCAAAAAGACTGAATGATTGAAAAGATTTCCAGAAGAGAAATATTTGATTTTGTTCTGATTTAAGATCACTATCATTTAAAGTTAAACAATTTCCTAGACGTTTGATAATTTCTCCTCTGACCATGATAAAAGATCGCATTGAAGCGGCTAATCCAATGCATACATAAATTCTTTAGAATGTTAGGTGTCTTCTGTAATTTGACTCTACTATTTATGTGGGTTTAATTTATGATTACAAACTTAGTTTTCCTTTCTGAGAGGCAGTTTATTTAGGGAGCCTGCTCCTTAATAAAGATCCTTTCTTTCCATTAGAAGCTAAAGGATAGACATCTGTGATTTTTCCCTTTTTCCGTCCTCCCTTTTCTCCCATAGAAGTGATGAAAGTTTGCCTTCCTTTTGTTTCATACTAGTGTCGAGAAGAAGTAACTACTCTATCAGACCTTTTTATCCTTGACAAGGATCGTTTCTCGCTCTAAAAAGCTAAAGAAAAGAATTCTCCAAATTTTCATATTCTCTCTCTGCTTTTACCCTTTTTAAAAAGCTTTACAACAAGAAATAGGCCTCAGTCTCAAACAAGGTGCTACATTTGTTGTGTTGCTTTTAATAACCTGCTAGCCTCATTCATACAATACATTTTGTCATCAAGCTCTCGCATTCTTCTACCAAATCAAATCCTTGCTTCATTCTTGACCCCCCCCCCCCTCCCCTGCCCCCTCGAGTCATTCTCTCTTTGTTCTCTTAAACTTGTGGTTGCATTTGTGTGATCAAACGATGATTTCTCGGTGCAGTCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATTGTAAGTATCAACCAATCTTCTTATTCCCAGATTATGATGCATATTTGATTGGTCCTTTTACGGCCTACACAACTTTATGCAATCTGATCCATGGATGTGTGTGGCACTTTCTGCAGTTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACATCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAA</genome_strand>
        <mrna_strand>CTTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGCCTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATT....................................................................................................................TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACATCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372701" ref_strand="+" ref_description="SGN-E372701 [TUS-31-M21](-)">
      <seq>acgccaaaggttttatttgtgcttgtgtggcagttctgtcaacatcattgcaacagatttcaataggctcttggcaaaaaaagtactcaattggatcctttgaattattgagtaaaactgctccgattcaagcttgctccctccttgtgctgggtcctttttgcgactactatcttagtggaaatctattactagactacaagtattcttatggtgccattttctttatactcctgtcgtgttcattagctgtgttctacaatgtgagtcagtatctctgcatcgggcgattctctgcagtttccttccaggttctaggccacatgaagaccgtgtgtgtcctgactttaggctgggtgctctttgaatctgcgttgacttttaagaacataatgggaatgctcgttgcaattgcgggcatggtgatctatagttgggccgtggaggtcgaaaaacaaaccaacaccaagagtccacacgcttccaaaaacagcttgacaaaagaaaagctgaaattattgaaggagggaatggagaaggccgaagtataagtcggtcagtccaaggcatgaaatttttgaggtctcttatttagtagccatcatcacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="46196" stop="44047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45896" g_stop="45838" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45837" i_stop="45017" i_length="821">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.505" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45016" g_stop="44855" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="221" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44738" g_stop="44347" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="613" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E372701" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45896" e_stop="45838"/>
          <exon e_start="45016" e_stop="44855"/>
          <exon e_start="44738" e_stop="44347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATTGTGAGTATACTCTGGCTTCTTCGGAACTTACTGCAAAAAGACTGAATGATTGAAAAGATTTCCAGAAGAGAAATATTTGATTTTGTTCTGATTTAAGATCACTATCATTTAAAGTTAAACAATTTCCTAGACGTTTGATAATTTCTCCTCTGACCATGATAAAAGATCGCATTGAAGCGGCTAATCCAATGCATACATAAATTCTTTAGAATGTTAGGTGTCTTCTGTAATTTGACTCTACTATTTATGTGGGTTTAATTTATGATTACAAACTTAGTTTTCCTTTCTGAGAGGCAGTTTATTTAGGGAGCCTGCTCCTTAATAAAGATCCTTTCTTTCCATTAGAAGCTAAAGGATAGACATCTGTGATTTTTCCCTTTTTCCGTCCTCCCTTTTCTCCCATAGAAGTGATGAAAGTTTGCCTTCCTTTTGTTTCATACTAGTGTCGAGAAGAAGTAACTACTCTATCAGACCTTTTTATCCTTGACAAGGATCGTTTCTCGCTCTAAAAAGCTAAAGAAAAGAATTCTCCAAATTTTCATATTCTCTCTCTGCTTTTACCCTTTTTAAAAAGCTTTACAACAAGAAATAGGCCTCAGTCTCAAACAAGGTGCTACATTTGTTGTGTTGCTTTTAATAACCTGCTAGCCTCATTCATACAATACATTTTGTCATCAAGCTCTCGCATTCTTCTACCAAATCAAATCCTTGCTTCATTCTTGACCCCCCCCCCCCTCCCCTGCCCCCTCGAGTCATTCTCTCTTTGTTCTCTTAAACTTGTGGTTGCATTTGTGTGATCAAACGATGATTTCTCGGTGCAGTCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATTGTAAGTATCAACCAATCTTCTTATTCCCAGATTATGATGCATATTTGATTGGTCCTTTTACGGCCTACACAACTTTATGCAATCTGATCCATGGATGTGTGTGGCACTTTCTGCAGTTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATT</genome_strand>
        <mrna_strand>ACGCCAAAGGTTTTATTTGTGCTTGTGTGGCAGTTCTGTCAACATCATTGCAACAGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGGCTCTTGGCAAAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATT....................................................................................................................TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTACAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAAAAGAAAAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGAAGTATAAGTCGGTCAGTCCAAGGCATGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580972" ref_strand="+" ref_description="SGN-E580972 [6215]">
      <seq>ttttgcgactactatcttagtggaaatctattactaactacaagtataacttatggtgccgttggctttatactcctgtcgtgttcattagctgtgttctgcaatgtgagtcagtatctctgcatcgggcgattctctgcagtttccttccaggttctaggccacatgaagaccgtgtgtgtcctgactttgggctggttgctctttgaatctgcgttgacttttaagaacataatgggaatgctcgttgcaattgcgggcatggtgatctatagttgggccgtggagatcgaaaaacaatcccacaccaagagcccacacgcttccaaaaacagcttgacagaagaagagctgaattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="45217" stop="44138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44917" g_stop="44855" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116">
            <donor d_prob="0.582" d_score="0.90"/>
            <acceptor a_prob="0.335" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44738" g_stop="44438" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="363" r_length="300" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E580972" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44917" e_stop="44855"/>
          <exon e_start="44738" e_stop="44438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTAT-TCTTATGGTGCCATTGTAAGTATCAACCAATCTTCTTATTCCCAGATTATGATGCATATTTGATTGGTCCTTTTACGGCCTACACAACTTTATGCAATCTGATCCATGGATGTGTGTGGCACTTTCTGCAGTTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGA</genome_strand>
        <mrna_strand>TTTTGCGACTACTATCTTAGTGGAAATCTATTACTA-ACTACAAGTATAACTTATGGTGCCGTT....................................................................................................................GGCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTGGGCTGGTTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGATCGAAAAACAATCCCACACCAAGAGCCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTG-AATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707260" ref_strand="+" ref_description="SGN-E707260 [FA32CA06]">
      <seq>ccttttatctcatgctcaattcagtcggattttaccaaatctccaagttgagcatgattccagtggtttgcattatggaatgggtccttcataataaacgttactcgaaggaggttaaaatgtctgttgtggttgtcgttatcggcgtgggtgtttgcacagtaactgatgtcaaggttaacgccaaaggttttatttgtgcttgtgttgcagttctgtcaacatcattgcaacagatttcaataggctctttgcagaaaaagtactcaattggatcctttgaattattgagtaaaactgctccgattcaagcttgctccctccttgtgctgggtcctttttgcgactactatcttagtggaaatctattactagactacaagtattcttatggtgccattttctttatactcctgtcgtgttcattagctgtgttctgcaatgtgagtcagtatctctgcatcgggcgattctctgcagtttccttccaggttctaggccacatgaagaccgtgtgtgtcctgactttacgctgggtgctctttgaatctgcgttgacttttaagaacataatgggaatgctcgttgcaattgcgggcatggtgatctatagttgggccgtggaggtcgaaaaacaaaccaacaccaagagtccacacgcttccaaaaacagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="46962" stop="44162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46664" g_stop="46627" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46626" i_stop="46039" i_length="588">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46038" g_stop="45838" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="239" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45837" i_stop="45017" i_length="821">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45016" g_stop="44855" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="401" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44738" g_stop="44462" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="678" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E707260" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46664" e_stop="46627"/>
          <exon e_start="46038" e_stop="45838"/>
          <exon e_start="45016" e_stop="44855"/>
          <exon e_start="44738" e_stop="44462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAAGTATGATAATCTCTCTTTTGTTTTATAGCTGTAACGTTTCTTGTTATGTCTTGTATTTTGTTCTCTTGAAAAAGATAAGTCTTGAATTTTGGCTATGTCTATCAGAGGGTGAAGAATATTTGCTAACAACGTGATTATGCTATCAGCTTTCAGTCCTTTCTCATAAAATGATTTCATCTTTTGTTGTTTGCGTTCGTGATCTATTGACAATGAGTTAACTTATACTGATCAGTATCTTCATTATCTGAAATGACAAAACATGGTTTGGGTTCAATTCGAAAGGGAAAGGAAGGATAGAAAATTGAAAAAATGAGAATAGAATACCAGTCAGGGTGTTCCATTTTCTTTCTTTGATTGATCTAAAAGGATAATTGCAGGTAAGGAATTGATCTTCCCTCTTCCTCCTTCATTGCAAATCAGTTAGTAGAATGGAAACCAATAGTAAAAAGAAAAGTTGTTTCCTTTCATTTACATATTAGCTCAATGTATTATATCGTATACTAGCAGTGCCATTTGTTTTATTTTTTGTTCCTTGGTGAAATTTCATTTTATATGGCTAAAGTTCTTTTTTTTTTGGTTGGGGTGTAGATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTGTGGTTGTCGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATTGTGAGTATACTCTGGCTTCTTCGGAACTTACTGCAAAAAGACTGAATGATTGAAAAGATTTCCAGAAGAGAAATATTTGATTTTGTTCTGATTTAAGATCACTATCATTTAAAGTTAAACAATTTCCTAGACGTTTGATAATTTCTCCTCTGACCATGATAAAAGATCGCATTGAAGCGGCTAATCCAATGCATACATAAATTCTTTAGAATGTTAGGTGTCTTCTGTAATTTGACTCTACTATTTATGTGGGTTTAATTTATGATTACAAACTTAGTTTTCCTTTCTGAGAGGCAGTTTATTTAGGGAGCCTGCTCCTTAATAAAGATCCTTTCTTTCCATTAGAAGCTAAAGGATAGACATCTGTGATTTTTCCCTTTTTCCGTCCTCCCTTTTCTCCCATAGAAGTGATGAAAGTTTGCCTTCCTTTTGTTTCATACTAGTGTCGAGAAGAAGTAACTACTCTATCAGACCTTTTTATCCTTGACAAGGATCGTTTCTCGCTCTAAAAAGCTAAAGAAAAGAATTCTCCAAATTTTCATATTCTCTCTCTGCTTTTACCCTTTTTAAAAAGCTTTACAACAAGAAATAGGCCTCAGTCTCAAACAAGGTGCTACATTTGTTGTGTTGCTTTTAATAACCTGCTAGCCTCATTCATACAATACATTTTGTCATCAAGCTCTCGCATTCTTCTACCAAATCAAATCCTTGCTTCATTCTTGACCCCCCCCCCCCTCCCCTGCCCCCTCGAGTCATTCTCTCTTTGTTCTCTTAAACTTGTGGTTGCATTTGTGTGATCAAACGATGATTTCTCGGTGCAGTCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATTGTAAGTATCAACCAATCTTCTTATTCCCAGATTATGATGCATATTTGATTGGTCCTTTTACGGCCTACACAACTTTATGCAATCTGATCCATGGATGTGTGTGGCACTTTCTGCAGTTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGA</genome_strand>
        <mrna_strand>CCTTTTATCTCATGCTCAATTCAGTCGGATTTTACCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTGTGGTTGTCGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATT....................................................................................................................TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTACGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604725" ref_strand="+" ref_description="SGN-E604725 [74863]">
      <seq>cctctcacacgcaaagtagaaaacacacatcccacatgctactttctctctctacaaaataaagcaaagtgatatgcttttagtagtatcacaaaaatataaatctgaatctactcaattgtgcttattgttattgtagatctacatattgtgttgatatttgtgttatatattgtttttatttgaaaaaaaaatcctgcccctctctgttaaacgagttgggtaggtgatttggtttgatctttggattattaataattgttgttatagtatagttgttattgtaagtatggagagcgagaagaaatcgtctcatgtatcggatatgggagcatgggcgatgaatgttgttagttcggtgggaattattatggctaataagcagcttatgtcggccaatggttattcattcacttttgctacaacattgactgggttccactttgctgtgacggcacttgttgggatggtgtcaaatgccacggggctttcctcatcaaagcatgtacctttgtgggaacttatctggttctcaattgttgcaaacatgtctatcacagggatgaacttaagtctcatgctcaattcagttggattttaccaaatctcaaagttgagcatgattccagtggtttgcattatggaatggatccttcataataagcgttactcgaaggaggttacaatgtctgttgctggttgctcgttatcgcgtgtgggcgtttgcacagtaactgatgtcaaggttaacgctaaaggtttcatttgtgcttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="48551" stop="45569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48210" g_stop="47810" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="419" r_length="392" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47809" i_stop="46812" i_length="998">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46811" g_stop="46627" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="604" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46626" i_stop="46039" i_length="588">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46038" g_stop="45869" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="777" r_length="173" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E604725" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48210" e_stop="47810"/>
          <exon e_start="46811" e_stop="46627"/>
          <exon e_start="46038" e_stop="45869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTG--TTTAAGAAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTGGTAAATCTCATTAACTTTTTGCCGGTGTTATATATAGATCTTGTGAGAATTTTTTGTTTATTTATACGTAGTATGTATTTTATTATTTTTCGTGGCGGATCCAGGATTTGGAGGTTGCGGGTGCAGGGATGAATATAAAATGTTGTAATTTGTCTGTATTCTGGTTGATTTTTGTATTAATTTAGCTTGTTTTTTGTTCATAAATGTGCAATTTGATCTGAATTTTGAATTTTTGTTTCGTAATATGTTTTAATTATGAATGGAGAAGAAGGAGAAGAATTGTTTTTTTTGGCTAGATGGATAATGGATGTAGAGTATCATGTTTACAGTTCATAATGAGCTTAATGAAGCATATATTCAATTCTCAGACCATAGAAGCATATGTTAACTATAAACCTCGAATTTATTACTAAAATGAGAAAAAAAAAGATGTTTGATATTGTGTGTGGGTGTGGGGGGGGGGGGGGTGATATTTGAAAAACAAGATATCGACTATAGTACCTATTAAATTGAGATCAACTCTTTGATTCGCCTTTGCTAACCCGTGTTCTTAAGATTTGAAATATTGTTTGCATGGTTATATACAGTTGTAATCAGATTTGCCATTTCCACTGCCTTAAAAGTATTGGTTTCGTAGAAGAAGACGTTGGCTTGAAATTAATCCCATTGTGACTAACGGATTCCTTTACAATATTGAGCTAGTGTATCTCAATACATTCCTCTGGTTGCTTTGTTTCGTCATTTTGAACTAGCTTGTCTAGGTCTAGATACATTGTGCTATTTTGACTACAAAGATTTTTAAGGTTTGTATTTGAACTGAAAATAAACTCCTTCTGGCTTAGTGGTGGAACCTGACGTTTTCGGCTTTCCTTCTTCCACTTCTTGAGGTTTAGAAGTTTGTTGTTCCTATTACATTCCAATTCCCCTCTTCTGTATGTATGCTTTTAAATTTGGATGGTCCATCTGTCAATTTTAATGTCATGGTTTGTTTCCTCCAGCTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAAGTATGATAATCTCTCTTTTGTTTTATAGCTGTAACGTTTCTTGTTATGTCTTGTATTTTGTTCTCTTGAAAAAGATAAGTCTTGAATTTTGGCTATGTCTATCAGAGGGTGAAGAATATTTGCTAACAACGTGATTATGCTATCAGCTTTCAGTCCTTTCTCATAAAATGATTTCATCTTTTGTTGTTTGCGTTCGTGATCTATTGACAATGAGTTAACTTATACTGATCAGTATCTTCATTATCTGAAATGACAAAACATGGTTTGGGTTCAATTCGAAAGGGAAAGGAAGGATAGAAAATTGAAAAAATGAGAATAGAATACCAGTCAGGGTGTTCCATTTTCTTTCTTTGATTGATCTAAAAGGATAATTGCAGGTAAGGAATTGATCTTCCCTCTTCCTCCTTCATTGCAAATCAGTTAGTAGAATGGAAACCAATAGTAAAAAGAAAAGTTGTTTCCTTTCATTTACATATTAGCTCAATGTATTATATCGTATACTAGCAGTGCCATTTGTTTTATTTTTTGTTCCTTGGTGAAATTTCATTTTATATGGCTAAAGTTCTTTTTTTTTTGGTTGGGGTGTAGATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTG-TGGTTG-TCGTTATCG-GCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGT</genome_strand>
        <mrna_strand>CA-TCCCACATGCTACTTTCTCTCTCTACAAAATAAAGCAAAGTGATATGCTTTT-AGTAGTATCACAAAAATATAAATCTGAATCTACTCAATTGTGCTTATT-GTTATTGTAGATCTAC-ATATTGTGTTGATATTTGTGTTATATATTGTTTTTATTTGAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGG-TTTGAT-CTTTGGATTATTAATAATTGTTG-T-T-ATA-GTATAGTTGTTATTG-TAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATTCATTCACTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACATTGACTGGGTTCCACTTTGCTGTGACGGCACTTGTTGGGATGGTGTCAAATGCCACGGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAATTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTTGGATTTTACCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGATCCTTCATAATAAGCGTTACTCGAAGGAGGTTACAATGTCTGTTGCTGGTTGCTCGTTATCGCGTGTGGGCGTTTGCACAGTAACTGATGTCAAGGTTAACGCTAAAGGTTTCATTTGTGCTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348074" ref_strand="+" ref_description="SGN-E348074 [cTOF-31-J15]">
      <seq>tttctctctcttcaaattccattttttttttttcagatcttcacttcccacgcaaaggagaaaaacaacacatcccacatgctccattttctctctcttgtttctctctctacaaaataaagcaaagtgttatgcttttcagtagtatcacaaaaatataaatctgaatctacttaattgggctcattcgttattgtagatctgcaaaattgtgttgatatttgtgttatatattgtttaagaaaaaaaaaaaatcctgcccctctctgttaaacgagttgggtaggtgatttggttttgctattttggattatcaataattgttgttataatatatctagttgttattgttaagtatggagagcgagaagaaatcgtctcatgtatcggatatgggagcatgggcgatgaatgttgttagttcggtgggaattattatggctaataagcagcttatgtcggccaatggttatgcattcacttttgctacaacattgactgggttccactttgctgtgactgcacttgttgggatggtgtcaaatgccacagggctttcctcatcaaagcatgtacctttgtgggaacttatctggttctcagttgttgcaaacatgtctatcacagggatgaacttaagtctcatgctcaattcagtcggattttaccaaatctcaaagttgagcatgattccagtggtttgcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="48594" stop="45701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48294" g_stop="47810" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47809" i_stop="46812" i_length="998">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46811" g_stop="46627" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="671" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46626" i_stop="46039" i_length="588">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46038" g_stop="46001" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="709" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E348074" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48294" e_stop="47810"/>
          <exon e_start="46811" e_stop="46627"/>
          <exon e_start="46038" e_stop="46001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAG-AAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTGGTAAATCTCATTAACTTTTTGCCGGTGTTATATATAGATCTTGTGAGAATTTTTTGTTTATTTATACGTAGTATGTATTTTATTATTTTTCGTGGCGGATCCAGGATTTGGAGGTTGCGGGTGCAGGGATGAATATAAAATGTTGTAATTTGTCTGTATTCTGGTTGATTTTTGTATTAATTTAGCTTGTTTTTTGTTCATAAATGTGCAATTTGATCTGAATTTTGAATTTTTGTTTCGTAATATGTTTTAATTATGAATGGAGAAGAAGGAGAAGAATTGTTTTTTTTGGCTAGATGGATAATGGATGTAGAGTATCATGTTTACAGTTCATAATGAGCTTAATGAAGCATATATTCAATTCTCAGACCATAGAAGCATATGTTAACTATAAACCTCGAATTTATTACTAAAATGAGAAAAAAAAAGATGTTTGATATTGTGTGTGGGTGTGGGGGGGGGGGGGGTGATATTTGAAAAACAAGATATCGACTATAGTACCTATTAAATTGAGATCAACTCTTTGATTCGCCTTTGCTAACCCGTGTTCTTAAGATTTGAAATATTGTTTGCATGGTTATATACAGTTGTAATCAGATTTGCCATTTCCACTGCCTTAAAAGTATTGGTTTCGTAGAAGAAGACGTTGGCTTGAAATTAATCCCATTGTGACTAACGGATTCCTTTACAATATTGAGCTAGTGTATCTCAATACATTCCTCTGGTTGCTTTGTTTCGTCATTTTGAACTAGCTTGTCTAGGTCTAGATACATTGTGCTATTTTGACTACAAAGATTTTTAAGGTTTGTATTTGAACTGAAAATAAACTCCTTCTGGCTTAGTGGTGGAACCTGACGTTTTCGGCTTTCCTTCTTCCACTTCTTGAGGTTTAGAAGTTTGTTGTTCCTATTACATTCCAATTCCCCTCTTCTGTATGTATGCTTTTAAATTTGGATGGTCCATCTGTCAATTTTAATGTCATGGTTTGTTTCCTCCAGCTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAAGTATGATAATCTCTCTTTTGTTTTATAGCTGTAACGTTTCTTGTTATGTCTTGTATTTTGTTCTCTTGAAAAAGATAAGTCTTGAATTTTGGCTATGTCTATCAGAGGGTGAAGAATATTTGCTAACAACGTGATTATGCTATCAGCTTTCAGTCCTTTCTCATAAAATGATTTCATCTTTTGTTGTTTGCGTTCGTGATCTATTGACAATGAGTTAACTTATACTGATCAGTATCTTCATTATCTGAAATGACAAAACATGGTTTGGGTTCAATTCGAAAGGGAAAGGAAGGATAGAAAATTGAAAAAATGAGAATAGAATACCAGTCAGGGTGTTCCATTTTCTTTCTTTGATTGATCTAAAAGGATAATTGCAGGTAAGGAATTGATCTTCCCTCTTCCTCCTTCATTGCAAATCAGTTAGTAGAATGGAAACCAATAGTAAAAAGAAAAGTTGTTTCCTTTCATTTACATATTAGCTCAATGTATTATATCGTATACTAGCAGTGCCATTTGTTTTATTTTTTGTTCCTTGGTGAAATTTCATTTTATATGGCTAAAGTTCTTTTTTTTTTGGTTGGGGTGTAGATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTAT</genome_strand>
        <mrna_strand>TTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAGAAAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATCTAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341648" ref_strand="+" ref_description="SGN-E341648 [cTOE-23-L19]">
      <seq>tctcttctttctctctcttcaaattccattttttttttttcagatcttcacttcccacgcaaaggagaaaaacaacacatcccacatgctccattttctctctcttgtttctctctctacaaaataaagcaaagtgttatgcttttcagtagtatcacaaaaatataaatctgaatctacttaattgggctcattcgttattgtagatctgcaaaattgtgttgatatttgtgttatatattgtttaagaaaaaaaaaaaatcctgcccctctctgttaaacgagttgggtaggtgatttggttttgctattttggattatcaataattgttgttataatatatatagttgttattgttaagtatggagagcgagaagaaatcgtctcatgtatcggatatgggagcatgggcgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="48601" stop="47582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48301" g_stop="47882" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E341648" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48301" e_stop="47882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAG-AAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATG</genome_strand>
        <mrna_strand>TCTCTTCTTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAGAAAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347577" ref_strand="+" ref_description="SGN-E347577 [cTOF-26-I24]">
      <seq>aaagaagaggtgccttatacagtatttgcatcacagagcccatacgtggaggctccacagtttaccggtggtcaatccagctataacttccccatgccgactgcaccaccaggtgcgcagagacacaggtagacagacaaatggtggacgccgcaagaatttgtgtagcttgtgaatttgtagtgagtttgagtttcttatgtatccctagtgtgctatatttaaagcataattcttgcttagcagagaaaagcttctgtcatattgctttttatgaaggactgctttgtaattaatatagttattagagtgtaagttgtgtggcctgtgaatgcaaaatattgtatattgcattggtctattcttcttgtttgttgtattaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="53388" stop="51231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53088" g_stop="53053" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53052" i_stop="51882" i_length="1171">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51881" g_stop="51523" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="395" r_length="359" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E347577" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53088" e_stop="53053"/>
          <exon e_start="51881" e_stop="51523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAGGTGCCTTATACAGTATTTGCATCACAGGTACTGCTCTGATTTGTGTTCTATTCCTTTATGAACAGCTAGCTAACTTGCACAGGTTTGGTTCCTTTACTGGCCTCTTTCTTTGGTTAATTGCCTTTTTGGTCCTCAGATTGTAAGTTCAAAACGAATTTCTGTTGTATATTGCTGTGCTGAGAACACTTAGCCTTTGGTATATTTGAAAATGAGGTATTGTTCCTTTTATAAATGAAGTCAACCAAAGATATAATTATCAACATTATTGCATTATGGCTGCCATCACCTTCCTAACTCCCCCCCTACTCTGCCGTCACCACCAATCCCTGAGACTTTTTTCCCCAACTGTTCACTGGCACTTTGGTTGGAGATGTTTGGTTGCAATAGATAGGTAGTTTGGGAGAGGTTTTCAGGGTTATATGCTTGGGGTGGGGGGTGGGGGGTTGTGGAGGAGGGGGGGGGGGGTAGAGAGGGGCTGAAGAAAGCAGTGGAGCTTTAACGTTTCAATTGGATTTGGTTGATTCTATTAGTGGGGGTAAATTTGCTTGTTACGCGAACTTGGAAGTCTACTAATTGTGATTACATACATAACTGGTTCAAGACACAGAGACATGGTAAAAAAGAGAGCTCTTTGGGATTGTTATGCTTGGAAGGACAACTATTTTCTCCTTTTAGAGATACAAGAGGAACTAGTCAAAAGTAGATTTTCACCTTGGGAATTGCTACTTGCAACTGCAGCTTAGTGAGAGATTTACTTGCCATGCGTCGCATGTCAGTGTCATGTAGATGCAAGGGCAGAAAAGGATTCAGACTAAAAGGTTTCTCCTGACTTATTTTCTTTCATCTTTTTGGAGGTGAGTTTGTAGAACAGTTCAGGATAAAAAAAAACCTTCGGCTCTATCCATGCATTCGCTGCATGACAATATCATTAAGAGATGGTAAAGTGATAAAGAAACGGGTGGAGGGTAATATTCTTGCACTTCTTCTGTCAATCTTAATTTCCTTTTCCTTTTAGTGTTGTCAAGAAGAATATATCGTGTTTTACATCTACCAAAACAATAGAAGGAAGATATTCCATTGTAATGAGTATATCGTCTATTATAGGAAATGTTCCAACATCTATGATTCATTTCAAATGAAGCAAAGATCATGTCATTTTGTCTTTTACATCATCTTAACTTTTGGACATATTTTCCAGAGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAACCAATTTAATGT</genome_strand>
        <mrna_strand>AAAGAAGAGGTGCCTTATACAGTATTTGCATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339662" ref_strand="+" ref_description="SGN-E339662 [cTOE-16-G1]">
      <seq>tggaagcttaatgtagcagatattgaagccactctttctcgtgtttgtcaaatggttctacaagacaacaacgtaaagaaagaagagcttcgtgcccgcgcaaaggggttaaagactctcggcaaaatttttcagaaggttaagccagtcaatgaagtcgaaactacagaaaatggcgtccataagctggacggaaatgaaccaagctatgactctcgttcttcaactgcatcagtaccatctcaaaacaaagaagaggtgccttatacagtatttgcatcacagagcccatacgtggaggctccacagtttaccggtggtcaatccagctataacttccccatgccgactgcaccaccaggtgcgcagagacacaggtagacagacaaatggtggacgccgcaagaatttgtgtagcttgtgaatttgtagtgagtttgagtttcttatgtatccctagtgtgctatatttaaagcataattcttgcttagcagagaaaagcttctgtcatattgctttttatgaaggactgctttgtaattaatatagttattagagtgtaagttgtgtggcctgtgaatgcaaaatattgtatattgcattggtctattcttcttgtttgttgtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="53810" stop="51231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53510" g_stop="53457" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53456" i_stop="53374" i_length="83">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53373" g_stop="53293" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="135" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53292" i_stop="53203" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53202" g_stop="53053" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="285" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53052" i_stop="51882" i_length="1171">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51881" g_stop="51526" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="641" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E339662" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53510" e_stop="53457"/>
          <exon e_start="53373" e_stop="53293"/>
          <exon e_start="53202" e_stop="53053"/>
          <exon e_start="51881" e_stop="51526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCTTAATGTAGCAGATATTGAAGCCACTCTTTCTCGTGTTTGTCAAATGGTTGTTCACTTTTATCATGTTGTTTTGTGGCTTATTCTTGTATTTTTCATATTTATTTGTGTTAATATTCTTTACTTTGTTAGGTTCTACAAGACAACAACGTAAAGAAAGAAGAGCTTCGTGCCCGCGCAAAGGGGTTAAAGACTCTCGGCAAAATTTTTCAGGTACTGTTGTTGACCTATGATTAAGTAGGTAGCGTGATCCTCTCAATTGGTTAACCTTGTTGTTCTGTTGAATGATATTCTTATGTACAGAAGGTTAAGCCAGTCAATGAAGTCGAAACTACAGAAAATGGCGTCCATAAGCTGGACGGAAATGAACCAAGCTATGACTCTCGTTCTTCAACTGCATCAGTACCATCTCAAAACAAAGAAGAGGTGCCTTATACAGTATTTGCATCACAGGTACTGCTCTGATTTGTGTTCTATTCCTTTATGAACAGCTAGCTAACTTGCACAGGTTTGGTTCCTTTACTGGCCTCTTTCTTTGGTTAATTGCCTTTTTGGTCCTCAGATTGTAAGTTCAAAACGAATTTCTGTTGTATATTGCTGTGCTGAGAACACTTAGCCTTTGGTATATTTGAAAATGAGGTATTGTTCCTTTTATAAATGAAGTCAACCAAAGATATAATTATCAACATTATTGCATTATGGCTGCCATCACCTTCCTAACTCCCCCCCTACTCTGCCGTCACCACCAATCCCTGAGACTTTTTTCCCCAACTGTTCACTGGCACTTTGGTTGGAGATGTTTGGTTGCAATAGATAGGTAGTTTGGGAGAGGTTTTCAGGGTTATATGCTTGGGGTGGGGGGTGGGGGGTTGTGGAGGAGGGGGGGGGGGGTAGAGAGGGGCTGAAGAAAGCAGTGGAGCTTTAACGTTTCAATTGGATTTGGTTGATTCTATTAGTGGGGGTAAATTTGCTTGTTACGCGAACTTGGAAGTCTACTAATTGTGATTACATACATAACTGGTTCAAGACACAGAGACATGGTAAAAAAGAGAGCTCTTTGGGATTGTTATGCTTGGAAGGACAACTATTTTCTCCTTTTAGAGATACAAGAGGAACTAGTCAAAAGTAGATTTTCACCTTGGGAATTGCTACTTGCAACTGCAGCTTAGTGAGAGATTTACTTGCCATGCGTCGCATGTCAGTGTCATGTAGATGCAAGGGCAGAAAAGGATTCAGACTAAAAGGTTTCTCCTGACTTATTTTCTTTCATCTTTTTGGAGGTGAGTTTGTAGAACAGTTCAGGATAAAAAAAAACCTTCGGCTCTATCCATGCATTCGCTGCATGACAATATCATTAAGAGATGGTAAAGTGATAAAGAAACGGGTGGAGGGTAATATTCTTGCACTTCTTCTGTCAATCTTAATTTCCTTTTCCTTTTAGTGTTGTCAAGAAGAATATATCGTGTTTTACATCTACCAAAACAATAGAAGGAAGATATTCCATTGTAATGAGTATATCGTCTATTATAGGAAATGTTCCAACATCTATGATTCATTTCAAATGAAGCAAAGATCATGTCATTTTGTCTTTTACATCATCTTAACTTTTGGACATATTTTCCAGAGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAACCAATTTAA</genome_strand>
        <mrna_strand>TGGAAGCTTAATGTAGCAGATATTGAAGCCACTCTTTCTCGTGTTTGTCAAATG...................................................................................GTTCTACAAGACAACAACGTAAAGAAAGAAGAGCTTCGTGCCCGCGCAAAGGGGTTAAAGACTCTCGGCAAAATTTTTCAG..........................................................................................AAGGTTAAGCCAGTCAATGAAGTCGAAACTACAGAAAATGGCGTCCATAAGCTGGACGGAAATGAACCAAGCTATGACTCTCGTTCTTCAACTGCATCAGTACCATCTCAAAACAAAGAAGAGGTGCCTTATACAGTATTTGCATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598851" ref_strand="+" ref_description="SGN-E598851 [51825]">
      <seq>ctgagattaagaaagcatactacattaaggcacggcaggttcatcctgataaaaatccaaatgaccctctagctgcacagaattttcaggtgttgggagaggcttatcaggtactgagcgatccatctcaacgacaggcttatgatgtacatggaaaatcaggaatttcaacagatgcaatcattgatcctgcagcaatttttgctatgcttttcggaagtgaactttttgaggagtacataggtcagcttgctatggcatcaatggcttcattggatattttcactgaaggtgaagattttgatgctagaaagttacaagagaaaatgagggttgttcagagggagagggaagaaaagcttgctgaaactttgaaggaccggctaaatctatatgtacaaggaaataaagaggactttgttcgtcatgcaaaagctgaggtgttgaagctttcaaatgcagcttatggtgttgatatgttaaacacaattggatacatatatgcaagacagtcagcgaaagagctcgggaagaaggcattatatttgggtgtgccttttattgctgagtggttcagaaacaaaggccattttatcaaatctcaagtaactgctgcaacaggtgctattgctttgattcagcttcaagaggacatgaaaaggcagctcagtgcagaaggaaactcgcactgagggaaagaacttgaaggagtacatgcaatcccacaaaaaagctaatgattgattctctctggaaagcttaaatgtacgcagatatggaaagccactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="60282" stop="53175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59982" g_stop="59954" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59953" i_stop="58570" i_length="1384">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58569" g_stop="58510" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="89" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58509" i_stop="58422" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58421" g_stop="58339" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="172" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58338" i_stop="58187" i_length="152">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58186" g_stop="58027" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="332" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58026" i_stop="56776" i_length="1251">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56775" g_stop="56646" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="462" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56645" i_stop="55129" i_length="1517">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.685" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55128" g_stop="54970" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="621" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54969" i_stop="53636" i_length="1334">
            <donor d_prob="0.755" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53635" g_stop="53475" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="791" r_length="170" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E598851" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59982" e_stop="59954"/>
          <exon e_start="58569" e_stop="58510"/>
          <exon e_start="58421" e_stop="58339"/>
          <exon e_start="58186" e_stop="58027"/>
          <exon e_start="56775" e_stop="56646"/>
          <exon e_start="55128" e_stop="54970"/>
          <exon e_start="53635" e_stop="53475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGATTAAGAAAGCATACTACATTAAGGTATATATAATTATCTTATTTGTATTAACCTTTATTTATCATTTTAATACACTTAGGGATGTAGTTATAAGTATGTGCATGAAGAATTAAAGAATTTTTTTTCTATCTGCACTTGCTTGTCTGGTTTAAACTGAAAGGTAAGTTGCGCGGACTCTTCAATTTTGATGCCGCAGCCGTGTCGGATTCTCCCAAAATACACTACTTTGGCGAATTCGATACGCACATGTTGACATTTTTGAAGAGTCAGAGCAATATAGGCTGAAAGTGGATGATTAGGGAGTATATGTTAAGGAGTTATATTGGGGCAGTGGAAAGGTTTTATGCTTGAAAAAGAAGCTACCTTTAATCCCATACGTATGATTTCTTTATTAAGGTACTACAAAGAATAATCCTTTTTGCTATCTATCAACACACACGCGCACATGAAGAAGAATCTTTGTCTAGGTAATAGAAGGAGATTGTAGACAGAAATTGTTAATAAATAGATAGAATGGAGCATGCAAGAAATAGAAGTTTGTAATTCCTTTTAGGATTGTGGTTAACATTGGGGATTTCCGAGTATTTATTTAAGGCTTCTTTTTATACACATTATCGCTGAAAAATTTAAGACTAAGACTGAAAGATAGCATTTATTTGTTGAACGTCATGTCATTGTACATTTTTCCTACCCATATGTGATGCCATTACTTTTGACGGAACAAACTTGATGAATTGGTGAATTATGATAAATTCTCTTCTTTAAACCATTTTTCATGCTAACGTGACCGTTTGAGTATCAAATCTACAACTAGTCAAATGGACACTTACTTTTCCCCCCTGATTTAGCCAATTGGATATTTGATAAAGACGAGTCAGTTCTCAGCACTATGCTTTACTTCATCACCCCGTGGACAAAACGATTAGATTGTTGGACTTGACAATCTAATTGGAAGACTGATTTCCTTAATATTTTGGGTTACATATTTTTAATGGGGATGTTAATAGTGTTTGGAGTCTTCACCAGCTATGTATTTATTTTCTTAATTTGCGACTTCTAGTTGCTACCTTGAATAAGTTAACTATGATTTATCCACAAGAAATTTTGATTTTGTTTTTTCTCTTATTTCTCGAGGTCCTGGTCATTTTCTTAAAACTCAGCCTCAGGAATGAGCGTACTGCCACACAAGTACTACAATAAAAAGTGACGAAGATAAAAATTTGTAGCTCACAGCATTTGAAAACTTCTAACTTTACTTTTCCTTATTGTAGTAGAATTTCCCCCTTTTTGTTTTAATTTTTAATCTATTTGCCTTTTTTTTGTTTTAATTTTCAATCTTGACTCTGTTTATTTGAGCTTTCCATGTTTTGACTTCTTCTTTACTACTAACTTTCATACGTGGTATAGGCACGACAGGTTCATCCTGATAAAAATCCAAATGACCCTCTAGCTGCACAGAATTTTCAGGTAAGTCATTAATCTAACTTTTTTTTTGGTTAATTAGGAGATATTCCTTCTATTGGGTCAATAATTCTTGTTTCCTCCTCGGTTGCAGGTGTTGGGAGAGGCTTATCAGGTACTGAGCGATCCATCTCAACGGCAGGCTTATGATGCACATGGAAAATCAGGAATTTCAACGTAATTTCTCTCTTGTATTATTGATAACCAGGACATTTGTATTTCTCCTAGTACAATTGATATTTGGTACCTGTATGTACATATAATTTGCTTGAATGTTCTTCTGTGTATTCACATGTTAATCAAACTTCTATGATTTGAATTGTTTTCAGAGATGCAATCATTGATCCTGCAGCAATTTTTGCTATGCTTTTCGGAAGTGAACTTTTTGAGGAGTACATAGGTCAGCTTGCTATGGCATCAATGGCTTCATTGGATATTTTCACTGAAGGTGAAGATTTTGATGCTAGAAAGTTACAAGAGAAAATGAGGGTACAGTTCATCTCCTTTTAGCATTTATAATTGTAAGAGTGTTACTTGAGAAAGTTGAATTCAGAACATTTTTATTGACTTTGTGTATATATGGGTAAAGCTTGCAAAAAGATAAAGAACTGAGAAGTAGCTTGAGAAATGGTTATAATGGCACCTAACTATATGCCTATGTATAAAAAATAACATTTATTTCCATGATATTATAAACTATGGCTTGTTAACCTTTGTTGTTGCTACTGTTCTGTTTCTTAACCACATTTTTCCTTTTCAAACCTTCTTTTAAAATTGCTTTATTTGAGCTGAGGGTTAAACCTCTCTACTGCCTCCACAAGGTAGGGATAAAGTTTGCGTATACACCACCCTTCCCATACCCCGCTTGTGGCATTACACTGGGTATTGTCGTTAACTTAATTAACCTAGAGTCCCACATGGTGCCTCATTCTTTTACTTTTAAAGCAAAAAAAATTTCCCCAAAGGCCAAAAGAAGAGAGAGGCCCAGATATATAAATAAGAGATAGAAAACATGCATCTAGTTGTATAAATTAAGGGAAATCATTCAGATGATTTGGACATATCCATCAACCTTAGATAGCGTCAGATGCAACTGCTGATACAATAGGTAAGAATAGGGGAATCAGAAGAAATAACAAGCCTTTTTTTCTTTATACATTGATTGTCAAGTAAAGAAGGATCGACGTGTGTAGTAGTGGGAATCTGCAGTGTGATTTTTTGGATCCAGGTTTTCATTGTCCGTACTACAATTTTTTCAGCTAGCTTATCTGTTGCTTGTTTGTTTTGTAGTACAGTTTGCTGGTTGAAGTTCTCATAATAAGAGTTTACGCCTTGCAAGCTGTATTGCCTAAAAAAATCTGTGGGGGTAATTCTGTTGCTAGTGGGTGTATTCGACTTCAAGACAGCAGTGTTCTTTTATTTACTATTTGAATGATACATTTACCTATTCCTCTAGTTATCAAGATGTTAATCATCGATATTACATTGTATGCTATTCACAATGAATTGGATATTGATGTCACAACAATCTGTTTGAGCACTTTGCAGCTTTACATCACAATGAGTTGGATCTCATATCAATTCATTAAAAAGATGCTAATATGCAGTCCAGTTTCAAAAAAAAGATGCTAATATGCAGTCATATGGTCTACCACTACTTGGCTGGAGCCTACTGTATTTCATAGAAGCTGTATCAGGATATGTATAAAATTAACTTCTTTCCTTCTTAATCTAATACAGGTTGTTCAGAGGGAGAGGGAAGAAAAGCTTGCTGAAACTTTGAAGGACCGGCTCAATGTATATGTACAAGGAAATAAAGAGGACTTTGTTCGTCATGCAGAAGCTGAGGTGTCGAGGCTTTCAAATGCAGGTTAACATTGTCATACCTACTACATGATTCCTTCTACCCTTTTTTTTGTATTGAATTGCTTTTCTGACGTTGGCAATGATACTCAAGGGGTAGTACAAACAATATGCATATTTACAGCTGTATTATGGGCTGTGAAAAGTTGGTTTCGTGAGTTGTGCGCACTAAGATCTTTAAATTTCCAGTAACTTTTGGAGTCGTGACAATTCATGATTGAATAAGAGGTATCTAAATATTAAGGGTTATTTGGTATGTAGGAATGGCTAAGGTTTCTCGTCTCTCCATCACAAGTGAAAGATTTAATGCAAAGCATGGCTCTTACAGGACCTTGTGTTGGACACTGGAAAAATAATAAGTCAATAGGGGCCAGAAGGAGACGTAAGCAAGGTACTGAACCCTATACGTTCGTTCTGGTAAGTAGATGGAGCAACCAAGATGGTCAAAGGTAGAGGATGTGCGAAGCTAGGCAAATCTAAAGAAAGTGGCACAGACTAACATGACATGTTCATGAAGGTTGGGTAAATAGCAATGATGTCCCATTTGAATCTGAGAATAATCTAATAACAGACATTTATTACCGGGAGAGGTTATTAGGGTCAAGTTATGAAGAAAGCAAGTGCTTCTAGAGACACTAGCCAGAGGGAATATAGAAGTGAATATGGCAAGCCAACAACCTGTGCAACTTTATTCTTATTTTAAAGAAGGGCATGTATTTAATCAGGTAACGAGATGTGGGTGTAACATCTCCTAAAAATGCAAGTTAACATGAGATCTATTAGGCGCAAGCAATTTCAGTGAAATATCTTTTCTTCTATCAACTACTCTGTTTATTTTTTGGTGTGTTCTTGTACTAAAAATAAATTTTGGTGCATTTCACTATGGAACATCCAAATAGAAGTGCCAATTTGTTTTATATTTCAACAAACAAAATCTAAAAAATGTAAGGCAGATCAGAACAAATTTTATGCCAGTTCATATGAATAATCATATCATTTAAACCTACAAAACAGTGAAAGTGCATTCAAAAGGTGATTCAGCTAGGATCTCAGACATCTGTTGGACTAAAGACAAATGAAACTATATCCAAAGGTTCAAACCCTAGCTGCAGGCAAAAGTTTGGTATTCAATTGGAAAAGGGTAGAGAGGAAGCGGGCCTATTATCGCCGAGTTTTAAACTGTGCGCCATTGACTTTCGGTAACTTCTCAGTCGTAATGAAACTATTGAAGAGACTAGTTTGAAAAATAGAAGTTGCTTGTGGAGACAAGAACTTGTAGTCATATAAGGAGCACCTATTTTGGTATTGAGGCGTAATAGTTGTCGTATAAGCACCATTTATGGCATTGAAGCTGTTTTGTCCTATTCTACTGACTTACATTCTCTCTTTCTCAGCAATCCCCTTTCCTTTTCTTTCCCTCTCAACTCCTTAGCTTTGACTTTCTTTATATTTTTGTTTGTCTCTTCCAATTGACACGGTTATAGTTGCAGAATCTTTTCTCATCAACTCTATGTTTGGTAACAGCTTATGGTGTTGATATGTTAAACACAATTGGGTACATATATGCAAGACAGTCAGCGAAAGAGCTTGGAAAGAAGGCATTATATTTGGGTGTGCCTTTTATTGCTGAGTGGTTCAGAAACAAAGGCCATTTTATCAAATCCCAAGTAACTGCTGCAACAGGTTTGTTGTGCTGGCTTTAAGCGGTGCTCTGTGGTTGACATTGTGCTTCTTGTTTCTGAAGTTAGGACAAACCACTTGCACCTTGTTCGCTCAATCTCTATATTAATCTGTGCATAGAGCTTTCTGAAGAATAATTCCTTGCGGTTTACGCTCTTCTTTCAGTTTTGTGATTTAATTAGTCCAGAATTGGGTTTTGACTGTTTTTTCTTCTGTTGGTTGATGTCATATAATCTTGATGAACTTAGTAGACAGTAGGATAGTATTATAGGTAGAAAATATATGAGAGGAGTGTTAAGCTGAGGTCAAATAAAGTATATATTAGATTTTAAAAAAAAAACTTTCTTCAGTTTTCAGCATGTACACCGATCTCTAACCAGAAATGAGGCCTACACCTGGTAGACAAAAAAATGCATTGCTAAATCTTTTCCCACTCGGAGCGCCATCCCTGCAGCCATTTGTTGGATCATTTGAAATGAAAGAAATGCCAGAATCTTGGAGGGAAAGAATGTTCCATCATTTGAAATGAAAGAAATGCCAATGTTTCAGTCCTTAAACAGAGTAGTATATCCTTGCTTAGTTTTGGTGTAATATGGTAGTGGTAAAAGAGTTCAAAACGATGCTAGATTCTGTCACTGCATTACTCCTGGAATGTGTTTTTTGTTAAATGTTTTCACTGCTAACGCTTTGCGTGTTTTGCGTCAATAAACTTTTACCTTCTCAAAAGAAAAAATAAATTGTATGTTCTAGTTTTAGTATAGACATGCTATGAAATTGTTTCTCTTAAGCGGTTTTAACTCTCTTTTTTCTGTTGGAAAAATTTGATTCCTTCCTCTTACATGTTTCTTTACATACCTTTGCCTGAAATAGTACAAGAAAAGTTTGATTTTTTAATAGTTCTAGCTCATAAATGCCTTCCAAAATATCTTCCTTATCCAAATATTTATAGAAAGGGAATTGCAAGGTTTGAAGATAAGCTTTTGGATCTTTCTTTTATCACTTCTATCATAATGTGTCATCAATTATAGCTGATGTGATTGTGATTAATTTTGATCATTTATCCAAACCTGCATAACAGTAAAGTTATTTTTGTGTGACCTATAGGTCATGGATTTGTACCATGAAATCAGCCACTGATACTTGCAAGTGTCAGGGTAGGTTGCCTACATCACAATACCCTCTTGGAGTGTGTCCCTTCCCTGAATCATATGTAAACATTGGATGCTTCGTGCACTGGGTTGTCCTATTCATCCAACCTCTGCGTGTATTGAATGAGATACTTGATCGTCATATGTGGTAATGTCCTTCTGAAAGAAAAACACTTCATGCTTTTGTAGGTGCAATTGCTTTGATTCAGCTGCAAGAGGACATGAAAAGGCAGCTCAGTGCAGAAGGAAA-TTACACTGA-GG-AAGAACTTGAA-GAGTACATGCAATCCCAC-AAAAAGCTAATGATTGATTCTCTCTGG-AAGCTT-AATGTA-GCAGATATTG-AAGCCACTCTT</genome_strand>
        <mrna_strand>CTGAGATTAAGAAAGCATACTACATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGGCAGGTTCATCCTGATAAAAATCCAAATGACCCTCTAGCTGCACAGAATTTTCAG........................................................................................GTGTTGGGAGAGGCTTATCAGGTACTGAGCGATCCATCTCAACGACAGGCTTATGATGTACATGGAAAATCAGGAATTTCAAC........................................................................................................................................................AGATGCAATCATTGATCCTGCAGCAATTTTTGCTATGCTTTTCGGAAGTGAACTTTTTGAGGAGTACATAGGTCAGCTTGCTATGGCATCAATGGCTTCATTGGATATTTTCACTGAAGGTGAAGATTTTGATGCTAGAAAGTTACAAGAGAAAATGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCAGAGGGAGAGGGAAGAAAAGCTTGCTGAAACTTTGAAGGACCGGCTAAATCTATATGTACAAGGAAATAAAGAGGACTTTGTTCGTCATGCAAAAGCTGAGGTGTTGAAGCTTTCAAATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGGTGTTGATATGTTAAACACAATTGGATACATATATGCAAGACAGTCAGCGAAAGAGCTCGGGAAGAAGGCATTATATTTGGGTGTGCCTTTTATTGCTGAGTGGTTCAGAAACAAAGGCCATTTTATCAAATCTCAAGTAACTGCTGCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATTGCTTTGATTCAGCTTCAAGAGGACATGAAAAGGCAGCTCAGTGCAGAAGGAAACTCGCACTGAGGGAAAGAACTTGAAGGAGTACATGCAATCCCACAAAAAAGCTAATGATTGATTCTCTCTGGAAAGCTTAAATGTACGCAGATATGGAAAGCCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338726" ref_strand="+" ref_description="SGN-E338726 [cTOE-21-M15]">
      <seq>aaattgaattttttcttctatttttgtacgtggaattgatgttttctgttcttcgatcccctttttttcgaacttcatagcagtttcattgttttaatctcttaaattgctgaccctttcggtttgttagaggaaaaatttgatcttttttttttttttgattttgtacgtggggttgttgtttcctgttcttagatccccttttttgaaacctcatagcagtttattgttttaatctcttaaattgctgacccttttggtttgtttagaggaaaaattcgatcttttcttcgattttttgtacgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0057G02-LQkza/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0057G02.1" temp_strand="-" temp_description="C12SLm0057G02.1  AC235699.1 htgs_phase:1 submitted_to_sgn_as:gi|226192175|gb|AC235699.1| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-57G2, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="60986" stop="60080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60686" g_stop="60380" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0057G02.1" gen_strand="-" ref_id="SGN-E338726" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0057G02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60686" e_stop="60380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGAATTTTTTCTTCTATTTTTGTACGTGGAATTGATGTTTTCTGTTCTTCGATCCCCTTTTTTTCGAACTTCATAGCAGTTTCATTGTTTTAATCTCTTAAATTGCTGACCCTTTCGGTTTGTTAGAGGAAAAATTTGATC--TTTTTTTTTTTTGATTTTGTACGTGGGGTTGTTGTTTCCTGTTCTTAGATCCCCTTTTTTGAAACCTCATAGCAGTTTATTGTTTTAATCTCTTAAATTGCTGACCCTTTTGGTTTGTTTAGAGGAAAAATTCGATCTTTTCTTCGATTTTTTGTACGTGGG</genome_strand>
        <mrna_strand>AAATTGAATTTTTTCTTCTATTTTTGTACGTGGAATTGATGTTTTCTGTTCTTCGATCCCCTTTTTTTCGAACTTCATAGCAGTTTCATTGTTTTAATCTCTTAAATTGCTGACCCTTTCGGTTTGTTAGAGGAAAAATTTGATCTTTTTTTTTTTTTTGATTTTGTACGTGGGGTTGTTGTTTCCTGTTCTTAGATCCCCTTTTTTGAAACCTCATAGCAGTTTATTGTTTTAATCTCTTAAATTGCTGACCCTTTTGGTTTGTTTAGAGGAAAAATTCGATCTTTTCTTCGATTTTTTGTACGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>117</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="18049" PGL_stop="21535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18049" e_stop="18112"/>
            <exon e_start="18448" e_stop="18714"/>
            <exon e_start="19019" e_stop="19098"/>
            <exon e_start="19222" e_stop="19305"/>
            <exon e_start="19628" e_stop="19749"/>
            <exon e_start="19999" e_stop="20779"/>
            <exon e_start="21489" e_stop="21535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.214" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18049" e_stop="18112" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="18113" i_stop="18447" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18448" e_stop="18714" e_length="267"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.844">
            <gDNA_intron_boundary i_start="18715" i_stop="19018" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19019" e_stop="19098" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.952">
            <gDNA_intron_boundary i_start="19099" i_stop="19221" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19222" e_stop="19305" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.214">
            <gDNA_intron_boundary i_start="19306" i_stop="19627" i_length="322"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19628" e_stop="19749" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.792">
            <gDNA_intron_boundary i_start="19750" i_stop="19998" i_length="249"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19999" e_stop="20779" e_length="781"/>
          </exon>
          <intron i_serial="6" don_prob="0.940" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20780" i_stop="21488" i_length="709"/>
          </intron>
          <exon e_serial="7" e_score="0.936">
            <gDNA_exon_boundary e_start="21489" e_stop="21535" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18049" stop="18112"/>
              <exon start="18448" stop="18714"/>
              <exon start="19019" stop="19098"/>
              <exon start="19222" stop="19305"/>
              <exon start="19628" stop="19749"/>
              <exon start="19999" stop="20055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20040" stop="20779"/>
              <exon start="21489" stop="21535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20041" stop="20495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTATTAATTTCGAAGTTCTAAAGATCGTGGTTCTCGAATGAGCAATAGAACAAAAATTCAG : GCGTATTGTAATACGTAAACAGATACTCAAACTTGGTCTTAGCTGACAAGTAAGCATCCGAACTTTGAGAGTGCACGTGTAGACGACTCAACTTGATCCTCTGTTTCATCGTTCACACGAAAGGAACTCGATATGGGGCTTTTAGATCTGTTAGTTGCAGCATCAATGCCAGTTATTCAAATTCTTTTGATAACAGCACTTGGACTAGTTCTTGCATTAGATCGATTCGCCATACTTGGAGAGGATGCAAGGAAGCATTTGAATAAT : ATTGTGTTTTACATATGCAATCCATCACTGATTTCAAGCAACTTATCCAAAACAATTACATACGAGAGCATGAAACGATT : GTTCGATTCTTGCTTGGATTGTCAATCAAATAACAAGACCTCCTAAACATCTACGAGGCCTCGTTATAGGCTGCTGTGCTGCAG : GAAACATGGGCAACATGCTTCTCATCATAGTTCCAGCTGTTTGTAAGGAGAAAGGAAGCCCATTCGGAGCGCCTGATATTTGCCATACATATGGGATGGGCTATGCTTCCCTTTCAATGGCG : GTATGCGCGGTTTTTCTATGGTCTTATGTGTATAATATTGTCAGAATATCATCAAGTAAGAGCCCCGAAGAGGTTGAAGAAGTTAACAATTCCTCCATAAGTAAATCTGTTAGAGAAAGCTCCATAGCAGCACTCGGAGTCTCCACGGAGCCACTACTTCAGAGACATGACTTAGCACTATCAGAGCATCAATCTGAACAACTTGCACTGCCCTCTAATAGATTTGACGATAAATCTCAGGTTGATTATGGATCACATTTCAATCATGCATACTCGAAACTAACTAGTCCCTCCGTTTCAATCTGTTTGTCTTACTTTCATTTTTAGTCTTTTTCCTTTTCACCTGGCATAACGAGTGATTATTTAAGATAAGTGTGCTTTGGATTTTGAACTCTGAGTTTAACAGGTACCGCTATGGACTAAATCGAGACAGTACATGGGAGTGCTTTCAAAGAAGATGAACCTGAAGAAATTATTAGCCCCTTCTACCTGCGGAGCGGTATTCTCCCACTGTTATCCTATCTGTCTTCTGAACTCCTTTGTATTGCATGATTGTGTTAGTTCGTATCTACAACATGTAACTTGTTAGATGTTTCCGTCAATATGATAGGCAACTCAGGGTTCGTCTTGTTTACGATCTAGTTATTGTGGGAGTAGTATTGACCATTGGTCCTGTATAGATTGCAGGTTTTGTTGTTGGACTTATACCTCAGATCAGAAATTCAATTATAGGTGATGCAGCTCCTCTTCATGTGATTCAAGATACAGCTTTGATACTTGG : AGATGGAGCTGTTCCGCTTCTAACGCTGATCATGGGAGGTAACCTTT</gDNA_template>
            <first_frame> F  L  L  I  S  K  F  *  R  S  W  F  S  N  E  Q  *  N  K  N  S   : G  V  L  *  Y  V  N  R  Y  S  N  L  V  L  A  D  K  *  A  S  E  L  *  E  C  T  C  R  R  L  N  L  I  L  C  F  I  V  H  T  K  G  T  R  Y  G  A  F  R  S  V  S  C  S  I  N  A  S  Y  S  N  S  F  D  N  S  T  W  T  S  S  C  I  R  S  I  R  H  T  W  R  G  C  K  E  A  F  E  *   : Y  C  V  L  H  M  Q  S  I  T  D  F  K  Q  L  I  Q  N  N  Y  I  R  E  H  E  T  I  :  V  R  F  L  L  G  L  S  I  K  *  Q  D  L  L  N  I  Y  E  A  S  L  *  A  A  V  L  Q  :  E  T  W  A  T  C  F  S  S  *  F  Q  L  F  V  R  R  K  E  A  H  S  E  R  L  I  F  A  I  H  M  G  W  A  M  L  P  F  Q  W  R :   Y  A  R  F  F  Y  G  L  M  C  I  I  L  S  E  Y  H  Q  V  R  A  P  K  R  L  K  K  L  T  I  P  P  *  V  N  L  L  E  K  A  P  *  Q  H  S  E  S  P  R  S  H  Y  F  R  D  M  T  *  H  Y  Q  S  I  N  L  N  N  L  H  C  P  L  I  D  L  T  I  N  L  R  L  I  M  D  H  I  S  I  M  H  T  R  N  *  L  V  P  P  F  Q  S  V  C  L  T  F  I  F  S  L  F  P  F  H  L  A  *  R  V  I  I  *  D  K  C  A  L  D  F  E  L  *  V  *  Q  V  P  L  W  T  K  S  R  Q  Y  M  G  V  L  S  K  K  M  N  L  K  K  L  L  A  P  S  T  C  G  A  V  F  S  H  C  Y  P  I  C  L  L  N  S  F  V  L  H  D  C  V  S  S  Y  L  Q  H  V  T  C  *  M  F  P  S  I  *  *  A  T  Q  G  S  S  C  L  R  S  S  Y  C  G  S  S  I  D  H  W  S  C  I  D  C  R  F  C  C  W  T  Y  T  S  D  Q  K  F  N  Y  R  *  C  S  S  S  S  C  D  S  R  Y  S  F  D  T  W  :  R  W  S  C  S  A  S  N  A  D  H  G  R  *  P   </first_frame>
            <second_frame>  S  Y  *  F  R  S  S  K  D  R  G  S  R  M  S  N  R  T  K  I  Q  :  A  Y  C  N  T  *  T  D  T  Q  T  W  S  *  L  T  S  K  H  P  N  F  E  S  A  R  V  D  D  S  T  *  S  S  V  S  S  F  T  R  K  E  L  D  M  G  L  L  D  L  L  V  A  A  S  M  P  V  I  Q  I  L  L  I  T  A  L  G  L  V  L  A  L  D  R  F  A  I  L  G  E  D  A  R  K  H  L  N  N  :  I  V  F  Y  I  C  N  P  S  L  I  S  S  N  L  S  K  T  I  T  Y  E  S  M  K  R  L :   F  D  S  C  L  D  C  Q  S  N  N  K  T  S  *  T  S  T  R  P  R  Y  R  L  L  C  C  R :   K  H  G  Q  H  A  S  H  H  S  S  S  C  L  *  G  E  R  K  P  I  R  S  A  *  Y  L  P  Y  I  W  D  G  L  C  F  P  F  N  G   : G  M  R  G  F  S  M  V  L  C  V  *  Y  C  Q  N  I  I  K  *  E  P  R  R  G  *  R  S  *  Q  F  L  H  K  *  I  C  *  R  K  L  H  S  S  T  R  S  L  H  G  A  T  T  S  E  T  *  L  S  T  I  R  A  S  I  *  T  T  C  T  A  L  *  *  I  *  R  *  I  S  G  *  L  W  I  T  F  Q  S  C  I  L  E  T  N  *  S  L  R  F  N  L  F  V  L  L  S  F  L  V  F  F  L  F  T  W  H  N  E  *  L  F  K  I  S  V  L  W  I  L  N  S  E  F  N  R  Y  R  Y  G  L  N  R  D  S  T  W  E  C  F  Q  R  R  *  T  *  R  N  Y  *  P  L  L  P  A  E  R  Y  S  P  T  V  I  L  S  V  F  *  T  P  L  Y  C  M  I  V  L  V  R  I  Y  N  M  *  L  V  R  C  F  R  Q  Y  D  R  Q  L  R  V  R  L  V  Y  D  L  V  I  V  G  V  V  L  T  I  G  P  V  *  I  A  G  F  V  V  G  L  I  P  Q  I  R  N  S  I  I  G  D  A  A  P  L  H  V  I  Q  D  T  A  L  I  L  G :   D  G  A  V  P  L  L  T  L  I  M  G  G  N  L  </second_frame>
            <third_frame>   P  I  N  F  E  V  L  K  I  V  V  L  E  *  A  I  E  Q  K  F  R :   R  I  V  I  R  K  Q  I  L  K  L  G  L  S  *  Q  V  S  I  R  T  L  R  V  H  V  *  T  T  Q  L  D  P  L  F  H  R  S  H  E  R  N  S  I  W  G  F  *  I  C  *  L  Q  H  Q  C  Q  L  F  K  F  F  *  *  Q  H  L  D  *  F  L  H  *  I  D  S  P  Y  L  E  R  M  Q  G  S  I  *  I  I :   L  C  F  T  Y  A  I  H  H  *  F  Q  A  T  Y  P  K  Q  L  H  T  R  A  *  N  D   : C  S  I  L  A  W  I  V  N  Q  I  T  R  P  P  K  H  L  R  G  L  V  I  G  C  C  A  A   : G  N  M  G  N  M  L  L  I  I  V  P  A  V  C  K  E  K  G  S  P  F  G  A  P  D  I  C  H  T  Y  G  M  G  Y  A  S  L  S  M  A  :  V  C  A  V  F  L  W  S  Y  V  Y  N  I  V  R  I  S  S  S  K  S  P  E  E  V  E  E  V  N  N  S  S  I  S  K  S  V  R  E  S  S  I  A  A  L  G  V  S  T  E  P  L  L  Q  R  H  D  L  A  L  S  E  H  Q  S  E  Q  L  A  L  P  S  N  R  F  D  D  K  S  Q  V  D  Y  G  S  H  F  N  H  A  Y  S  K  L  T  S  P  S  V  S  I  C  L  S  Y  F  H  F  *  S  F  S  F  S  P  G  I  T  S  D  Y  L  R  *  V  C  F  G  F  *  T  L  S  L  T  G  T  A  M  D  *  I  E  T  V  H  G  S  A  F  K  E  D  E  P  E  E  I  I  S  P  F  Y  L  R  S  G  I  L  P  L  L  S  Y  L  S  S  E  L  L  C  I  A  *  L  C  *  F  V  S  T  T  C  N  L  L  D  V  S  V  N  M  I  G  N  S  G  F  V  L  F  T  I  *  L  L  W  E  *  Y  *  P  L  V  L  Y  R  L  Q  V  L  L  L  D  L  Y  L  R  S  E  I  Q  L  *  V  M  Q  L  L  F  M  *  F  K  I  Q  L  *  Y  L   : E  M  E  L  F  R  F  *  R  *  S  W  E  V  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19092" stop="19098"/>
                    <exon start="19222" stop="19305"/>
                    <exon start="19628" stop="19749"/>
                    <exon start="19999" stop="20325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDCSILAWIVNQITRPPKHLRGLVIGCCAAGNMGNMLLIIVPAVCKEKGSPFGAPDICHTYGMGYASLSMAVCAVFLWSYVYNIVRISSSKSPEEVEEVNNSSISKSVRESSIAALGVSTEPLLQRHDLALSEHQSEQLALPSNRFDDKSQVDYGSHFNHAYSKLTSPSVSICLSYFHF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18516" stop="18713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECTCRRLNLILCFIVHTKGTRYGAFRSVSCSINASYSNSFDNSTWTSSCIRSIRHTWRGCKEAFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21609" PGL_stop="22571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21609" e_stop="21727"/>
            <exon e_start="22241" e_stop="22571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="21609" e_stop="21727" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="21728" i_stop="22240" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22241" e_stop="22571" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21609" stop="21727"/>
              <exon start="22241" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22338" stop="22571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTGTGATTGGTATTGGTGTTGTCAAAGGTGCTTCATGGTTAGGCTTGGTACATGATGATCCATTGTACAAGTTTATGCTTTTACTTCATTTTGCACTTCCACCAGCAATGAACATTG : CAACTATAACACAGTTGTTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTATGGTCTTATGCATTGGCTTCAGCAGCACTTACACTATGGACAGCATTCTTCATGTGGCTTGTATCATGAGCACTAGGAAAAACGTCAGACTCCACGTGTGAGATTATACTGAATATGTTATTGTCGTTTTAGAAAAAAACGAGATTAGAAATGAATTAAATTACTATAGGAGAAAAATGATGGTTCTACTTATGTACAATAAGGATTTGCACCTCGGAAATATGTATTGATTTTTTACGTCAAATCAATCTATTTACCATGGTTAAGCAATTCAA</gDNA_template>
            <first_frame> A  C  D  W  Y  W  C  C  Q  R  C  F  M  V  R  L  G  T  *  *  S  I  V  Q  V  Y  A  F  T  S  F  C  T  S  T  S  N  E  H  C :   N  Y  N  T  V  V  W  S  W  *  E  *  V  F  S  D  Y  V  M  V  L  C  I  G  F  S  S  T  Y  T  M  D  S  I  L  H  V  A  C  I  M  S  T  R  K  N  V  R  L  H  V  *  D  Y  T  E  Y  V  I  V  V  L  E  K  N  E  I  R  N  E  L  N  Y  Y  R  R  K  M  M  V  L  L  M  Y  N  K  D  L  H  L  G  N  M  Y  *  F  F  T  S  N  Q  S  I  Y  H  G  *  A  I  Q </first_frame>
            <second_frame>  P  V  I  G  I  G  V  V  K  G  A  S  W  L  G  L  V  H  D  D  P  L  Y  K  F  M  L  L  L  H  F  A  L  P  P  A  M  N  I   : A  T  I  T  Q  L  F  G  A  G  E  S  E  C  S  V  I  M  L  W  S  Y  A  L  A  S  A  A  L  T  L  W  T  A  F  F  M  W  L  V  S  *  A  L  G  K  T  S  D  S  T  C  E  I  I  L  N  M  L  L  S  F  *  K  K  T  R  L  E  M  N  *  I  T  I  G  E  K  *  W  F  Y  L  C  T  I  R  I  C  T  S  E  I  C  I  D  F  L  R  Q  I  N  L  F  T  M  V  K  Q  F   </second_frame>
            <third_frame>   L  *  L  V  L  V  L  S  K  V  L  H  G  *  A  W  Y  M  M  I  H  C  T  S  L  C  F  Y  F  I  L  H  F  H  Q  Q  *  T  L  :  Q  L  *  H  S  C  L  E  L  V  R  V  S  V  Q  *  L  C  Y  G  L  M  H  W  L  Q  Q  H  L  H  Y  G  Q  H  S  S  C  G  L  Y  H  E  H  *  E  K  R  Q  T  P  R  V  R  L  Y  *  I  C  Y  C  R  F  R  K  K  R  D  *  K  *  I  K  L  L  *  E  K  N  D  G  S  T  Y  V  Q  *  G  F  A  P  R  K  Y  V  L  I  F  Y  V  K  S  I  Y  L  P  W  L  S  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21610" stop="21727"/>
                    <exon start="22241" stop="22365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVIGIGVVKGASWLGLVHDDPLYKFMLLLHFALPPAMNIATITQLFGAGESECSVIMLWSYALASAALTLWTAFFMWLVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30809" PGL_stop="23809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30809" e_stop="30676"/>
            <exon e_start="30097" e_stop="29925"/>
            <exon e_start="29405" e_stop="29293"/>
            <exon e_start="29032" e_stop="28958"/>
            <exon e_start="28879" e_stop="28766"/>
            <exon e_start="28674" e_stop="28607"/>
            <exon e_start="28415" e_stop="28332"/>
            <exon e_start="27939" e_stop="27886"/>
            <exon e_start="27674" e_stop="27594"/>
            <exon e_start="27496" e_stop="27403"/>
            <exon e_start="27319" e_stop="27246"/>
            <exon e_start="27027" e_stop="26917"/>
            <exon e_start="26823" e_stop="26779"/>
            <exon e_start="26690" e_stop="26634"/>
            <exon e_start="25785" e_stop="25681"/>
            <exon e_start="25103" e_stop="24987"/>
            <exon e_start="24872" e_stop="24769"/>
            <exon e_start="24593" e_stop="24428"/>
            <exon e_start="24266" e_stop="23809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.520" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.625" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30809" e_stop="30676" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30675" i_stop="30098" i_length="578"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30097" e_stop="29925" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="29924" i_stop="29406" i_length="519"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29405" e_stop="29293" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29292" i_stop="29033" i_length="260"/>
          </intron>
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              <exon start="25785" stop="25681"/>
              <exon start="25103" stop="25075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27462" stop="27403"/>
              <exon start="27319" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26634"/>
              <exon start="25785" stop="25681"/>
              <exon start="25103" stop="24987"/>
              <exon start="24872" stop="24769"/>
              <exon start="24593" stop="24583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27462" stop="27403"/>
              <exon start="27319" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26634"/>
              <exon start="25785" stop="25681"/>
              <exon start="25103" stop="24997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27462" stop="27403"/>
              <exon start="27319" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27455" stop="27403"/>
              <exon start="27319" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26634"/>
              <exon start="25785" stop="25681"/>
              <exon start="25103" stop="24987"/>
              <exon start="24872" stop="24818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27451" stop="27403"/>
              <exon start="27319" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27422" stop="27403"/>
              <exon start="27319" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26634"/>
              <exon start="25785" stop="25681"/>
              <exon start="25103" stop="25074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27277" stop="27246"/>
              <exon start="27027" stop="26917"/>
              <exon start="26823" stop="26779"/>
              <exon start="26690" stop="26634"/>
              <exon start="25785" stop="25681"/>
              <exon start="25103" stop="24987"/>
              <exon start="24872" stop="24811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25697" stop="25681"/>
              <exon start="25103" stop="24987"/>
              <exon start="24872" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25031" stop="24987"/>
              <exon start="24872" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="24106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24991" stop="24987"/>
              <exon start="24872" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="24079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24852" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24840" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24832" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24781" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24781" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24781" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24781" stop="24769"/>
              <exon start="24593" stop="24428"/>
              <exon start="24266" stop="23946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGAGTGAGTGAGTGTGTGCGTAGTAGGTGAAAAATATCAGAAATGGATGCAGATTACGGCATAGCTAGAGAACTCTCTGATCTGCAAAAGCTTCGATCTCAGTATCAACCTGAGCTTCCTCCTTGTCTACAG : GGTACTACTGTGCGGGTAGAGCTAGGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACATGTAATAAGTCGGTCTTTTCCTCACACTTATGGTCAGCCATTGGCCCATTTTCTCAGGGCAACTGCCAAAGTCTCTGATGCTCAGATAATTACCGAGCATCCAGCGAAGAG : GGTTGGAATTGTTTTCTGCGGGAGACAATCTCCTGGTGGACATAATGTGATATGGGGTATTCATGACGCCCTTAAAATTCACAATCCTAACAGTACTTTGCTTGGTTTTCTGG : GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG : GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATTATTATCGGAG : GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA : GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG : GTGAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG : TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG : GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG : ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG : GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG : CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG : ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG : AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT : GTACTTGGTCACGTCTGCTATCATATTTTGGCTGCTGGCCTCAATGGTTACATGGCTACATTGACTAACTTGAAGAATCCCGTCAACAAGTGGCGCTGTGGGGCTGCTCCTATAACT : GCTATGATGAGTGTGAAGCGGTATGGTCGTGGTCCTGGCAAGGCATCACTTGGGAAGCCTGCTGTGCATCCAGCCACTGTAGATTTGAAGGGCAAATCATACGA : ATTATTGAGTCAAAATGCGACGAAGTTCTTGCTCGATGATGTTTACAGAAACCCAGGCCCCCTCCAGTTTGATGGCCCTGGTGCTGACGCAAAGGCTATTACTCTTTGCGTTGAAGACCAGGATTACATGGGTCGTATCAAGAAATTGCAAGAGTATCTGGACAAG : GTTCGTACAATCGTGAAGCCTGGATGCTCACAAGATGTCCTGAAAGCTGCTCTGAGTGCCATGTCTTCTGTCACAGAAATCCTTTCTGTGATGGCCTCGCCTTCAAGCAATGCGAACACACCATTCTAGATGAGAACACCCCTAAACCTCACGGAAAATTTAGGAGGCAGACATATTTGTCAAACTTAACAGAATTCATAGCCTCCCCTCCCCACTCCCCCCACCCACCTACCCACCCTTTTTTCCCCCTCCGATCGTCTTCTCCACTTTGCATAAACTTTATTTAGTTACAGAAATGTTAGTCGGATTGTATGACATTAGAGAGGCTTTCAACTGTCTTTACTCTTGTAGATTGTTTTCTTTATTTGTGTTTTTGAAATTTTGACGACCTGAATAATGTTGAGATTTGAGAAGATAGTATTTATGGTGGTTTCAATGGTACATGATTTATTGGTTCC</gDNA_template>
            <first_frame> T  E  *  V  S  V  C  V  V  G  E  K  Y  Q  K  W  M  Q  I  T  A  *  L  E  N  S  L  I  C  K  S  F  D  L  S  I  N  L  S  F  L  L  V  Y  R :   V  L  L  C  G  *  S  *  V  M  Q  P  L  Q  Q  I  P  L  V  N  M  *  *  V  G  L  F  L  T  L  M  V  S  H  W  P  I  F  S  G  Q  L  P  K  S  L  M  L  R  *  L  P  S  I  Q  R  R   : G  L  E  L  F  S  A  G  D  N  L  L  V  D  I  M  *  Y  G  V  F  M  T  P  L  K  F  T  I  L  T  V  L  C  L  V  F  W  :  V  V  L  K  V  Y  L  H  R  K  P  *  R  S  P  M  I  F  L  P  P  I  R  I  K  :  V  V  M  T  C  W  V  G  Q  K  I  K  L  E  Q  P  S  K  L  M  L  Q  W  L  H  A  K  L  *  N  W  M  P  L  L  L  S  E  :  G  *  H  Q  T  L  M  L  L  N  W  P  K  H  L  P  K  Q  N  A  K  Q  K :   W  L  E  F  L  L  H  *  M  E  I  *  R  I  S  L  L  K  Q  T  S  V  L  T  Q  Y  A  R :   *  T  P  N  S  L  A  I  C  A  L  M  R  S  R  Q  K  S :   T  T  I  S  S  D  S  W  G  E  R  H  H  M  L  P  *  S  A  L  C  S  H  I  L  I  W :   *  F  L  V  R  R  Y  L  H  Q  S  L  L  F  L  T  *  Q  T  K  F  V  I  Q  F  K  L  G  L  N  K  :  I  K  T  M  V  *  S  C  C  Q  R  G  L  L  K  V  F  L  K  Y  M  L  Y  C  R :   K  F  M  A  C  S  N  K  A  F  P  L  I  R  F  P  L  N  Y  H  L  G  H  L  R  S  L  S  S  C  R  P  L  *  K  N  S :   S  S  Y  T  Q  N  Q  M  I  L  L  S  Y  H  R :   L  K  P  R  N  F  *  L  I  W  W  K  Q  K  *  I  S  D  * :   K  K  E  L  T  R  E  R  N  L  M  Q  F  A  I  S  L  V  I  K  L  G  D  H  C  H  Q  S  L  I  V  T  M  H  M :   Y  L  V  T  S  A  I  I  F  W  L  L  A  S  M  V  T  W  L  H  *  L  T  *  R  I  P  S  T  S  G  A  V  G  L  L  L  *  L :   L  *  *  V  *  S  G  M  V  V  V  L  A  R  H  H  L  G  S  L  L  C  I  Q  P  L  *  I  *  R  A  N  H  T   : N  Y  *  V  K  M  R  R  S  S  C  S  M  M  F  T  E  T  Q  A  P  S  S  L  M  A  L  V  L  T  Q  R  L  L  L  F  A  L  K  T  R  I  T  W  V  V  S  R  N  C  K  S  I  W  T  R :   F  V  Q  S  *  S  L  D  A  H  K  M  S  *  K  L  L  *  V  P  C  L  L  S  Q  K  S  F  L  *  W  P  R  L  Q  A  M  R  T  H  H  S  R  *  E  H  P  *  T  S  R  K  I  *  E  A  D  I  F  V  K  L  N  R  I  H  S  L  P  S  P  L  P  P  P  T  Y  P  P  F  F  P  P  P  I  V  F  S  T  L  H  K  L  Y  L  V  T  E  M  L  V  G  L  Y  D  I  R  E  A  F  N  C  L  Y  S  C  R  L  F  S  L  F  V  F  L  K  F  *  R  P  E  *  C  *  D  L  R  R  *  Y  L  W  W  F  Q  W  Y  M  I  Y  W  F  </first_frame>
            <second_frame>  Q  S  E  *  V  C  A  *  *  V  K  N  I  R  N  G  C  R  L  R  H  S  *  R  T  L  *  S  A  K  A  S  I  S  V  S  T  *  A  S  S  L  S  T   : G  Y  Y  C  A  G  R  A  R  *  C  N  H  C  S  R  S  L  W  *  T  C  N  K  S  V  F  S  S  H  L  W  S  A  I  G  P  F  S  Q  G  N  C  Q  S  L  *  C  S  D  N  Y  R  A  S  S  E  E  :  G  W  N  C  F  L  R  E  T  I  S  W  W  T  *  C  D  M  G  Y  S  *  R  P  *  N  S  Q  S  *  Q  Y  F  A  W  F  S  G :   W  F  *  R  F  I  C  T  E  N  P  R  D  H  Q  *  Y  S  C  H  L  *  E  S  R :   W  L  *  H  A  G  S  D  K  R  S  N  *  N  N  R  A  S  *  C  C  N  G  C  M  Q  S  F  E  I  G  C  P  Y  Y  Y  R  R :   G  N  I  K  H  *  C  C  S  T  G  R  N  I  C  R  S  K  M  P  N  K   : S  G  W  S  S  C  Y  I  K  W  R  S  K  E  S  V  C  *  N  K  R  R  F  *  H  N  M  Q   : G  E  L  P  T  H  *  Q  Y  V  H  *  C  A  L  G  R  K   : V  L  L  F  H  P  T  H  G  A  K  G  I  T  C  C  L  R  V  H  S  A  V  T  S  *  Y   : G  N  S  W  *  G  G  I  C  I  K  A  Y  S  F  *  H  N  K  Q  N  L  *  Y  S  S  S  *  G  *  T  R :   *  K  P  W  C  D  P  V  A  R  G  A  Y  *  K  Y  S  *  S  I  C  S  T  A   : G  N  S  W  L  A  Q  T  R  R  F  R  *  *  D  F  L  S  T  I  T  L  G  I  C  A  L  *  V  L  A  A  L  Y  K  K  T   : A  P  L  T  P  R  I  R  *  F  C  S  A  I  T   : D  *  N  R  E  T  S  S  S  S  G  G  N  R  N  E  *  A  I   : E  R  R  N  L  Q  G  K  E  I  *  C  N  L  P  F  L  W  L  S  S  S  G  I  I  A  I  K  V  *  L  *  L  C  I   : C  T  W  S  R  L  L  S  Y  F  G  C  W  P  Q  W  L  H  G  Y  I  D  *  L  E  E  S  R  Q  Q  V  A  L  W  G  C  S  Y  N   : C  Y  D  E  C  E  A  V  W  S  W  S  W  Q  G  I  T  W  E  A  C  C  A  S  S  H  C  R  F  E  G  Q  I  I  R  :  I  I  E  S  K  C  D  E  V  L  A  R  *  C  L  Q  K  P  R  P  P  P  V  *  W  P  W  C  *  R  K  G  Y  Y  S  L  R  *  R  P  G  L  H  G  S  Y  Q  E  I  A  R  V  S  G  Q   : G  S  Y  N  R  E  A  W  M  L  T  R  C  P  E  S  C  S  E  C  H  V  F  C  H  R  N  P  F  C  D  G  L  A  F  K  Q  C  E  H  T  I  L  D  E  N  T  P  K  P  H  G  K  F  R  R  Q  T  Y  L  S  N  L  T  E  F  I  A  S  P  P  H  S  P  H  P  P  T  H  P  F  F  P  L  R  S  S  S  P  L  C  I  N  F  I  *  L  Q  K  C  *  S  D  C  M  T  L  E  R  L  S  T  V  F  T  L  V  D  C  F  L  Y  L  C  F  *  N  F  D  D  L  N  N  V  E  I  *  E  D  S  I  Y  G  G  F  N  G  T  *  F  I  G  S </second_frame>
            <third_frame>   R  V  S  E  C  V  R  S  R  *  K  I  S  E  M  D  A  D  Y  G  I  A  R  E  L  S  D  L  Q  K  L  R  S  Q  Y  Q  P  E  L  P  P  C  L  Q  :  G  T  T  V  R  V  E  L  G  D  A  T  T  A  A  D  P  S  G  E  H  V  I  S  R  S  F  P  H  T  Y  G  Q  P  L  A  H  F  L  R  A  T  A  K  V  S  D  A  Q  I  I  T  E  H  P  A  K  R :   V  G  I  V  F  C  G  R  Q  S  P  G  G  H  N  V  I  W  G  I  H  D  A  L  K  I  H  N  P  N  S  T  L  L  G  F  L   : G  G  S  E  G  L  F  A  Q  K  T  L  E  I  T  N  D  I  L  A  T  Y  K  N  Q   : G  G  Y  D  M  L  G  R  T  K  D  Q  I  R  T  T  E  Q  V  N  A  A  M  A  A  C  K  A  L  K  L  D  A  L  I  I  I  G   : G  V  T  S  N  T  D  A  A  Q  L  A  E  T  F  A  E  A  K  C  Q  T  K  :  V  V  G  V  P  V  T  L  N  G  D  L  K  N  Q  F  V  E  T  N  V  G  F  D  T  I  C  K  :  V  N  S  Q  L  I  S  N  M  C  T  D  A  L  S  A  E  K  :  Y  Y  Y  F  I  R  L  M  G  R  K  A  S  H  V  A  L  E  C  T  L  Q  S  H  P  N  M  :  V  I  L  G  E  E  V  S  A  S  K  L  T  L  F  D  I  T  N  K  I  C  D  T  V  Q  A  R  A  E  Q   : D  K  N  H  G  V  I  L  L  P  E  G  L  I  E  S  I  P  E  V  Y  A  L  L  Q  :  E  I  H  G  L  L  K  Q  G  V  S  A  D  K  I  S  S  Q  L  S  P  W  A  S  A  L  F  E  F  L  P  P  F  I  K  K  Q  :  L  L  L  H  P  E  S  D  D  S  A  Q  L  S  Q  :  I  E  T  E  K  L  L  A  H  L  V  E  T  E  M  N  K  R  L  :  K  E  G  T  Y  K  G  K  K  F  N  A  I  C  H  F  F  G  Y  Q  A  R  G  S  L  P  S  K  F  D  C  D  Y  A  Y  :  V  L  G  H  V  C  Y  H  I  L  A  A  G  L  N  G  Y  M  A  T  L  T  N  L  K  N  P  V  N  K  W  R  C  G  A  A  P  I  T  :  A  M  M  S  V  K  R  Y  G  R  G  P  G  K  A  S  L  G  K  P  A  V  H  P  A  T  V  D  L  K  G  K  S  Y  E :   L  L  S  Q  N  A  T  K  F  L  L  D  D  V  Y  R  N  P  G  P  L  Q  F  D  G  P  G  A  D  A  K  A  I  T  L  C  V  E  D  Q  D  Y  M  G  R  I  K  K  L  Q  E  Y  L  D  K  :  V  R  T  I  V  K  P  G  C  S  Q  D  V  L  K  A  A  L  S  A  M  S  S  V  T  E  I  L  S  V  M  A  S  P  S  S  N  A  N  T  P  F  *  M  R  T  P  L  N  L  T  E  N  L  G  G  R  H  I  C  Q  T  *  Q  N  S  *  P  P  L  P  T  P  P  T  H  L  P  T  L  F  S  P  S  D  R  L  L  H  F  A  *  T  L  F  S  Y  R  N  V  S  R  I  V  *  H  *  R  G  F  Q  L  S  L  L  L  *  I  V  F  F  I  C  V  F  E  I  L  T  T  *  I  M  L  R  F  E  K  I  V  F  M  V  V  S  M  V  H  D  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30777" stop="30676"/>
                    <exon start="30097" stop="29925"/>
                    <exon start="29405" stop="29293"/>
                    <exon start="29032" stop="28958"/>
                    <exon start="28879" stop="28766"/>
                    <exon start="28674" stop="28607"/>
                    <exon start="28415" stop="28332"/>
                    <exon start="27939" stop="27886"/>
                    <exon start="27674" stop="27594"/>
                    <exon start="27496" stop="27403"/>
                    <exon start="27319" stop="27246"/>
                    <exon start="27027" stop="26917"/>
                    <exon start="26823" stop="26779"/>
                    <exon start="26690" stop="26634"/>
                    <exon start="25785" stop="25681"/>
                    <exon start="25103" stop="24987"/>
                    <exon start="24872" stop="24769"/>
                    <exon start="24593" stop="24428"/>
                    <exon start="24266" stop="24138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1863</number_coding_nucleotides>
                  <number_encoded_amino_acids>621</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISEMDADYGIARELSDLQKLRSQYQPELPPCLQGTTVRVELGDATTAADPSGEHVISRSFPHTYGQPLAHFLRATAKVSDAQIITEHPAKRVGIVFCGRQSPGGHNVIWGIHDALKIHNPNSTLLGFLGGSEGLFAQKTLEITNDILATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDALIIIGGVTSNTDAAQLAETFAEAKCQTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNMCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVSASKLTLFDITNKICDTVQARAEQDKNHGVILLPEGLIESIPEVYALLQEIHGLLKQGVSADKISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAHLVETEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATLTNLKNPVNKWRCGAAPITAMMSVKRYGRGPGKASLGKPAVHPATVDLKGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAITLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQDVLKAALSAMSSVTEILSVMASPSSNANTPF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24103" stop="23882"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EADIFVKLNRIHSLPSPLPPPTYPPFFPPPIVFSTLHKLYLVTEMLVGLYDIREAFNCLYSCRLFSLFVFLKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32068" PGL_stop="36963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32068" e_stop="32336"/>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34686" e_stop="34780"/>
            <exon e_start="34865" e_stop="34898"/>
            <exon e_start="36058" e_stop="36112"/>
            <exon e_start="36198" e_stop="36240"/>
            <exon e_start="36620" e_stop="36963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.520" acc_prob="0.839" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32068" e_stop="32336" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.375">
            <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34686" e_stop="34780" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="34898" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36058" e_stop="36112" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36198" e_stop="36240" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.520" acc_prob="0.839">
            <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="36620" e_stop="36963" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32068" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32068" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32068" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32068" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32075" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32075" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32083" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32087" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32087" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32100" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32105" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32106" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32118" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32130" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32164" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32171" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32175" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32200" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32206" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32206" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32213" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32214" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32247" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32253" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34750" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36213" stop="36240"/>
              <exon start="36620" stop="36917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCACTAGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG : ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTGCACCGTGGAAACATACTCTTGAGG : GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC : GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG : GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGATTAGCACCA</gDNA_template>
            <first_frame> I  H  *  H  Y  Y  F  W  S  N  S  *  K  K  N  C  S  *  N  S  S  K  C  F  L  F  R  L  H  L  *  Y  R  S  V  E  L  Q  S  H  F  R  L  R  S  G  *  S  V  S  I  L  L  *  E  Q  Q  L  I  T  L  L  I  Q  W  L  P  Q  N  G  L  K  K  L  *  L  F  L  L  K  G  E  A  V  I  L  L  H  L  R :   L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  H  R  G  N  I  L  L  R  :  G  Q  M  T  C  P  L  T  L  S  H  R  C  L  A  A  T  S   : R  Y  R  S  Q  M  E  S  *  T  W  E  P  G  R :   A  Y  G  C  V  S  T  V  I  L  L  P  H  A  E  L  *  S  P  L  M  E  C  E  P  L  K  *  N  V  K  E  D  N  E  L  P  T  P  I  L  L  K  R  A  H  V  I  L  *  T  L  S  G  C  D  V  F  L  V  H  F  C  L  Y  *  C  V  C  D  E  S  L  L  A  I  S  V  I  K  P  L  C  S  F  C  V  P  F  S  L  *  P  T  S  L  Y  M  E  V  I  V  P  A  L  H  L  F  M  E  Q  I  S  T  </first_frame>
            <second_frame>  F  T  S  T  I  T  F  G  P  I  V  E  K  K  I  V  L  E  T  A  A  N  A  F  S  F  V  F  I  F  S  I  V  R  W  N  C  K  A  I  F  G  S  G  Q  V  K  V  S  V  Y  S  F  E  N  N  N  *  *  P  F  *  F  N  G  F  P  K  M  G  S  K  N  C  N  S  S  S  S  K  A  R  L  S  S  C  Y  I  *   : D  Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C  T  V  E  T  Y  S  *  G :   A  R  *  H  A  R  S  H  *  V  I  D  V  W  L  Q  P  H  :  D  T  D  H  R  W  K  A  K  H  G  N  L  A   : G  H  M  V  V  *  A  P  *  F  C  Y  P  T  Q  N  C  D  H  P  *  W  N  V  S  R  *  S  E  M  L  K  K  T  M  S  Y  Q  R  L  S  Y  *  N  A  H  M  *  Y  Y  K  H  S  L  V  V  M  F  F  *  S  I  S  V  Y  T  D  V  C  V  M  K  A  S  W  P  F  L  L  *  N  H  Y  V  V  S  V  S  H  F  H  Y  D  Q  R  V  C  T  W  K  L  S  F  Q  R  C  I  F  L  W  S  R  L  A  P </second_frame>
            <third_frame>   S  L  A  L  L  L  L  V  Q  *  L  K  K  K  L  F  L  K  Q  Q  Q  M  L  S  L  S  S  S  S  L  V  S  F  G  G  I  A  K  P  F  S  A  P  V  R  L  K  C  Q  Y  T  P  L  R  T  T  I  N  N  P  S  D  S  M  A  S  P  K  W  A  Q  K  T  V  T  L  P  P  Q  R  R  G  C  H  L  V  T  S  K  :  I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : L  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S  A  P  W  K  H  T  L  E   : G  P  D  D  M  P  A  H  I  K  S  S  M  F  G  C  N  L  T :   I  P  I  T  D  G  K  L  N  M  G  T  W  Q  :  G  I  W  L  C  E  H  R  D  S  A  T  P  R  R  I  V  I  T  L  N  G  M  *  A  A  K  V  K  C  *  R  R  Q  *  A  T  N  A  Y  L  T  E  T  R  T  C  N  T  I  N  T  L  W  L  *  C  F  S  S  P  F  L  S  I  L  M  C  V  *  *  K  P  L  G  H  F  C  Y  K  T  T  M  *  F  L  C  P  I  F  I  M  T  N  E  F  V  H  G  S  Y  R  S  S  V  A  S  F  Y  G  A  D  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32100" stop="32336"/>
                    <exon start="34505" stop="34565"/>
                    <exon start="34686" stop="34780"/>
                    <exon start="34865" stop="34898"/>
                    <exon start="36058" stop="36112"/>
                    <exon start="36198" stop="36240"/>
                    <exon start="36620" stop="36691"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKKLFLKQQQMLSLSSSSLVSFGGIAKPFSAPVRLKCQYTPLRTTINNPSDSMASPKWAQKTVTLPPQRRGCHLVTSKIMKEINQEIAGFKCGLAHLFLQHTSASLTINENYDSDVREDTETFLSRVVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCNLTIPITDGKLNMGTWQGIWLCEHRDSATPRRIVITLNGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32075" e_stop="32336"/>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34686" e_stop="34780"/>
            <exon e_start="34865" e_stop="34898"/>
            <exon e_start="36058" e_stop="36112"/>
            <exon e_start="36198" e_stop="36412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32075" e_stop="32336" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.375">
            <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34686" e_stop="34780" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="34898" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36058" e_stop="36112" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="36198" e_stop="36412" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32075" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32083" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32087" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32100" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32105" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32130" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32143" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32200" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCACTATTACTTTTGGTCCAATAGTTGAAAAAAAAATTGTTCTTGAAACAGCAGCAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG : ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTGCACCGTGGAAACATACTCTTGAGG : GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC : GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAGGTACTTGTGCTACCTCCTTTCAGGTCGTTTGATTTGAGCATCGCTAGAAGCCTAGAACAATGAATTTTTCAAACGCTTTCACCTTCATGTTGGATTAAAAAAGCAGACAGTTAAAGTTGTTACATCTATTTTCATTACAAAGTTGGTCTAATCTATCCTTCAATCTCTTTTT</gDNA_template>
            <first_frame> S  T  I  T  F  G  P  I  V  E  K  K  I  V  L  E  T  A  A  N  A  F  S  F  V  F  I  F  S  I  V  R  W  N  C  K  A  I  F  G  S  G  Q  V  K  V  S  V  Y  S  F  E  N  N  N  *  *  P  F  *  F  N  G  F  P  K  M  G  S  K  N  C  N  S  S  S  S  K  A  R  L  S  S  C  Y  I  *   : D  Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C  T  V  E  T  Y  S  *  G :   A  R  *  H  A  R  S  H  *  V  I  D  V  W  L  Q  P  H  :  D  T  D  H  R  W  K  A  K  H  G  N  L  A  G  T  C  A  T  S  F  Q  V  V  *  F  E  H  R  *  K  P  R  T  M  N  F  S  N  A  F  T  F  M  L  D  *  K  S  R  Q  L  K  L  L  H  L  F  S  L  Q  S  W  S  N  L  S  F  N  L  F   </first_frame>
            <second_frame>  A  L  L  L  L  V  Q  *  L  K  K  K  L  F  L  K  Q  Q  Q  M  L  S  L  S  S  S  S  L  V  S  F  G  G  I  A  K  P  F  S  A  P  V  R  L  K  C  Q  Y  T  P  L  R  T  T  I  N  N  P  S  D  S  M  A  S  P  K  W  A  Q  K  T  V  T  L  P  P  Q  R  R  G  C  H  L  V  T  S  K  :  I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : L  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S  A  P  W  K  H  T  L  E   : G  P  D  D  M  P  A  H  I  K  S  S  M  F  G  C  N  L  T :   I  P  I  T  D  G  K  L  N  M  G  T  W  Q  V  L  V  L  P  P  F  R  S  F  D  L  S  I  A  R  S  L  E  Q  *  I  F  Q  T  L  S  P  S  C  W  I  K  K  A  D  S  *  S  C  Y  I  Y  F  H  Y  K  V  G  L  I  Y  P  S  I  S  F  </second_frame>
            <third_frame>   H  Y  Y  F  W  S  N  S  *  K  K  N  C  S  *  N  S  S  K  C  F  L  F  R  L  H  L  *  Y  R  S  V  E  L  Q  S  H  F  R  L  R  S  G  *  S  V  S  I  L  L  *  E  Q  Q  L  I  T  L  L  I  Q  W  L  P  Q  N  G  L  K  K  L  *  L  F  L  L  K  G  E  A  V  I  L  L  H  L  R :   L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  H  R  G  N  I  L  L  R  :  G  Q  M  T  C  P  L  T  L  S  H  R  C  L  A  A  T  S   : R  Y  R  S  Q  M  E  S  *  T  W  E  P  G  R  Y  L  C  Y  L  L  S  G  R  L  I  *  A  S  L  E  A  *  N  N  E  F  F  K  R  F  H  L  H  V  G  L  K  K  Q  T  V  K  V  V  T  S  I  F  I  T  K  L  V  *  S  I  L  Q  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32100" stop="32336"/>
                    <exon start="34505" stop="34565"/>
                    <exon start="34686" stop="34780"/>
                    <exon start="34865" stop="34898"/>
                    <exon start="36058" stop="36112"/>
                    <exon start="36198" stop="36303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKKLFLKQQQMLSLSSSSLVSFGGIAKPFSAPVRLKCQYTPLRTTINNPSDSMASPKWAQKTVTLPPQRRGCHLVTSKIMKEINQEIAGFKCGLAHLFLQHTSASLTINENYDSDVREDTETFLSRVVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCNLTIPITDGKLNMGTWQVLVLPPFRSFDLSIARSLEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32136" e_stop="32336"/>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34643" e_stop="34780"/>
            <exon e_start="34865" e_stop="34898"/>
            <exon e_start="36058" e_stop="36112"/>
            <exon e_start="36198" e_stop="36240"/>
            <exon e_start="36620" e_stop="36954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="0.970"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.520" acc_prob="0.839" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="32136" e_stop="32336" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="34643" e_stop="34780" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="34898" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34899" i_stop="36057" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36058" e_stop="36112" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36113" i_stop="36197" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36198" e_stop="36240" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.520" acc_prob="0.839">
            <gDNA_intron_boundary i_start="36241" i_stop="36619" i_length="379"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="36620" e_stop="36954" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32136" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34643" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32136" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34643" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32197" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34643" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434500" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34750" stop="34780"/>
              <exon start="34865" stop="34898"/>
              <exon start="36058" stop="36112"/>
              <exon start="36198" stop="36240"/>
              <exon start="36620" stop="36954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36213" stop="36240"/>
              <exon start="36620" stop="36917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG : ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTGCACCGTGGAAACATACTCTTGAGG : GGCCAGATGACATGCCCGCTCACATTAAGTCATCGATGTTTGGCTGCAACCTCAC : GATACCGATCACAGATGGAAAGCTAAACATGGGAACCTGGCAG : GGCATATGGTTGTGTGAGCACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTGGTTGTGATGTTTTTCTAGTCCATTTCTGTCTATACTGATGTGTGTGTGATGAAAGCCTCTTGGCCATTTCTGTTATAAAACCACTATGTAGTTTCTGTGTCCCATTTTCATTATGACCAACGAGTTTGTACATGGAAGTTATCGTTCCAGCGTTGCATCTTTTTATGGAGCAGA</gDNA_template>
            <first_frame> L  S  L  S  S  S  S  L  V  S  F  G  G  I  A  K  P  F  S  A  P  V  R  L  K  C  Q  Y  T  P  L  R  T  T  I  N  N  P  S  D  S  M  A  S  P  K  W  A  Q  K  T  V  T  L  P  P  Q  R  R  G  C  H  L  V  T  S  K  :  I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : Q  F  Y  Y  D  *  V  W  L  A  V  C  L  T  S  A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C  T  V  E  T  Y  S  *  G :   A  R  *  H  A  R  S  H  *  V  I  D  V  W  L  Q  P  H  :  D  T  D  H  R  W  K  A  K  H  G  N  L  A   : G  H  M  V  V  *  A  P  *  F  C  Y  P  T  Q  N  C  D  H  P  *  W  N  V  S  R  *  S  E  M  L  K  K  T  M  S  Y  Q  R  L  S  Y  *  N  A  H  M  *  Y  Y  K  H  S  L  V  V  M  F  F  *  S  I  S  V  Y  T  D  V  C  V  M  K  A  S  W  P  F  L  L  *  N  H  Y  V  V  S  V  S  H  F  H  Y  D  Q  R  V  C  T  W  K  L  S  F  Q  R  C  I  F  L  W  S  R </first_frame>
            <second_frame>  F  L  F  R  L  H  L  *  Y  R  S  V  E  L  Q  S  H  F  R  L  R  S  G  *  S  V  S  I  L  L  *  E  Q  Q  L  I  T  L  L  I  Q  W  L  P  Q  N  G  L  K  K  L  *  L  F  L  L  K  G  E  A  V  I  L  L  H  L  R :   L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  N  S  T  M  T  E  Y  G  *  L  C  V  *  P  V  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S  A  P  W  K  H  T  L  E   : G  P  D  D  M  P  A  H  I  K  S  S  M  F  G  C  N  L  T :   I  P  I  T  D  G  K  L  N  M  G  T  W  Q  :  G  I  W  L  C  E  H  R  D  S  A  T  P  R  R  I  V  I  T  L  N  G  M  *  A  A  K  V  K  C  *  R  R  Q  *  A  T  N  A  Y  L  T  E  T  R  T  C  N  T  I  N  T  L  W  L  *  C  F  S  S  P  F  L  S  I  L  M  C  V  *  *  K  P  L  G  H  F  C  Y  K  T  T  M  *  F  L  C  P  I  F  I  M  T  N  E  F  V  H  G  S  Y  R  S  S  V  A  S  F  Y  G  A   </second_frame>
            <third_frame>   F  S  F  V  F  I  F  S  I  V  R  W  N  C  K  A  I  F  G  S  G  Q  V  K  V  S  V  Y  S  F  E  N  N  N  *  *  P  F  *  F  N  G  F  P  K  M  G  S  K  N  C  N  S  S  S  S  K  A  R  L  S  S  C  Y  I  *   : D  Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   I  L  L  *  L  S  M  V  S  C  V  F  N  Q  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  H  R  G  N  I  L  L  R  :  G  Q  M  T  C  P  L  T  L  S  H  R  C  L  A  A  T  S   : R  Y  R  S  Q  M  E  S  *  T  W  E  P  G  R :   A  Y  G  C  V  S  T  V  I  L  L  P  H  A  E  L  *  S  P  L  M  E  C  E  P  L  K  *  N  V  K  E  D  N  E  L  P  T  P  I  L  L  K  R  A  H  V  I  L  *  T  L  S  G  C  D  V  F  L  V  H  F  C  L  Y  *  C  V  C  D  E  S  L  L  A  I  S  V  I  K  P  L  C  S  F  C  V  P  F  S  L  *  P  T  S  L  Y  M  E  V  I  V  P  A  L  H  L  F  M  E  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34682" stop="34780"/>
                    <exon start="34865" stop="34898"/>
                    <exon start="36058" stop="36112"/>
                    <exon start="36198" stop="36240"/>
                    <exon start="36620" stop="36691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVQHTSASLTINENYDSDVREDTETFLSRVVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCNLTIPITDGKLNMGTWQGIWLCEHRDSATPRRIVITLNGM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32136" stop="32336"/>
                    <exon start="34505" stop="34565"/>
                    <exon start="34643" stop="34659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLSSSSLVSFGGIAKPFSAPVRLKCQYTPLRTTINNPSDSMASPKWAQKTVTLPPQRRGCHLVTSKIMKEINQEIAGFKCGLAHLFQFYYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="32130" e_stop="32336"/>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34686" e_stop="34780"/>
            <exon e_start="34865" e_stop="34874"/>
            <exon e_start="36638" e_stop="36780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32130" e_stop="32336" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32337" i_stop="34504" i_length="2168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.375">
            <gDNA_intron_boundary i_start="34566" i_stop="34685" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34686" e_stop="34780" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="34874" e_length="10"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34875" i_stop="36637" i_length="1763"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36638" e_stop="36780" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32130" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32150" stop="32336"/>
              <exon start="34505" stop="34565"/>
              <exon start="34686" stop="34780"/>
              <exon start="34865" stop="34874"/>
              <exon start="36638" stop="36780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATGCTTTCTCTTTCGTCTTCATCTTTAGTATCGTTCGGTGGAATTGCAAAGCCATTTTCGGCTCCGGTCAGGTTAAAGTGTCAGTATACTCCTTTGAGAACAACAATTAATAACCCTTCTGATTCAATGGCTTCCCCAAAATGGGCTCAAAAAACTGTAACTCTTCCTCCTCAAAGGCGAGGCTGTCATCTTGTTACATCTAAG : ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : TGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTG : CACCGTGATTCTGCTACCCCACGCAGAATTGTGATCACCCTTAATGGAATGTGAGCCGCTAAAGTGAAATGTTAAAGAAGACAATGAGCTACCAACGCCTATCTTACTGAAACGCGCACATGTAATACTATAAACACTCTCTG</gDNA_template>
            <first_frame> Q  M  L  S  L  S  S  S  S  L  V  S  F  G  G  I  A  K  P  F  S  A  P  V  R  L  K  C  Q  Y  T  P  L  R  T  T  I  N  N  P  S  D  S  M  A  S  P  K  W  A  Q  K  T  V  T  L  P  P  Q  R  R  G  C  H  L  V  T  S  K  :  I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : L  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S   : A  P  *  F  C  Y  P  T  Q  N  C  D  H  P  *  W  N  V  S  R  *  S  E  M  L  K  K  T  M  S  Y  Q  R  L  S  Y  *  N  A  H  M  *  Y  Y  K  H  S  L </first_frame>
            <second_frame>  K  C  F  L  F  R  L  H  L  *  Y  R  S  V  E  L  Q  S  H  F  R  L  R  S  G  *  S  V  S  I  L  L  *  E  Q  Q  L  I  T  L  L  I  Q  W  L  P  Q  N  G  L  K  K  L  *  L  F  L  L  K  G  E  A  V  I  L  L  H  L  R :   L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  :  H  R  D  S  A  T  P  R  R  I  V  I  T  L  N  G  M  *  A  A  K  V  K  C  *  R  R  Q  *  A  T  N  A  Y  L  T  E  T  R  T  C  N  T  I  N  T  L   </second_frame>
            <third_frame>   N  A  F  S  F  V  F  I  F  S  I  V  R  W  N  C  K  A  I  F  G  S  G  Q  V  K  V  S  V  Y  S  F  E  N  N  N  *  *  P  F  *  F  N  G  F  P  K  M  G  S  K  N  C  N  S  S  S  S  K  A  R  L  S  S  C  Y  I  *   : D  Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C :   T  V  I  L  L  P  H  A  E  L  *  S  P  L  M  E  C  E  P  L  K  *  N  V  K  E  D  N  E  L  P  T  P  I  L  L  K  R  A  H  V  I  L  *  T  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32130" stop="32336"/>
                    <exon start="34505" stop="34565"/>
                    <exon start="34686" stop="34780"/>
                    <exon start="34865" stop="34874"/>
                    <exon start="36638" stop="36645"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMLSLSSSSLVSFGGIAKPFSAPVRLKCQYTPLRTTINNPSDSMASPKWAQKTVTLPPQRRGCHLVTSKIMKEINQEIAGFKCGLAHLFLQHTSASLTINENYDSDVREDTETFLSRVVPEGTSAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="34505" e_stop="34565"/>
            <exon e_start="34643" e_stop="34780"/>
            <exon e_start="34865" e_stop="35162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.746" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34505" e_stop="34565" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34566" i_stop="34642" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34643" e_stop="34780" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.746">
            <gDNA_intron_boundary i_start="34781" i_stop="34864" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34865" e_stop="35162" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34505" stop="34565"/>
              <exon start="34643" stop="34780"/>
              <exon start="34865" stop="35162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGAAGGAAATTAATCAAGAGATAGCAGGCTTCAAATGTGGCCTTGCTCATCTTTTTC : AATTCTACTATGACTGAGTATGGTTAGCTGTGTGTTTAACCAGTGCAGCATACAAGTGCTTCTTTAACTATAAATGAAAATTACGACTCAGATGTTCGAGAAGATACAGAGACATTTCTTAGTAGGGTTGTCCCAGAG : GGGACTTCTGCACCGTGGAAACATACTCTTGAGGGTAAGTGTGTAACGTAATCCCTGTCATCTGTACTGCTGTTTCTTTTCTTTTTTGGTTAATCAGGTATTTGACTGGATTTTATTCCAGGGGTGGCAATTTAATGGGTTGCTGTAGGTTTGTGGGATGAAAACTATATGAGCCAAAAACCTATCAATTTTTGCCTGAGCTTGGGGAAACTCAAAATCTTGAGGCTGAGCTTGACTCTCTATTAAGACTTAAGAGCTCGTGCTCGGGCCTGAGATGCTTGAAAACCGATGTCCCAAC</gDNA_template>
            <first_frame> I  M  K  E  I  N  Q  E  I  A  G  F  K  C  G  L  A  H  L  F   : Q  F  Y  Y  D  *  V  W  L  A  V  C  L  T  S  A  A  Y  K  C  F  F  N  Y  K  *  K  L  R  L  R  C  S  R  R  Y  R  D  I  S  *  *  G  C  P  R   : G  D  F  C  T  V  E  T  Y  S  *  G  *  V  C  N  V  I  P  V  I  C  T  A  V  S  F  L  F  W  L  I  R  Y  L  T  G  F  Y  S  R  G  G  N  L  M  G  C  C  R  F  V  G  *  K  L  Y  E  P  K  T  Y  Q  F  L  P  E  L  G  E  T  Q  N  L  E  A  E  L  D  S  L  L  R  L  K  S  S  C  S  G  L  R  C  L  K  T  D  V  P   </first_frame>
            <second_frame>  L  *  R  K  L  I  K  R  *  Q  A  S  N  V  A  L  L  I  F  F  :  N  S  T  M  T  E  Y  G  *  L  C  V  *  P  V  Q  H  T  S  A  S  L  T  I  N  E  N  Y  D  S  D  V  R  E  D  T  E  T  F  L  S  R  V  V  P  E  :  G  T  S  A  P  W  K  H  T  L  E  G  K  C  V  T  *  S  L  S  S  V  L  L  F  L  F  F  F  G  *  S  G  I  *  L  D  F  I  P  G  V  A  I  *  W  V  A  V  G  L  W  D  E  N  Y  M  S  Q  K  P  I  N  F  C  L  S  L  G  K  L  K  I  L  R  L  S  L  T  L  Y  *  D  L  R  A  R  A  R  A  *  D  A  *  K  P  M  S  Q  </second_frame>
            <third_frame>   Y  E  G  N  *  S  R  D  S  R  L  Q  M  W  P  C  S  S  F  S :   I  L  L  *  L  S  M  V  S  C  V  F  N  Q  C  S  I  Q  V  L  L  *  L  *  M  K  I  T  T  Q  M  F  E  K  I  Q  R  H  F  L  V  G  L  S  Q  R :   G  L  L  H  R  G  N  I  L  L  R  V  S  V  *  R  N  P  C  H  L  Y  C  C  F  F  S  F  L  V  N  Q  V  F  D  W  I  L  F  Q  G  W  Q  F  N  G  L  L  *  V  C  G  M  K  T  I  *  A  K  N  L  S  I  F  A  *  A  W  G  N  S  K  S  *  G  *  A  *  L  S  I  K  T  *  E  L  V  L  G  P  E  M  L  E  N  R  C  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0057G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40788" PGL_stop="37245"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40788" e_stop="40360"/>
            <exon e_start="39184" e_stop="38152"/>
            <exon e_start="37919" e_stop="37915"/>
            <exon e_start="37825" e_stop="37245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.681" e_score="0.973"/>
          <exon-intron don_prob="0.157" acc_prob="0.928" e_score="0.400"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40788" e_stop="40360" e_length="429"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.790">
            <gDNA_intron_boundary i_start="40359" i_stop="39185" i_length="1175"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="39184" e_stop="38152" e_length="1033"/>
          </exon>
          <intron i_serial="2" don_prob="0.817" acc_prob="0.681">
            <gDNA_intron_boundary i_start="38151" i_stop="37920" i_length="232"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="37919" e_stop="37915" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.157" acc_prob="0.928">
            <gDNA_intron_boundary i_start="37914" i_stop="37826" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.942">
            <gDNA_exon_boundary e_start="37825" e_stop="37245" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40788" stop="40360"/>
              <exon start="39184" stop="39161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40764" stop="40360"/>
              <exon start="39184" stop="38944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40758" stop="40360"/>
              <exon start="39184" stop="39040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40734" stop="40360"/>
              <exon start="39184" stop="38942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40550" stop="40360"/>
              <exon start="39184" stop="38645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38990" stop="38546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38869" stop="38253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38869" stop="38338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38821" stop="38152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38733" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38476" stop="38152"/>
              <exon start="37919" stop="37915"/>
              <exon start="37825" stop="37711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38330" stop="38152"/>
              <exon start="37919" stop="37915"/>
              <exon start="37825" stop="37479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37638" stop="37245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGTCTCTGTGTCTCTTCCTGTAGAGAGAAGCAAAAAAAAGAAATAGTATCAGTTCTACTAGTATAGTACTAGTAGCATCAGCAGTACATACACTCTTCTCCATTTTATTGACCAAAAATGTTGAATTTGTCTGCATCTGTTGAATGAGCAAAAAGGATTTTGTTGTTTGTGTGTTTAACAACCATTTTTTTTTTGAGTATTTTTGAGTTTTGAGTGTGTATGTGTGTTTTAGTGTGGAGATGAAAGAGTAAGTGTTGAAAAGAAGAAGAAAACAAAGATTTGTTTGTGTTTAAGCAGTTGGGTGAAAGTGTACTGAAGTGAAGTTGATTAAAAAAGGAGTTTGATTTAGCTGAAGTTTGACAGTAGAAATGGGGTCGGAGCAGAATAGATTTCCGCAGCAACAAGGACCGCCACTTCCTTCTCGG : CATAAACGATGGGGAGGATGTTTGGGAAGATTGTCTTGTTTTGGAAGACAAAAAGGTGGAAAGCGTATAGTGCCTTCATCTCGTATTCCTGAGGCCAATTCAATGCCAAATCAGCAGAATGTTCCCCAAGCTGGTGGGCTGAATAATCAGACGGCAGCTCTTTTAGCTCCACCATCTTCACCAGCATCATTTTCGAATTCAGCACTCCCTTCAACAGCTCAATCACCAAGCTGTTTTTTATCTAGCAATTCACCAGGAGGTCCTTCATCAGCTATGTTCGCCACTGGTCCATATGCTCATGAGACCCAGTTGGTATCTCCTCCCGTGTTCTCTAACTTCACCACTGAGCCATCTACTGCTCCTTTCACACCTCCGCCTGAGTTGGCCCACTTAACTACTCCCTCTTCACCAGATGTGCCTTTTGCTCGGTTCCTCTCCTCTTCTGTGAAAGTTAAAACTAACACTGGTGCCAATGATTTTCAAACAACATACTCTCTTTATCCAGGAAGTCCTGCTAGTACTCTCAGATCCCCTGTTTCGAGGGGACCAGGTGAAAGGGAACTTCCTCAGTTGGATCCTTCTATCCCTTCATCTGAGATCAAGTATCCAGGCCCTGATTCAAGCACCTCCAAGCTGACTCAAGATTCAAATTTCTTCTGTCCAGCTACATTTGCCCAATATTACATTGACCACTCTTTATTTCCTCATTCTGGTGGAAGGCTGAGCGTTTCCAAAGAAACTGATGCTTATGCAACTAATAATGGGAATGGCCAGCAGAGTTGGCAGAACAAACCATCTAAACAAGATGCAGAGGAAGTTGAAGCGTATAGAGCATCCTTTGGGTTCAGTGCTGATGAGATTGTTAGTACGACGCAATATGTGGAAATTTCTGATGTCGCATTAGATGAATCCTTTAGCATGACTCCTTTTACTAAGCCCAGAGAAGAGGAAATCATATTAACTATGTCAACAGCTGAGGGAACAAAAGGAGGGAATATCTCTAATATGGCATCTCCTCTGCTGTGCAAACCAG : GCTAA : GACTAAAACTGACAAGCTTCCGTCTTCTACACAGATCATACGTCTCCAAAGCAAATTGAACCTGCCAATTATGCTATGAGTGATGATGAAGGTATCTTCTCCAAATTGGGAACTTTAAGATTAAGTCGGAAACATGACTATGGTTTGGCAAGCTCCGATGCAGAGATAGACTACAGGAGAGGAAGAAGTTTGAGAGAAGCAAAAGGCAACATCGCATGGTAGCACTAATATTTAGAATATTATCTAGTCCTCCTGTTGGCTGAATTGCATGGTTCTCTTCTTTTGCTTTCGTTGGGGGTCTTCTACTTTCGCAGGTGATCTAACCTCACTCACGAAAACTCCCTACTGCATCCTCGTTTATTCTGCTTTTTTATTCAAGAATGTATTGTCTGTATATCTTAAGGTTCTCTCGAGTTATGTATGTCAAAAGTCGTAGCAATATACTTTCAGCCATTAATGTCATTAGGAGTGGGAATGGATCCTGGAACTTTTTGTACTGTGGATTGTGTATGCTTGTTTCGGAATGTCTTAGGCTTGAAGTCTTTGGAAATGTATCTTATTGAATATGCATTTCAATGAAG</gDNA_template>
            <first_frame> F  E  S  L  C  L  F  L  *  R  E  A  K  K  R  N  S  I  S  S  T  S  I  V  L  V  A  S  A  V  H  T  L  F  S  I  L  L  T  K  N  V  E  F  V  C  I  C  *  M  S  K  K  D  F  V  V  C  V  F  N  N  H  F  F  F  E  Y  F  *  V  L  S  V  Y  V  C  F  S  V  E  M  K  E  *  V  L  K  R  R  R  K  Q  R  F  V  C  V  *  A  V  G  *  K  C  T  E  V  K  L  I  K  K  G  V  *  F  S  *  S  L  T  V  E  M  G  S  E  Q  N  R  F  P  Q  Q  Q  G  P  P  L  P  S  R  :  H  K  R  W  G  G  C  L  G  R  L  S  C  F  G  R  Q  K  G  G  K  R  I  V  P  S  S  R  I  P  E  A  N  S  M  P  N  Q  Q  N  V  P  Q  A  G  G  L  N  N  Q  T  A  A  L  L  A  P  P  S  S  P  A  S  F  S  N  S  A  L  P  S  T  A  Q  S  P  S  C  F  L  S  S  N  S  P  G  G  P  S  S  A  M  F  A  T  G  P  Y  A  H  E  T  Q  L  V  S  P  P  V  F  S  N  F  T  T  E  P  S  T  A  P  F  T  P  P  P  E  L  A  H  L  T  T  P  S  S  P  D  V  P  F  A  R  F  L  S  S  S  V  K  V  K  T  N  T  G  A  N  D  F  Q  T  T  Y  S  L  Y  P  G  S  P  A  S  T  L  R  S  P  V  S  R  G  P  G  E  R  E  L  P  Q  L  D  P  S  I  P  S  S  E  I  K  Y  P  G  P  D  S  S  T  S  K  L  T  Q  D  S  N  F  F  C  P  A  T  F  A  Q  Y  Y  I  D  H  S  L  F  P  H  S  G  G  R  L  S  V  S  K  E  T  D  A  Y  A  T  N  N  G  N  G  Q  Q  S  W  Q  N  K  P  S  K  Q  D  A  E  E  V  E  A  Y  R  A  S  F  G  F  S  A  D  E  I  V  S  T  T  Q  Y  V  E  I  S  D  V  A  L  D  E  S  F  S  M  T  P  F  T  K  P  R  E  E  E  I  I  L  T  M  S  T  A  E  G  T  K  G  G  N  I  S  N  M  A  S  P  L  L  C  K  P   : G  *  :  D  *  N  *  Q  A  S  V  F  Y  T  D  H  T  S  P  K  Q  I  E  P  A  N  Y  A  M  S  D  D  E  G  I  F  S  K  L  G  T  L  R  L  S  R  K  H  D  Y  G  L  A  S  S  D  A  E  I  D  Y  R  R  G  R  S  L  R  E  A  K  G  N  I  A  W  *  H  *  Y  L  E  Y  Y  L  V  L  L  L  A  E  L  H  G  S  L  L  L  L  S  L  G  V  F  Y  F  R  R  *  S  N  L  T  H  E  N  S  L  L  H  P  R  L  F  C  F  F  I  Q  E  C  I  V  C  I  S  *  G  S  L  E  L  C  M  S  K  V  V  A  I  Y  F  Q  P  L  M  S  L  G  V  G  M  D  P  G  T  F  C  T  V  D  C  V  C  L  F  R  N  V  L  G  L  K  S  L  E  M  Y  L  I  E  Y  A  F  Q  *   </first_frame>
            <second_frame>  L  S  L  C  V  S  S  C  R  E  K  Q  K  K  E  I  V  S  V  L  L  V  *  Y  *  *  H  Q  Q  Y  I  H  S  S  P  F  Y  *  P  K  M  L  N  L  S  A  S  V  E  *  A  K  R  I  L  L  F  V  C  L  T  T  I  F  F  L  S  I  F  E  F  *  V  C  M  C  V  L  V  W  R  *  K  S  K  C  *  K  E  E  E  N  K  D  L  F  V  F  K  Q  L  G  E  S  V  L  K  *  S  *  L  K  K  E  F  D  L  A  E  V  *  Q  *  K  W  G  R  S  R  I  D  F  R  S  N  K  D  R  H  F  L  L  G :   I  N  D  G  E  D  V  W  E  D  C  L  V  L  E  D  K  K  V  E  S  V  *  C  L  H  L  V  F  L  R  P  I  Q  C  Q  I  S  R  M  F  P  K  L  V  G  *  I  I  R  R  Q  L  F  *  L  H  H  L  H  Q  H  H  F  R  I  Q  H  S  L  Q  Q  L  N  H  Q  A  V  F  Y  L  A  I  H  Q  E  V  L  H  Q  L  C  S  P  L  V  H  M  L  M  R  P  S  W  Y  L  L  P  C  S  L  T  S  P  L  S  H  L  L  L  L  S  H  L  R  L  S  W  P  T  *  L  L  P  L  H  Q  M  C  L  L  L  G  S  S  P  L  L  *  K  L  K  L  T  L  V  P  M  I  F  K  Q  H  T  L  F  I  Q  E  V  L  L  V  L  S  D  P  L  F  R  G  D  Q  V  K  G  N  F  L  S  W  I  L  L  S  L  H  L  R  S  S  I  Q  A  L  I  Q  A  P  P  S  *  L  K  I  Q  I  S  S  V  Q  L  H  L  P  N  I  T  L  T  T  L  Y  F  L  I  L  V  E  G  *  A  F  P  K  K  L  M  L  M  Q  L  I  M  G  M  A  S  R  V  G  R  T  N  H  L  N  K  M  Q  R  K  L  K  R  I  E  H  P  L  G  S  V  L  M  R  L  L  V  R  R  N  M  W  K  F  L  M  S  H  *  M  N  P  L  A  *  L  L  L  L  S  P  E  K  R  K  S  Y  *  L  C  Q  Q  L  R  E  Q  K  E  G  I  S  L  I  W  H  L  L  C  C  A  N  Q  :  A  K :   T  K  T  D  K  L  P  S  S  T  Q  I  I  R  L  Q  S  K  L  N  L  P  I  M  L  *  V  M  M  K  V  S  S  P  N  W  E  L  *  D  *  V  G  N  M  T  M  V  W  Q  A  P  M  Q  R  *  T  T  G  E  E  E  V  *  E  K  Q  K  A  T  S  H  G  S  T  N  I  *  N  I  I  *  S  S  C  W  L  N  C  M  V  L  F  F  C  F  R  W  G  S  S  T  F  A  G  D  L  T  S  L  T  K  T  P  Y  C  I  L  V  Y  S  A  F  L  F  K  N  V  L  S  V  Y  L  K  V  L  S  S  Y  V  C  Q  K  S  *  Q  Y  T  F  S  H  *  C  H  *  E  W  E  W  I  L  E  L  F  V  L  W  I  V  Y  A  C  F  G  M  S  *  A  *  S  L  W  K  C  I  L  L  N  M  H  F  N  E  </second_frame>
            <third_frame>   *  V  S  V  S  L  P  V  E  R  S  K  K  K  K  *  Y  Q  F  Y  *  Y  S  T  S  S  I  S  S  T  Y  T  L  L  H  F  I  D  Q  K  C  *  I  C  L  H  L  L  N  E  Q  K  G  F  C  C  L  C  V  *  Q  P  F  F  F  *  V  F  L  S  F  E  C  V  C  V  F  *  C  G  D  E  R  V  S  V  E  K  K  K  K  T  K  I  C  L  C  L  S  S  W  V  K  V  Y  *  S  E  V  D  *  K  R  S  L  I  *  L  K  F  D  S  R  N  G  V  G  A  E  *  I  S  A  A  T  R  T  A  T  S  F  S   : A  *  T  M  G  R  M  F  G  K  I  V  L  F  W  K  T  K  R  W  K  A  Y  S  A  F  I  S  Y  S  *  G  Q  F  N  A  K  S  A  E  C  S  P  S  W  W  A  E  *  S  D  G  S  S  F  S  S  T  I  F  T  S  I  I  F  E  F  S  T  P  F  N  S  S  I  T  K  L  F  F  I  *  Q  F  T  R  R  S  F  I  S  Y  V  R  H  W  S  I  C  S  *  D  P  V  G  I  S  S  R  V  L  *  L  H  H  *  A  I  Y  C  S  F  H  T  S  A  *  V  G  P  L  N  Y  S  L  F  T  R  C  A  F  C  S  V  P  L  L  F  C  E  S  *  N  *  H  W  C  Q  *  F  S  N  N  I  L  S  L  S  R  K  S  C  *  Y  S  Q  I  P  C  F  E  G  T  R  *  K  G  T  S  S  V  G  S  F  Y  P  F  I  *  D  Q  V  S  R  P  *  F  K  H  L  Q  A  D  S  R  F  K  F  L  L  S  S  Y  I  C  P  I  L  H  *  P  L  F  I  S  S  F  W  W  K  A  E  R  F  Q  R  N  *  C  L  C  N  *  *  W  E  W  P  A  E  L  A  E  Q  T  I  *  T  R  C  R  G  S  *  S  V  *  S  I  L  W  V  Q  C  *  *  D  C  *  Y  D  A  I  C  G  N  F  *  C  R  I  R  *  I  L  *  H  D  S  F  Y  *  A  Q  R  R  G  N  H  I  N  Y  V  N  S  *  G  N  K  R  R  E  Y  L  *  Y  G  I  S  S  A  V  Q  T  R :   L   : R  L  K  L  T  S  F  R  L  L  H  R  S  Y  V  S  K  A  N  *  T  C  Q  L  C  Y  E  *  *  *  R  Y  L  L  Q  I  G  N  F  K  I  K  S  E  T  *  L  W  F  G  K  L  R  C  R  D  R  L  Q  E  R  K  K  F  E  R  S  K  R  Q  H  R  M  V  A  L  I  F  R  I  L  S  S  P  P  V  G  *  I  A  W  F  S  S  F  A  F  V  G  G  L  L  L  S  Q  V  I  *  P  H  S  R  K  L  P  T  A  S  S  F  I  L  L  F  Y  S  R  M  Y  C  L  Y  I  L  R  F  S  R  V  M  Y  V  K  S  R  S  N  I  L  S  A  I  N  V  I  R  S  G  N  G  S  W  N  F  L  Y  C  G  L  C  M  L  V  S  E  C  L  R  L  E  V  F  G  N  V  S  Y  *  I  C  I  S  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40431" stop="40360"/>
                    <exon start="39184" stop="38152"/>
                    <exon start="37919" stop="37915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTVEMGSEQNRFPQQQGPPLPSRHKRWGGCLGRLSCFGRQKGGKRIVPSSRIPEANSMPNQQNVPQAGGLNNQTAALLAPPSSPASFSNSALPSTAQSPSCFLSSNSPGGPSSAMFATGPYAHETQLVSPPVFSNFTTEPSTAPFTPPPELAHLTTPSSPDVPFARFLSSSVKVKTNTGANDFQTTYSLYPGSPASTLRSPVSRGPGERELPQLDPSIPSSEIKYPGPDSSTSKLTQDSNFFCPATFAQYYIDHSLFPHSGGRLSVSKETDAYATNNGNGQQSWQNKPSKQDAEEVEAYRASFGFSADEIVSTTQYVEISDVALDESFSMTPFTKPREEEIILTMSTAEGTKGGNISNMASPLLCKPG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37502" stop="37263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSRKLPTASSFILLFYSRMYCLYILRFSRVMYVKSRSNILSAINVIRSGNGSWNFLYCGLCMLVSECLRLEVFGNVSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37813" stop="37604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QASVFYTDHTSPKQIEPANYAMSDDEGIFSKLGTLRLSRKHDYGLASSDAEIDYRRGRSLREAKGNIAW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48301" PGL_stop="44166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48301" e_stop="47810"/>
            <exon e_start="46811" e_stop="46627"/>
            <exon e_start="46038" e_stop="45838"/>
            <exon e_start="45016" e_stop="44855"/>
            <exon e_start="44738" e_stop="44166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.505" e_score="0.995"/>
          <exon-intron don_prob="0.582" acc_prob="0.335" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="48301" e_stop="47810" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.991">
            <gDNA_intron_boundary i_start="47809" i_stop="46812" i_length="998"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46811" e_stop="46627" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="46626" i_stop="46039" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="46038" e_stop="45838" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.505">
            <gDNA_intron_boundary i_start="45837" i_stop="45017" i_length="821"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45016" e_stop="44855" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.582" acc_prob="0.335">
            <gDNA_intron_boundary i_start="44854" i_stop="44739" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44738" e_stop="44166" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48301" stop="47882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48294" stop="47810"/>
              <exon start="46811" stop="46627"/>
              <exon start="46038" stop="46001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48210" stop="47810"/>
              <exon start="46811" stop="46627"/>
              <exon start="46038" stop="45869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46664" stop="46627"/>
              <exon start="46038" stop="45838"/>
              <exon start="45016" stop="44855"/>
              <exon start="44738" stop="44462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45940" stop="45838"/>
              <exon start="45016" stop="44855"/>
              <exon start="44738" stop="44200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45896" stop="45838"/>
              <exon start="45016" stop="44855"/>
              <exon start="44738" stop="44347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44993" stop="44855"/>
              <exon start="44738" stop="44198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44917" stop="44855"/>
              <exon start="44738" stop="44438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44551" stop="44166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTCTTTCTCTCTCTTCAAATTCCATTTTTTTTTTTTCAGATCTTCACTTCCCACGCAAAGGAGAAAAACAACACATCCCACATGCTCCATTTTCTCTCTCTTGTTTCTCTCTCTACAAAATAAAGCAAAGTGTTATGCTTTTCAGTAGTATCACAAAAATATAAATCTGAATCTACTTAATTGGGCTCATTCGTTATTGTAGATCTGCAAAATTGTGTTGATATTTGTGTTATATATTGTTTAAGAAAAAAAAAAATCCTGCCCCTCTCTGTTAAACGAGTTGGGTAGGTGATTTGGTTTTGCTATTTTGGATTATCAATAATTGTTGTTATAATATATATAGTTGTTATTGTTAAGTATGGAGAGCGAGAAGAAATCGTCTCATGTATCGGATATGGGAGCATGGGCGATGAATGTTGTTAGTTCGGTGGGAATTATTATGGCTAATAAGCAGCTTATGTCGGCCAATGGTTATGCATTCACTTTTG : CTACAACATTGACTGGGTTCCACTTTGCTGTGACTGCACTTGTTGGGATGGTGTCAAATGCCACAGGGCTTTCCTCATCAAAGCATGTACCTTTGTGGGAACTTATCTGGTTCTCAGTTGTTGCAAACATGTCTATCACAGGGATGAACTTAAGTCTCATGCTCAATTCAGTCGGATTTTACCAA : ATCTCAAAGTTGAGCATGATTCCAGTGGTTTGCATTATGGAATGGGTCCTTCATAATAAACGTTACTCGAAGGAGGTTAAAATGTCTGTTGTGGTTGTCGTTATCGGCGTGGGTGTTTGCACAGTAACTGATGTCAAGGTTAACGCCAAAGGTTTTATTTGTGCTTGTGTTGCAGTTCTGTCAACATCATTGCAACAGATT : TCAATAGGCTCTTTGCAGAAAAAGTACTCAATTGGATCCTTTGAATTATTGAGTAAAACTGCTCCGATTCAAGCTTGCTCCCTCCTTGTGCTGGGTCCTTTTTGCGACTACTATCTTAGTGGAAATCTATTACTAGACTACAAGTATTCTTATGGTGCCATT : TTCTTTATACTCCTGTCGTGTTCATTAGCTGTGTTCTGCAATGTGAGTCAGTATCTCTGCATCGGGCGATTCTCTGCAGTTTCCTTCCAGGTTCTAGGCCACATGAAGACCGTGTGTGTCCTGACTTTAGGCTGGGTGCTCTTTGAATCTGCGTTGACTTTTAAGAACATAATGGGAATGCTCGTTGCAATTGCGGGCATGGTGATCTATAGTTGGGCCGTGGAGGTCGAAAAACAAACCAACACCAAGAGTCCACACGCTTCCAAAAACAGCTTGACAGAAGAAGAGCTGAAATTATTGAAGGAGGGAATGGAGAAGGCCGACGTCGAAGTCGGTCAGTCCAAGGCCTGAAATTTTTGAGGTCTCTTATTTAGTAGCCATCATCACATATTATAGCTTCTTTTGGATCAAATTTGCATGTAGTTTATTATTTTTGTTGCATTATTTATTGGACATCCTTCCATTTGGTCCCAATTTGGTGACCTTGTCTTGTTTTTTTTCCTTCTTAATAGTTACTGAATGTTTTGTTCTTTGTCCAAGTCTACCACTACCAGGGTTCTTTTATACCATTTT</gDNA_template>
            <first_frame> S  L  L  S  L  S  S  N  S  I  F  F  F  S  D  L  H  F  P  R  K  G  E  K  Q  H  I  P  H  A  P  F  S  L  S  C  F  S  L  Y  K  I  K  Q  S  V  M  L  F  S  S  I  T  K  I  *  I  *  I  Y  L  I  G  L  I  R  Y  C  R  S  A  K  L  C  *  Y  L  C  Y  I  L  F  K  K  K  K  N  P  A  P  L  C  *  T  S  W  V  G  D  L  V  L  L  F  W  I  I  N  N  C  C  Y  N  I  Y  S  C  Y  C  *  V  W  R  A  R  R  N  R  L  M  Y  R  I  W  E  H  G  R  *  M  L  L  V  R  W  E  L  L  W  L  I  S  S  L  C  R  P  M  V  M  H  S  L  L  :  L  Q  H  *  L  G  S  T  L  L  *  L  H  L  L  G  W  C  Q  M  P  Q  G  F  P  H  Q  S  M  Y  L  C  G  N  L  S  G  S  Q  L  L  Q  T  C  L  S  Q  G  *  T  *  V  S  C  S  I  Q  S  D  F  T  K :   S  Q  S  *  A  *  F  Q  W  F  A  L  W  N  G  S  F  I  I  N  V  T  R  R  R  L  K  C  L  L  W  L  S  L  S  A  W  V  F  A  Q  *  L  M  S  R  L  T  P  K  V  L  F  V  L  V  L  Q  F  C  Q  H  H  C  N  R  F :   Q  *  A  L  C  R  K  S  T  Q  L  D  P  L  N  Y  *  V  K  L  L  R  F  K  L  A  P  S  L  C  W  V  L  F  A  T  T  I  L  V  E  I  Y  Y  *  T  T  S  I  L  M  V  P  F :   S  L  Y  S  C  R  V  H  *  L  C  S  A  M  *  V  S  I  S  A  S  G  D  S  L  Q  F  P  S  R  F  *  A  T  *  R  P  C  V  S  *  L  *  A  G  C  S  L  N  L  R  *  L  L  R  T  *  W  E  C  S  L  Q  L  R  A  W  *  S  I  V  G  P  W  R  S  K  N  K  P  T  P  R  V  H  T  L  P  K  T  A  *  Q  K  K  S  *  N  Y  *  R  R  E  W  R  R  P  T  S  K  S  V  S  P  R  P  E  I  F  E  V  S  Y  L  V  A  I  I  T  Y  Y  S  F  F  W  I  K  F  A  C  S  L  L  F  L  L  H  Y  L  L  D  I  L  P  F  G  P  N  L  V  T  L  S  C  F  F  S  F  L  I  V  T  E  C  F  V  L  C  P  S  L  P  L  P  G  F  F  Y  T  I   </first_frame>
            <second_frame>  L  F  F  L  S  L  Q  I  P  F  F  F  F  Q  I  F  T  S  H  A  K  E  K  N  N  T  S  H  M  L  H  F  L  S  L  V  S  L  S  T  K  *  S  K  V  L  C  F  S  V  V  S  Q  K  Y  K  S  E  S  T  *  L  G  S  F  V  I  V  D  L  Q  N  C  V  D  I  C  V  I  Y  C  L  R  K  K  K  I  L  P  L  S  V  K  R  V  G  *  V  I  W  F  C  Y  F  G  L  S  I  I  V  V  I  I  Y  I  V  V  I  V  K  Y  G  E  R  E  E  I  V  S  C  I  G  Y  G  S  M  G  D  E  C  C  *  F  G  G  N  Y  Y  G  *  *  A  A  Y  V  G  Q  W  L  C  I  H  F  C :   Y  N  I  D  W  V  P  L  C  C  D  C  T  C  W  D  G  V  K  C  H  R  A  F  L  I  K  A  C  T  F  V  G  T  Y  L  V  L  S  C  C  K  H  V  Y  H  R  D  E  L  K  S  H  A  Q  F  S  R  I  L  P   : N  L  K  V  E  H  D  S  S  G  L  H  Y  G  M  G  P  S  *  *  T  L  L  E  G  G  *  N  V  C  C  G  C  R  Y  R  R  G  C  L  H  S  N  *  C  Q  G  *  R  Q  R  F  Y  L  C  L  C  C  S  S  V  N  I  I  A  T  D   : F  N  R  L  F  A  E  K  V  L  N  W  I  L  *  I  I  E  *  N  C  S  D  S  S  L  L  P  P  C  A  G  S  F  L  R  L  L  S  *  W  K  S  I  T  R  L  Q  V  F  L  W  C  H   : F  L  Y  T  P  V  V  F  I  S  C  V  L  Q  C  E  S  V  S  L  H  R  A  I  L  C  S  F  L  P  G  S  R  P  H  E  D  R  V  C  P  D  F  R  L  G  A  L  *  I  C  V  D  F  *  E  H  N  G  N  A  R  C  N  C  G  H  G  D  L  *  L  G  R  G  G  R  K  T  N  Q  H  Q  E  S  T  R  F  Q  K  Q  L  D  R  R  R  A  E  I  I  E  G  G  N  G  E  G  R  R  R  S  R  S  V  Q  G  L  K  F  L  R  S  L  I  *  *  P  S  S  H  I  I  A  S  F  G  S  N  L  H  V  V  Y  Y  F  C  C  I  I  Y  W  T  S  F  H  L  V  P  I  W  *  P  C  L  V  F  F  P  S  *  *  L  L  N  V  L  F  F  V  Q  V  Y  H  Y  Q  G  S  F  I  P  F  </second_frame>
            <third_frame>   S  S  F  S  L  F  K  F  H  F  F  F  F  R  S  S  L  P  T  Q  R  R  K  T  T  H  P  T  C  S  I  F  S  L  L  F  L  S  L  Q  N  K  A  K  C  Y  A  F  Q  *  Y  H  K  N  I  N  L  N  L  L  N  W  A  H  S  L  L  *  I  C  K  I  V  L  I  F  V  L  Y  I  V  *  E  K  K  K  S  C  P  S  L  L  N  E  L  G  R  *  F  G  F  A  I  L  D  Y  Q  *  L  L  L  *  Y  I  *  L  L  L  L  S  M  E  S  E  K  K  S  S  H  V  S  D  M  G  A  W  A  M  N  V  V  S  S  V  G  I  I  M  A  N  K  Q  L  M  S  A  N  G  Y  A  F  T  F   : A  T  T  L  T  G  F  H  F  A  V  T  A  L  V  G  M  V  S  N  A  T  G  L  S  S  S  K  H  V  P  L  W  E  L  I  W  F  S  V  V  A  N  M  S  I  T  G  M  N  L  S  L  M  L  N  S  V  G  F  Y  Q  :  I  S  K  L  S  M  I  P  V  V  C  I  M  E  W  V  L  H  N  K  R  Y  S  K  E  V  K  M  S  V  V  V  V  V  I  G  V  G  V  C  T  V  T  D  V  K  V  N  A  K  G  F  I  C  A  C  V  A  V  L  S  T  S  L  Q  Q  I  :  S  I  G  S  L  Q  K  K  Y  S  I  G  S  F  E  L  L  S  K  T  A  P  I  Q  A  C  S  L  L  V  L  G  P  F  C  D  Y  Y  L  S  G  N  L  L  L  D  Y  K  Y  S  Y  G  A  I  :  F  F  I  L  L  S  C  S  L  A  V  F  C  N  V  S  Q  Y  L  C  I  G  R  F  S  A  V  S  F  Q  V  L  G  H  M  K  T  V  C  V  L  T  L  G  W  V  L  F  E  S  A  L  T  F  K  N  I  M  G  M  L  V  A  I  A  G  M  V  I  Y  S  W  A  V  E  V  E  K  Q  T  N  T  K  S  P  H  A  S  K  N  S  L  T  E  E  E  L  K  L  L  K  E  G  M  E  K  A  D  V  E  V  G  Q  S  K  A  *  N  F  *  G  L  L  F  S  S  H  H  H  I  L  *  L  L  L  D  Q  I  C  M  *  F  I  I  F  V  A  L  F  I  G  H  P  S  I  W  S  Q  F  G  D  L  V  L  F  F  F  L  L  N  S  Y  *  M  F  C  S  L  S  K  S  T  T  T  R  V  L  L  Y  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47954" stop="47810"/>
                    <exon start="46811" stop="46627"/>
                    <exon start="46038" stop="45838"/>
                    <exon start="45016" stop="44855"/>
                    <exon start="44738" stop="44388"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLSMESEKKSSHVSDMGAWAMNVVSSVGIIMANKQLMSANGYAFTFATTLTGFHFAVTALVGMVSNATGLSSSKHVPLWELIWFSVVANMSITGMNLSLMLNSVGFYQISKLSMIPVVCIMEWVLHNKRYSKEVKMSVVVVVIGVGVCTVTDVKVNAKGFICACVAVLSTSLQQISIGSLQKKYSIGSFELLSKTAPIQACSLLVLGPFCDYYLSGNLLLDYKYSYGAIFFILLSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWVLFESALTFKNIMGMLVAIAGMVIYSWAVEVEKQTNTKSPHASKNSLTEEELKLLKEGMEKADVEVGQSKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="59982" PGL_stop="51523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59982" e_stop="59954"/>
            <exon e_start="58569" e_stop="58510"/>
            <exon e_start="58421" e_stop="58339"/>
            <exon e_start="58186" e_stop="58027"/>
            <exon e_start="56775" e_stop="56646"/>
            <exon e_start="55128" e_stop="54970"/>
            <exon e_start="53635" e_stop="53457"/>
            <exon e_start="53373" e_stop="53293"/>
            <exon e_start="53202" e_stop="53053"/>
            <exon e_start="51881" e_stop="51523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.685" e_score="0.962"/>
          <exon-intron don_prob="0.755" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.706" acc_prob="1.000" e_score="0.857"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59982" e_stop="59954" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59953" i_stop="58570" i_length="1384"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="58569" e_stop="58510" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="58509" i_stop="58422" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="58421" e_stop="58339" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58338" i_stop="58187" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58186" e_stop="58027" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58026" i_stop="56776" i_length="1251"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="56775" e_stop="56646" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.685">
            <gDNA_intron_boundary i_start="56645" i_stop="55129" i_length="1517"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="55128" e_stop="54970" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.755" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54969" i_stop="53636" i_length="1334"/>
          </intron>
          <exon e_serial="7" e_score="0.857">
            <gDNA_exon_boundary e_start="53635" e_stop="53457" e_length="179"/>
          </exon>
          <intron i_serial="7" don_prob="0.706" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53456" i_stop="53374" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53373" e_stop="53293" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53292" i_stop="53203" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53202" e_stop="53053" e_length="150"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="53052" i_stop="51882" i_length="1171"/>
          </intron>
          <exon e_serial="10" e_score="0.986">
            <gDNA_exon_boundary e_start="51881" e_stop="51523" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59982" stop="59954"/>
              <exon start="58569" stop="58510"/>
              <exon start="58421" stop="58339"/>
              <exon start="58186" stop="58027"/>
              <exon start="56775" stop="56646"/>
              <exon start="55128" stop="54970"/>
              <exon start="53635" stop="53475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53510" stop="53457"/>
              <exon start="53373" stop="53293"/>
              <exon start="53202" stop="53053"/>
              <exon start="51881" stop="51526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53088" stop="53053"/>
              <exon start="51881" stop="51523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGATTAAGAAAGCATACTACATTAAG : GCACGACAGGTTCATCCTGATAAAAATCCAAATGACCCTCTAGCTGCACAGAATTTTCAG : GTGTTGGGAGAGGCTTATCAGGTACTGAGCGATCCATCTCAACGGCAGGCTTATGATGCACATGGAAAATCAGGAATTTCAAC : AGATGCAATCATTGATCCTGCAGCAATTTTTGCTATGCTTTTCGGAAGTGAACTTTTTGAGGAGTACATAGGTCAGCTTGCTATGGCATCAATGGCTTCATTGGATATTTTCACTGAAGGTGAAGATTTTGATGCTAGAAAGTTACAAGAGAAAATGAGG : GTTGTTCAGAGGGAGAGGGAAGAAAAGCTTGCTGAAACTTTGAAGGACCGGCTCAATGTATATGTACAAGGAAATAAAGAGGACTTTGTTCGTCATGCAGAAGCTGAGGTGTCGAGGCTTTCAAATGCAG : CTTATGGTGTTGATATGTTAAACACAATTGGGTACATATATGCAAGACAGTCAGCGAAAGAGCTTGGAAAGAAGGCATTATATTTGGGTGTGCCTTTTATTGCTGAGTGGTTCAGAAACAAAGGCCATTTTATCAAATCCCAAGTAACTGCTGCAACAG : GTGCAATTGCTTTGATTCAGCTGCAAGAGGACATGAAAAGGCAGCTCAGTGCAGAAGGAAATTACACTGAGGAAGAACTTGAAGAGTACATGCAATCCCACAAAAAGCTAATGATTGATTCTCTCTGGAAGCTTAATGTAGCAGATATTGAAGCCACTCTTTCTCGTGTTTGTCAAATG : GTTCTACAAGACAACAACGTAAAGAAAGAAGAGCTTCGTGCCCGCGCAAAGGGGTTAAAGACTCTCGGCAAAATTTTTCAG : AAGGTTAAGCCAGTCAATGAAGTCGAAACTACAGAAAATGGCGTCCATAAGCTGGACGGAAATGAACCAAGCTATGACTCTCGTTCTTCAACTGCATCAGTACCATCTCAAAACAAAGAAGAGGTGCCTTATACAGTATTTGCATCACAG : AGCCCATACGTGGAGGCTCCACAGTTTACCGGTGGTCAATCCAGCTATAACTTCCCCATGCCGACTGCACCACCAGGTGCGCAGAGACACAGGTAGACAGACAAATGGTGGACGCCGCAAGAATTTGTGTAGCTTGTGAATTTGTAGTGAGTTTGAGTTTCTTATGTATCCCTAGTGTGCTATATTTAAAGCATAATTCTTGCTTAGCAGAGAAAAGCTTCTGTCATATTGCTTTTTATGAAGGACTGCTTTGTAATTAATATAGTTATTAGAGTGTAAGTTGTGTGGCCTGTGAATGCAAAATATTGTATATTGCATTGGTCTATTCTTCTTGTTTGTTGTATTAACCAATTTAATGT</gDNA_template>
            <first_frame> L  R  L  R  K  H  T  T  L  R :   H  D  R  F  I  L  I  K  I  Q  M  T  L  *  L  H  R  I  F  R :   C  W  E  R  L  I  R  Y  *  A  I  H  L  N  G  R  L  M  M  H  M  E  N  Q  E  F  Q   : Q  M  Q  S  L  I  L  Q  Q  F  L  L  C  F  S  E  V  N  F  L  R  S  T  *  V  S  L  L  W  H  Q  W  L  H  W  I  F  S  L  K  V  K  I  L  M  L  E  S  Y  K  R  K  *  G :   L  F  R  G  R  G  K  K  S  L  L  K  L  *  R  T  G  S  M  Y  M  Y  K  E  I  K  R  T  L  F  V  M  Q  K  L  R  C  R  G  F  Q  M  Q  :  L  M  V  L  I  C  *  T  Q  L  G  T  Y  M  Q  D  S  Q  R  K  S  L  E  R  R  H  Y  I  W  V  C  L  L  L  L  S  G  S  E  T  K  A  I  L  S  N  P  K  *  L  L  Q  Q  :  V  Q  L  L  *  F  S  C  K  R  T  *  K  G  S  S  V  Q  K  E  I  T  L  R  K  N  L  K  S  T  C  N  P  T  K  S  *  *  L  I  L  S  G  S  L  M  *  Q  I  L  K  P  L  F  L  V  F  V  K  W :   F  Y  K  T  T  T  *  R  K  K  S  F  V  P  A  Q  R  G  *  R  L  S  A  K  F  F  R :   R  L  S  Q  S  M  K  S  K  L  Q  K  M  A  S  I  S  W  T  E  M  N  Q  A  M  T  L  V  L  Q  L  H  Q  Y  H  L  K  T  K  K  R  C  L  I  Q  Y  L  H  H  R :   A  H  T  W  R  L  H  S  L  P  V  V  N  P  A  I  T  S  P  C  R  L  H  H  Q  V  R  R  D  T  G  R  Q  T  N  G  G  R  R  K  N  L  C  S  L  *  I  C  S  E  F  E  F  L  M  Y  P  *  C  A  I  F  K  A  *  F  L  L  S  R  E  K  L  L  S  Y  C  F  L  *  R  T  A  L  *  L  I  *  L  L  E  C  K  L  C  G  L  *  M  Q  N  I  V  Y  C  I  G  L  F  F  L  F  V  V  L  T  N  L  M  </first_frame>
            <second_frame>  *  D  *  E  S  I  L  H  *   : G  T  T  G  S  S  *  *  K  S  K  *  P  S  S  C  T  E  F  S   : G  V  G  R  G  L  S  G  T  E  R  S  I  S  T  A  G  L  *  C  T  W  K  I  R  N  F  N  :  R  C  N  H  *  S  C  S  N  F  C  Y  A  F  R  K  *  T  F  *  G  V  H  R  S  A  C  Y  G  I  N  G  F  I  G  Y  F  H  *  R  *  R  F  *  C  *  K  V  T  R  E  N  E   : G  C  S  E  G  E  G  R  K  A  C  *  N  F  E  G  P  A  Q  C  I  C  T  R  K  *  R  G  L  C  S  S  C  R  S  *  G  V  E  A  F  K  C  S :   L  W  C  *  Y  V  K  H  N  W  V  H  I  C  K  T  V  S  E  R  A  W  K  E  G  I  I  F  G  C  A  F  Y  C  *  V  V  Q  K  Q  R  P  F  Y  Q  I  P  S  N  C  C  N  R :   C  N  C  F  D  S  A  A  R  G  H  E  K  A  A  Q  C  R  R  K  L  H  *  G  R  T  *  R  V  H  A  I  P  Q  K  A  N  D  *  F  S  L  E  A  *  C  S  R  Y  *  S  H  S  F  S  C  L  S  N   : G  S  T  R  Q  Q  R  K  E  R  R  A  S  C  P  R  K  G  V  K  D  S  R  Q  N  F  S   : E  G  *  A  S  Q  *  S  R  N  Y  R  K  W  R  P  *  A  G  R  K  *  T  K  L  *  L  S  F  F  N  C  I  S  T  I  S  K  Q  R  R  G  A  L  Y  S  I  C  I  T   : E  P  I  R  G  G  S  T  V  Y  R  W  S  I  Q  L  *  L  P  H  A  D  C  T  T  R  C  A  E  T  Q  V  D  R  Q  M  V  D  A  A  R  I  C  V  A  C  E  F  V  V  S  L  S  F  L  C  I  P  S  V  L  Y  L  K  H  N  S  C  L  A  E  K  S  F  C  H  I  A  F  Y  E  G  L  L  C  N  *  Y  S  Y  *  S  V  S  C  V  A  C  E  C  K  I  L  Y  I  A  L  V  Y  S  S  C  L  L  Y  *  P  I  *  C </second_frame>
            <third_frame>   E  I  K  K  A  Y  Y  I  K  :  A  R  Q  V  H  P  D  K  N  P  N  D  P  L  A  A  Q  N  F  Q  :  V  L  G  E  A  Y  Q  V  L  S  D  P  S  Q  R  Q  A  Y  D  A  H  G  K  S  G  I  S  T :   D  A  I  I  D  P  A  A  I  F  A  M  L  F  G  S  E  L  F  E  E  Y  I  G  Q  L  A  M  A  S  M  A  S  L  D  I  F  T  E  G  E  D  F  D  A  R  K  L  Q  E  K  M  R  :  V  V  Q  R  E  R  E  E  K  L  A  E  T  L  K  D  R  L  N  V  Y  V  Q  G  N  K  E  D  F  V  R  H  A  E  A  E  V  S  R  L  S  N  A   : A  Y  G  V  D  M  L  N  T  I  G  Y  I  Y  A  R  Q  S  A  K  E  L  G  K  K  A  L  Y  L  G  V  P  F  I  A  E  W  F  R  N  K  G  H  F  I  K  S  Q  V  T  A  A  T   : G  A  I  A  L  I  Q  L  Q  E  D  M  K  R  Q  L  S  A  E  G  N  Y  T  E  E  E  L  E  E  Y  M  Q  S  H  K  K  L  M  I  D  S  L  W  K  L  N  V  A  D  I  E  A  T  L  S  R  V  C  Q  M  :  V  L  Q  D  N  N  V  K  K  E  E  L  R  A  R  A  K  G  L  K  T  L  G  K  I  F  Q  :  K  V  K  P  V  N  E  V  E  T  T  E  N  G  V  H  K  L  D  G  N  E  P  S  Y  D  S  R  S  S  T  A  S  V  P  S  Q  N  K  E  E  V  P  Y  T  V  F  A  S  Q  :  S  P  Y  V  E  A  P  Q  F  T  G  G  Q  S  S  Y  N  F  P  M  P  T  A  P  P  G  A  Q  R  H  R  *  T  D  K  W  W  T  P  Q  E  F  V  *  L  V  N  L  *  *  V  *  V  S  Y  V  S  L  V  C  Y  I  *  S  I  I  L  A  *  Q  R  K  A  S  V  I  L  L  F  M  K  D  C  F  V  I  N  I  V  I  R  V  *  V  V  W  P  V  N  A  K  Y  C  I  L  H  W  S  I  L  L  V  C  C  I  N  Q  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0057G02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59980" stop="59954"/>
                    <exon start="58569" stop="58510"/>
                    <exon start="58421" stop="58339"/>
                    <exon start="58186" stop="58027"/>
                    <exon start="56775" stop="56646"/>
                    <exon start="55128" stop="54970"/>
                    <exon start="53635" stop="53457"/>
                    <exon start="53373" stop="53293"/>
                    <exon start="53202" stop="53053"/>
                    <exon start="51881" stop="51786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKKAYYIKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPSQRQAYDAHGKSGISTDAIIDPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEDFDARKLQEKMRVVQREREEKLAETLKDRLNVYVQGNKEDFVRHAEAEVSRLSNAAYGVDMLNTIGYIYARQSAKELGKKALYLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKRQLSAEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNVKKEELRARAKGLKTLGKIFQKVKPVNEVETTENGVHKLDGNEPSYDSRSSTASVPSQNKEEVPYTVFASQSPYVEAPQFTGGQSSYNFPMPTAPPGAQRHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60686" PGL_stop="60380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60686" e_stop="60380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="60686" e_stop="60380" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60686" stop="60380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTGAATTTTTTCTTCTATTTTTGTACGTGGAATTGATGTTTTCTGTTCTTCGATCCCCTTTTTTTCGAACTTCATAGCAGTTTCATTGTTTTAATCTCTTAAATTGCTGACCCTTTCGGTTTGTTAGAGGAAAAATTTGATCTTTTTTTTTTTTGATTTTGTACGTGGGGTTGTTGTTTCCTGTTCTTAGATCCCCTTTTTTGAAACCTCATAGCAGTTTATTGTTTTAATCTCTTAAATTGCTGACCCTTTTGGTTTGTTTAGAGGAAAAATTCGATCTTTTCTTCGATTTTTTGTACGTGGG</gDNA_template>
            <first_frame> K  L  N  F  F  F  Y  F  C  T  W  N  *  C  F  L  F  F  D  P  L  F  F  E  L  H  S  S  F  I  V  L  I  S  *  I  A  D  P  F  G  L  L  E  E  K  F  D  L  F  F  F  *  F  C  T  W  G  C  C  F  L  F  L  D  P  L  F  *  N  L  I  A  V  Y  C  F  N  L  L  N  C  *  P  F  W  F  V  *  R  K  N  S  I  F  S  S  I  F  C  T  W  </first_frame>
            <second_frame>  N  *  I  F  S  S  I  F  V  R  G  I  D  V  F  C  S  S  I  P  F  F  S  N  F  I  A  V  S  L  F  *  S  L  K  L  L  T  L  S  V  C  *  R  K  N  L  I  F  F  F  F  D  F  V  R  G  V  V  V  S  C  S  *  I  P  F  F  E  T  S  *  Q  F  I  V  L  I  S  *  I  A  D  P  F  G  L  F  R  G  K  I  R  S  F  L  R  F  F  V  R  G </second_frame>
            <third_frame>   I  E  F  F  L  L  F  L  Y  V  E  L  M  F  S  V  L  R  S  P  F  F  R  T  S  *  Q  F  H  C  F  N  L  L  N  C  *  P  F  R  F  V  R  G  K  I  *  S  F  F  F  L  I  L  Y  V  G  L  L  F  P  V  L  R  S  P  F  L  K  P  H  S  S  L  L  F  *  S  L  K  L  L  T  L  L  V  C  L  E  E  K  F  D  L  F  F  D  F  L  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0057G02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 179 chains have been computed
$ 
$ memory statistics:
$ 255160 bytes spliced alignments in total
$ 117 spliced alignments have been stored
$ 2180 bytes was the average size of a spliced alignment
$ 17120 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 2140 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 192 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:30:47
-->
