<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:39:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570740" ref_strand="+" ref_description="SGN-U570740 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147784783|emb|CAN66282.1| (e_value=8e-51) hypothetical; (*ATH) AT1G50730.1 (e_value=2e-35) | Symbol: None | expressed protein | chr1:18798943-18806931 FORWARD | Aliases: F4M15.4, F4M15_4; (*SWP) sp|Q9VHM2|U505_DROME (e_value=8e-13) UPF0505 protein CG8202 OS=Drosophila melanogaster GN=CG8202; ">
      <seq>gagcgagacatatatatatatatatataccttaccaaaaaattgacatttttctctgaaattcacatagcatcctgtagctaattgcacaactttggcttcatggaactcaaatttcgacatcgagattacaaaagtgaagaacaagttcactctctccatcgggtggcagcagtgactcatcctctctcacttcaatcaccgtcgcgtgaccaggttgatgttacggattatggcagggacgagttctttgatccattaaggggggatcatggaaaaccagaggattccatgaagggattaggaagaacatctactgaaattgcaggtgaaccatatagagatattgctattcattttctgggcaaggagtggacatcttacaagaaagtcttgatgcaaaaatttcctgtctccaaaatgatctctatttcttcgctgtcaagctcaattatgaagacaggcaagggtcctgagaaaccctcgacagatgtacatttagaggagctagatgaagaaggtgttaactatatcaccctgcaggagtatgtctcacgcttaactgaacttaaagatgaaattagtcgtgcctggcatgcaagtgaccgtgtaacctcctttaatttgtcaatcaaggttgctaagttactgtcggacacatctgtactacaattttatccaacactttttgttctagctacagaaatactagatatgttaggggatatgggtatgggaacgcatcangcagaaagctgaatacactgaatatgggacattagtccatttaccagataactttcaagcaactcatatctgtgctgaagccaaagaaaactgctantactggttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="5137" stop="13518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5437" g_stop="5651" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5652" i_stop="8901" i_length="3250">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8902" g_stop="9123" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="437" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9124" i_stop="9801" i_length="678">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9802" g_stop="9832" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="468" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9833" i_stop="10289" i_length="457">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10290" g_stop="10456" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="635" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10457" i_stop="12345" i_length="1889">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12346" g_stop="12502" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="793" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12503" i_stop="13156" i_length="654">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13157" g_stop="13218" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="855" r_length="62" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U570740" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5437" e_stop="5651"/>
          <exon e_start="8902" e_stop="9123"/>
          <exon e_start="9802" e_stop="9832"/>
          <exon e_start="10290" e_stop="10456"/>
          <exon e_start="12346" e_stop="12502"/>
          <exon e_start="13157" e_stop="13218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGAGACATATATATATATATATATACCTTACCAAAAAATTGACATTTTTCTCTGAAATTCACATAGCATCCTGTAGCTAATTGCACAACTTTGGCTTCATGGAACTCAAATTTCGACATCGAGATTACAAAAGTGAAGAACAAGTTCACTCTCTCCATCGGGTGGCAGCAGTGACTCATCCTCTCTCACTTCAATCACCGTCGCGTGACCAGGTTCATTGTTTTTCTCTTCATTGTCTATATTAATCGCAGCACTGCTTGCATTTGAATCAAGGAGAATGTTGTAAAGTATTAAGTTTTTGATCAATTGTACCAAAGAGTGGAATCTAGGGTGAACAATTTCAGTATGATCAGGGTTTAAACAGAGTAATGAACCAAACTACATATTATCATTATTGACCATGTTTCCTTGTGAAATTCAACCTTTTATATTTGGTCATGATGAATAGAAGTTGGAGAGTTTTTCTTGGGAGTAATTTGGAGTGAAAAAAGTGATTTTTTTTTCGGATTTCTAGAAAATTCTAGAATTCAACTTGAAGTTGAAATTTAATTGGCCAAACGTGTTTTCTGGGGTTGAACTATGGGGAAAAGTAAAAAATTCATGGCCTAATGCCAGGATCAAATTTCATGGCCAAACTACTCATTATCATGATTAAATCTTCTTTATTTCTGAATAGATTAGCCAAAATAATAAAATTTCAATTTGAAAATTTTAAGTTAAATAGTCATAGGTGAAGTGGTTTCCCAGTGGTTCATTATGAAAAAAAAAAGTTATTAAGAAGTAGATAAGTTAGAACTGCATTCAAGTTTTTTTGTGCTCTGATATAATCTGAGCATGAAGCTCACAAACTCATTACTGAAGGATATCATAAGAGGAAGAAGAAGAAGAGAAAGGAAATTCTATATTGAGAAAATGAGCAGAACTGCTTAATGGGCAAACCCAATGGAACAATGTCCAGTGCTTACAAGCCACATGTTCAAATCAATATTTCCACACTTCCCATCAAGATTGAGGGTGTAATATGTTAAGAACACCAAGCTTGGCAACAGGTGATGATATTGTTTTTGTCCCAGACCCATAGTCAACAAATCTGCTATTTGTTGCTGTGTTGGAACATACACTATTTCCACCAAATCATCCTTAATCTTATCTCAAATGAGATGCAGTCAATCTCTATGTTCTTAGTCCTCTAATGGAGGATTAGGTTGGCTGCTACCTGGCGTCTGCATTGCTGACTATCAGTCAATACTGTGACAGGCATCCGATTGTGAACATCTCGTTTAGTGAACAACCTAAGCAACCAGGTTTCTCTGCCACAACTGTGTCCATACTCCTGTATTCAGCCTCAGTTGAATATCTAGAAACGGTCTGCCGCTTCTTTGATTTCCAGGACACTATAAACTCCCCAAATAACCACATAACCTGTTGCTGATATTCTTATATTAGGGCCACGTAGCCCAATCTGAGTCACACCTACAAGTCAATTCTTCAGTAGGATGAGCTTGCAATCGAACTCCTTGGCCAACTATACCTTTCAAATATCTAACCACTGTAGTGGTACCCACCCAGTGTGACTTCTACGGATGTTGCATAAACTTACTGAAAGTTTGGACAGCATAACTGATATCAGGTCTTGTGATGGTAGCATACATAAGCTTCGCAATCAACCTCTGATAAGAAGTGATATTATTCAAGAATGCATCTCCTATATTGGCAGTAACTTAATCAAACTCTAAAGTAGTCATCCTCAAGTTGAATTCTAAATGAATAGACACTGGCTTTGCACCAGTGAGACCTATGGTTGAAATGAGCTCTACTATGTACTTCCTTTGGTGCGGAATGACCTCAGTTTTGGATCTCAGGACTTGAATGCCCAAAAAAATCTTGAGCTCTCCCAAATCTTTCAACTTGAACTGCTGATGCACTATTTCGTTGGCTTCATGAATCATTTGAACATTGCTTCCAATGATTACCACCAGAATCTGCTATCCAGTCATTTGAGAAAACATTAGCCATTAAACGAGTTGTGATGCTTGTTGTTTGTCTTGATCTCCTTTGTATCCTTACTCAATAGATTTAATATCTGCTTGTACTCACCATCTGTGAAACTTGTCCTTTGGGCACAAAAGCATTATTCACATCATGACTAGTTGAATCAATCTGATTATGATCACCATGGCTTCCAGAAATGTTTTTCGCTCAAGCAAAAGAGTGTTGGCCATTGTTGCTAGACTGACCTCCATGTGGTCCAAAGTTTCCTTATCCTCCAAAATTACTAGACTGACCTCCATGTGTTCCAAAGTTCTCACACCCTACAGAATTACCATGACCAGATGTTCCCTTAGGATAGCCATTTCCATTTCCAATATTCCTCCTTTATCTCCAATCAGCAGGGTAGCCAATCAATATGTAACAATTCTCCTTGGCATGTCCAGTGAAATGACAATATTCATATTGTGAAAGCACCTTTCTTTCTCTATAGTTCGAATTTCCTTGATTATTGTTTTGAGTTCCTTGATTTCTACAGACTCTCATAGCTATTGGATCTGGTTTCTCATTTGCAGTAACTAAACAAGCTGAATGCTGAATCTCATCCTCAATTATTATTATAGCATAAGATGGTTTATAGATGGAGTAGTGCCTTTCAACAAGCTTATAGCATAAGATGGTTTATAGATGGAGTAGTGCCTTTCAACAAGCTCTTTGTATGTGCTTGTTCATATGATTCATTCAATCCAGTTAAAAATTGTATTAACCTCAAATGATATAGATGGTCCTCATAGTCTTTTGATTTAGGACAACCACAACTTGGTGAAGGTACAAGAGCGTCATATTCACCCATAAATTTTTCAATTTTGGGAAATAGGTCGAAACAGAATCAGTACCTTGTGAGAGAGTTGTGATTTCCCTGTGCAACTGATGAATTCTCATTTGTCAAATGTTCCTTCAAATCTGCCCAAACTGCAAAAGCACTGGTATGATATACAACTCCGTTAAGAAGTTCCTCACCGATTGTACTCATCAGCCAAGACGGTACGATGGCATTGCATGTCTCTCATTGGTCATGTAATTCATCTCTATACAGTCCCCTTATGCATGAACCTGTCACGAAACCATATTCTCTTTCCCATCAGTGAGATCCCCATCGATCTGCTCCACACTCCATAATTCTCAGAAATAGAGAAGACATACGTAAGACAAAAAGAAACTACTCCTATAAGAGAAGAGTAAACCAGCACAGGAAAAGAAATCAGATGATTGTGTATGCCATATATGTAGCTAAACTTGTACCCGCTGTTAGTGCTTCAAAAGATTATAATGGTGATACCAATATACCACCATGGTTCATCAATTGTTAAGTCGATAACCTTACTCTATGATTGATCACGGGCTCTGTTTTTCTTAGCATATTCAGATGTTTTGTCATTTCCTAATTTTTCCATCACTTGGCTGAGTCTGTAGGTTGATGTTACGGATTATGGCAGGGACGAGTTCTTTGATCCATTAAGGGGGGATCATGGAAAACCAGAGGATTCCATGAAGGGATTAGGAAGAACATCTACTGAAATTGCAGGTGAACCATATAGAGATATTGCTATTCATTTTCTGGGCAAGGAGTGGACATCTTACAAGAAAGTCTTGATGCAAAAATTTCCTGTCTCCAAAATGATCTCTATTTCTTCGGTTAGTATGCCACTTTAATCTTCACACACATGCTATTGAGCTACTTACATATTGTCCAAAAGAAAGGTGATCTTAGTGGATCCTTGTGTTTCCTAGATTACATAGAAATGCTCTTAGAACAATATCTTTTTGCTTGCTTACCAATTACCATAAAACAACTAAGAAAATCACTTCTAGTTTAAGAAAACAAATCTGTGGAAAATATTTTCCTTCATACCTAACACACCCTAAATTTGTTTTGAGGTTTAATTATCAATTTCTATTTATGTTCAATGAATTAGATGGAAATTTTTTTATTATGCTGCAGTTGCTAGCTGCATCTTATAATGAAATTATGTTTGTTTTGTCCCAAAGTGCTTTGGTTTCCTTCTTTTCTTTTAAGTTTTTCTTTTTGGGTGGAGGGTTGTGGACTTTATTAACACTGCAGCAAATTTCAAATGGTTGTGAATTTCTTGGTTTTTTTACCTTATGATTAATATATTTTCATTGTCTACCTTTGGGATCAAATCAGAAGCTTTTTGCTTAAAAAGAACAACAGAAAAGAGAAGGAAAAAGTTAAGAAGAAACATTAGGGTGTCAACAAAAAAAAATTACAAAATTATTAATCAGTGTTTTATTGTGTTTAGTTTTAATACTGTTCTGGGTTTCAGTATGACCTTTTTTTATTGCTCCTTACAGCTGTCAAGCTCAATTATGAAGACAGGCAAGGGTATGATATATCCTCACTATATTTTCTTTATGTGGCTCATTATTTAGTTTGAAGTGTCCCAAATTAATTGCATATGTTGTCACCCAATAATATTCTACATTTTACAAGGTTTAAAACATTTTGATTTAAGCTTGTGATACATTATTTCATTTAATATGACTTGCATACCTAATCCAAATCTACTTCAAATGTTTTCTACCTGTGCAAAATCAATATTAAGTCATCTGGTTCCTTAATCTGTGTGGCTCAATCAAAGATTGTCATACAAAATAGGACAAAAGAAAAGATTATAAAGCTTTTTTCTTTATTTTCATGGACTTTTAAAGTCCTCTCATCCTTTTATTTTCTAATGCAGCTAAGAAAAATGTAAAGGGGGTATCATTTGAACTTGTTTGATATGTTAGACTAGCTATCTTATTTCCTCGGCAATAATTGCTATGATGATAAAATATTGTAGGTCCTGAGAAACCCTCGACAGATGTACATTTAGAGGAGCTAGATGAAGAAGGTGTTAACTATATCACCCTGCAGGAGTATGTCTCACGCTTAACTGAACTTAAAGATGAAATTAGTCGTGCCTGGCATGCAAGTGACCGTGTAACCTCCTTTAATTTGTCAATCAAGGTGGTTTTTGTTCTAAGCTGTTTCACATTTGCTTCTTACTGGATTCTGAACTTTCCAATCAAGTGATCATTCTTTTTGGATATGTACCTCTCAATTTAACAATTTTATTTGGTATTCGTACAGTAAGTCAATTTCAAAGTTGCTGCTCTCTCCCTATCAATATGTTTGTCTTAGTTTGACTCGCCATAGAGTTTGAGAAAATAAAAAAGACTTTTGAATCTTGTGGCGTTAAACTAAAGATGTGCATAATGTACCAAACATCCCCCCTTTAAATCTTGTGGTCATACATATGTAATGTGAAAGTTGAAATTAAAGAGTTGTCAAATGAAGAAAGAGACACTTTTTTAAAATAGACCAAAAAGGAAAGTAAGACAAACAAATTGAAACAAATGGAGTATTTAATACTGGCTCATAGCTCAGTCAGGTTCACTCAGGTTATTCCTGATCAAGTGATCAGTCTTTTTGGATAAGTACCCACCGTTTAAAAATTTATTTCGTATTTGTTCGAAAAGTCAGTTTCAACTTTCAAGTTTTCCATTTAGTAATACTTGGCTGACTTATGTTTTAATTATGTACCCGTCCGTTTCAAGTTTGCTAGGGATGGGCTTTTTCAAGACAAAGAAAAACCCTCTGAAGAGAATATTTTTTGTTCAGTTTTAGTTTTTTAAAATTTGGGTTATTCGGTTCGGTCTTCTTTCTTAAGGAAATAAAATTGGTCAAACTGAAAAATCGATATTTGTACTTGTAAGTAACATGCTCAATCATTGTGATCTAATAGTGTGAGAAATTGACATGAATCCAAAGGAAGAAGGGATATTGTAAAGAATTGGAAGGATAACTGAAAGAAGTTATTATTTCATTCCTCTAAATCTAAGAAAACATTCGACAAGTGGGCCAATAATGTAAGTTTAAGGAAAATAATTTATTTGTTTGTTTATGTTATTTGTTTGCTGATTTATTTCCTTTACCTTCATTGAGTCTTTGTGAGCCATAAATTAAGAACGGGGATTTTTAATCTTAATTTTCTGTGTTCTCATATCTTCACTTTGTTTCTTTTCAAATTTTCATATCTTCCCTCCAGTGTTTGTCTATATACTTTTTCCAGAATAAGGAAAAGATGAGTGGTGGTGCAATATTAGTGTTAGTTTTGAACTATCAAGTGTAGAAGTAATTCCCAATTTGTTTTGTTATCTGACAAAACTACATTGGTAGGAAGCAAAAGTTATGGTGCTACCACAAGTTCTGATGAATTGAATGACCAGTCAGGAGAAGATTTTGAATAAGGCTAACATGATAAAGCTTAAACCCAAAATCCGAACCAAAACAAATATCAAAGAACAAACCAAACTAATTTCAGATTGATTTCAGTTTTCATTTTTACCAAACCATAAACCGAAATACTGAACCAACTTCTAAAAACCAAACAACCGACTGAATTTTCATTCCTAGTTCAAACATATAGAATCAATCAACAATAAGACCAATTTAGTTCTATCTCCACATTGATTTGAGGCAAACATTGCAGACTATTCCCTTATTTTCTGCTTCCAACTGATGACACCTGTTACTGAAAAGATGAATTCATCTGTTAAGGTACAACACACTTTAACCTGTTTTTCTGATAGACCAACATAATTTCAAGCAAAATAATCAGTAAAAAGGACACGAATGAATTGCTTTCTTATAAATCATTCAACAGTATACATTTTTTCTCTTCTCATTGATTTCAACAGTAAAACAAATAATAAAAATATGAAGGATCAAATTAATTAACTGGTCTAATGGAACCACATATATAATAACTTAAGACTCTTCTATAACATCACCTGGCCTGTTGGCAATTCTACTTTCATTTTTTAGCTAATTGTGTCTTGACTTCTCTTGAATAGGTTGCTAAGTTACTGTCGGACACATCTGTACTACAATTTTATCCAACACTTTTTGTTCTAGCTACAGAAATACTAGATATGTTAGGGGATAT-GGTATGGGAACGCATCAGGCAGAAAGCTGAATACACTGAATATGGGACATTAGTCCATTTACCAGGTATATCCCTCACACTTATCTCTAGCTCTACTTCCTTGTGGCCAACTGGCACCTAATTTCCAATATCCGGTGTCCACTGCTGTCATGTGTTTTTACCGTGACTCAAATTTAGTCTCTAATGTACTGTTTGTGTAAAATAAGTTTGTCATCATCCTTGTGTATAAATCAACTTGGAAATAATTGGTTAGATTTTCTAATTGATTTTGTTTGGATGAATAAGAGCAGTCTGCTGTCTGCAACTGTTCATTGTAATGGAAGACTGTAGAATCCTTAGGCCCACGGTTAGAACAGTAGATATCTCGGTAAGTTATGAAATTTGTCTTATTGCTAAGCCTGACATTGGCACCTTAAGGATCTGCAATTCTGATTATAATTAATCACAGTCAAAGAGGATGGTTATATGGAGAAGCGATGCTGGATAAGTTAATTGTGGTTTTGTAAACATTCCAAATCACAATTGGGCGGATTTTTTTTTCATTTGTAAAATTTATTTTTTAGTTGAAGGACAAGGTTTCAATGTCTTTAGTATACCAATCTCTAAGATATCAGTCGAAATTCTGTTTCTTTGTTTTCAGTATTCTGATATCCTTGATGTAATTGTTCTGGTTTCCTGAGTCACATTTCTTCCTAAAAGACGCAATTTATCTGTAACAGATAACTTTCAAGCAACTCATATCTGTGCTGAAGCCAAAGAAACCTGCTATAACTGGTTTTGC</genome_strand>
        <mrna_strand>GAGCGAGACATATATATATATATATATACCTTACCAAAAAATTGACATTTTTCTCTGAAATTCACATAGCATCCTGTAGCTAATTGCACAACTTTGGCTTCATGGAACTCAAATTTCGACATCGAGATTACAAAAGTGAAGAACAAGTTCACTCTCTCCATCGGGTGGCAGCAGTGACTCATCCTCTCTCACTTCAATCACCGTCGCGTGACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTACGGATTATGGCAGGGACGAGTTCTTTGATCCATTAAGGGGGGATCATGGAAAACCAGAGGATTCCATGAAGGGATTAGGAAGAACATCTACTGAAATTGCAGGTGAACCATATAGAGATATTGCTATTCATTTTCTGGGCAAGGAGTGGACATCTTACAAGAAAGTCTTGATGCAAAAATTTCCTGTCTCCAAAATGATCTCTATTTCTTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAAGCTCAATTATGAAGACAGGCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGAGAAACCCTCGACAGATGTACATTTAGAGGAGCTAGATGAAGAAGGTGTTAACTATATCACCCTGCAGGAGTATGTCTCACGCTTAACTGAACTTAAAGATGAAATTAGTCGTGCCTGGCATGCAAGTGACCGTGTAACCTCCTTTAATTTGTCAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTAAGTTACTGTCGGACACATCTGTACTACAATTTTATCCAACACTTTTTGTTCTAGCTACAGAAATACTAGATATGTTAGGGGATATGGGTATGGGAACGCATCANGCAGAAAGCTGAATACACTGAATATGGGACATTAGTCCATTTACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTCAAGCAACTCATATCTGTGCTGAAGCCAAAGAAAACTGCTANTACTGGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584855" ref_strand="-" ref_description="SGN-U584855 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147784784|emb|CAN66283.1| (e_value=4e-74) hypothetical; (*ATH) AT1G50730.1 (e_value=1e-58) | Symbol: None | expressed protein | chr1:18798943-18806931 FORWARD | Aliases: F4M15.4, F4M15_4; (*SWP) sp|Q7Z3J2|CP062_HUMAN (e_value=8e-15) UPF0505 protein C16orf62 OS=Homo sapiens GN=C16orf62; ">
      <seq>ggtgaagtcaaggaaatgattgttcattccagcaatttactggtggttaaagctacacggaatgacattagtgatgtcatttttgtcaaatcttgtatagcatgcagtgaagttacaatatcatctatcccatctcatctgaaacagttaaacctctacttggaaactgcagaggttgcattaatggctggtttagtttctaactcagatggacttgttgattcagcattgaggtgcttgcataatgttgacttatttgaaggatcaaggatgcccaaggacattgatgggtttcaatcaacattatgcaaattttgcagtcttattgttatgattccaggtaacattgagcgaggagtcactagcatccctaggaatatgttttccatcctcagctccttgtcatggatgctgccaagtatgaaggcaaagatgttatgtgcactcatcttaacagttgctgcgttgtcccagaataatctcctgtaccatgcaacacatgatgaggttatgggcaatgactctttgttctattgtgatcaacaatatctgcaagagctttcttcattttctgcagttcttcttcagagcttaattgatactgttgtacaagaaccaatacaggctgcccgaggaaatctcgcacttgatgcttgcaatgctattgcatcttcttttggagtatgtcaaggagcatcagatttttcctccaagctggtcgaaactgccaagctgtctttgagctctaacaacaaatatcttcagtctacaatagagtttctcaacaaccgtggacttgtgcaaaggggagagacgtaaaaagcaggaaataacatgtgttgtgtttgctgttgttaaaaagaaatcactttttgtcaaattttacttcacttgtccccaactggagataaatatcaactaggcaaaatgaagagagtttttagatgttttggaaatttccaaagaaatggtagcgccttccttgggtatatttgacatggaagagaagtagaatgattaaatcaagcaatatactttttctcttaacatggaagcgggaagggacctttctaagaagggcttgagacctatgaatacacatttaagtgttgctattacatatttcatctctaataatagatagatcctgttaaaaaaaaaaaaaaaaaactgagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="28392" stop="47683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28696" g_stop="28857" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="174" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28858" i_stop="28933" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28934" g_stop="29021" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="262" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29022" i_stop="29976" i_length="955">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29977" g_stop="30054" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="340" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30055" i_stop="37397" i_length="7343">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37398" g_stop="37464" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="407" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37465" i_stop="37535" i_length="71">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37536" g_stop="37635" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="507" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37636" i_stop="39795" i_length="2160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39796" g_stop="39912" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="624" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39913" i_stop="40002" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40003" g_stop="40059" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="681" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40060" i_stop="40312" i_length="253">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40313" g_stop="40781" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="1150" r_length="469" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40782" i_stop="40909" i_length="128">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.702" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="40910" g_stop="40940" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1180" r_length="30" r_score="0.548"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U584855" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1169</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584855" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28696" e_stop="28857"/>
          <exon e_start="28934" e_stop="29021"/>
          <exon e_start="29977" e_stop="30054"/>
          <exon e_start="37398" e_stop="37464"/>
          <exon e_start="37536" e_stop="37635"/>
          <exon e_start="39796" e_stop="39912"/>
          <exon e_start="40003" e_stop="40059"/>
          <exon e_start="40313" e_stop="40781"/>
          <exon e_start="40910" e_stop="40940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGATTGTTCATTCCAGCAATTTACTGGTGGTTAAAGCTACACGGAATGACATTAGTGATGTCATTTTTGTCAAATCTTGTATAGCATGCAGTGAAGTTACAATATCATCTATCCCATCTCATCTGAAACAGTTAAACCTCTACTTGGAAACTGCAGAGGTAATGCTAGTTCTTTCTTTATTCTTAATTTGCGCTGCTGTTAATTCAGATGAATTTAATTTGTTTGGTCTCTTAGGTTGCATTAATGGCTGGTTTAGTTTCTAACTCAGATGGACTTGTTGATTCAGCATTGAGGTGCTTGCATAATGTTGACTTATTTGAAGGTTTGTCTATGAATTATCACTGTCTATGAATTATTCTCCAGATGGCTCAGTGCATATTAGTAGTAAACTGGAAATTGTAGATTTGCACTGAACAAGATTCAATCGAGCCTTCTCTATTTCTCTCCCTATCCCTTAAATGTATCACTTACAATAACTTTTTGAAACCGACTTTGGAGTTTAGTTCCTTTCCTGATTCCGAGGAAGTTTATATCGTCATTGCCTCGAATATCCTGTACGATATATATAATAGGTGACTAAATATTTAATAATAAAGGTAACACAGTTTCATTCTCACTTGCTTTAACATTAGTAGAAAGCTGACTACCATAACACCCGCAATGGATAATTAAGCATCTCAGTTTATTATTGAGAACAACAATGAAGTCGAGCTTATGAGAATCACATTCTGCTCATGGTCAGTTAGGAGGATAGTTGAAGTGCTTGTTGCCACTATTCACATTTTACAACTAATAAAAAAAATTACTTGCACCAAATGGTGTGTGCAGCTTAGAGGTTTTGGAGATGCTCCGTGATTCTAGCCTTTGTATATGAAGTTTCAAGTTGTTGGGGAATGGGATATGGGTTTGCCTTTTGAACTGTTGGAGATAATGTTAGTGAATATGATGACAAGATAATAAAGAGGAAAAGACAAGGCAAAAGTTCTCAGTGTCAGAGCAGTAACAAGGTGCAATAATTGTGTGGAGCGCATATGCTGAATCATTTTACCTGAGTTCTCCAAGATCTTTTCATGTTTGATCCTGTATATCTTTGGCGCAAAACCTGATCAAATACTCAAACTAGCATGTCTTTTGCATTTGTTGTGAAGCCTCTTTGTCTGAATTTGAGAGGTTATGCATGCTGCTGTATCAAGAAGCAACCAGATTAAGATATTCCACCCCAGCTTTATCATGGTTTTCCGTGGTAAAATATTGAATTGTAATAACATTATCTGCAGGATCAAGGATGCCCAAGGACATTGATGGGTTTCAATCAACATTATGCAAATTTTGCAGTCTTATTGTTATGATTCCAGGTTTTTGATCTGTTCCTCTTCAATTCTTCTATTTTGCTTATCCTTTGTTATGTCTGTGTCTTGTCATCTTGGAACTTAGCACAACATGTTGTAAGCAAGACATAGTAATATCAATTGCTTGGGAATGGCCACCTGGTGAACCTGTAGTGTGAAGAGTTAATTTGCACAAACTGCATATAGATATATGTAGTAGGCTAGAACAAATCAGAACAAGTCTGAATTTTCCGAAACCCCAATGACCATGGTCTAAATTGCTTTAATTAAGTAGGAAACTCTATAAAAGGAAGTGTTTAGTCTGGTATAGAAAACCAGATCTGATACAATATGAATCAAAGCTTGATTCATTTGATTGATATCTCCAAATTCTAACTTCTGATCAACTGTTTGATCCAAATTAGTTGGCAAGTTGCCCGCAACCATTGCCTGATTTTATTTTTTCTGCACTAGCTTGAGAAACTACATTCTGTTTCTTGTTCTTCTAAAATATCAAATTACCTCCTAGTAGAACACAATATCCACACGTAGATCGTCTATAAGAAGGTGATCCTGCCCATCCACATCTATGTATCCTATGATCTGAACATGACTTTGATCCTCAAAAGGTAGTCCTTTTTCATATAGAAGAAATATGAACAATTACATTCCAATGACCAGCACTTGGACAGTCCATAAATAGACTTACAACACTTACATGATTAACAATGTCAGGAGTCACTACAAGGTAGTTCAACATACTAACCAGTCACCTATATGTTTCAGGATCACTAAGGGGCTCCCCTATCTTTGCAGGAGCTCCCCTATCTTGGCAGAAGCTTAGCATTTGGGTCCATAAGAGTGTGAATTGAGCAAGAGCCCTTCCATACGGAAATGTCTACTTCCTGTTATTCCCGTCTCCTCAAGAATGTCTAGTACATATTCTGTTGTGAATTGACAATACCTGACTTAGACAGAGCAAACTCAATACCTAGAAAATACTTCAATCCAGGAAACCCTTAGTTTGGAAGTGCTGAAAGATATATTGCTTCAATCCAGTGATACCATCTTGATCATTGCCAATAATGACTATATCAAACATAACCCACTAAGTTGATTCAAAGACTTAAGAGAAGAATACTGTATAAAACTCATAATGATCAGTTGCACTAAAATTCATGCCAACTGCTTAATTGAGATGAACTTACCAAATCAGGCTTGAGGGGACTGTTTTAGACGAGAAAGTGATCGTCGCAATAAGTGACTCCCCAGAGAGACAAAGAGCCCGTTTGGATGGGCTTAAAAAAAGCAACTTTTAAAAAGTACTTTTGAAAGTGCTGAAACTTATTTTTAAAATAAGTAGGTATGTGTTTGGATAAAAGTGCTTCAGTTGAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGGTAAACACTTTTTTCTTTATAAAAATGTCTGAAATGCCCTTAAAGTTGTTAACATGATAAAAAGTTGATTAATTTAAGGTTTTTATACTTAAAAAATTAAAACAAAATTAATTTATATTTTACATTCATAAGTAATAATATTTCCTATCATTCACATATTTCTTTATCATCACAATTTTTTTGTAATTATAATAATAATAATAATAATAATAATAATAACAAAAATAAGAATAAAAATAAAAATCATAATAATAATAATAATATTAATAAAAATAATAATAATAAAAACAATAAAAATAAAATAATAATAAATAATAATAATAATAATAATAATAATTAAAAAAATAATAACTATAATAACAATAATAATAATAATAATTATAAATAAGAATGATAATAATAAAAGAATTAAGGGCAAAAGGTAATATACTTGGTCAACATAAATGAGTTTTAAGTTGGAAAAAGAAAAGCACCCCTCACCTGACTTTTAACTTTTGGCTTAAAATAAGTCATTTTTTACTTTTAAGTCAGTTTGACTAGCTTTTAAGCACATCCAAACAGGCTCAAAGTCAGGTGATTTCTCTATATTAGCCTCAATCCTCAAGATCATGGAGAAAAACATTCTTAATGTCCAACTAGGAGGTCATGACAAATATCAGTATCACCGTGGATGGAAAAAAGATGAAAATAAATTATTTTTGCATGGGTGAGAGTATCATTGTAATCAAAGCCCGAATATCAAAATGTAATCTTTGCTCACAAGGCAAGTCTTAAGTCCATCTGTTTGATCACCTGGACTATTTGACTATAAACCTGCGGACAGCCAATTTAAATTCACCCGAATGAGAAACAAGATCCCAAGTACTATTATTGGGTAAAGCAGATATCTCCTCGTTAGTACAAGTTGAAATCCTATGGGGACTAGCATACAGTGAACAAGCACTATGGAAAGAACTTATCAAGCAGAAGTATGAAATGGAGGATAACTGGTCTACCAAAATGGTCACTAGTACTTATGGAACTAGAATCTGGAGGGCCATCAGAAACCTTTGGCCAAAATTAAGAGAAAATTGCAGCATTAGAATAGGAAATGGCATGAAGGTCTTCTTCTGGGAGGACAACTGGTTAGAACAAGGCTCCCTAAAAACTCTCTTCCAGATATCTACATCTGAACCAACAACAAAAAGACACTCTGGGGAATTTGGTCAAATCAGGGATGGATTGAGATTTAGAAGACCCCTAAATGCTTGGGAGATCCAAAGACTAGTAGACTTCTTTGGAATCCTTGAACAATTCAAAGGAACCTCCACCTCCCAAGATAGATTGTTGTGGAATCATAAAAGCAACGGAAATTTCAGTGTGAAGGAACCTTACAAAAAGTTCAACTCTTTCACCCATCAAGTTACTGGCTGGCCATCGAAACTTATCTGGAAAGTTAAAATACCTCCTAAAGTGTCCTGCTTTACTTGGATACTAGCGAAGCAGGCTGTCTTGACTCAGGAGAACCTCATGAAAAGGGGTATCCAACTGAGTCCTAGGTGTTCCCTGTGTGGAGAAGAGGCTGAAACAGTCAACCACCTCTTTCTTCACTGTAGGATCACTAATATTTTGTGGATTATTTTCGTCAATTTGAAGGACCTACTTTGGGTGATGCTAAGAAATATTGTCCAGGCCCTGAAGATATGGAGTAGCTTTGCTTACATTTCTGGTCACAAAGAAAGATGGAAGATCATCAGCACCTGTATCTGGTGGTCTGTGTGGAAAGAGAGGAACCTCATATGCTTCCAGAACTAAAGTAACAGTTCCAGAAGATGAAGATGAATTGCTTGGTTTTATTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCTGTAATGAATGCTTTAGGCACTTTGTAATTTTTGTTATTTGGGATTGAAGATCTTCCTGATACTCTCCTTTTATTCGTAATTAGTAAACCTGTAACAAGTTGTGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTACCTTCTTAAAAAAAACAAGTTGAAATCCAGGGTGAGAGACTGTTTTACCTGTAGACATGAGGATAAAAACATAGGATAAACATGGCACAAAGACATAATGAGCTGATGAGAGCCGATGACAACTCAAACATGTATAAAGGGGGTTGAGGTTACGAGTGGATCAAATACTTCTCCAAAGTGCAAAGGGTCGACTATGAGAAGAGTATGTAGTAGTTGAAGGATCTGATACAGGACCTGAATCATCTACTTGATGTTGCATGCTCACATCAAGAGTAGTGAAGTTGTAAATGATGGAACTGTGGGCGGTGAACTATAGATGGTGGAATTGTGAGACAAGATGAAGGAAAGATAATGACAGAATTCCCCAAACATGGAAGTGGTAACACCTAAAAAATGTTTAGGTTGTCAGAAGAGGAGAGTTGAGTATGGTTGTGTTCAACAAGGTGAAATCAACATGCATAAACCACTGGAGGTCAAGTGAGTAACGTCACTATACATTTTCACCCTTGAGTAACCTAAAATGTGCACTTAAGAACATGATTGGTTGACTTGTCTTTTCTCGGAGTAAAGTTATTGACCAAACACACACTTCCAAACACATGAGGTGGAAGAGAGAACAAGATCAATAGCGAAACAAAACAGCATATGGAACTTGATTTAGAGATACTTGAGGAAAGTATACAATTAATAAGATAATAAGATTTGAGAACTGTATCCCCGAAAATGTAATGTAACATGAGATTGTATGAGTAGTATGTGAGCAATCTCAATAAGATGCCTATTCCTCCTCTCAGCTTTGTTGAGATGTATAAGGGTAAAATGTTTGATTAATGATCCCATGAGAGTTCAAAGAACTACTAAACGGAGAAGATAAATATTCTGACACATCTAATTTTACAGCACTAATTTGAGACAGAATTATTATCTACTAGGTACATTGCCCGCGCTTCGCGCGGCGGTAAACTACGTTAATAATCTACTTGTGAACATTTGATCATTTAAGTGTTTTCGAGTGGGTACAGCCCTACGAAAAGTAGTCGAGAATATTTTATGTAGAGATAAAATGAAATATTTTTTTTAATATTTTGTTATTAACTCATCATTTTACTCTAGTTATTCATCACCAAAGTCTTTAGAAAAGATATATAATTGTTTCATCGTCTATATTTGTATTTTCAAAAACTGGTACAAACATTTTATTCATCTTATGTAATTAGTTTTTTACTTGATAAGTTAATTAAAATTTAAAAACACATGTCTTGGAGTTCAATGAAATAGCGTATGTCGCTCAAATAATTTGGATAAATGATGTCTTGGCAAGTTCCTTTTTCAAAATCATTCGCAGTGATAGCCAAAAGACGTATTTTGTTGTTTATGTTTCAATCAATATGGTAAAATCTTTTTTTAAAAAAAATTGACTTTTAATCTAATCTTTATAAGGGGATAATTACTTCTTTAAGATTTGATTGATATGGATTCATCCTACTTTGAGGGCTAAATTAGTGACTCCAATCTGAAATTTGAACTCCAAACATTTGATTAAGGTTGAGTAAAATACTTACCATTCCACTACATTCCTGTTTTTTTTTTCGATGTCACTAATTGATTGAATACCTCGATAAGATAGAAAGTTGAATAACTAAAACTCCAAGGTAATGTGGAACAACCATAACTTCTGAACACTCAAAAGTCCCTTTTTAAACATCTCATGGATTTTTTAGCCACTAAAAACTCTATAAAGATCAAAGTCATTTATTTTACAAGTTAAAGAATTCTAATCTACATGACACCAATAATCTAATGGTTACATCAAACTCTTGATCAACATATCTTTATTTCAACATAATGATCAAAAGCATAAACATAAACAACAAAGTTTAAAATATGTACTAAAAACAACAATTAATAACATAAGCATTAATTAATGACTATAAAAATCATACCAGTATCTGAACAATAGAATGAAACCAAAAGAAAAAACTTGAGCCTACTAAATGCATATTTTCCCCTTAAGGAAATTATTTTCCTCTAGTTCTCGAGGTTTAAAGAAATAGATCTTCTCATGATAGAACGATTTAATTCACCAGTGTATTGATATAAAATCAGTGATATCAGTGAACCACTCAACAAGAGCAAAGTACACGAATATTTAATTGTGCGGACGAAGAAGAAATTTAGAATTTTCGTTGTTTTAAAATGAGAGGAAATCCCTCGGGTAGTGTGAACAAATGATTATTGTGCCTTATCAGAATGACCACAATTCTTCATAAAAGTCACTACTCTTTTTAAAAAGTCACAACTGCTAATTTTGGAAATAAATAAATTAAAAGGGAATTCTTGTTTGTGGTGGCGCCACGTAGGCGGGCCTAGGGTTCTCTTATATATATATATATATATATATATATATGATTTTCGTATCACCCATAGTTTAAACGAGTAATGATCCTTAATTGAGCACGGATATTCAGAAATAAACAATAACCTTCCTGAGATAGAATCTGCCTGATCTAGCCGGAAAAATTATGCCTAGACGGCTGGACTAAATCTTCCAGAACTTGGATTGGAAGGGTTGGAATAGGTTTTCAACCCGAGATCTAAAAAATATTTCTGGGAGAAGTCGTTGGAAAGCTAGTTGTTGGATCAGAACCCTTACTTTGGTGATCGGTAAAGAATCAATATCAGTAGGTATGTACTCGGAACAAGCCTTTGAAGTGAGAAATGGAAAAAGAAAAACGGAAAAAGTTGTTAGAAAAGTAGATCCCACATTAAATGTAGCTGCCACTACGGAACCCTAATTATGGTGGCCGAAATAAATCAAAGCTGGTAGGAATAGGCTCGGAACGTTCCAGCGACCCAATGGAGAAAAAAACAATTCCAAAAGGAACTGATCGGAAGGAGATTGTGTTGCGGACAGCCAACCAAGACAGAAAACTGGACCTCTTTGATAAATACGGAACCCTAGTGCTGCGAGGGAGATAACTCACCTCAAAAAGGCAACAATGGCTTTGATATCATGCAAAGAAATGAATCTTGAAATTAAGTCAACCTCAAAAGCTAGCTGATGAGGGGAGGATGCGCAAGGCTATAAGGAGACCACTCATCCCTTTTTAATCCAATGTGGGACTCTTCAAGCTATTGTAATTCAAATAGTGAATGCACAAGTACCAAAACAGGAAAGGATCAATCTAACTAATTGGACTATTATTTCTAATTGATTAGCGATATTGGTTACAATATTCTTAATAGTGAGGGTCTAGTGTCTTGTGTATAGAGAGACTAGAGAGTACTACTAGCCACTAGGTCGGATGGTCCCTAATACTTATTGATGGAGAAGCAAAAAGTTGTGGAGTAGGATCATGAAATGTCTCTTGGTAACTCTGAAGAAATGGAAATATAGAGCTTGTAATGTGATGAAGATAGTTTTCAATCAGTTATGGTTCTATATTTTGTAGAAATTATGTTGCCAGTATGGAGTAATTGAACTCTGAGAGATGAACATGTTCCTTTTTTGCTCATCTTTATAAGCACTTGCATAAGATTTGCCACAGTTGGTATCCAATTTGCTTTGCTCATCTTTATAAGCATTTTTATAAGATTGGCCACAGTTAGTATCTAATTTGGATGTATATTTGGCATTGAGAACAAATAATTTGACTTTGCTTAAGGTCCTAGAACGTTGTCAAAGAACTGCATTAAGTGAATTTCTTTTTTGATAAGAATTAATCGGTTTTCTGCCTGAAGTTTATGGAAAAGTAAATTTTGAGTTAGGTAACATCTTCCTAACTAATAATTAATATAGGCAAAAAGATATTGATAGTGTGCTTAGATGTTTAGATGTCAAAAAATTTCGATAGAGGATCACGTTATACTTCCAATGAGCTTTGTGGCACTGCCTTATCTCCTGGATTTTCATTCCAGGTAACATTGAGCGAGGAGTCACTAGCATCCCTAGGAATATGTTTTCCATCCTCAGCTCCTTGTCATGGTGAGACATCCTTATATCTTCTTTTATCATTTGCTTTTCATCCTCTATTAATGTTCTATTATTGGTTGTAGGATGCTGCCAAGTATGAAGGCAAAGATGTTATGTGCACTCATCTTAACAGTTGCTGCGTTGTCCCAGAATAATCTCCTGTACCATGCAACACATGATGAGGTATTCCTGCTGTTTCATAATAATGAACTTGGTTGTATATTACATCAATTTTCAGATGTATAGTATTCCGTGCAAGAAAACAGGTAGTTTGTTGTTAAGCTTGTAGAAGGACATCATTTCTGCTGAAGCAATTAAAGATGATTTATGTAGGTAACCTTCCTGCAGTTATTATTAGTCCCTAGAAGATTTAGTCTTGGAAATATTGAGGTTTGGAGTGTTATATATATTCTAATATCTATTCTCAAGACAGGGAATATTTCCCTAAAGATGCGCTGCATCATTATCTTTGGGTATCTACTCCGATATGCTCAGGTCCTTTCTGATTATGTAAGTCAAGCACGTTGATATCCTGTTATCCAGCTTAGCAGACAGGATGGCTATTCTCCTTCTCTTGGGAATATTACTTTTAATGGCAATGGTGAAATGAATTTATAGCAGCCAAATCTAACATTTACACTAGTGATGATTAGAGATGAATTTGATCCAAGGCATAGGTGTCACTGCTGTGAATGCATCAGCTGTAGCCAAGTAGGAAAACATTATATTCCTGTTAAAGTCAGCTTTTAAGAATGAGATAGGTTAAACAAAATGATTCATTCCCGTCATCTGGATGAGCAAGCTCTTCGTACATTAGATACTCTTACTATGGGAAGACAGTTTAGGAGATTCGCATGCGAGGAGAATGCTATGGGAAGAAAGTGATTTGGGTGAAGTATGGATGTGACTGATATGAATGTTAAGGAGGTGAGAACTACTTATGGGGACGGCAAATGGATTATGAAGGGAATTTAATCTTTTCAAAGCTTATTGGATTCTATGTGGGAACTCTAAAACTGAATACGGTTCTGGCTTGATGTATCGTATGGTGACAGCACATCTAAAGAAGGCTTCCCAAATTCATTTTCTGTTATGAGTGACAAGTTCATGGTGTGGAGGTCCATAAAAGTGGCAATGTGCAGGTGACTTGAGATTATTCTTGTAAGACCTTACAGAGCTGGGAATTCGAAGAGGTTAAACATTCTCCCAGAGGTTATACATCCCTCTTCCCACACAGTTCAGAGAGAATGATTTTCAGATTTTTGAAAGGGTGATCTAGTAAATACTTCACAGTGAAGTCATACTATCATGTTCAGTTATGTTGAATGTGTAAAAGCAATACCCGATTGGAAATCATTATGCAGATCTAGAGCTTCAAGGATGGTGGAATTTGCATTCATGTTGTTAATGCAACAACAGGAGATGGAAGCAACGCACCTGCTTTTACATTGTAGGTTTCTTTGGATTTGATATATGTTTAAATTAAGTACACTGTTTCTGAGAATTGTGGCGAGGTTAGGAGCTAGCAGAGAGCTGTTATGGGGCAGGGGGTGGAGAATATTCAATTCTCAAGCTTGTATCTGGTGGAGAATTTGTGAGTACAGGAACAAGGGATGTTTTTTGAAGATAGTATGGTGTAGAGGGATGTATTAGAAGATCATGTTCCTATTTTGATCTCTTAGATTCCTTGCGAGATGACAAAGGAATACGAGTACCCCATATGTGCTCACTTTTGTATGTAAGGTTGACTCCTAGTTTTGAGGGGCCAATCTTATGTCAATAAATTATCATGTGTGTTGTGTTTGACATCTATAAACAAGTGTCTTGTATACATCAGGTCATCACCCTTCTCTTCTATTTTCTCACCGAGATAGTTCTAAAAGTTTGCTTTCTACGGAAATATCTCGGGTGTCCCTTACAGCAGGTGTGTAGGATGAATAGTGCACGAGTATACTGTATAACTTGATAAAAACAAGGTGTGTATATTGACGTTTCATCAGGTAAGGTCATCCTACATGCATCCATTTTATTTATGGGTGGAATGAGAAACTATACATGTGGGCATTTCATTTACAGGAAGAAATGCCTGTAATAAATGTATTTTTTCTTTTGAGTAAGGTCAGATTGTCGGTTACAGTTATTGTTGTGGGCATAACAACTTGCAGTTTCTGGTACTATGTTAATAAATGATGGATATGTGAAAGATTATCCTAAAAAAGGAACCGCCTTCACTCTCTTACTAGTTTTTCATTCCCTTGATTTGGATATCTATATATTTTTCATCTTTCTTTCACAAGTGTCCTAGTGCTTTACCCTCTCTATATTAATTTATCACGCATCCAGGTTATGGGCAATGACTCTTTGTTCTATTGTGATCAACAATATCTGCAAGAGCTTTCTTCATTTTCTGCAGTTCTTCTTCAGAGCTTAATTGATACTGTTGTACAAGAACCAATACAGGTAATACCTTGCTTATCCTTTTGCTCTTCCATGAAAGATAAAAGAATTGGGGAGCCGTTAATAAGCTAAATCTGAGTACTGTCTTTGAAGGCTGCCCGAGGAAATCTCGCACTTGATGCTTGCAATGCTATTGCATCTTCTTTTGAAGTAAGTCACAGTTCTTTGTGTGTGTTTTTCCTAAAATCATTGACTGAAGGACCTGCCGTCCTAGTTGGTATATAAAACTGCACCTAATCTCCAAGACATTCAAGTTAGTACCAGTACCAATTATGAAAGAGAGCTTTTTTCAGATCTTCCTATCTCTTATGGATGGACGTTAAAATGTTGGATTGTTTGTAAGGTTTGATGCAAGTAAATAGTCAAAGTTCCGTTGTCTAATCCTTGAATGCTTGTTAAGTAGGTATGTCAAGGAGCATCAGATTTTTCCTCCAAGCTGGTCGAAACTGCCAAGCTGTCTTTGAGCTCTAACAACAAATATCTTCAGTCTACAATAGAGTTTCTCAACAACCGTGGACTTGTGCAAAGGGGAGAGACGTAAAAAGCAGGAAATAACATGTGTTGTGTTTGCTGTTGTTAAAAAGAAATCACTTTTTGTCAAATTTTACTTCACTTGTCCCCAACTGGAGATAAATATCAACTAGGCAAAATGAAGAGATTTTTTAGATGTTTTGGAAATTTCCAAAGAAATGGTAGCACCTTCCTTGGGTATATTTGACATGGAAGAGAAGTAGAATGATTAAATCAAGCAATATACTTTTTCTCTTGACATGGAAGCGGGAAGGGACTTTTCTAAGAAGGGCTTGAGACCTATGAATACACATTTAAGTGTTGCTATTACATATTTCATCTCTAATAATAGATAGATCCATACTTACTGTTTTGAGACTTATGCATGAGTTGTACTCAGATGCTAGATGAACAAGTACATAATTGACATAGCATAAAACTAATTATTGTTGTATGGATGGATCTGAAACACAAGTGAATTCCAATACAGTTCGAAAAAAGGAAAATCAACAAGACATACA</genome_strand>
        <mrna_strand>GAAATGATTGTTCATTCCAGCAATTTACTGGTGGTTAAAGCTACACGGAATGACATTAGTGATGTCATTTTTGTCAAATCTTGTATAGCATGCAGTGAAGTTACAATATCATCTATCCCATCTCATCTGAAACAGTTAAACCTCTACTTGGAAACTGCAGAG............................................................................GTTGCATTAATGGCTGGTTTAGTTTCTAACTCAGATGGACTTGTTGATTCAGCATTGAGGTGCTTGCATAATGTTGACTTATTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGGATGCCCAAGGACATTGATGGGTTTCAATCAACATTATGCAAATTTTGCAGTCTTATTGTTATGATTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGGCAATGACTCTTTGTTCTATTGTGATCAACAATATCTGCAAGAGCTTTCTTCATTTTCTGCAGTTCTTCTTCAGAGCTTAATTGATACTGTTGTACAAGAACCAATACAG..........................................................................................GCTGCCCGAGGAAATCTCGCACTTGATGCTTGCAATGCTATTGCATCTTCTTTTGGA.............................................................................................................................................................................................................................................................GTATGTCAAGGAGCATCAGATTTTTCCTCCAAGCTGGTCGAAACTGCCAAGCTGTCTTTGAGCTCTAACAACAAATATCTTCAGTCTACAATAGAGTTTCTCAACAACCGTGGACTTGTGCAAAGGGGAGAGACGTAAAAAGCAGGAAATAACATGTGTTGTGTTTGCTGTTGTTAAAAAGAAATCACTTTTTGTCAAATTTTACTTCACTTGTCCCCAACTGGAGATAAATATCAACTAGGCAAAATGAAGAGAGTTTTTAGATGTTTTGGAAATTTCCAAAGAAATGGTAGCGCCTTCCTTGGGTATATTTGACATGGAAGAGAAGTAGAATGATTAAATCAAGCAATATACTTTTTCTCTTAACATGGAAGCGGGAAGGGACCTTTCTAAGAAGGGCTTGAGACCTATGAATACACATTTAAGTGTTGCTATTACATATTTCATCTCTAATAATAGATAGATCCTG................................................................................................................................TTAAAAAAAAAAAAAAAAAAC-TGAGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582146" ref_strand="+" ref_description="SGN-U582146 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205327|gb|ABI34342.1| (e_value=2e-13) Polyprotein,; ">
      <seq>gattccaatgaccagcacttggacagtccataaatagacttacaacacttacatgattaacaatgtcaggagtcactacaaggtagttcaacatactaaccagtcacctatatgtttcaggatcactaaggggctcccctatctttgcaggagctcccctatcttggcagaagcttagcatttgggtccataagagtgtgaattgagcaagagcccttccatacggaaatgtctacttcctgttattcccgtctcctcaagaatgtctagtacatattctgttgtgaattgacaatacctgacttagacagagcaaactcaatacctagaaaatacttcaatccaggaaacccttagtttggaagtgctgaaagatatattgcttcaatccagtgataccatcttgatcattgccaataatgactatatcaaacataacccactaagttgattcaaagacttaagagaagaatactgtataaaactcataatgatcagttgcactaaaattcatgccaactgcttaattgagatgaacttaccaaatcaggcttgaggggactgttttagacgagaaagtgatcgtcgcaataagtgactcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="30395" stop="31597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30694" g_stop="31297" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U582146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30694" e_stop="31297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCAATGACCAGCACTTGGACAGTCCATAAATAGACTTACAACACTTACATGATTAACAATGTCAGGAGTCACTACAAGGTAGTTCAACATACTAACCAGTCACCTATATGTTTCAGGATCACTAAGGGGCTCCCCTATCTTTGCAGGAGCTCCCCTATCTTGGCAGAAGCTTAGCATTTGGGTCCATAAGAGTGTGAATTGAGCAAGAGCCCTTCCATACGGAAATGTCTACTTCCTGTTATTCCCGTCTCCTCAAGAATGTCTAGTACATATTCTGTTGTGAATTGACAATACCTGACTTAGACAGAGCAAACTCAATACCTAGAAAATACTTCAATCCAGGAAACCCTTAGTTTGGAAGTGCTGAAAGATATATTGCTTCAATCCAGTGATACCATCTTGATCATTGCCAATAATGACTATATCAAACATAACCCACTAAGTTGATTCAAAGACTTAAGAGAAGAATACTGTATAAAACTCATAATGATCAGTTGCACTAAAATTCATGCCAACTGCTTAATTGAGATGAACTTACCAAATCAGGCTTGAGGGGACTGTTTTAGACGAGAAAGTGATCGTCGCAATAAGTGACTCCCC</genome_strand>
        <mrna_strand>GATTCCAATGACCAGCACTTGGACAGTCCATAAATAGACTTACAACACTTACATGATTAACAATGTCAGGAGTCACTACAAGGTAGTTCAACATACTAACCAGTCACCTATATGTTTCAGGATCACTAAGGGGCTCCCCTATCTTTGCAGGAGCTCCCCTATCTTGGCAGAAGCTTAGCATTTGGGTCCATAAGAGTGTGAATTGAGCAAGAGCCCTTCCATACGGAAATGTCTACTTCCTGTTATTCCCGTCTCCTCAAGAATGTCTAGTACATATTCTGTTGTGAATTGACAATACCTGACTTAGACAGAGCAAACTCAATACCTAGAAAATACTTCAATCCAGGAAACCCTTAGTTTGGAAGTGCTGAAAGATATATTGCTTCAATCCAGTGATACCATCTTGATCATTGCCAATAATGACTATATCAAACATAACCCACTAAGTTGATTCAAAGACTTAAGAGAAGAATACTGTATAAAACTCATAATGATCAGTTGCACTAAAATTCATGCCAACTGCTTAATTGAGATGAACTTACCAAATCAGGCTTGAGGGGACTGTTTTAGACGAGAAAGTGATCGTCGCAATAAGTGACTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U568072" ref_strand="+" ref_description="SGN-U568072 Tomato 200607#2 [67 ESTs aligned] (*GB) gi|4210332|emb|CAA11553.1| (e_value=4e-174) 2-oxoglutarate dehydrogenase E2 subunit [Arabidopsis thaliana]; (*ATH) AT5G55070.1 (e_value=8e-176)  Symbol: None | 2-oxoacid dehydrogenase family protein, similar to SP:Q01205 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Rattus norvegicus}; contains Pfam profiles PF0... ; (*SWP) sp|Q869Y7|ODO2_DICDI (e_value=4e-100) Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB; ">
      <seq>aaagaatagtctgaataataagaagaataaaaaagcaaagctgctgttggaagtacgaacttgttctcccttaagactttcctttctcctaaaccctacaccattgattctttaggaccaaatctacgatgctgggcgttttaaggcgcaaggttgcttctgcttcgggtttagggaaatctatgtatgcagttcgacctacctctagaatttcatctactgcaactgaagagatattacttcttcctatacaatgcggtcatgctcggcaattcagtcatcttgttttacctggatgctcagtgaacatgaggccagataggggagctgtggttaattttcactcaagtctatcacaacagatttgcatcaggcctttttgttcaaatagtggtgatctggtcgatgctgttgttccttatatgggcgaatccataagcgatggcacactggctaaattgctgaagaatcctggtgacaaagtagaagttgatgagccaattgctcagattgaaacagacaaggtaacaattgatgtaaccagtcctgaggccggtgtaatccaaaagtttgtagctaaggaaggagatactgtggaaccaggcttcaaggttgctatcatttcaaaatccggtgagggtgtggagagtgtagatcatgttgctccttctgagaagccatctgaaaaagaagctctaaagccaacttctcccattcaagagaaaaaggtggaagaggtgaaatccaaacttgaggtggctcctgtgaaggagaattctaaggcaacttcaccgccccctaaacggtctgctacagaaccccaacttccacccaaagaacgggaaagacgagttcccatgactaggctcaggaaaagagttgccactcgattgaaagattctcagaacaccttcgcattgttgactacattcaatgaagttgatatgacaaatttgatgaagctccgatctgagtacaaagacacgtttgttgaaaagcacggtgtgaagttaggactcatgtccggatttgtgaaggcagctgttagtgcactccagaatcaacctatagtaaatgcagttattgatggtgatgacatcatatatcgggactatgtagacatcagtatagctgttggcaccccaaagggtctggttgtacctgttctccgcgacgttgaccggatgaattttgctgagatagaaaagacaataaacgagcttgctaagaaggcaactaatggaaccatctctattgatgaaatggctggaggatcgtttacaatatccaatggtggtgtgtatggaagtcttctaagtactcccatcataaatcctcctcagtctgctatcttgggaatgcattcaatagtgaatcgcccaatggttgttggaggcgtcattgtctcaagaccaatgatgtacattgcgctgacatatgatcataggctgattgatggaagagaggcagtttactttttgagaaggattaaagatgtggtagaagatccacgccgcctactccttgatgtttgaagatttaagatatacaaccatccgtggcttttgatttgacttttcgtggtatacccaagtgtttgcgcaagctgaaaaccagaaaataaacgtttgtcaaagttattgaggcctttgacattgcttttgtccctgattgtttaatcaagttgcagcaaatctacatgcaaatagagatatgtaacaaacaattcaatattcatccttttccacaactcttgtatgtttttctcatgatgcccaaggattgcttgaatacattttaccagcttgatgtctttatgcattttgtatgtcttgttgattttccttttttcgaactgtattggaattcacttgtgtttcagatccatccatacaacaataattagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="47857" stop="40555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47557" g_stop="47443" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47442" i_stop="47368" i_length="75">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47367" g_stop="47316" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="167" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47315" i_stop="47223" i_length="93">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47222" g_stop="47157" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="233" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47156" i_stop="46091" i_length="1066">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46090" g_stop="46030" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="294" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46029" i_stop="45949" i_length="81">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45948" g_stop="45921" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="322" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45920" i_stop="44971" i_length="950">
            <donor d_prob="0.388" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44970" g_stop="44900" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="393" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44899" i_stop="43989" i_length="911">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43988" g_stop="43914" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="468" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43913" i_stop="43841" i_length="73">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43840" g_stop="43785" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="524" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43784" i_stop="43704" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43703" g_stop="43659" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="569" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43658" i_stop="43551" i_length="108">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43550" g_stop="43269" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="851" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="43268" i_stop="43167" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="43166" g_stop="43072" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="946" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="43071" i_stop="42156" i_length="916">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="42155" g_stop="42065" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1037" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="42064" i_stop="41980" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="41979" g_stop="41869" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1148" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="41868" i_stop="41710" i_length="159">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="41709" g_stop="41515" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1149" r_stop="1343" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="41514" i_stop="41422" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="41421" g_stop="40855" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1344" r_stop="1910" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U568072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47557" e_stop="47443"/>
          <exon e_start="47367" e_stop="47316"/>
          <exon e_start="47222" e_stop="47157"/>
          <exon e_start="46090" e_stop="46030"/>
          <exon e_start="45948" e_stop="45921"/>
          <exon e_start="44970" e_stop="44900"/>
          <exon e_start="43988" e_stop="43914"/>
          <exon e_start="43840" e_stop="43785"/>
          <exon e_start="43703" e_stop="43659"/>
          <exon e_start="43550" e_stop="43269"/>
          <exon e_start="43166" e_stop="43072"/>
          <exon e_start="42155" e_stop="42065"/>
          <exon e_start="41979" e_stop="41869"/>
          <exon e_start="41709" e_stop="41515"/>
          <exon e_start="41421" e_stop="40855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATAGTCTGAATAATAAGAAGAATAAAAAAGCAAAGCTGCTGTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAGGTCAAAAACTTCTACTCGATTTTCATGCAAGAGATCTACTTTATCGCCACCATCTAAACTTTTTTTTTTTAACAGGACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCGGTATGTTATATTTTTTTTTGAAGTTGTGTACTTTGTTCGGAGCCTTATGATGAAATGAATATGTGGAGTTTTTTGTTTTATATTTTTGGGCAGGGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAGGTAATGTATATTTATAGCTGGATGTAAATGTAAATGTTTCTTATCTTATTATCTTATAAAAAAAAAATGATTTTCGATTTTTGCTGAATTCTATTTTGGAACATTTTTACCTGAAATTCTTGCACCTATGACATTTGGTCAGTTTTAAGATAAATACAGTATTGAGCTAGCACCCATGGCAACGAGCTTTTAGACCTTCGCTAGAGGTGTCTGGGAGAATAGATGGAGTGGTCAATGAAGTGAATTAAGCACCATGGTGTCTTAGGTTCAAATCCAAGCAAAACACAAAAACACGAGGTGATTTCATTTTCATCCGTATTCCTTCCTTGGCAGTATGGGAAGTCTATATCTATAAGGAAGTCTCGGATGCCAACTGTCCTAGACTTGGTGGACAGAGTTACCTAATACTTGTTGTTGGTGGGAGGTGAAAAATATTATATAGATTGGTTGAGAATCAAGATGCGTGCGAGCTGGCTCGGATATCATGGTTATCAAAAAAGATGTTCATTATTGAGCTATCGGGTTTAAGTACTCGATCATCATATGTCAATAGTCTATCTTGGCCTATGAAATGACAACATTGTTTTGATTAAGAATATCAGGTAATCCAAACAGAGGAGTACTGTTCATCACATTGATTTCCTTTAATTTAGTAGGTTTTTAGGTTGGTTTGCTAAATAGGTAAATTGGTTTGGAACTGTATGATGTCAGTCCTTAGACCTCACCTGCAGTTTACGTTATCATGTCTGTTTTCCTTCTACTTCTCGTTATCTACTGTTTTATTTCTAGCTTTCGGCTATGATTGTGTTCTAAATTAGGTAGTTTCAACATGTAAAATTTTTTTTTTAGGTAGTTTCCACAGTTCATGATATGATGTTTTGAGATAAACCATCTGATAGTTATCCAGGCAGTATATATATATATGTATTGTCCAAAAATTCCGGGATGCTATTTGTCTTTTGAAATTCCAGTTTCATATATTGAACTGGATATGCTCCTTATTTTTTCTTGTATACTTTGTTCTATTTGAGATTTTAGGCATAACATACTTTTCACATGTCAACAGATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTGGTAATTGTGGTGGCTCAATCACAAAATTCAAAATATTCATCTCATGTTGCTATTGTTACTAACTCCTAATTTGTGATACAGGATGCTCAGTGAACATGAGGCCAGATAGGTCAGTAACCATTTTCATTACTAAGAGACCTGCTGTGTAAAGGTGTACGGCATGAAAAAATGCACCATATGTTTCCTCCAATTAGTATTCCCATTTTCCTCGTAGGACAACCATGCTTTAGTTCTATGTTTGAGGTGAAACCAACAATTGTTTTTTTAATCTCTGCATATCTTAGTTTTGTTGTTAGCAATACAACTTGGTCATTGTTTTTTGTCATTATACTTTGGTAGAAGACCAGACCTTGTTTTTGGCAGCTGCCTATGTGTCTTCCTGTACATAAATGAGAAATCAAGAGCTGAGGCAGTTCGAGGCCTCACTTGTTTACATTAGGATTAGGACTTCTTAATGTAAATGATTAAAATTGTCTCTAGATCTAAACACTAATTGATTAAGATTGTTTATTTTCTAACATCTCAATATGCATAATTTTTTATTTTGTAAAATAATAAAAAAATCATTATTTGATATAAAAATGAAACATTTATGCTCTTAAGCTGATCTTGAAAAGTGGATCTTAAAAAGCAATATTAATCTGCTTTAGTGTGTGTGTCTGTACATATATTATCTATTATTCAGCAATTGACCTGTTATCAATAATGTAGAACTGACCACAAAGATATTTCACTTTTATACCCTTAAAGTCATTCTTAAATTGTAGTTTAAAGAAAGGAAAACAGAAAAACGCTGGATATGCAGTAAATTAACTGAAATCATTTTTGATTATTATTCTCCTATTTTCATCACCAAACTTATAACAAAAGATGAGATAATACGCCTTGAAGTATGTGCACACTTTCTTATGCTGTACCCTGTTATGATGTAATTCTTTCTTTGGTGGATGTTAGTGATAAAGATCAAGTAAAATTGATGATTATGTTGCATTTTGCTGCTCCTACTCTTCTTTCCCCCCTTTTTTTGTTGGTCCACATGAATTGTTTTGCTGTCTGCAGGGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTGGTATATCTTCTCTAATAGTGATTTACCTTGTCTTGTCTTGAATCCTGATAATAATGCAGCATCTGCTAATGTACAACATGTAGCTATTTAAAATTAAAATGTCTTCTCTAGTTTTGGTCACCTGAAATGATTATTACCTATTCATAATCTTTGAGAAGATACCATTTCCTTTTCTTTTTTATTATTGAGATCTTATATAGATATTAATTGAACTTTGCAGGTTCTTTTGTTATTTATATTGTGATATCTAACTTTTAACATGTTAATCACGATAATCTGCAAATTCCTATTTAAGATTGAATGGTTAATTTGCATCGTCTATCTAAACATACAGTGATAGCTACTACTTGGAATGGAGGTGAAGTTACATATTCATTTGAAATTTAAAATTAATTTATACTCCATATGTTGTGAAATGATGTATTGGTTGGATGTTTACTCTTATTCATCTTCTTGTTTCATTTCTAGTCTTCTCTTCAGTGCTATCCCTTTTAGTTTTTCTATTGGGTTTGGTTGGGATTAAATATGAATACACAGGAACATTAGGACGTTTACCCTTCTATTTTCATTATTAGTACATAAATCCAGCTGATGGATATTTTGAAATACGTTAATCCAAAGTGGAGGGATGAGCTATAAATGTACTGCAATAATGGAGAATAATGATGACTACCATTTTTTTGTCTAGCAAGTTCATAATAGACACTTCTAACCCATGTATTCATTGTGTGCACAATTAGATGTCTCTCACTTGTTGAATGAATGACTATCAGCGAGATGACTGGCAATTTTATTAATAGTTCAGAAATTGCTTAAATTGCTGTGTCTTACTGTGATCAATTGACTTTGCAATGTAATACAATTACTAACATTTTGTGCCTTCGTTTGCCCCATCTGAATTTCTTCCAAAGGTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGAGTATGTTTTTTGTTAGTGTCCACATATTTTTTCTTTATAACTTGGTTATTTTAATCTCATTCTTTTTGTGCAGATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAGGTACTTGAACATGTTTAACTAATTAAGTCCAATTATTTTTTGTGGGTTTCTGTGGAGGTTAATGGCTTATATGTCATCCAGGTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAGGTAGAATATCGTTTTAATACTGGAACTCTTCATTTTCTTTCCCAGGTTTCTTATTCATTTGTTATTTTGATATCAATTGATTTTGCATTTGCTTTGGAACATTGATAGTTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGGCTTCAAGGTTGCTATCATTTCAAAATCCGGTGAGGGTGTGGAGAGTGTAGATCATGTTGCTCCTTCTGAGAAGCCATCTGAAAAAGAAGCTCTAAAGCCAACTTCTCCCATTCAAGAGAAAAAGGTGGAAGAGGTGAAATCCAAACTTGAGGTGGCTCCTGTGAAGGAGAATTCTAAGGCAACTTCACCGCCCCCTAAACGGTCTGCTACAGAACCCCAACTTCCACCCAAAGAACGGGAAAGACGAGTAAGTCTCTTACACTTTTGAAAGCTTTTTGTGATGACACTATTCATTTGAGCATTCGTCTCAATTACTGAGTAGCAACATCTGAATCCCTCTTGATGATAGGTTCCCATGACTAGGCTCAGGAAAAGAGTTGCCACTCGATTGAAAGATTCTCAGAACACCTTCGCATTGTTGACTACATTCAATGAAGTTGATATGTAAGTTTGGATTGTTATTTTGAAACAAATTTTTGAGCTTCTTTGTCATATGTTGTAGCTCAACCCTTCTGTTATCAGAAAGATAACCAAGTCTTTTGACAACTTGATCTTTGTTGCATGGATTCATGTAAAGGTACATATTCAGTATGTGTCTGGTATTGACTTGTTAATTTTTGCCAACTTTGTATTTTGAAGAAGGGAAAAGGACAAATATACCCCGGGACTATCGTAAACGGGGTATGCAGATACCCCGGTCATACTTTTGGAACATTGGTGCCCTTGCCATCCAAAAACTAGAGCATATATGCCCTTCACTCTAATGGATGACAAAATAGGGACACGTAGTGCAATCTTATCCTTCGATCCAATATTTAATAAATGTCGATCGGTGGATAAGATTATGACACATGTATGTCCCTTAGTATAAAGGGTATATATGTAATAGTTTTTGGACGGCAGGGCACCAATGTCTCAAAAGTATGACGGAGGGTATCTGCATACCGTAAATGGTATGCACGACAATTTGGATATATTTGTCTTTTTCCCCTTTGAAGAATCCACATGAAAAACCATGCTGATATCACACCTGTTTGACATTGTTACGCCAGTGAAAATGGAAGGGTCCATATATGATGTAACAGGTTTTATAGATGAGTAAAACTGGTTTACTTGAGTGATTTAGGAGGTCCAAATCTTAGTACTTCTTTCTTTCTGGGGATATTATTTTGTAGCTAGTGACATTTGAGGTTATAACTTAAGCATCTTTCTCTATTTAATATCCTGTAAGTAGAAACAGTTCTGTTTCTGTTCTTCTGATACGTTAGAGATGTAGGAGCCATTTGTCATAGCCCATGAAGTGAAGCTACACACCCGTTATATTAGTTGTATTCACTTTCTTCCATCTTTCTAATTGCAGGACAAATTTGATGAAGCTCCGATCTGAGTACAAAGACACGTTTGTTGAAAAGCACGGTGTGAAGTTAGGACTCATGTCCGGATTTGTGAAGGTATGAAAAGCATCAATGTTGATAATATTTTTAGTATATTTTCGTTGACTAACTACAGTGGAAAAGATCTTATACTAAATTTCAGGCAGCTGTTAGTGCACTCCAGAATCAACCTATAGTAAATGCAGTTATTGATGGTGATGACATCATATATCGGGACTATGTAGACATCAGTATAGCTGTTGGCACCCCAAAGGCATGCGCACCCCTCTGTTTGACTTCAATATTTTGAATTAAATTGACAGTTTTTAGACAATCTGTAATGTGATGGCTCGAATTTGTCCTTTTACCTGTTTTTGAGACCCTACTCTCTGTTTATTTGCCAATGTTCAAGTATCCTTTTCTAATTGTTCAGGGTCTGGTTGTACCTGTTCTCCGCGACGTTGACCGGATGAATTTTGCTGAGATAGAAAAGACAATAAACGAGCTTGCTAAGAAGGCAACTAATGGAACCATCTCTATTGATGAAATGGCTGGAGGATCGTTTACAATATCCAATGGTGGTGTGTATGGAAGTCTTCTAAGTACTCCCATCATAAATCCTCCTCAGGTACTTGTCCTTATTGAGACATCATGGTTTAAACTTTGAAATTCCCCAATAGATCTATCTGACAAGTGATGTTTTTGTTGCTTGATTTTGTAGTCTGCTATCTTGGGAATGCATTCAATAGTGAATCGCCCAATGGTTGTTGGAGGCGTCATTGTCTCAAGACCAATGATGTACATTGCGCTGACATATGATCATAGGCTGATTGATGGAAGAGAGGCAGTTTACTTTTTGAGAAGGATTAAAGATGTGGTAGAAGATCCACGCCGCCTACTCCTTGATGTTTGAAGATTTAAGATATACAACCATCCGTGGCTTTTGATTTGACTTTTCGTGGTATACCCAAGTGTTTGCGCAAGCTGAAAACCAGAAAATAAACGTTTGTCAAAGTTATTGAGGCCTTTGACATTGCTTTTGTCCCTGATTGTTTAATCAAGTTGCAGCAAATCTACATGCAAATAGAGATATGTAACAAACAATTCAATATTCATCCTTTTCCACAACTCTTGTATGTTTTTCTCATGATGCCCAAGGATTGCTTGAATACATTTTACCAGCTTGATGTCTTTATGCATTTTGTATGTCTTGTTGATTTTCCTTTTTTCGAACTGTATTGGAATTCACTTGTGTTTCAGATCCATCCATACAACAATAATTAGTTTT</genome_strand>
        <mrna_strand>AAAGAATAGTCTGAATAATAAGAAGAATAAAAAAGCAAAGCTGCTGTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAG...........................................................................GACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCG.............................................................................................GGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTG.................................................................................GATGCTCAGTGAACATGAGGCCAGATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGA.........................................................................ATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAG.................................................................................GTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAG............................................................................................................TTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGGCTTCAAGGTTGCTATCATTTCAAAATCCGGTGAGGGTGTGGAGAGTGTAGATCATGTTGCTCCTTCTGAGAAGCCATCTGAAAAAGAAGCTCTAAAGCCAACTTCTCCCATTCAAGAGAAAAAGGTGGAAGAGGTGAAATCCAAACTTGAGGTGGCTCCTGTGAAGGAGAATTCTAAGGCAACTTCACCGCCCCCTAAACGGTCTGCTACAGAACCCCAACTTCCACCCAAAGAACGGGAAAGACGA......................................................................................................GTTCCCATGACTAGGCTCAGGAAAAGAGTTGCCACTCGATTGAAAGATTCTCAGAACACCTTCGCATTGTTGACTACATTCAATGAAGTTGATAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATTTGATGAAGCTCCGATCTGAGTACAAAGACACGTTTGTTGAAAAGCACGGTGTGAAGTTAGGACTCATGTCCGGATTTGTGAAG.....................................................................................GCAGCTGTTAGTGCACTCCAGAATCAACCTATAGTAAATGCAGTTATTGATGGTGATGACATCATATATCGGGACTATGTAGACATCAGTATAGCTGTTGGCACCCCAAAG...............................................................................................................................................................GGTCTGGTTGTACCTGTTCTCCGCGACGTTGACCGGATGAATTTTGCTGAGATAGAAAAGACAATAAACGAGCTTGCTAAGAAGGCAACTAATGGAACCATCTCTATTGATGAAATGGCTGGAGGATCGTTTACAATATCCAATGGTGGTGTGTATGGAAGTCTTCTAAGTACTCCCATCATAAATCCTCCTCAG.............................................................................................TCTGCTATCTTGGGAATGCATTCAATAGTGAATCGCCCAATGGTTGTTGGAGGCGTCATTGTCTCAAGACCAATGATGTACATTGCGCTGACATATGATCATAGGCTGATTGATGGAAGAGAGGCAGTTTACTTTTTGAGAAGGATTAAAGATGTGGTAGAAGATCCACGCCGCCTACTCCTTGATGTTTGAAGATTTAAGATATACAACCATCCGTGGCTTTTGATTTGACTTTTCGTGGTATACCCAAGTGTTTGCGCAAGCTGAAAACCAGAAAATAAACGTTTGTCAAAGTTATTGAGGCCTTTGACATTGCTTTTGTCCCTGATTGTTTAATCAAGTTGCAGCAAATCTACATGCAAATAGAGATATGTAACAAACAATTCAATATTCATCCTTTTCCACAACTCTTGTATGTTTTTCTCATGATGCCCAAGGATTGCTTGAATACATTTTACCAGCTTGATGTCTTTATGCATTTTGTATGTCTTGTTGATTTTCCTTTTTTCGAACTGTATTGGAATTCACTTGTGTTTCAGATCCATCCATACAACAATAATTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588589" ref_strand="+" ref_description="SGN-U588589 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157330022|emb|CAO43356.1| (e_value=1e-45) unnamed; (*ATH) AT5G55070.1 (e_value=3e-41)  Symbol: None | 2-oxoacid dehydrogenase family protein, similar to SP:Q01205 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Rattus norvegicus}; contains Pfam profiles PF0... ; (*SWP) sp|Q8CSL9|ODO2_STAES (e_value=4e-15) Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB; ">
      <seq>tgtttcggcacgaggtccttctggaaggcaaaagcaaagaatagtctgaataataagaagaataaaaaagcaaagctgctgttggaagtacgaacttgttctcccttaagactttcctttctcctaaaccctacaccattgattctttaggaccaaatctacgatgctgggcgttttaaggcgcaaggttgcttctgcttcgggtttagggaaatctatgtatgcagttcgacctacctctagaatttcatctactgcaactgaagagatattacttcttcctatacaatgcggtcatgctcggcaattcagtcatcttgttttacctggatgctcagtgaacatgaggccagataggggagctgtggttaattttcactcaagtctatcacaacagatttgcatcaggcctttttgttcaaatagtggtgatctggtcgatgctgttgttccttatatgggcgaatccataagcgatggcacactggctaaattgctgaagaatcctggtgacaaagtagaagttgatgagccaattgctcagattgaaacagacaaggtaacaattgatgtaaccagtcctgaggccggtgtaatccaaaagtttgtagctaaggaaggagatactgtggaaccaggcttcaaggttgctatcatttcaaaatccggtgagggtgtggagagtgtaaatcatgttgctccttctgagagccatctgaaaaagaagctctaaagccaacttctcccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="47883" stop="43103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47592" g_stop="47443" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47442" i_stop="47368" i_length="75">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47367" g_stop="47316" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="202" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47315" i_stop="47223" i_length="93">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47222" g_stop="47157" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="268" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47156" i_stop="46091" i_length="1066">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46090" g_stop="46030" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="329" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46029" i_stop="45949" i_length="81">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45948" g_stop="45921" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="357" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45920" i_stop="44971" i_length="950">
            <donor d_prob="0.388" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44970" g_stop="44900" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="428" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44899" i_stop="43989" i_length="911">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43988" g_stop="43914" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="503" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43913" i_stop="43841" i_length="73">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43840" g_stop="43785" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="559" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43784" i_stop="43704" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43703" g_stop="43659" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="604" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43658" i_stop="43551" i_length="108">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43550" g_stop="43403" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="751" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U588589" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47592" e_stop="47443"/>
          <exon e_start="47367" e_stop="47316"/>
          <exon e_start="47222" e_stop="47157"/>
          <exon e_start="46090" e_stop="46030"/>
          <exon e_start="45948" e_stop="45921"/>
          <exon e_start="44970" e_stop="44900"/>
          <exon e_start="43988" e_stop="43914"/>
          <exon e_start="43840" e_stop="43785"/>
          <exon e_start="43703" e_stop="43659"/>
          <exon e_start="43550" e_stop="43403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTATTCCTCACCTCCTTCTGGAAGGCAAAAGCAAAGAATAGTCTGAATAATAAGAAGAATAAAAAAGCAAAGCTGCTGTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAGGTCAAAAACTTCTACTCGATTTTCATGCAAGAGATCTACTTTATCGCCACCATCTAAACTTTTTTTTTTTAACAGGACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCGGTATGTTATATTTTTTTTTGAAGTTGTGTACTTTGTTCGGAGCCTTATGATGAAATGAATATGTGGAGTTTTTTGTTTTATATTTTTGGGCAGGGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAGGTAATGTATATTTATAGCTGGATGTAAATGTAAATGTTTCTTATCTTATTATCTTATAAAAAAAAAATGATTTTCGATTTTTGCTGAATTCTATTTTGGAACATTTTTACCTGAAATTCTTGCACCTATGACATTTGGTCAGTTTTAAGATAAATACAGTATTGAGCTAGCACCCATGGCAACGAGCTTTTAGACCTTCGCTAGAGGTGTCTGGGAGAATAGATGGAGTGGTCAATGAAGTGAATTAAGCACCATGGTGTCTTAGGTTCAAATCCAAGCAAAACACAAAAACACGAGGTGATTTCATTTTCATCCGTATTCCTTCCTTGGCAGTATGGGAAGTCTATATCTATAAGGAAGTCTCGGATGCCAACTGTCCTAGACTTGGTGGACAGAGTTACCTAATACTTGTTGTTGGTGGGAGGTGAAAAATATTATATAGATTGGTTGAGAATCAAGATGCGTGCGAGCTGGCTCGGATATCATGGTTATCAAAAAAGATGTTCATTATTGAGCTATCGGGTTTAAGTACTCGATCATCATATGTCAATAGTCTATCTTGGCCTATGAAATGACAACATTGTTTTGATTAAGAATATCAGGTAATCCAAACAGAGGAGTACTGTTCATCACATTGATTTCCTTTAATTTAGTAGGTTTTTAGGTTGGTTTGCTAAATAGGTAAATTGGTTTGGAACTGTATGATGTCAGTCCTTAGACCTCACCTGCAGTTTACGTTATCATGTCTGTTTTCCTTCTACTTCTCGTTATCTACTGTTTTATTTCTAGCTTTCGGCTATGATTGTGTTCTAAATTAGGTAGTTTCAACATGTAAAATTTTTTTTTTAGGTAGTTTCCACAGTTCATGATATGATGTTTTGAGATAAACCATCTGATAGTTATCCAGGCAGTATATATATATATGTATTGTCCAAAAATTCCGGGATGCTATTTGTCTTTTGAAATTCCAGTTTCATATATTGAACTGGATATGCTCCTTATTTTTTCTTGTATACTTTGTTCTATTTGAGATTTTAGGCATAACATACTTTTCACATGTCAACAGATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTGGTAATTGTGGTGGCTCAATCACAAAATTCAAAATATTCATCTCATGTTGCTATTGTTACTAACTCCTAATTTGTGATACAGGATGCTCAGTGAACATGAGGCCAGATAGGTCAGTAACCATTTTCATTACTAAGAGACCTGCTGTGTAAAGGTGTACGGCATGAAAAAATGCACCATATGTTTCCTCCAATTAGTATTCCCATTTTCCTCGTAGGACAACCATGCTTTAGTTCTATGTTTGAGGTGAAACCAACAATTGTTTTTTTAATCTCTGCATATCTTAGTTTTGTTGTTAGCAATACAACTTGGTCATTGTTTTTTGTCATTATACTTTGGTAGAAGACCAGACCTTGTTTTTGGCAGCTGCCTATGTGTCTTCCTGTACATAAATGAGAAATCAAGAGCTGAGGCAGTTCGAGGCCTCACTTGTTTACATTAGGATTAGGACTTCTTAATGTAAATGATTAAAATTGTCTCTAGATCTAAACACTAATTGATTAAGATTGTTTATTTTCTAACATCTCAATATGCATAATTTTTTATTTTGTAAAATAATAAAAAAATCATTATTTGATATAAAAATGAAACATTTATGCTCTTAAGCTGATCTTGAAAAGTGGATCTTAAAAAGCAATATTAATCTGCTTTAGTGTGTGTGTCTGTACATATATTATCTATTATTCAGCAATTGACCTGTTATCAATAATGTAGAACTGACCACAAAGATATTTCACTTTTATACCCTTAAAGTCATTCTTAAATTGTAGTTTAAAGAAAGGAAAACAGAAAAACGCTGGATATGCAGTAAATTAACTGAAATCATTTTTGATTATTATTCTCCTATTTTCATCACCAAACTTATAACAAAAGATGAGATAATACGCCTTGAAGTATGTGCACACTTTCTTATGCTGTACCCTGTTATGATGTAATTCTTTCTTTGGTGGATGTTAGTGATAAAGATCAAGTAAAATTGATGATTATGTTGCATTTTGCTGCTCCTACTCTTCTTTCCCCCCTTTTTTTGTTGGTCCACATGAATTGTTTTGCTGTCTGCAGGGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTGGTATATCTTCTCTAATAGTGATTTACCTTGTCTTGTCTTGAATCCTGATAATAATGCAGCATCTGCTAATGTACAACATGTAGCTATTTAAAATTAAAATGTCTTCTCTAGTTTTGGTCACCTGAAATGATTATTACCTATTCATAATCTTTGAGAAGATACCATTTCCTTTTCTTTTTTATTATTGAGATCTTATATAGATATTAATTGAACTTTGCAGGTTCTTTTGTTATTTATATTGTGATATCTAACTTTTAACATGTTAATCACGATAATCTGCAAATTCCTATTTAAGATTGAATGGTTAATTTGCATCGTCTATCTAAACATACAGTGATAGCTACTACTTGGAATGGAGGTGAAGTTACATATTCATTTGAAATTTAAAATTAATTTATACTCCATATGTTGTGAAATGATGTATTGGTTGGATGTTTACTCTTATTCATCTTCTTGTTTCATTTCTAGTCTTCTCTTCAGTGCTATCCCTTTTAGTTTTTCTATTGGGTTTGGTTGGGATTAAATATGAATACACAGGAACATTAGGACGTTTACCCTTCTATTTTCATTATTAGTACATAAATCCAGCTGATGGATATTTTGAAATACGTTAATCCAAAGTGGAGGGATGAGCTATAAATGTACTGCAATAATGGAGAATAATGATGACTACCATTTTTTTGTCTAGCAAGTTCATAATAGACACTTCTAACCCATGTATTCATTGTGTGCACAATTAGATGTCTCTCACTTGTTGAATGAATGACTATCAGCGAGATGACTGGCAATTTTATTAATAGTTCAGAAATTGCTTAAATTGCTGTGTCTTACTGTGATCAATTGACTTTGCAATGTAATACAATTACTAACATTTTGTGCCTTCGTTTGCCCCATCTGAATTTCTTCCAAAGGTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGAGTATGTTTTTTGTTAGTGTCCACATATTTTTTCTTTATAACTTGGTTATTTTAATCTCATTCTTTTTGTGCAGATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAGGTACTTGAACATGTTTAACTAATTAAGTCCAATTATTTTTTGTGGGTTTCTGTGGAGGTTAATGGCTTATATGTCATCCAGGTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAGGTAGAATATCGTTTTAATACTGGAACTCTTCATTTTCTTTCCCAGGTTTCTTATTCATTTGTTATTTTGATATCAATTGATTTTGCATTTGCTTTGGAACATTGATAGTTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGGCTTCAAGGTTGCTATCATTTCAAAATCCGGTGAGGGTGTGGAGAGTGTAGATCATGTTGCTCCTTCTGAGAAGCCATCTGAAAAAGAAGCTCTAAAGCCAACTTCTCCCATTC</genome_strand>
        <mrna_strand>TGTTTCGGCACGAGGTCCTTCTGGAAGGCAAAAGCAAAGAATAGTCTGAATAATAAGAAGAATAAAAAAGCAAAGCTGCTGTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAG...........................................................................GACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCG.............................................................................................GGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTG.................................................................................GATGCTCAGTGAACATGAGGCCAGATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGA.........................................................................ATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAG.................................................................................GTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAG............................................................................................................TTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGGCTTCAAGGTTGCTATCATTTCAAAATCCGGTGAGGGTGTGGAGAGTGTAAATCATGTTGCTCCTTCTGAG-AGCCATCTGAAAAAGAAGCTCTAAAGCCAACTTCTCCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588590" ref_strand="+" ref_description="SGN-U588590 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157330022|emb|CAO43356.1| (e_value=9e-33) unnamed; (*ATH) AT5G55070.1 (e_value=3e-31)  Symbol: None | 2-oxoacid dehydrogenase family protein, similar to SP:Q01205 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Rattus norvegicus}; contains Pfam profiles PF0... ; ">
      <seq>ggtggaagtacgaacttgttctcccttaagactttcctttctcctaaaccctacaccattgattctttaggaccaaatctacgatgctgggcgttttaaggcgcaaggttgcttctgcttcgggtttagggaaatctatgtatgcagttcgacctacctctagaatttcatctactgcaactgaagagatattacttcttcctatacaatgcggtcatgctcggcaattcagtcatcttgttttacctggatgctcagtgaacatgaggccagataggggagctgtggttaattttcactcaagtctatcacaacagatttgcatcaggcctttttgttcaaatagtggtgatctggtcgatgctgttgttccttatatgggcgaatccataagcgatggcacactggctaaattgctgaagagtatgttttttgttagtgtccacatattttttctttataacttggttattttaatctcattctttttgtgcagatcctggtgacaaagtagaagttgatgagccaattgctcagattgaaacagacaaggtaacaattgatgtaaccagtcctgaggccggtgtaatccaaaagtttgtagctaaggaaggagatactgtggaaccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="47812" stop="43216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47512" g_stop="47443" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47442" i_stop="47368" i_length="75">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47367" g_stop="47316" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="122" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47315" i_stop="47223" i_length="93">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47222" g_stop="47157" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="188" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47156" i_stop="46091" i_length="1066">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46090" g_stop="46030" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="249" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46029" i_stop="45949" i_length="81">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45948" g_stop="45921" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="277" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45920" i_stop="44971" i_length="950">
            <donor d_prob="0.388" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44970" g_stop="44900" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="348" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44899" i_stop="43989" i_length="911">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43988" g_stop="43785" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="552" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43784" i_stop="43704" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43703" g_stop="43659" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="597" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43658" i_stop="43551" i_length="108">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43550" g_stop="43516" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="632" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U588590" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47512" e_stop="47443"/>
          <exon e_start="47367" e_stop="47316"/>
          <exon e_start="47222" e_stop="47157"/>
          <exon e_start="46090" e_stop="46030"/>
          <exon e_start="45948" e_stop="45921"/>
          <exon e_start="44970" e_stop="44900"/>
          <exon e_start="43988" e_stop="43785"/>
          <exon e_start="43703" e_stop="43659"/>
          <exon e_start="43550" e_stop="43516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAGGTCAAAAACTTCTACTCGATTTTCATGCAAGAGATCTACTTTATCGCCACCATCTAAACTTTTTTTTTTTAACAGGACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCGGTATGTTATATTTTTTTTTGAAGTTGTGTACTTTGTTCGGAGCCTTATGATGAAATGAATATGTGGAGTTTTTTGTTTTATATTTTTGGGCAGGGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAGGTAATGTATATTTATAGCTGGATGTAAATGTAAATGTTTCTTATCTTATTATCTTATAAAAAAAAAATGATTTTCGATTTTTGCTGAATTCTATTTTGGAACATTTTTACCTGAAATTCTTGCACCTATGACATTTGGTCAGTTTTAAGATAAATACAGTATTGAGCTAGCACCCATGGCAACGAGCTTTTAGACCTTCGCTAGAGGTGTCTGGGAGAATAGATGGAGTGGTCAATGAAGTGAATTAAGCACCATGGTGTCTTAGGTTCAAATCCAAGCAAAACACAAAAACACGAGGTGATTTCATTTTCATCCGTATTCCTTCCTTGGCAGTATGGGAAGTCTATATCTATAAGGAAGTCTCGGATGCCAACTGTCCTAGACTTGGTGGACAGAGTTACCTAATACTTGTTGTTGGTGGGAGGTGAAAAATATTATATAGATTGGTTGAGAATCAAGATGCGTGCGAGCTGGCTCGGATATCATGGTTATCAAAAAAGATGTTCATTATTGAGCTATCGGGTTTAAGTACTCGATCATCATATGTCAATAGTCTATCTTGGCCTATGAAATGACAACATTGTTTTGATTAAGAATATCAGGTAATCCAAACAGAGGAGTACTGTTCATCACATTGATTTCCTTTAATTTAGTAGGTTTTTAGGTTGGTTTGCTAAATAGGTAAATTGGTTTGGAACTGTATGATGTCAGTCCTTAGACCTCACCTGCAGTTTACGTTATCATGTCTGTTTTCCTTCTACTTCTCGTTATCTACTGTTTTATTTCTAGCTTTCGGCTATGATTGTGTTCTAAATTAGGTAGTTTCAACATGTAAAATTTTTTTTTTAGGTAGTTTCCACAGTTCATGATATGATGTTTTGAGATAAACCATCTGATAGTTATCCAGGCAGTATATATATATATGTATTGTCCAAAAATTCCGGGATGCTATTTGTCTTTTGAAATTCCAGTTTCATATATTGAACTGGATATGCTCCTTATTTTTTCTTGTATACTTTGTTCTATTTGAGATTTTAGGCATAACATACTTTTCACATGTCAACAGATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTGGTAATTGTGGTGGCTCAATCACAAAATTCAAAATATTCATCTCATGTTGCTATTGTTACTAACTCCTAATTTGTGATACAGGATGCTCAGTGAACATGAGGCCAGATAGGTCAGTAACCATTTTCATTACTAAGAGACCTGCTGTGTAAAGGTGTACGGCATGAAAAAATGCACCATATGTTTCCTCCAATTAGTATTCCCATTTTCCTCGTAGGACAACCATGCTTTAGTTCTATGTTTGAGGTGAAACCAACAATTGTTTTTTTAATCTCTGCATATCTTAGTTTTGTTGTTAGCAATACAACTTGGTCATTGTTTTTTGTCATTATACTTTGGTAGAAGACCAGACCTTGTTTTTGGCAGCTGCCTATGTGTCTTCCTGTACATAAATGAGAAATCAAGAGCTGAGGCAGTTCGAGGCCTCACTTGTTTACATTAGGATTAGGACTTCTTAATGTAAATGATTAAAATTGTCTCTAGATCTAAACACTAATTGATTAAGATTGTTTATTTTCTAACATCTCAATATGCATAATTTTTTATTTTGTAAAATAATAAAAAAATCATTATTTGATATAAAAATGAAACATTTATGCTCTTAAGCTGATCTTGAAAAGTGGATCTTAAAAAGCAATATTAATCTGCTTTAGTGTGTGTGTCTGTACATATATTATCTATTATTCAGCAATTGACCTGTTATCAATAATGTAGAACTGACCACAAAGATATTTCACTTTTATACCCTTAAAGTCATTCTTAAATTGTAGTTTAAAGAAAGGAAAACAGAAAAACGCTGGATATGCAGTAAATTAACTGAAATCATTTTTGATTATTATTCTCCTATTTTCATCACCAAACTTATAACAAAAGATGAGATAATACGCCTTGAAGTATGTGCACACTTTCTTATGCTGTACCCTGTTATGATGTAATTCTTTCTTTGGTGGATGTTAGTGATAAAGATCAAGTAAAATTGATGATTATGTTGCATTTTGCTGCTCCTACTCTTCTTTCCCCCCTTTTTTTGTTGGTCCACATGAATTGTTTTGCTGTCTGCAGGGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTGGTATATCTTCTCTAATAGTGATTTACCTTGTCTTGTCTTGAATCCTGATAATAATGCAGCATCTGCTAATGTACAACATGTAGCTATTTAAAATTAAAATGTCTTCTCTAGTTTTGGTCACCTGAAATGATTATTACCTATTCATAATCTTTGAGAAGATACCATTTCCTTTTCTTTTTTATTATTGAGATCTTATATAGATATTAATTGAACTTTGCAGGTTCTTTTGTTATTTATATTGTGATATCTAACTTTTAACATGTTAATCACGATAATCTGCAAATTCCTATTTAAGATTGAATGGTTAATTTGCATCGTCTATCTAAACATACAGTGATAGCTACTACTTGGAATGGAGGTGAAGTTACATATTCATTTGAAATTTAAAATTAATTTATACTCCATATGTTGTGAAATGATGTATTGGTTGGATGTTTACTCTTATTCATCTTCTTGTTTCATTTCTAGTCTTCTCTTCAGTGCTATCCCTTTTAGTTTTTCTATTGGGTTTGGTTGGGATTAAATATGAATACACAGGAACATTAGGACGTTTACCCTTCTATTTTCATTATTAGTACATAAATCCAGCTGATGGATATTTTGAAATACGTTAATCCAAAGTGGAGGGATGAGCTATAAATGTACTGCAATAATGGAGAATAATGATGACTACCATTTTTTTGTCTAGCAAGTTCATAATAGACACTTCTAACCCATGTATTCATTGTGTGCACAATTAGATGTCTCTCACTTGTTGAATGAATGACTATCAGCGAGATGACTGGCAATTTTATTAATAGTTCAGAAATTGCTTAAATTGCTGTGTCTTACTGTGATCAATTGACTTTGCAATGTAATACAATTACTAACATTTTGTGCCTTCGTTTGCCCCATCTGAATTTCTTCCAAAGGTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGAGTATGTTTTTTGTTAGTGTCCACATATTTTTTCTTTATAACTTGGTTATTTTAATCTCATTCTTTTTGTGCAGATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAGGTACTTGAACATGTTTAACTAATTAAGTCCAATTATTTTTTGTGGGTTTCTGTGGAGGTTAATGGCTTATATGTCATCCAGGTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAGGTAGAATATCGTTTTAATACTGGAACTCTTCATTTTCTTTCCCAGGTTTCTTATTCATTTGTTATTTTGATATCAATTGATTTTGCATTTGCTTTGGAACATTGATAGTTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGG</genome_strand>
        <mrna_strand>GGTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAG...........................................................................GACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCG.............................................................................................GGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTG.................................................................................GATGCTCAGTGAACATGAGGCCAGATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGAGTATGTTTTTTGTTAGTGTCCACATATTTTTTCTTTATAACTTGGTTATTTTAATCTCATTCTTTTTGTGCAGATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAG.................................................................................GTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAG............................................................................................................TTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588587" ref_strand="+" ref_description="SGN-U588587 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaacttgttctcccttaagactttcctttctcctaaaccctacaccattgattctttaggtcaaaaacttctactcgattttcatgcaagagatctactttatcgccaccatctaaacttttttttttttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="47801" stop="47070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47501" g_stop="47370" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U588587" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>132</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47501" e_stop="47370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAGGTCAAAAACTTCTACTCGATTTTCATGCAAGAGATCTACTTTATCGCCACCATCTAAAC-TTTTTTTTTTTAAC</genome_strand>
        <mrna_strand>GAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAGGTCAAAAACTTCTACTCGATTTTCATGCAAGAGATCTACTTTATCGCCACCATCTAAACTTTTTTTTTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575748" ref_strand="+" ref_description="SGN-U575748 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|231610|sp|P29790|ATPG_TOBAC (e_value=2e-109) ATP synthase gamma chain, chloroplast precursor; (*ATH) AT4G04640.1 (e_value=9e-106) | Symbol: None | ATP synthase gamma chain 1, chloroplast (ATPC1), identical to SP:Q01908 ATP synthase gamma chain 1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis thaliana} | chr4:2350496-2352016 REVERSE | Aliases: T19J18.4, T19J18_4; (*SWP) sp|P29790|ATPG_TOBAC (e_value=1e-110) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC; ">
      <seq>cgttttacaaattaaagtagggtatatttctccagtgtgtcgtctgtaatcaatggcttcttcactctctttcacttgtcatgtcgtcaactttcccatttgtgatcctaaactaaccaatagaaaccctagtttccgatccctgcaacttccccttcgttcaattcagtgtggtattcgtgaactacgaggaagaatcgacacaatcaacaaaacccaaaaagttacagaagcaatgaaactagtcgcagccgctaagattcgtcgagcacaagaagcagtcatcagtactcgaccctttgctgaaacccttgttgatatgttgtacaacatcacccaacagcttcagtttgaagaggtagatataccgttgacagaaataagaccggtaaagaaagttggccttgttgttattggaggtgaaagaggtctttgtggtggttttaacaatgggatttttaagaaagcagagagccggatggcggaattgacgagtcttggaattgggtatactttgattagtgttggtaagaagagtaatgcttattttcggaatgttgatagatttgttgttgatagatttgagagttttccgactgctaaagaggctcaggttatagctgatgatgttttttctttgtttattagtgaacaagttgataaagtagagcttttgtacactaaatttgtttcgttgattaaatctgatccggtgattcatactttgctcccattaagaggagaggagttttttgatgaagatgagttttttaggttgactagtaaggaaggtaaactgagtgtggtgagggatttgagggtgaaaaaggggaatttttgcgtaatttagagtatgagcaagatcctgctcagattcttgatgcattgatgccattatatttgaatagccagattttaagggcacttcaagagtcatttgcaagtgaggttgcagctaggatgaatgcaatgactagtgcaacggataatgctgttgagttgaggaggaacctttctattgcttataatcgggaaaggcaggcgaagatcacaggtgagatattggaaattgttgctggagcagatgcactaattacatagatgctgaaatttctgtaggatgtttaagaaaaccattgctttaagttgataatcccttgttccaatctgtcttaaagggagagatcatctctttctatatgtgtgtatgtatgaataaaaaaatttatgattttttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="54197" stop="52359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53901" g_stop="52659" g_length="1243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1242" r_length="1242" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U575748" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1243</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53901" e_stop="52659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTACAAATTAAAGTAGGGTATATTTCTCCAGTGTGTCGTCTGTAATCAATGGCTTCTTCACTCTCTTTCACTTGTCATGTCGTCAACTTTCCCATTTGTGATCCTAAACTAACCAATAGAAACCCTAGTTTCCGATCCCTGCAACTTCCCCTTCGTTCAATTCAGTGTGGTATTCGTGAACTACGAGGAAGAATCGACACAATCAACAAAACCCAAAAAGTTACAGAAGCAATGAAACTAGTCGCAGCCGCTAAGATTCGTCGAGCACAAGAAGCAGTCATCAGTACTCGACCCTTTGCTGAAACCCTTGTTGATATGTTGTACAACATCACCCAACAGCTTCAGTTTGAAGAGGTAGATATACCGTTGACAGAAATAAGACCGGTAAAGAAAGTTGGCCTTGTTGTTATTGGAGGTGAAAGAGGTCTTTGTGGTGGTTTTAACAATGGGATTTTTAAGAAAGCAGAGAGCCGGATGGCGGAATTGACGAGTCTTGGAATTGGGTATACTTTGATTAGTGTTGGTAAGAAGAGTAATGCTTATTTTCGGAATGTTGATAGATTTGTTGTTGATAGATTTGAGAGTTTTCCGACTGCTAAAGAGGCTCAGGTTATAGCTGATGATGTTTTTTCTTTGTTTATTAGTGAACAAGTTGATAAAGTAGAGCTTTTGTACACTAAATTTGTTTCGTTGATTAAATCTGATCCGGTGATTCATACTTTGCTCCCATTAAGAGGAGAGGAGTTTTTTGATGAAGATGAGTTTTTTAGGTTGACTAGTAAGGAAGGTAAACTGAGTGTGGTGAGGGATTTGAGGGTGAAAAAGGGGGAATTTTTGCGTAATTTAGAGTATGAGCAAGATCCTGCTCAGATTCTTGATGCATTGATGCCATTATATTTGAATAGCCAGATTTTAAGGGCACTTCAAGAGTCATTTGCAAGTGAGGTTGCAGCTAGGATGAATGCAATGACTAGTGCAACGGATAATGCTGTTGAGTTGAGGAGGAACCTTTCTATTGCTTATAATCGGGAAAGGCAGGCGAAGATCACAGGTGAGATATTGGAAATTGTTGCTGGAGCAGATGCACTAATTACATAGATGCTGAAATTTCTGTAGGATGTTTAAGAAAACCATTGCTTTAAGTTGATAATCCCTTGTTCCAATCTGTCTTAAAGGGAGAGATCATCTCTTTCTATATGTGTGTATGTATGAATAAAAAAATTTATGATTTTTTTTCCC</genome_strand>
        <mrna_strand>CGTTTTACAAATTAAAGTAGGGTATATTTCTCCAGTGTGTCGTCTGTAATCAATGGCTTCTTCACTCTCTTTCACTTGTCATGTCGTCAACTTTCCCATTTGTGATCCTAAACTAACCAATAGAAACCCTAGTTTCCGATCCCTGCAACTTCCCCTTCGTTCAATTCAGTGTGGTATTCGTGAACTACGAGGAAGAATCGACACAATCAACAAAACCCAAAAAGTTACAGAAGCAATGAAACTAGTCGCAGCCGCTAAGATTCGTCGAGCACAAGAAGCAGTCATCAGTACTCGACCCTTTGCTGAAACCCTTGTTGATATGTTGTACAACATCACCCAACAGCTTCAGTTTGAAGAGGTAGATATACCGTTGACAGAAATAAGACCGGTAAAGAAAGTTGGCCTTGTTGTTATTGGAGGTGAAAGAGGTCTTTGTGGTGGTTTTAACAATGGGATTTTTAAGAAAGCAGAGAGCCGGATGGCGGAATTGACGAGTCTTGGAATTGGGTATACTTTGATTAGTGTTGGTAAGAAGAGTAATGCTTATTTTCGGAATGTTGATAGATTTGTTGTTGATAGATTTGAGAGTTTTCCGACTGCTAAAGAGGCTCAGGTTATAGCTGATGATGTTTTTTCTTTGTTTATTAGTGAACAAGTTGATAAAGTAGAGCTTTTGTACACTAAATTTGTTTCGTTGATTAAATCTGATCCGGTGATTCATACTTTGCTCCCATTAAGAGGAGAGGAGTTTTTTGATGAAGATGAGTTTTTTAGGTTGACTAGTAAGGAAGGTAAACTGAGTGTGGTGAGGGATTTGAGGGTGAAAAA-GGGGAATTTTTGCGTAATTTAGAGTATGAGCAAGATCCTGCTCAGATTCTTGATGCATTGATGCCATTATATTTGAATAGCCAGATTTTAAGGGCACTTCAAGAGTCATTTGCAAGTGAGGTTGCAGCTAGGATGAATGCAATGACTAGTGCAACGGATAATGCTGTTGAGTTGAGGAGGAACCTTTCTATTGCTTATAATCGGGAAAGGCAGGCGAAGATCACAGGTGAGATATTGGAAATTGTTGCTGGAGCAGATGCACTAATTACATAGATGCTGAAATTTCTGTAGGATGTTTAAGAAAACCATTGCTTTAAGTTGATAATCCCTTGTTCCAATCTGTCTTAAAGGGAGAGATCATCTCTTTCTATATGTGTGTATGTATGAATAAAAAAATTTATGATTTTTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566591" ref_strand="+" ref_description="SGN-U566591 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157337909|emb|CAO38953.1| (e_value=5e-158) unnamed; (*ATH) AT1G50710.1 (e_value=1e-147) | Symbol: None | expressed protein | chr1:18788177-18791470 REVERSE | Aliases: F17J6.23, F17J6_23; ">
      <seq>gtgtttgagtataacggaaatatttattagtaatactatattaatcctaaaaattaaagaagaaataaaaaaattatccctaccattaatttttaattttgttatgttagaaaaaaccaaaaatactttacttttaacaaagtaaaaaactcaaataatatttgaagaatcaaaatccaagtccaaaaaattcagtgatttgaattgaatcgccggagaaatgggaagaggtttgggttcgcaaaacttgccggcggacgtcgctcagctgatcgatcagttagaccgccattgtttagcccctgatggatctctcatctccaaatccgctcactacgatctccaacttgcgagagaagagatgtcaaaggagagacaacgatacttggaatctttggcaatatacattgaagcaactgcgatggtagaggattaccagcaggccatttctgtggctaatcttggtggtatgagagatgtccagggtttatactctcaattgggcttgaaaaaccctcctcaggtttatgaggctcttgagcataggatggttgttgcagaagcagcacagagattgaggcttcctcttatctccaaagacggtgagattcacgaggaggaaattgaaaagtggagtacaatgtcaagaagttcttttgatagcacaagcaccagcattacattaagctcgagctcaaactcagcttatcaaaccaatgcatctgcaattggagctgttcctactattagtacaactgattcaacagaaccagatgttggtggtgttcccaatcggttccttggaattacacctgcatatttatggcaaactcaactacatcagatgtcatcagtggacgtggcagaataccagagattactttcacgggagattggtggccggttagatgctaaatgtgataagttagctgatgcagttgctattgatgacattgatatatctgctgccagtcaaaattcagctgccagacttccagagagggtgaagttgatcactgaggagattgaaagagaagaagaagcatggcgcgaggatttatattcatctaacagaaaatttgcagaatactataatgtcttggagcagatccttggtgttcttattaagcttgtcaaagatataaagttggaccatcaacataaatatgatgaactacaaaagacgtggctgtgcaaaagatgtgagaccatgagggcaaaattaagagttctggaacatgttctcctacttgatacttataccccagaaactattcccgcccttcacaaaataaggaagtatttgattgaagcaacagaagaagcatcacttgcatatgagaaagcggcgtcccgtcttcgtgagtatcaaggcgttgatcctcattttgatgaaattgctaggcagtaccatgacattgtaaagaaattggagagcatgcagtggaccattaaccaagttgaaatggacttgaatcctttgcctgctcactccagcacctaagccatctctcttcatattcttcacaaaggttcatgtaatatccatatgtagttatggttgtttctaattatttatttttttcaacacactactttaaacaacctcataatcgctgccatttatacaatctattttgagcttcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="54252" stop="60719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54551" g_stop="54899" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54900" i_stop="54988" i_length="89">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54989" g_stop="55036" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="397" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55037" i_stop="55107" i_length="71">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55108" g_stop="55233" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="523" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55234" i_stop="55588" i_length="355">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55589" g_stop="55921" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="856" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55922" i_stop="56145" i_length="224">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56146" g_stop="56245" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="956" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56246" i_stop="56730" i_length="485">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56731" g_stop="56776" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="1002" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56777" i_stop="57525" i_length="749">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57526" g_stop="57619" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1003" r_stop="1096" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="57620" i_stop="57756" i_length="137">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57757" g_stop="57828" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1097" r_stop="1168" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="57829" i_stop="58006" i_length="178">
            <donor d_prob="0.528" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="58007" g_stop="58065" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1169" r_stop="1227" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="58066" i_stop="59144" i_length="1079">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="59145" g_stop="59213" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1228" r_stop="1296" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="59214" i_stop="59291" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="59292" g_stop="59343" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1297" r_stop="1348" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="59344" i_stop="60023" i_length="680">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="60024" g_stop="60101" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1349" r_stop="1426" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="60102" i_stop="60195" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.321" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="60196" g_stop="60420" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1427" r_stop="1651" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U566591" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54551" e_stop="54899"/>
          <exon e_start="54989" e_stop="55036"/>
          <exon e_start="55108" e_stop="55233"/>
          <exon e_start="55589" e_stop="55921"/>
          <exon e_start="56146" e_stop="56245"/>
          <exon e_start="56731" e_stop="56776"/>
          <exon e_start="57526" e_stop="57619"/>
          <exon e_start="57757" e_stop="57828"/>
          <exon e_start="58007" e_stop="58065"/>
          <exon e_start="59145" e_stop="59213"/>
          <exon e_start="59292" e_stop="59343"/>
          <exon e_start="60024" e_stop="60101"/>
          <exon e_start="60196" e_stop="60420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTGAGTATAACGGAAATATTTATTAGTAATACTATATTAATCCTAAAAATTAAAGAAGAAATAAAAAAATTATCCCTACCATTAATTTTTAATTTTGTTATGTTAGAAAAAACCAAAAATACTTTACTTTTAACAAAGTAAAAAACTCAAATAATATTTGAAGAATCAAAATCCAAGTCCAAAAAATTCAGTGATTTGAATTGAATCGCCGGAGAAATGGGAAGAGGTTTGGGTTCGCAAAACTTGCCGGCGGACGTCGCTCAGCTGATCGATCAGTTAGACCGCCATTGTTTAGCCCCTGATGGATCTCTCATCTCCAAATCCGCTCACTACGATCTCCAACTTGTATTTTCTAATCTCTCTACAATGCTTATTATTTGATCGTTAAGGTAAACCAAACACTCAAAAAAATGATTTATTTTTGGGCATTGCAGGCGAGAGAAGAGATGTCAAAGGAGAGACAACGATACTTGGAATCTTTGGTAGGATTTCTATTTTTGGGTTAACATTTTCATTTTTTTCCTGATTGCCTTTGTCTGGATAAACCTTATAGGCAATATACATTGAAGCAACTGCGATGGTAGAGGATTACCAGCAGGCCATTTCTGTGGCTAATCTTGGTGGTATGAGAGATGTCCAGGGTTTATACTCTCAATTGGGCTTGAAAAACCCTCCTCAGGTTCCACTTTTTTTCAGTTTATTCGATTTTATGGATGCTGTTTGGGTAAAAGGATTCTCTTTTTAGTTCACTGACATTACAGGCCTGCCTTGGGTATACGTATTTTGTGCACGATTTTTTACTAAAAGATTGCACGTACCGTCTAGTGCATGCTTATGCACACCCGTATAGATTGTGTACTGATAAACAAATTGATTATCAATAGATGAGAATGAATGATAAGTTTAAGGTGTTATGCATTGTACATTTTTTAGGCTCTGACGATAGAGTTCTGCAGACAAGTTTTTTTTTTTTTGGTTCATTGTTCAAATTGTTTTAAGTTTTCTGGGTGATTTTGGCTCTGGAATGACTTCAGGTTTATGAGGCTCTTGAGCATAGGATGGTTGTTGCAGAAGCAGCACAGAGATTGAGGCTTCCTCTTATCTCCAAAGACGGTGAGATTCACGAGGAGGAAATTGAAAAGTGGAGTACAATGTCAAGAAGTTCTTTTGATAGCACAAGCACCAGCATTACATTAAGCTCGAGCTCAAACTCAGCTTATCAAACCAATGCATCTGCAATTGGAGCTGTTCCTACTATTAGTACAACTGATTCAACAGAACCAGATGTTGGTGGTGTTCCCAATCGGTTCCTTGGAATTACACCTGCATATTTATGGCAAACTCAACTACATCAGATGTCATCAGTGGTATAATATACCTATTTGATTGACGTGATAACCTCATGGTCTTGTGGGGAAATCTTTTCTGTTTTCCAATTAATCTTCAATGAAAGTGTTGTAGTTGTCTTTTATTTGTGTACATTTATCGATGCTTTGATTGCTTGTTACCTACAAACGTGGAATCGCTATTCATCTGGTTATCAAGTGTTAGTTCTACACGCCCATAGATGCTTATATGTCTGCTATTGTAGGACGTGGCAGAATACCAGAGATTACTTTCACGGGAGATTGGTGGCCGGTTAGATGCTAAATGTGATAAGTTAGCTGATGCAGTTGCTATTGATGACATTGGTGAGTTTAAGTTGCTAATTTGTCTTCCTTTATCTTCCCTTGGTGCTTGGCCTTTCAATATGTTTGTTGGTTGCCGAATTTCTACTTGTTTTCCTCTTAAACAAAACCAGCGTTTATAAATAAGACCTGGACATCTATGTCAGTTTTATAATTAGCCCCTATATACATATTATTATTTGAATGGGTATAATATGTAGTCAATTTGATTGTAATGTTTCAAATTGTGGTGCAAATAGGAAAAATCTACTGCTGAGGTGCATAAGTTCTAGATTTACTTGTTATCCATTTACACAAAACTGTGCCCCATTGCTCCTCAGGGATTTCTTGGTTATAGTTTTTTCTTGATTTACTCATGTCAGTGTATTCTTCAGAGGCTGGTTGAGTAGTTCTCTTACTATTTAAGTAACAGAACTTTTAGAAGTTGTTGTTCTCATATCAAGATTTCTGTAAGAATACAAGTATATAACCTTACCTTGATTCTACAGATATATCTGCTGCCAGTCAAAATTCAGCTGCCAGACTTCCAGAGAGGTCTCTCCCTCTGAACTTATGTTTCTAAATTTATGATTTATCTGAATCATTTATAAAACAGGTTGTGCATGTTATTTAGCTTGTTAATTTCAAAAGAATATTCCTCCTAGTTCCATGAAAGAAAAGACTCTACATTGGATTTACATAAAGAATAAATCATTTGGTAAAAAAGAAAATTTGTATTCTGAAGAATGGATTGACTTGTCATGTTGTTCAATATTCCATTACCATGTATTACAGTTCCTCCCCCCCAGGAGGTGATCTAGCGGTTGAAGAGTTGGAGTATGGAGTAACAACCATAGGGACCAAGGTTGAATGTAGCAGAGGTGGTTATAGATGAACTCCTTCCCATCAATTTATGTTTTGGTCGGAAGTGTTAACCTGTACCTGCGTAGTAGGTAACAAACAAGCAATGCTAGTGTAGTAGTGGCCTAGTTGGTGTATCTGCAATTTGGCCTGGACACCATTTAACATAAAATGATAAAGTGAGATTAATCATATACTCCCTCCATTTCAATTTTGTTTGTCTTAGTTTCACTCGGTACGAAGTAAAAAAAAAAAGAGTTTTGAATGTTGTAGCTTTAAACTAAAGATGTTGGGTATAAAGAGTTGTTAAATATAGAAAGAAACATTCTTTTTGAGTCGGTAAAAAGGAAAGTAAGACAAACAAATTAAAATGGGAACATTAATAATATTCTTGATAGCTTTTTAGATATAGGGGGCGGAACTTCTAATCCATGATGTAACAGGGTGAAGTTGATCACTGAGGAGATTGAAAGAGAAGAAGAAGCATGGCGCGAGGATTTATATTCATCTAACAGAAAATTTGCAGAATACTATAATGTAAGAACTCTGTTTTGCATCACATTTGTCTACCTATTTCTTATTTTCGGCCTTTCCATTCTAAGGTACTTCCACAGATTTGATTAAGACTCATGTTACTTGAGAAAATATTTGACTTCATATGTTGCCTATCTAAGGTCTTGGAGCAGATCCTTGGTGTTCTTATTAAGCTTGTCAAAGATATAAAGTTGGACCATCAACATAAATATGTAAGTTTACCATTCTGCTATTGTTACTTTTGTCCAAATTAAGGCATTCTCATTCTGATTTCTCTAATTTACTATGATAGACACTTCACTTGTTTTGGATACAATTGACACTGCTGATGGTCTTTTGCTCTTTCGGATAGATGTTTATTCTTTCTATAATTTGTGGATGCATTAATAGGATGAACTACAAAAGACGTGGCTGTGCAAAAGATGTGAGACCATGAGGGCAAAATTAAGGTATGACATTCATGATTCTTGTTCTGGTTCGTTGTATTAACTTGTGCCTTGTGTTTTTTTATTTATTGGGCTTGAAGGGATTTGGAAAGTCGAATGTCGAATAACTTCTTTTATTCATTTGTGTGAACATTGTATGGCTATTGATTTTTCACAAGGGTTCTCTTTCTTTTCTTTGATTATTGTGGGGTTGAGATTGGGTGCAAAGCTCAGTCAAGTATTGCTTTCTCTGCCTTATTATGATGGTCTTGTCAATTGCCCAGTGCCTACTATGAAGGTAGTGATCTTGCACTTCAGTGGTTGAAGTCCTGGTTGCAGTTTGTGTCATTTTATTTCTTTTATCTATCGGAAGCACCTTGTTTATTATCCCTTGGAGGGTTTGAATTTTCTCATCTAGGGGTCCAAGGCGGTATAGGTACTACTTATATGTCATGATCTTTTCGAACTAGTGTGTTCTATTGGTTTTCTTCTTTTCATACAGAAGGATATAATTCCTAGAGAAATCTCACATAGTAGTGTATTGCTTTCAATGAGAGTATATTCTCTCGCTTTCATGTGAAATCCGCAGAAATTTGTTCAGCATAATAGGGTCACCATCAACTTCAATAGATTTTCTTATATCCTGTTATTCTCTCACTAAAGAACAGGATCTCTTGCTTTGAGACTTATGTCTTGGAAATACTAATATTATGATCTTATTCTCAAAAAAAAAGAGTAAATACTATGGTTATGGTCATCAAGTGTAACAGCTTCCATGATTTTCTATTTTTCACCAAATTTCTGGAACGTACTCTCCTATTTCAGACTTGTGCATCAAAAAGCACTTCACAAAATTAAGTTGAAATTTCTTGAAAAATTTCACTTGGTAATGTTAAGTTCAATGAGAGTAGTCTCTTAAAAACCCTAGAAATTAATTAGCATTTCCAGTTTTATAATCAACTTTAATAGCACTTTACATCCTGTTATTCTGTTAAATAAAGAACACAATGTCTAAGATCTTGCTTCTATACTTGTGCCTTTGTTATACTTGTGTCACGGTAATCAAGTTTTAACAGCTCCTGACACATCCTTTTCTTTAGCAGAGTTCTGGAACATGTTCTCCTACTTGATACTTATACCCCAGAAACTATTCCCGCCCTTCACAAAATAAGGTAAAGAAACATGACTTAAGAAATCCTTATTGTGTTTCCGATGTTGAAGAACGTATACTCAGTTTACCATCATCACAGGAAGTATTTGATTGAAGCAACAGAAGAAGCATCACTTGCATATGAGAAAGCGGTACACTTTCTTATACTAATTTATCCTCTTTTTTTTTTGATTTGATGGATCATCTTCATATGTACTACATTTCCATGATTTAATTACACTTGTTCCGTGGACTCTGACACCTCATTTGGGAGAATCAACGAATCTTGATCAGTCAGATTATATAACAGTATCTAGCCGTGTAGTGGTAATAAGAGGACAAGTGGATTAGGCACATGTCACAACTTTGAACCTTGCTAGATAAATATCTGATATTTAAGTGGAGAAGGGTAGAGGGACGGGCCCATTATCCATTGAGCTTCGAACCATGTGCCAACTAGTCACTATCACGAGATTTGTTATTTGTTAAAAAAAATCTGTTAAATGCAGTTGGAAGATAGCCTGATATCATGTATTGATCTTCACAAAAATGCCTCAATTCAGATTGTTGATTGGCAGTTTTCATTTTCCATGTAAATTATGTCATTAAATTGGAGTTCACTAAAATAGGATCTCTTTCCTGCATATTTTTGCTTGTCCTCACTATTTCGTTTGCCAAAAGTAGCCAAATACTTGAGAAATCACTGTGGGTCTCTATTTTTCTGGTTTGGTGTTGAATAAGGATGAAATCATAGCTTTGCCTTCAAACTAGTTTATTAATCAGTCTGACGTTGTTGGGCATGGCTTTTGATCCTAACTGTGAAATATGTTAGGCGTCCCGTCTTCGTGAGTATCAAGGCGTTGATCCTCATTTTGATGAAATTGCTAGGCAGTACCATGACATTGTAAAGGTAAAGTAAAGTTCATGCGAGTTTTGTTAAATTATTGTAGTTTATTACTTTTGTTTTTTCGGAGACAAGCTAACTTTGACTCGTATCCAAGCAGAAATTGGAGAGCATGCAGTGGACCATTAACCAAGTTGAAATGGACTTGAATCCTTTGCCTGCTCACTCCAGCACCTAAGCCATCTCTCTTCATATTCTTCACAAAGGTTCATGTAATATCCATATGTAGTTATGGTTGTTTCTAATTATTTATTTTTTTCAACACACTACTTTAAACAACCTCATAATCGCTGCCATTTATACAATCTATTTTGAGCTTCAGAAC</genome_strand>
        <mrna_strand>GTGTTTGAGTATAACGGAAATATTTATTAGTAATACTATATTAATCCTAAAAATTAAAGAAGAAATAAAAAAATTATCCCTACCATTAATTTTTAATTTTGTTATGTTAGAAAAAACCAAAAATACTTTACTTTTAACAAAGTAAAAAACTCAAATAATATTTGAAGAATCAAAATCCAAGTCCAAAAAATTCAGTGATTTGAATTGAATCGCCGGAGAAATGGGAAGAGGTTTGGGTTCGCAAAACTTGCCGGCGGACGTCGCTCAGCTGATCGATCAGTTAGACCGCCATTGTTTAGCCCCTGATGGATCTCTCATCTCCAAATCCGCTCACTACGATCTCCAACTT.........................................................................................GCGAGAGAAGAGATGTCAAAGGAGAGACAACGATACTTGGAATCTTTG.......................................................................GCAATATACATTGAAGCAACTGCGATGGTAGAGGATTACCAGCAGGCCATTTCTGTGGCTAATCTTGGTGGTATGAGAGATGTCCAGGGTTTATACTCTCAATTGGGCTTGAAAAACCCTCCTCAG...................................................................................................................................................................................................................................................................................................................................................................GTTTATGAGGCTCTTGAGCATAGGATGGTTGTTGCAGAAGCAGCACAGAGATTGAGGCTTCCTCTTATCTCCAAAGACGGTGAGATTCACGAGGAGGAAATTGAAAAGTGGAGTACAATGTCAAGAAGTTCTTTTGATAGCACAAGCACCAGCATTACATTAAGCTCGAGCTCAAACTCAGCTTATCAAACCAATGCATCTGCAATTGGAGCTGTTCCTACTATTAGTACAACTGATTCAACAGAACCAGATGTTGGTGGTGTTCCCAATCGGTTCCTTGGAATTACACCTGCATATTTATGGCAAACTCAACTACATCAGATGTCATCAGTG................................................................................................................................................................................................................................GACGTGGCAGAATACCAGAGATTACTTTCACGGGAGATTGGTGGCCGGTTAGATGCTAAATGTGATAAGTTAGCTGATGCAGTTGCTATTGATGACATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATCTGCTGCCAGTCAAAATTCAGCTGCCAGACTTCCAGAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGTTGATCACTGAGGAGATTGAAAGAGAAGAAGAAGCATGGCGCGAGGATTTATATTCATCTAACAGAAAATTTGCAGAATACTATAAT.........................................................................................................................................GTCTTGGAGCAGATCCTTGGTGTTCTTATTAAGCTTGTCAAAGATATAAAGTTGGACCATCAACATAAATAT..................................................................................................................................................................................GATGAACTACAAAAGACGTGGCTGTGCAAAAGATGTGAGACCATGAGGGCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTGGAACATGTTCTCCTACTTGATACTTATACCCCAGAAACTATTCCCGCCCTTCACAAAATAAG..............................................................................GAAGTATTTGATTGAAGCAACAGAAGAAGCATCACTTGCATATGAGAAAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCCCGTCTTCGTGAGTATCAAGGCGTTGATCCTCATTTTGATGAAATTGCTAGGCAGTACCATGACATTGTAAAG..............................................................................................AAATTGGAGAGCATGCAGTGGACCATTAACCAAGTTGAAATGGACTTGAATCCTTTGCCTGCTCACTCCAGCACCTAAGCCATCTCTCTTCATATTCTTCACAAAGGTTCATGTAATATCCATATGTAGTTATGGTTGTTTCTAATTATTTATTTTTTTCAACACACTACTTTAAACAACCTCATAATCGCTGCCATTTATACAATCTATTTTGAGCTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597099" ref_strand="+" ref_description="SGN-U597099 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tatcacatttagcatctaaccggccaccaatctcccgtgaaagtaatctctggtattctgccacgtcctacaatagcagacatataagcatctatgggcgtgtagaactaacacttgataaccagatgaatagtgattccacgtttgtaggtaacaagcaatcaaagcatcgataaatgtatacaaataaaagacaactacaacactttcattgaagattaattggaaaacagaaaagatttccccacaagaccatgaggttatcacgtcaatcaaataggtatatttataccactgatgacatctgatgtagttgagttcgccataaatatgcaggtgtaattccaaggaaccgattgggaacaccaccaacatctggttctgttgaatcagttgtactaatagtaggaacagctccaattgcagatgcattgatttgataagctgagtttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="56512" stop="55459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56212" g_stop="55759" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U597099" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56212" e_stop="55759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACATTTAGCATCTAACCGGCCACCAATCTCCCGTGAAAGTAATCTCTGGTATTCTGCCACGTCCTACAATAGCAGACATATAAGCATCTATGGGCGTGTAGAACTAACACTTGATAACCAGATGAATAGCGATTCCACGTTTGTAGGTAACAAGCAATCAAAGCATCGATAAATGTACACAAATAAAAGACAACTACAACACTTTCATTGAAGATTAATTGGAAAACAGAAAAGATTTCCCCACAAGACCATGAGGTTATCACGTCAATCAAATAGGTATA-TTATACCACTGATGACATCTGATGTAGTTGAGTTTGCCATAAATATGCAGGTGTAATTCCAAGGAACCGATTGGGAACACCACCAACATCTGGTTCTGTTGAATCAGTTGTACTAATAGTAGGAACAGCTCCAATTGCAGATGCATTGGTTTGATAAGCTGAGTTTGAG</genome_strand>
        <mrna_strand>TATCACATTTAGCATCTAACCGGCCACCAATCTCCCGTGAAAGTAATCTCTGGTATTCTGCCACGTCCTACAATAGCAGACATATAAGCATCTATGGGCGTGTAGAACTAACACTTGATAACCAGATGAATAGTGATTCCACGTTTGTAGGTAACAAGCAATCAAAGCATCGATAAATGTATACAAATAAAAGACAACTACAACACTTTCATTGAAGATTAATTGGAAAACAGAAAAGATTTCCCCACAAGACCATGAGGTTATCACGTCAATCAAATAGGTATATTTATACCACTGATGACATCTGATGTAGTTGAGTTCGCCATAAATATGCAGGTGTAATTCCAAGGAACCGATTGGGAACACCACCAACATCTGGTTCTGTTGAATCAGTTGTACTAATAGTAGGAACAGCTCCAATTGCAGATGCATTGATTTGATAAGCTGAGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567625" ref_strand="+" ref_description="SGN-U567625 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|10568116|gb|AAD28192.2| (e_value=5e-94) calcium-dependent protein kinase [Solanum tuberosum]; (*ATH) AT1G50700.1 (e_value=8e-76) | Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative, similar to calmodulin-domain protein kinase CDPK isoform 9 (Arabidopsis thaliana) gi:1399265:gb:AAB03242 | chr1:18785882-18788053 FORWARD | Aliases: F17J6.22, F17J6_22; (*SWP) sp|P49101|CDPK2_MAIZE (e_value=8e-74) Calcium-dependent protein kinase 2 OS=Zea mays GN=CDPK2; ">
      <seq>tccacgaggttagtagctactattgcttttcaaacaatttactcctttctactacttacttcatcttttgatttgcccgatgatgatagatcatccttggctcaaggtaggtggagtagcatcagataaaccattagataatgctgtcctctcaagaatgaagcaattcagagctatgaacaaactcaagacttgctttaaaggtcattgctgagaatctctcagcagatgaaattcaggggctcaaatcaatgttccataacattgacactgataatagtggaacaatcacttatgaagaattgaacagcggattggccagacttggatcaaagctcacagaggcggaagtaaagcaattgatggaagctgtaaggccgagacacatcaactgttcactttgttgttcaaatggtgtacaccatgaaataactaaatatatcttgtcaacttcaggctgatgtggatggaaatggctcgatcgactatattgagtttatcactgccaccatgcataaacatagactagaaagagatgaaaatctatacaaagcatttcagtatttcgataaagatggtagcgggttcattacaagagatgaactcgaaacatctatggaagagcatggaataggtgatccagctagtataagggaaataatatctgaagtggacgctgataatgatggaagaatcaactataaggaattttgtacaatgatgacaagtggagctaaacaaccaggcaagctcttctaataacacgaatctcctagtcgttggaggtagtgattcttcaacgtttgcatcatggactgcccatatgatatgacagacatcaagtacatgaacaacctgaaatagttggagcttttaacttctccctgtaaattggtgattcctgtttctgttctttttctcactatgttgaattgtctactcattagttttttctattccacaaagagcacagaggaaatgagtgaagaacataaactctttactatttgaatagagaaacaaatgaccttgtaaatatatcttgtgttattttcaagtgtttttatatgtaaaataaacatctcttgtaaaaagaaactgtggaacatttttcacccccattttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="62713" stop="60720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62413" g_stop="62211" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62210" i_stop="62094" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62093" g_stop="61713" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="584" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61712" i_stop="61643" i_length="70">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61642" g_stop="61543" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="684" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61542" i_stop="61465" i_length="78">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61464" g_stop="61019" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="1130" r_length="446" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U567625" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1130</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62413" e_stop="62211"/>
          <exon e_start="62093" e_stop="61713"/>
          <exon e_start="61642" e_stop="61543"/>
          <exon e_start="61464" e_stop="61019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCTGAGTTAGTAGCTACTATTGCTTTTCAAACAATTTACTCCTTTCTACTACTTACTTCATCTTTTGATTTGCCCGATGATGATAGATCATCCTTGGCTCAAGGTAGGTGGAGTAGCATCAGATAAACCATTAGATAATGCTGTCCTCTCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGACTTGCTTTAAAGGTAACATGTGACTCTGATTTCTTTGCTCTAACTCAATACAACTAACTATATGTATATCAATCTTCCATTTTATTCATTAACACTGGAACTACCATTGAGCTATGGTTTAAGTATCAGGTCATTGCTGAGAATCTCTCAGCAGATGAAATTCAGGGGCTCAAATCAATGTTCCATAACATTGACACTGATAATAGTGGAACAATCACTTATGAAGAATTGAACAGCGGATTGGCCAGACTTGGATCAAAGCTCACAGAGGCGGAAGTAAAGCAATTGATGGAAGCTGTAAGGCCGAGACACATCAACTGTTCACTTTGTTGTTCAAATGGTGTACACCATGAAATAACTAAATATATCTTGTCAACTTCAGGCTGATGTGGATGGAAATGGCTCGATCGACTATATTGAGTTTATCACTGCCACCATGCATAAACATAGACTAGAAAGAGATGAAAATCTATACAAAGCATTTCAGTATTTCGATAAAGATGGTAGCGGGTAAGTCCATTGTGCAAATGCAGCAGTGTGGAATTGTTAAATCAGTGGTGTTTTCTTTTGTATAATGCAGGTTCATTACAAGAGATGAACTCGAAACATCTATGGAAGAGCATGGAATAGGTGATCCAGCTAGTATAAGGGAAATAATATCTGAAGTGGACGCTGATAATGTGAGTTTGGTCACTCTTAAATCATTCCAAAAACTGTCAAACCTATCTTAACACGTATTGATTCTGTAAAATTTACAGGATGGAAGAATCAACTATAAGGAATTTTGTACAATGATGACAAGTGGAGCTAAACAACCAGGCAAGCTCTTCTAATAACACGAATCTCCTAGTCGTTGGAGGTAGTGATTCTTCAACGTTTGCATCATGGACTGCCCATATGATATGACAGACATCAAGTACATGAACAACCTGAACTAGTTGGAGCTTTTAACTTCTCCCTGTAAATTGGTGATTCCTGTTTCTGTTCTTTTTCTCACTATGTTGAATTGTCTACTCATTAGTTTTTTCTATTCCACAAAGAGCACAGAGGAAATGAGTGAAGAACATAAACTCTTTACTATTTGAATAGAGAAACAAATGACCTTGTAAATATATCTTGTGTTATTTTCAAGTGTTTTTATATGTAAAATAAACATCTCTTGTAAAAAGAAACTGTGGAACATCTTTCACCCACATTTTGTTTA</genome_strand>
        <mrna_strand>TCCACGAGGTTAGTAGCTACTATTGCTTTTCAAACAATTTACTCCTTTCTACTACTTACTTCATCTTTTGATTTGCCCGATGATGATAGATCATCCTTGGCTCAAGGTAGGTGGAGTAGCATCAGATAAACCATTAGATAATGCTGTCCTCTCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGACTTGCTTTAAAG.....................................................................................................................GTCATTGCTGAGAATCTCTCAGCAGATGAAATTCAGGGGCTCAAATCAATGTTCCATAACATTGACACTGATAATAGTGGAACAATCACTTATGAAGAATTGAACAGCGGATTGGCCAGACTTGGATCAAAGCTCACAGAGGCGGAAGTAAAGCAATTGATGGAAGCTGTAAGGCCGAGACACATCAACTGTTCACTTTGTTGTTCAAATGGTGTACACCATGAAATAACTAAATATATCTTGTCAACTTCAGGCTGATGTGGATGGAAATGGCTCGATCGACTATATTGAGTTTATCACTGCCACCATGCATAAACATAGACTAGAAAGAGATGAAAATCTATACAAAGCATTTCAGTATTTCGATAAAGATGGTAGCGG......................................................................GTTCATTACAAGAGATGAACTCGAAACATCTATGGAAGAGCATGGAATAGGTGATCCAGCTAGTATAAGGGAAATAATATCTGAAGTGGACGCTGATAAT..............................................................................GATGGAAGAATCAACTATAAGGAATTTTGTACAATGATGACAAGTGGAGCTAAACAACCAGGCAAGCTCTTCTAATAACACGAATCTCCTAGTCGTTGGAGGTAGTGATTCTTCAACGTTTGCATCATGGACTGCCCATATGATATGACAGACATCAAGTACATGAACAACCTGAAATAGTTGGAGCTTTTAACTTCTCCCTGTAAATTGGTGATTCCTGTTTCTGTTCTTTTTCTCACTATGTTGAATTGTCTACTCATTAGTTTTTTCTATTCCACAAAGAGCACAGAGGAAATGAGTGAAGAACATAAACTCTTTACTATTTGAATAGAGAAACAAATGACCTTGTAAATATATCTTGTGTTATTTTCAAGTGTTTTTATATGTAAAATAAACATCTCTTGTAAAAAGAAACTGTGGAACATTTTTCACCCCCATTTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567623" ref_strand="+" ref_description="SGN-U567623 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|10568116|gb|AAD28192.2| (e_value=4e-76) calcium-dependent protein kinase [Solanum tuberosum]; (*ATH) AT3G20410.1 (e_value=1e-59) | Symbol: None | calmodulin-domain protein kinase isoform 9 (CPK9), identical to calmodulin-domain protein kinase CDPK isoform 9 (Arabidopsis thaliana) gi:1399265:gb:AAB03242 | chr3:7116207-7119127 FORWARD | Aliases: MQC12.23; (*SWP) sp|P49101|CDPK2_MAIZE (e_value=5e-60) Calcium-dependent protein kinase 2 OS=Zea mays GN=CDPK2; ">
      <seq>atttgatgccatattaaaagaagacattgactttgaaagtcaaccttggccctctatcacaactagtgccaaggacctggtccgaaagatgctcaataaagacccaaagcaacgtatttctgctgctcaagttcttgatcatccttggctcaaggtaggtggagtagcatcagataaaccattagataatgctgtcctctcaagaatgaagcaattcagagctatgaacaaactcaagacttgctttaaaggtaacatgtgactctgatttctttgctctaactcaatacaactaactatatgtatatcaatcttccattttattcattaacactggaactaccattgagctatggtttaagtatcaggtcattgctgagaatctctcagcagatgaaattcaggggctcaaatcaatgttccataacattgacactgataatagtggaacaatcacttatgaagaattgaacagcggattggccagacttggatcaaagctcacagaggcggaagtaaagcaattgatggaagctgctgatgtggatggaaatggctcgatcgactatattgagtttatcactgccaccatgcataaacatagactagaaagagatgaaaatctatacaaagcatttcagtatttcgataaagatggtagcggtggtgttttcttttgtataatgcaggttcattacaagagatgaactcgaaacatctatggaagagcatggaataggtgatccagctagtataagggaaataatatctgaagtggacgctgataatgatggaagaatcaactataaggaattttgtacaatgatgacaagtggagctaaacaaccaggcaagctcttctaataacacgaatctcctagtcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="62851" stop="61068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62551" g_stop="62415" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62414" i_stop="62325" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62324" g_stop="61926" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="536" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61925" i_stop="61841" i_length="85">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61840" g_stop="61713" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="664" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61712" i_stop="61663" i_length="50">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61662" g_stop="61543" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="789" r_length="125" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61542" i_stop="61465" i_length="78">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61464" g_stop="61368" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="886" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U567623" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62551" e_stop="62415"/>
          <exon e_start="62324" e_stop="61926"/>
          <exon e_start="61840" e_stop="61713"/>
          <exon e_start="61662" e_stop="61543"/>
          <exon e_start="61464" e_stop="61368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATGCCATATTAAAAGAAGACATTGACTTTGAAAGTCAACCTTGGCCCTCTATCACAACTAGTGCCAAGGACCTGGTCCGAAAGATGCTCAATAAAGACCCAAAGCAACGTATTTCTGCTGCTCAAGTTCTTGGTACGCTGAGTTAGTAGCTACTATTGCTTTTCAAACAATTTACTCCTTTCTACTACTTACTTCATCTTTTGATTTGCCCGATGATGATAGATCATCCTTGGCTCAAGGTAGGTGGAGTAGCATCAGATAAACCATTAGATAATGCTGTCCTCTCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGACTTGCTTTAAAGGTAACATGTGACTCTGATTTCTTTGCTCTAACTCAATACAACTAACTATATGTATATCAATCTTCCATTTTATTCATTAACACTGGAACTACCATTGAGCTATGGTTTAAGTATCAGGTCATTGCTGAGAATCTCTCAGCAGATGAAATTCAGGGGCTCAAATCAATGTTCCATAACATTGACACTGATAATAGTGGAACAATCACTTATGAAGAATTGAACAGCGGATTGGCCAGACTTGGATCAAAGCTCACAGAGGCGGAAGTAAAGCAATTGATGGAAGCTGTAAGGCCGAGACACATCAACTGTTCACTTTGTTGTTCAAATGGTGTACACCATGAAATAACTAAATATATCTTGTCAACTTCAGGCTGATGTGGATGGAAATGGCTCGATCGACTATATTGAGTTTATCACTGCCACCATGCATAAACATAGACTAGAAAGAGATGAAAATCTATACAAAGCATTTCAGTATTTCGATAAAGATGGTAGCGGGTAAGTCCATTGTGCAAATGCAGCAGTGTGGAATTGTTAAATCAGTGGTG-----TTTTCTTTTGTATAATGCAGGTTCATTACAAGAGATGAACTCGAAACATCTATGGAAGAGCATGGAATAGGTGATCCAGCTAGTATAAGGGAAATAATATCTGAAGTGGACGCTGATAATGTGAGTTTGGTCACTCTTAAATCATTCCAAAAACTGTCAAACCTATCTTAACACGTATTGATTCTGTAAAATTTACAGGATGGAAGAATCAACTATAAGGAATTTTGTACAATGATGACAAGTGGAGCTAAACAACCAGGCAAGCTCTTCTAATAACACGAATCTCCTAGTCGTT</genome_strand>
        <mrna_strand>ATTTGATGCCATATTAAAAGAAGACATTGACTTTGAAAGTCAACCTTGGCCCTCTATCACAACTAGTGCCAAGGACCTGGTCCGAAAGATGCTCAATAAAGACCCAAAGCAACGTATTTCTGCTGCTCAAGTTCTTG..........................................................................................ATCATCCTTGGCTCAAGGTAGGTGGAGTAGCATCAGATAAACCATTAGATAATGCTGTCCTCTCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGACTTGCTTTAAAGGTAACATGTGACTCTGATTTCTTTGCTCTAACTCAATACAACTAACTATATGTATATCAATCTTCCATTTTATTCATTAACACTGGAACTACCATTGAGCTATGGTTTAAGTATCAGGTCATTGCTGAGAATCTCTCAGCAGATGAAATTCAGGGGCTCAAATCAATGTTCCATAACATTGACACTGATAATAGTGGAACAATCACTTATGAAGAATTGAACAGCGGATTGGCCAGACTTGGATCAAAGCTCACAGAGGCGGAAGTAAAGCAATTGATGGAAGCT.....................................................................................GCTGATGTGGATGGAAATGGCTCGATCGACTATATTGAGTTTATCACTGCCACCATGCATAAACATAGACTAGAAAGAGATGAAAATCTATACAAAGCATTTCAGTATTTCGATAAAGATGGTAGCGG..................................................TGGTGTTTTCTTTTGTATAATGCAGGTTCATTACAAGAGATGAACTCGAAACATCTATGGAAGAGCATGGAATAGGTGATCCAGCTAGTATAAGGGAAATAATATCTGAAGTGGACGCTGATAAT..............................................................................GATGGAAGAATCAACTATAAGGAATTTTGTACAATGATGACAAGTGGAGCTAAACAACCAGGCAAGCTCTTCTAATAACACGAATCTCCTAGTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567627" ref_strand="+" ref_description="SGN-U567627 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|10568116|gb|AAD28192.2| (e_value=1e-77) calcium-dependent protein kinase [Solanum tuberosum]; (*ATH) AT3G20410.1 (e_value=5e-56) | Symbol: None | calmodulin-domain protein kinase isoform 9 (CPK9), identical to calmodulin-domain protein kinase CDPK isoform 9 (Arabidopsis thaliana) gi:1399265:gb:AAB03242 | chr3:7116207-7119127 FORWARD | Aliases: MQC12.23; (*SWP) sp|P49101|CDPK2_MAIZE (e_value=6e-57) Calcium-dependent protein kinase 2 OS=Zea mays GN=CDPK2; ">
      <seq>acgaggcttttctcctcttttttagtacctttgtcagtggttatacactgtttatgctgaccaatgtttcagtgttgttaactttccccataagattcaatccaactcattaggggacaattttagatatattaacaattccaatatagaatcttgaataattccttaaaaagtgtttctttttttagaataaaaatccaatctttttgtgtatcacttatatggtgtctttaacttttagattctaatttttcttgaatctccatctggggttgttgttttcttgatttctggatctgctgagataaatgggtatttgtttgagcaaaagtaaaccaacagagtacaagtctagtgcgcatcatagatcaggtgggagtgatgggggtagggggcatcatcatggaacccatcaaactcaaattcagtatactaaatcagcaggcccagaaactcaatcacccatgagaactcaagcaagtcgtaaaccagtagaaaccattttgggcaaggcatttgaagatgttaaggcacactatacactaggtaaagaattgggtagaggtcaatttggggttacatttctttgtactgaaatatcaagtggtcatcaatatgcttgtaagtcaatatcaaagaagaaacttgttactaaatctgataaagctgatatgagaagagagattcagattatgcagcatttgagtggacaaccaaatatagttgcatttaaaggtgcttatgaggataagaattcagtgtgtcttgttatggagttgtgtgctggtggagagttatttgataggatcatagctaagggtcattacactgaaagagctgctgcaatcatgtgtaaagctattgttaatgttgtacttgtttgccgcctgagaactttctcttgtcaaacgagtgaaaatgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="64311" stop="62792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64017" g_stop="63092" g_length="926"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="926" r_length="926" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U567627" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64017" e_stop="63092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTTTCTCCTCTTTTTTAGTACCTTTGTCAGTGGTTATACACTGTTTATGCTGACCAATGTTTCAGTGTTGTTAACTTTCCCCATAAGATTCAATCCAACTCATTAGGGGACAATTTTAGATATATTAACAATTCCAATATAGAATCTTGAATAATTCCTTAAAAAGTGTTTCTTTTTTTAGAATAAAAATCCAATCTTTTTGTGTATCACTTATATGGTGTCTTTAACTTTTAGATTCTAATTTTTCTTGAATCTCCATCTGGGGTTGTTGTTTTCTTGATTTCTGGATCTGCTGAGATAAATGGGTATTTGTTTGAGCAAAAGTAAACCAACAGAGTACAAGTCTAGTGCGCATCATAGATCAGGTGGGAGTGATGGGGGTAGGGGGCATCATCATGGAACCCATCAAACTCAAATTCAGTATACTAAATCAGCAGGCCCAGAAACTCAATCACCCATGAGAACTCAAGCAAGTCGTAAACCAGTAGAAACCATTTTGGGCAAGGCATTTGAAGATGTTAAGGCACACTATACACTAGGTAAAGAATTGGGTAGAGGTCAATTTGGGGTTACATTTCTTTGTACTGAAATATCAAGTGGTCATCAATATGCTTGTAAGTCAATATCAAAGAAGAAACTTGTTACTAAATCTGATAAAGCTGATATGAGAAGAGAGATTCAGATTATGCAGCATTTGAGTGGACAACCAAATATAGTTGCATTTAAAGGTGCTTATGAGGATAAGAATTCAGTGTGTCTTGTTATGGAGTTGTGTGCTGGTGGAGAGTTATTTGATAGGATCATAGCTAAGGGTCATTACACTGAAAGAGCTGCTGCATCAATGTGTAGAGCTATTGTTAATGTTGTACATGTTTGCCGCCTGAGAACTTTCTCTTGTCAGACGAGTGAAAATGCTGCT</genome_strand>
        <mrna_strand>ACGAGGCTTTTCTCCTCTTTTTTAGTACCTTTGTCAGTGGTTATACACTGTTTATGCTGACCAATGTTTCAGTGTTGTTAACTTTCCCCATAAGATTCAATCCAACTCATTAGGGGACAATTTTAGATATATTAACAATTCCAATATAGAATCTTGAATAATTCCTTAAAAAGTGTTTCTTTTTTTAGAATAAAAATCCAATCTTTTTGTGTATCACTTATATGGTGTCTTTAACTTTTAGATTCTAATTTTTCTTGAATCTCCATCTGGGGTTGTTGTTTTCTTGATTTCTGGATCTGCTGAGATAAATGGGTATTTGTTTGAGCAAAAGTAAACCAACAGAGTACAAGTCTAGTGCGCATCATAGATCAGGTGGGAGTGATGGGGGTAGGGGGCATCATCATGGAACCCATCAAACTCAAATTCAGTATACTAAATCAGCAGGCCCAGAAACTCAATCACCCATGAGAACTCAAGCAAGTCGTAAACCAGTAGAAACCATTTTGGGCAAGGCATTTGAAGATGTTAAGGCACACTATACACTAGGTAAAGAATTGGGTAGAGGTCAATTTGGGGTTACATTTCTTTGTACTGAAATATCAAGTGGTCATCAATATGCTTGTAAGTCAATATCAAAGAAGAAACTTGTTACTAAATCTGATAAAGCTGATATGAGAAGAGAGATTCAGATTATGCAGCATTTGAGTGGACAACCAAATATAGTTGCATTTAAAGGTGCTTATGAGGATAAGAATTCAGTGTGTCTTGTTATGGAGTTGTGTGCTGGTGGAGAGTTATTTGATAGGATCATAGCTAAGGGTCATTACACTGAAAGAGCTGCTGCAATCATGTGTAAAGCTATTGTTAATGTTGTACTTGTTTGCCGCCTGAGAACTTTCTCTTGTCAAACGAGTGAAAATGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U583284" ref_strand="+" ref_description="SGN-U583284 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157337913|emb|CAO38957.1| (e_value=1e-48) unnamed; (*ATH) AT1G74410.1 (e_value=3e-15) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr1:27969215-27971563 FORWARD | Aliases: F1M20.9, F1M20_9; (*SWP) sp|Q8LBA0|ATL1Q_ARATH (e_value=3e-14) RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q; ">
      <seq>cccttcctaaaaaaatttcactctctaattctaccttctttattattattattattttcttgccatatcgtaacagttttgtggctcatttttttcaaatgacaaaccatttgtttacttgcatttatactttactggtaaagagtagagagtgtattttcacttgggttttcttcggcttttcttctggactcttgttgatggtcacaaagaatgctatttgggctctttttatgtgcattcttgctttaggaggagcgacagtagggatagtgaccggagcaattaagggacagacaacagagacggggctactccgaggggccggtgttggtgctgttaccggacctgttacaactgtccaattagtcgaacttatacttaacggagaatcattttctaaggttgcacttgtatgtagtctagtaaatggaaaggtattcatggaatgggttagtcctgctgttctcaaggcttatcagtggcaagtaagacatcttttatagcagaaactttttaataatttgtggtgattgtttctattagacacatacatttttgggttattattttaaaataaaaatttcaggttactactcatgtagagtcaagtttgagggaaatatctgacatctttgatatcaatgcgaccaaagggttatcacaagaggtgataaagaagttgccaaagtactatttctgttcagtgagtacatctcaacaagtgacttgtgcaatttgccttcaggtgatcgtcagtataaaaaattatttaatctacagtgttttttctaactctaatgaatttacatcaattattatattgtaggatttgaaagacggggagtcggcaagggtgctaccaagttgcaaacattcattccatacacaatgcatagatgagtggctaaccagacatggaagttgtccaatttgtagagtagaaatctgagagttaactagtaatactactaaatcctaaaggagagaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="70263" stop="72133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70561" g_stop="70808" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70809" i_stop="71026" i_length="218">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71027" g_stop="71178" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="404" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71179" i_stop="71242" i_length="64">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71243" g_stop="71833" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="995" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U583284" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>991</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70561" e_stop="70808"/>
          <exon e_start="71027" e_stop="71178"/>
          <exon e_start="71243" e_stop="71833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTAAAAAAATTTCACTCTCTAATTCTACCTTCTT---TATTATTATTATTTTCTTGCCATATTGTAACAGTTTTGTGGCTCATTCTTT-CAAATGACAAACCATTTGTTTACTTGCATTTATACTTTACTGGTAAAGAGTAAAGAGTGTATTTTCACTTGGGTTTTCTTCGGCTTTTCTTCTGGACTCTTGTTGATGGTCACAAAGAATGCTATTTGGGCTCTTTTTATGTGCATTCTTGCTTTAGGTATATCTTTTTTTTTCTTTTCACAAAGACGTTTGGTTATGAAAAAGAAAAAAAAAACTATAAATAGTTTGTGTGTGTTGTACCTTTGCAATTCCATATTATTGATTTTTCAATGTTTAGAGAAGTTGTATTTACTATGAGAATTGTGTTGGACAAACCGAAATCCGGTTGAAAATTTAATATTTTCGTAGTAATGTTGAAATTAGTTATTTAATCAGGAGGAGCGACAGTAGGGATAGTGACCGGAGCAATTAAGGGACAGACAACAGAGACGGGGCTACTCCGAGGGGCCGGTGTTGGTGCTGTTACCGGAGCTGTTACAACTGTCCAATTAGTCGAACTTATACTTAACGGAGAATCATTTTCTAAGGTTAAAAAATATTGTTTGTATAGATAGATAAATTGTTGATGTACTAAAAATATACATACTGCAGGTTGCACTTGTATGTAGTCTAGTAAATGGAAAGGTATTCATGGAATGGGTTAGTCCTGCTGTTCTCAAGGCTTATCAGTGGCAAGTAAGACATCTTTTATAGCAGAAACTTTTTAATAATTTGTGGTGATTGTTTCTATTAGACACATACATTTTTGGGTTATTATTTTAAAATAAAAATTTCAGGTTACTACTCATGTAGAGTCAAGTTTGAGGGAAATATCTGACATCTTTGATATCAATGCGACCAAAGGGTTATCACAAGAGGTGATAAAGAAGTTGCCAAAGTACTATTTCTGTTCAGTGAGTACATCTCAACAAGTGACTTGTGCAATTTGCCTTCAGGTGATCGTCAGTATAAAAAATTATTTAATCTACAGTGTTTTTTCTAACTCTAATGAATTTACATCAATTATTATATTGTAGGATTTGAAAGACGGGGAGTCGGCAAGGGTGCTACCAAGTTGCAAACATTCATTCCATACACAATGCATAGATGAGTGGCTAACCAGACATGGAAGTTGTCCAATTTGTAGAGTAGAAATCTGAGAGTTAACTAGTAATACTACTAAATCCTAAAGGAGAGAAAATG</genome_strand>
        <mrna_strand>CCCTTCCTAAAAAAATTTCACTCTCTAATTCTACCTTCTTTATTATTATTATTATTTTCTTGCCATATCGTAACAGTTTTGTGGCTCATTTTTTTCAAATGACAAACCATTTGTTTACTTGCATTTATACTTTACTGGTAAAGAGTAGAGAGTGTATTTTCACTTGGGTTTTCTTCGGCTTTTCTTCTGGACTCTTGTTGATGGTCACAAAGAATGCTATTTGGGCTCTTTTTATGTGCATTCTTGCTTTAG..........................................................................................................................................................................................................................GAGGAGCGACAGTAGGGATAGTGACCGGAGCAATTAAGGGACAGACAACAGAGACGGGGCTACTCCGAGGGGCCGGTGTTGGTGCTGTTACCGGACCTGTTACAACTGTCCAATTAGTCGAACTTATACTTAACGGAGAATCATTTTCTAAG................................................................GTTGCACTTGTATGTAGTCTAGTAAATGGAAAGGTATTCATGGAATGGGTTAGTCCTGCTGTTCTCAAGGCTTATCAGTGGCAAGTAAGACATCTTTTATAGCAGAAACTTTTTAATAATTTGTGGTGATTGTTTCTATTAGACACATACATTTTTGGGTTATTATTTTAAAATAAAAATTTCAGGTTACTACTCATGTAGAGTCAAGTTTGAGGGAAATATCTGACATCTTTGATATCAATGCGACCAAAGGGTTATCACAAGAGGTGATAAAGAAGTTGCCAAAGTACTATTTCTGTTCAGTGAGTACATCTCAACAAGTGACTTGTGCAATTTGCCTTCAGGTGATCGTCAGTATAAAAAATTATTTAATCTACAGTGTTTTTTCTAACTCTAATGAATTTACATCAATTATTATATTGTAGGATTTGAAAGACGGGGAGTCGGCAAGGGTGCTACCAAGTTGCAAACATTCATTCCATACACAATGCATAGATGAGTGGCTAACCAGACATGGAAGTTGTCCAATTTGTAGAGTAGAAATCTGAGAGTTAACTAGTAATACTACTAAATCCTAAAGGAGAGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U570301" ref_strand="+" ref_description="SGN-U570301 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157337916|emb|CAO38960.1| (e_value=2e-172) unnamed; (*ATH) AT1G50660.1 (e_value=2e-162)  Symbol: None | expressed protein, similar to liver stage antigen-1 (GI:510184) (Plasmodium falciparum); similar to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) (Dictyostelium discoideum); similar to liver stage antigen (GI:9916) (Plasmodium... ; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=2e-19) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620; ">
      <seq>gcacaatctcttgccggcgcagtcatctgaatttgagagggtgagagagatgagtaatggctgaatctgtgaatcgaaaatgaagatcaccggcgacaaggctgagctaccggcggttacgtttcccggactagatctcttacaaaaatcaacgaaaccgcctcgaaggaaaacgaacaacttcgccgctggagtgaagttgcggagagacattggaggaaatactcctaaagggaggaggagtaggccggaaactcctcttctacggtggaagttcaatgaggatattcatgacaatggttctgtaaaggaggaagcttcgacggtggaggttgatcggaaatgtagtcggaataatggtaggactgtggtttctgttaggaaattaggtgcgggactgtttaggcagcagcagctgccggaagtaaaaaacgatcacaagtttgggtttcaggctggtcgggttgagatgcattttcatcatcgcagtaaagtgcatgactctctcattaatgatccagtgcagagtcctcggtctgtctttggtccaactaatggcctttttcacaagtttgaaacctcacttcagttttcccattctgctatggagggggcaacaaagtgggacccagttggctggacaacagcggtggaaacaaagaagatatatgggtctcagaagcttcttgatcaccaagtgaatactgcttcaatgatttcttctcttgaggcagaactagaatgtgctcgtgcccgagttcatcaacttgagacggagcggcattcatcgaaaaagaaactcaagcagttcttgaggaaactcagtgaagaaaaagcagcatggcggagcaaagagcatgagaaaatccgggcaattatggatgaaatgagagctgacttctcccgggaaaggaaaaaccgaaagaggctggaaattgtcaattcccaattagttaatgaattggctgatgccaagttattagcaaaacgttatttgcaaaatttcgaaaaggaaaaacaggctagagggttgatagaagaagtgtgcgatgaattggccaaagaacttggagaagacaaggctgaagttgaggaaatgaagagagaatctctgaagttcacagaggaagtagatgaagaaagaaagatgttgcagatggctgaggtttggcgtgaggaacgggtccagatgaaactagttgatgccaaggtgatgcttgaagagaagtattcccaaatgaacaaactcattggagaactagaatcatttttggattccagaggtttgagttttgatgtggagaagatgaaaagagctgagcaactccaacaggccgctgcctctgttagcattcgtgatattagagaactcacttatgaaccaccaaatcaagatgatattctttccgtttttgaggacgttcattttgttgaacctgatgaaaaggatatccagccatgtacatttagtcctcgctctctcagtcctgatggtgttgtttacgactttcgcagaatttcacatgcatatgtcaatcagagtgataatttagaggaagagggaagtgagtgggaaacggtgaccaatcttgaggagcaagggtccaactattctcttgaaggaagcatttcatccgtgaacaagaattgccggcacagcaatgtatcaagaagtagagcagactcagagggaattggtgatgatggcgcatcggtttcagagattagtgaagtttgttctggaccagctcggcaacttacagagttgtcatctgcatctaaactttggaagtcacgcccgagtaatggagacaatttcaaaataaaatcactagaaggatctaaagggaggctgtcaaatgggaccattctttctcgggatcatggttctagtaaaggtggctttagcccctcggaacttggccaggagtggagctcacctgagtctggcaactcacaaatagcacgcgggatgaaaggttgcattgaatggccgcaaaactctcagaagaaaagcttaaaaacaaagttattgcaggcaagaacagagagccagaaggtacagctgcgccaggtcttgaagcagaagatctgagatgagcgttcttaatacatgagctctgaagcctcctgctaacagatattgtggaaagctccaaacttcaaagttgtattatcattttctccaaatctaattaattaaatagtatatttaatttaatatcacattttatttatgtaatgtagaattaaaagtccaaccctttaatttcttagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="77962" stop="73827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77662" g_stop="77209" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77208" i_stop="76575" i_length="634">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76574" g_stop="76458" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="571" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76457" i_stop="75836" i_length="622">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75835" g_stop="74127" g_length="1709"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="2280" r_length="1709" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U570301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77662" e_stop="77209"/>
          <exon e_start="76574" e_stop="76458"/>
          <exon e_start="75835" e_stop="74127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATCTCTTGCCGGCGCAGTCATCTGAATTTGAGAGGGTGAGAGAGATGAGTAATGGCTGAATCTGTGAATCGAAAATGAAGATCACCGGCGACAAGGCTGAGCTACCGGCGGTTACGTTTCCCGGACTAGATCTCTTACAAAAATCAACGAAACCGCCTCGAAGGAAAACGAACAACTTCGCCGCTGGAGTGAAGTTGCGGAGAGACATTGGAGGAAATACTCCTAAAGGGAGGAGGAGTAGGCCGGAAACTCCTCTTCTACGGTGGAAGTTCAATGAGGATATTCATGACAATGGTTCTGTAAAGGAGGAAGCTTCGACGGTGGAGGTTGATCGGAAATGTAGTCGGAATAATGGTAGGACTGTGGTTTCTGTTAGGAAATTAGGTGCGGGACTGTTTAGGCAGCAGCAGCTGCCGGAAGTAAAAAACGATCACAAGTTTGGGTTTCAGGTATTTTTCATCAAATTGAGTTTTAAGTTTATGCTAATTTAGGGCTTCTGTAACTTGGTTGTTGCTATATTGATATTAATTGTGGATCTGTCATTTATATTATAAGGTACATTGACTTGAAATATTGACAAAAAAAATTATGCTTGGGATAATTAGGAGTAACAGAGAAAAAATGGAATCATTTCAGTAGTCTACTATTAGTAGTTTTTTCAATTGAGATTTGTCCTTTTAGACCCTCTTGAATAACTGATTATCAATTAATACACAGCAAAATATAATATTTTTCGTTATTTGAAACTAATTGATTCTTACCGATTTGCTCGTTAGATGGATTAGTGGATACTTTTTTTGAATTTTGTTGAATTTTGACATAGCAATTACGGTAGAGTAGTTAGGAACGAAGGAGAAAAATTTAACATTTTAGTATTCTATTTTCGTTAATTCGATATAGAAGGAGTACTTTCATGCCGTTTTCTTTAAGTTTTCCTATTCTTGTATTTGTCTGTGTTCCATATTATTACCTTAGAGTTAAGAGTAAAGAGTAACTTGAAGGATGTTTTGTTGTTTTAGATCCCAAGTTGACAAGGATTGTGCACCATTTTGGAGTTCAATAGTTTTTCTTTCTTCCATGCAGGCTGGTCGGGTTGAGATGCATTTTCATCATCGCAGTAAAGTGCATGACTCTCTCATTAATGATCCAGTGCAGAGTCCTCGGTCTGTCTTTGGTCCAACTAATGGCCTTTTTCACAAGGTATGTGACTTTTTCTTAAGATGTTCCGAGTCTTTTAACTATTTAAGCTCATTATATGGGAAACTTCTAGAGTTTTCAGGACCCAGAGACATAGTCCTATACAATGTAGTAGGTGCAAGGAAATGAGATCACCCCTTATAATTCTCTCATAATATTATAAATGCTGTTTTTGCTGTCATAACCCTTACATAGGAGGTCATAGAGTTGTCTAGAACATGGACTTTGCACAGTAGGTGCAAGAGATGAGATTCCGTCTTATGTTGGAGGGATGTAGTTCACACGGAGTAGCTGAACATTGTCTTTCCCTTTATATGGGTAAGTTGGTGTTGCCTGAGACACGTCTTTTACAATATAGTAGGTGCAGGAAACTAGACTCACTTATATTATAGAAATCTTAGAGTATTGGGTTTATATTCTTATGCTATGGAATACATACAGGAAGACTGACCTTTTAAGGGTCAGGATTCTTGGCTGTCATCATTCTGCAAAATTGTTTGGGTACTTTAATTTTTATGATACTGCAACTCTCTTGATCTTTGTATTTAAAGTTTAAACACTAGTCGTCTATTTCAATTGTTTCTGGTTATTATCTAATCTTGTTGCAATTCTCTACAAAATGTAGTTTGAAACCTCACTTCAGTTTTCCCATTCTGCTATGGAGGGGGCAACAAAGTGGGACCCAGTTGGCTGGACAACAGCGGTGGAAACAAAGAAGATATATGGGTCTCAGAAGCTTCTTGATCACCAAGTGAATACTGCTTCAATGATTTCTTCTCTTGAGGCAGAACTAGAATGTGCTCGTGCCCGAGTTCATCAACTTGAGACGGAGCGGCATTCATCGAAAAAGAAACTCAAGCAGTTCTTGAGGAAACTCAGTGAAGAAAAAGCAGCATGGCGGAGCAAAGAGCATGAGAAAATCCGGGCAATTATGGATGAAATGAGAGCTGACTTCTCCCGGGAAAGGAAAAACCGAAAGAGGCTGGAAATTGTCAATTCCCAATTAGTTAATGAATTGGCTGATGCCAAGTTATTAGCAAAACGTTATTTGCAAAATTTCGAAAAGGAAAAACAGGCTAGAGGGTTGATAGAAGAAGTGTGCGATGAATTGGCCAAAGAACTTGGAGAAGACAAGGCTGAAGTTGAGGAAATGAAGAGAGAATCTCTGAAGTTCACAGAGGAAGTAGATGAAGAAAGAAAGATGTTGCAGATGGCTGAGGTTTGGCGTGAGGAACGGGTCCAGATGAAACTAGTTGATGCCAAGGTGATGCTTGAAGAGAAGTATTCCCAAATGAACAAACTCATTGGAGAACTAGAATCATTTTTGGATTCCAGAGGTTTGAGTTTTGATGTGGAGAAGATGAAAAGAGCTGAGCAACTCCAACAGGCCGCTGCCTCTGTTAGCATTCGTGATATTAGAGAACTCACTTATGAACCACCAAATCAAGATGATATTCTTTCCGTTTTTGAGGACGTTCATTTTGTTGAACCTGATGAAAAGGATATCCAGCCATGTACATTTAGTCCTCGCTCTCTCAGTCCTGATGGTGTTGTTTACGACTTTCGCAGAATTTCACATGCATATGTCAATCAGAGTGATAATTTAGAGGAAGAGGGAAGTGAGTGGGAAACGGTGACCAATCTTGAGGAGCAAGGGTCCAACTATTCTCTTGAAGGAAGCATTTCATCCGTGAACAAGAATTGCCGGCACAGCAATGTATCAAGAAGTAGAGCAGACTCAGAGGGAATTGGTGATGATGGCGCATCGGTTTCAGAGATTAGTGAAGTTTGTTCTGGACCAGCTCGGCAACTTACAGAGTTGTCATCTGCATCTAAACTTTGGAAGTCACGCCCGAGTAATGGAGACAATTTCAAAATAAAATCACTAGAAGGATCTAAAGGGAGGCTGTCAAATGGGACCATTCTTTCTCGGGATCATGGTTCTAGTAAAGGTGGCTTTAGCCCCTCGGAACTTGGCCAGGAGTGGAGCTCACCTGAGTCTGGCAACTCACAAATAGCACGCGGGATGAAAGGTTGCATTGAATGGCCGCAAAACTCTCAGAAGAAAAGCTTAAAAACAAAGTTATTGCAGGCAAGAACAGAGAGCCAGAAGGTACAGCTGCGCCAGGTCTTGAAGCAGAAGATCTGAGATGAGCGTTCTTAATACATGAGCTCTGAAGCCTCCTGCTAACAGATATTGTGGAAAGCTCCAAACTTCAAAGTTGTATTATCATTTTCTCCAAATCTAATTAATTAAATAGTATATTTAATTTAATATCATATTTTATTTATGTAATGTAGAATTAAAAGTCCAACCCTTTAATTTCTTAGTTA</genome_strand>
        <mrna_strand>GCACAATCTCTTGCCGGCGCAGTCATCTGAATTTGAGAGGGTGAGAGAGATGAGTAATGGCTGAATCTGTGAATCGAAAATGAAGATCACCGGCGACAAGGCTGAGCTACCGGCGGTTACGTTTCCCGGACTAGATCTCTTACAAAAATCAACGAAACCGCCTCGAAGGAAAACGAACAACTTCGCCGCTGGAGTGAAGTTGCGGAGAGACATTGGAGGAAATACTCCTAAAGGGAGGAGGAGTAGGCCGGAAACTCCTCTTCTACGGTGGAAGTTCAATGAGGATATTCATGACAATGGTTCTGTAAAGGAGGAAGCTTCGACGGTGGAGGTTGATCGGAAATGTAGTCGGAATAATGGTAGGACTGTGGTTTCTGTTAGGAAATTAGGTGCGGGACTGTTTAGGCAGCAGCAGCTGCCGGAAGTAAAAAACGATCACAAGTTTGGGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCGGGTTGAGATGCATTTTCATCATCGCAGTAAAGTGCATGACTCTCTCATTAATGATCCAGTGCAGAGTCCTCGGTCTGTCTTTGGTCCAACTAATGGCCTTTTTCACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAACCTCACTTCAGTTTTCCCATTCTGCTATGGAGGGGGCAACAAAGTGGGACCCAGTTGGCTGGACAACAGCGGTGGAAACAAAGAAGATATATGGGTCTCAGAAGCTTCTTGATCACCAAGTGAATACTGCTTCAATGATTTCTTCTCTTGAGGCAGAACTAGAATGTGCTCGTGCCCGAGTTCATCAACTTGAGACGGAGCGGCATTCATCGAAAAAGAAACTCAAGCAGTTCTTGAGGAAACTCAGTGAAGAAAAAGCAGCATGGCGGAGCAAAGAGCATGAGAAAATCCGGGCAATTATGGATGAAATGAGAGCTGACTTCTCCCGGGAAAGGAAAAACCGAAAGAGGCTGGAAATTGTCAATTCCCAATTAGTTAATGAATTGGCTGATGCCAAGTTATTAGCAAAACGTTATTTGCAAAATTTCGAAAAGGAAAAACAGGCTAGAGGGTTGATAGAAGAAGTGTGCGATGAATTGGCCAAAGAACTTGGAGAAGACAAGGCTGAAGTTGAGGAAATGAAGAGAGAATCTCTGAAGTTCACAGAGGAAGTAGATGAAGAAAGAAAGATGTTGCAGATGGCTGAGGTTTGGCGTGAGGAACGGGTCCAGATGAAACTAGTTGATGCCAAGGTGATGCTTGAAGAGAAGTATTCCCAAATGAACAAACTCATTGGAGAACTAGAATCATTTTTGGATTCCAGAGGTTTGAGTTTTGATGTGGAGAAGATGAAAAGAGCTGAGCAACTCCAACAGGCCGCTGCCTCTGTTAGCATTCGTGATATTAGAGAACTCACTTATGAACCACCAAATCAAGATGATATTCTTTCCGTTTTTGAGGACGTTCATTTTGTTGAACCTGATGAAAAGGATATCCAGCCATGTACATTTAGTCCTCGCTCTCTCAGTCCTGATGGTGTTGTTTACGACTTTCGCAGAATTTCACATGCATATGTCAATCAGAGTGATAATTTAGAGGAAGAGGGAAGTGAGTGGGAAACGGTGACCAATCTTGAGGAGCAAGGGTCCAACTATTCTCTTGAAGGAAGCATTTCATCCGTGAACAAGAATTGCCGGCACAGCAATGTATCAAGAAGTAGAGCAGACTCAGAGGGAATTGGTGATGATGGCGCATCGGTTTCAGAGATTAGTGAAGTTTGTTCTGGACCAGCTCGGCAACTTACAGAGTTGTCATCTGCATCTAAACTTTGGAAGTCACGCCCGAGTAATGGAGACAATTTCAAAATAAAATCACTAGAAGGATCTAAAGGGAGGCTGTCAAATGGGACCATTCTTTCTCGGGATCATGGTTCTAGTAAAGGTGGCTTTAGCCCCTCGGAACTTGGCCAGGAGTGGAGCTCACCTGAGTCTGGCAACTCACAAATAGCACGCGGGATGAAAGGTTGCATTGAATGGCCGCAAAACTCTCAGAAGAAAAGCTTAAAAACAAAGTTATTGCAGGCAAGAACAGAGAGCCAGAAGGTACAGCTGCGCCAGGTCTTGAAGCAGAAGATCTGAGATGAGCGTTCTTAATACATGAGCTCTGAAGCCTCCTGCTAACAGATATTGTGGAAAGCTCCAAACTTCAAAGTTGTATTATCATTTTCTCCAAATCTAATTAATTAAATAGTATATTTAATTTAATATCACATTTTATTTATGTAATGTAGAATTAAAAGTCCAACCCTTTAATTTCTTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U601440" ref_strand="+" ref_description="SGN-U601440 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tgctaattaacaaaatctagggtttataatttcaccacaactactgtttgtttatctcccattttttgaattcttcttatcttctaacaggctaaaattcaagctctggacaggataaagtcgctgtgtcttatggcatgcatttgttgctttgggcagtcacatgggtatcagatatgcttttctgagttgtcgttaggattgtcccttatttagaggctttagttgtactgctctgccttttcgcgatactagagagctgatggagaaatgacgtaatacagctatcctgcaacttggacacatgataaaagaattccttcctacatttttgttcttttcagtctagagacataattcaccatgaaaaataaacttaggtggcgaaaagaagggaagatagaaagaggaattcggaagcaattccttttatgcgaatcctacttagccttggatattaaccaacaacatgtccaatgtaatttcataagcaggctttgaggagggtaagatgtacctctacctttctgcggtataaaggttgtttccagtagaccttggctcaaaagaaaagattttgaagtaaccatccatgaagttataatcgttttctcctagtaatatttacttgtcngttcctaatttttttttaatcatcatattcggcttatttnatgtttatgccagtttantctaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="84919" stop="87757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85219" g_stop="85321" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85322" i_stop="86858" i_length="1537">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86859" g_stop="87457" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="701" r_length="598" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U601440" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85219" e_stop="85321"/>
          <exon e_start="86859" e_stop="87457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTAACAAAATCTAGGGTTTATAATTTCACCACAACTACTGTTTGTTTATCTCCCATTTTTTGAATTCTTCTTATCTTCTAACAGGCTAAAATTCAAGGTATGTTTTTTTTTTCTTTTTAGGTTTATTTATGCATTTTATTCTTTTTTGAAGGCAACGGTTGATTTTGTTTTTTAATTGTGTTAAAGATTGAAATTTGTATGTTTTTATGCATTTTGCATTTTAATTTTTTTTCGTTGAAAATAAATCTAATGTTTGTTCGTTCAGTTTCAGTATTTCGCAAGTAGTTATTTTGCTTCTGGAATAAATAGACCTTACCTTCAAACTTAATAGAATTACTAAAAGATGTCAAAGAATTTATTTTTTTTAAGTTTGTTTTTCTAGTATTCATATTCTAATTTATTTATAGTTGATTTTTTTATTTAATTATTCCCTTTTCAATTTCTAATACATCCAACTCTTGGAATACATTTTCAGATTTATCATTCTTTTGTTTTTCTAAAATAATATCAAGTGTTTCTAATAAACAACTAAAAAAACAATATCAGTATATGAAATATATTTCAAAAGTAACGAATTCTAGATGCAAAATATAAGAAAGAATAATGACATATGATTCATTAGTTGATAACTAGATGTTAGTTTTCATAGCTTCAATAAACTTGATGCAATGATTGGAATTTTGAAGAGAAAAAAAAGGCATAATGCATAAATTTGCCCTTTGACTTGGTCGTGTTTCACATTTATGTCCTTCAATTTGAGTGTGCACAAGTGAACATTTTAACTTTGTACAAAATTGAATTAGTAGACACATGCATCATGAGTCATAAGGGACATAATACACATAGAACACCGGTAGGATGAAAATTGCCGCCACGTAGGTCACGTCTGTTGGTAGAGCTTTCACATCTACGCATAAAATCCATTTTGCCCTTCCATTTTGTTCTTAAGGTAGTTGAATCGGAATCCGTGTGATTGTCTGAAAGTAGTTTCAAATATTCTTTGCTCTCCAGTTAGTATACTTCCACTAAAAATGGAAGATGCCTTGGTAGTTTATTTCTAGCTCTTCAGCTCCGCTGGTGAATCAGTAAGCATACTTTGAGTTTGTTTTCTCATAGCACCTGATATCATATAAAAAGATAAACAATCGGCAAAAGTGGCATCACAGTATCTTAGGTCTAGTAAACTTATTATTTATCTTGACTGCATTGGAGGAGAAATACTCGTGTCTTGTTTAATCTCGTTTTAGAATTGCATGCATATATGAAGAATTGTAGTACTTGATGATTTGCAGTCATCTTCAGTTTTTTCCCGCTTCTTGTTGGTTCAAAAACCTCGGGTGTACATTTTCCTATTGCAATATTTTGATGAGATAGTTCCGTGACTTGGGCCTTGTGTTATTCGTTAATTGTACTGTCTGCTGTTCATTATTGGATTCGATTAAGTACTTTCAGATATTAATTTTCTTCAACAATCATAACAAAATTACATGTTCATATTCATGTAAATCTGGTTTAAATATTATCAATTTCTTCCTTAACTTATCACTTTGGCACATTTCTGTTGCTTTTTTATGTTTATTATTCGCCCAGCAATTTTGTCGCACATGTGCCTAAAATTTCCAAATTGTTCTCAGCTCTGGACAGGATAAAGTCGCTGTGTCTTATGGCATGCATTTGTTGCTTTGGGCAGTCACATGGGTATCAGATATGCTTTTCTGAGTTGTCGTTAGGATTGTCCCTTATTTAGAGGCTTTAGTTGTACTGCTCTGCCTTTTCGCGATACTAGAGAGCTGATGGAGAAATGACGTAATACAGCTATCCTGCAACTTGGACACATGATAAAAGAATTCCTTCCTACATTTTTGTTCTTTTCAGTCTAGAGACATAATTCACCATGAAAAATAAACTTAGGTGGCGAAAAGAAGGGAAGATAGAAAGAGGAATTCGGAAGCAATTCCTTTTATGCGAATCCTACTTAGCCTTGGATATTAACCAACAACATGTCCAATGTAATTTCATAAGCAGGCTTTGAGGAGGGTAAGATGTACCTCTACCTTTCTGCGGTATAAAGGTTGTTTCCAGTAGACCTTGGCTCAAAAGAAAAGATTTTGAAGTAACCATCCATGAAGTTATAATCGTTTTCTCCTAGTAATATTTACTTGTCTGTTCCTAATTTTTTTTTTAATCATCATATTCGGCTTATTTGATGTTTATGCCAGTTTAGTCTAATTTC</genome_strand>
        <mrna_strand>TGCTAATTAACAAAATCTAGGGTTTATAATTTCACCACAACTACTGTTTGTTTATCTCCCATTTTTTGAATTCTTCTTATCTTCTAACAGGCTAAAATTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGACAGGATAAAGTCGCTGTGTCTTATGGCATGCATTTGTTGCTTTGGGCAGTCACATGGGTATCAGATATGCTTTTCTGAGTTGTCGTTAGGATTGTCCCTTATTTAGAGGCTTTAGTTGTACTGCTCTGCCTTTTCGCGATACTAGAGAGCTGATGGAGAAATGACGTAATACAGCTATCCTGCAACTTGGACACATGATAAAAGAATTCCTTCCTACATTTTTGTTCTTTTCAGTCTAGAGACATAATTCACCATGAAAAATAAACTTAGGTGGCGAAAAGAAGGGAAGATAGAAAGAGGAATTCGGAAGCAATTCCTTTTATGCGAATCCTACTTAGCCTTGGATATTAACCAACAACATGTCCAATGTAATTTCATAAGCAGGCTTTGAGGAGGGTAAGATGTACCTCTACCTTTCTGCGGTATAAAGGTTGTTTCCAGTAGACCTTGGCTCAAAAGAAAAGATTTTGAAGTAACCATCCATGAAGTTATAATCGTTTTCTCCTAGTAATATTTACTTGTCNGTTCCTAA-TTTTTTTTTAATCATCATATTCGGCTTATTTNATGTTTATGCCAGTTTANTCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U599233" ref_strand="-" ref_description="SGN-U599233 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15239765|ref|NP_200298.1| (e_value=8e-40) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G54870.1 (e_value=8e-42) | Symbol: None | expressed protein, strong similarity to unknown protein (pir::T04825) | chr5:22306361-22309025 FORWARD | Aliases: MBG8.14, MBG8_14; ">
      <seq>tgggaaatcaccttcttgtattgcttttgttcttgaaatgtacaaaggaagcaggactatttggtccacttgcaagttcaattcaggttacagaattcccgataaaaaatgcttactcactgaagttttttgaaaacaacacgaatcggttgcctatgtggtgcaatgcggatgacccagtgaagcttcctttttgtcaaattttagggaagtaccggatggaattgcctggatccaatacaatggatgtatacgcccatatgaatgaaaagtgcccatcaatgcctccaaaatactacaggccccaaagttgttgacaatgatttttatggccagctattttactgtagtaaggtatgtacaaggatggttgttccaatgctttacaggttagtgtgacaattgtgttggatttataccgaaagccatagggaaaaaaaaagaatgttaatgaacatgtatgtcagcagacttggaattgaagtgtaaatattatagtagtagttttgttgatttgttctgtctgaaaaactttatagatcctgaaacaatttgcagttaatatacccccaaatttgttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="90848" stop="89471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90548" g_stop="90449" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90448" i_stop="90252" i_length="197">
            <donor d_prob="0.686" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90251" g_stop="89770" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="583" r_length="482" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U599233" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599233" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90548" e_stop="90449"/>
          <exon e_start="90251" e_stop="89770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAATCAACATCTTGTATTGCTTTTGTTCTTGAAATGTAC-AAGGAAGCAGGACTATTTGGTCCACTTGCAAGTTCAATTCAGGTTACAGAATTCACGGTGAGTTTTTTAGATGGATTTTGAAGTTCCATTTTCAGGGTTGGGGGCTTTTTCTTTTCTTTTTGCTGCATCTAACTCAAAGGCATATAGAGTCTTATATCAAATTTCATTGAGATACTAATAAACTGGTAGGGTCTGCAGTCCATGCTTTCATGAGGTAATGGTTTTAAGTTCTCACTTGTTGTTTCTAAGTGCAGATAAAAGATGCTTACTCACTGAAGTTTTTTGAAAACAACACGAATCGGTTGCCTATGTGGTGCAATGCGGATGACACAGTGAAGCTTCCTTTCTGTCAAATTCTAGGGAAGTACCGGATGGAATTGCCTGGATACAATACAATGGATGTATACGCCCATATGAATGAAAAGTGCCCATCAATGCCTCCAAAATACTACAGGCCACAAAGTTGTTGACAATGATTTTTATGGCCAGCTATCTTACTGTAGTAAGGTATGTACAAGGATGGTTGTTCCAATGCTTTACAGGTTAGTGTGACAATTGTGTTGGATTTATACCGAAAGCCATAGGGAAAAAGAGAGAATGCTAATGAACATGTATGTCAGCAGACTTGGAATTGAAGTGTAAATATTATAGTAGTAGTTTTGTTGATTTGTTCTGTCTGAAAAACTTTATAGATCCTGAAACAATCTGCAGTTAATATAACCACAAATTTGTTCCA</genome_strand>
        <mrna_strand>TGGGAAATCACCTTCTTGTATTGCTTTTGTTCTTGAAATGTACAAAGGAAGCAGGACTATTTGGTCCACTTGCAAGTTCAATTCAGGTTACAGAATTCCCG.....................................................................................................................................................................................................ATAAAAAATGCTTACTCACTGAAGTTTTTTGAAAACAACACGAATCGGTTGCCTATGTGGTGCAATGCGGATGACCCAGTGAAGCTTCCTTTTTGTCAAATTTTAGGGAAGTACCGGATGGAATTGCCTGGATCCAATACAATGGATGTATACGCCCATATGAATGAAAAGTGCCCATCAATGCCTCCAAAATACTACAGGCCCCAAAGTTGTTGACAATGATTTTTATGGCCAGCTATTTTACTGTAGTAAGGTATGTACAAGGATGGTTGTTCCAATGCTTTACAGGTTAGTGTGACAATTGTGTTGGATTTATACCGAAAGCCATAGGGAAAAAAAAAGAATGTTAATGAACATGTATGTCAGCAGACTTGGAATTGAAGTGTAAATATTATAGTAGTAGTTTTGTTGATTTGTTCTGTCTGAAAAACTTTATAGATCCTGAAACAATTTGCAGTTAATATACCCCCAAATTTGTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U594066" ref_strand="+" ref_description="SGN-U594066 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15236947|ref|NP_194432.1| (e_value=2e-44) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G27020.1 (e_value=2e-46) | Symbol: None | expressed protein, gene F20P5.12 of BAC F20P5 from Arabidopsis thalianachromosome 1, PID:g2194125 | chr4:13568439-13571480 REVERSE | Aliases: F10M23.360, F10M23_360; ">
      <seq>agtatgaactgacaaaagatgattccaatccacatattgcattgctgcctttgcaccctgatctccgtgccaagtttaatcagactgctgcttgggaatatgcacaaagcatggaaggcaaaccatatggtttccataacctaatatttagctggatagatactattgacggaaattatccctctcccttggatgctcatctggttgcttctgtcatgactgtttggaatcacttacagcccgcatatgcagctaacatgtggaatgaagccttaaacaagcgacttggaactcgggtcatatctgttttctttaattagtgagctgctatttattgagataaaagttggacaaagatactcatagaagctgttcatctaaagataatgcatgcctccattaagtaactagtctaattaagtcgagcaaattactatgaaatgaagaaagctcattaacataactatagtttttcctgaaaatgcacaagggttggttaaaagcatgctttcaaaattctcgagaaaaaatcctagagagtgcaggcttgttccgtacatctgatatgatcgacaactagtgttgaatgaggatctgaattttgtgtccatgcagggccttgatcttcctgatattcttgtcgaaattgaaaagcgtgggtcatcttttgccaaattgttgactatcccagaacaggatgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="92388" stop="90260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92088" g_stop="91886" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91885" i_stop="91062" i_length="824">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91061" g_stop="90560" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="705" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U594066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92088" e_stop="91886"/>
          <exon e_start="91061" e_stop="90560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAACTGACAAAAGATGATTCCAATCCACATATTGCATTGCTGCCTTTGCACCCTGATCTCCGTGCCAAGTTTAATCAGACTGCTGCTTGGGAATATGCACAAAGCATGGAAGGCAAACCATATGGTTTCCATAACCTAATATTTAGCTGGATAGATACTATTGACGGAAATTATCCCTCTCCCTTGGATGCTCATCTGGTATGCACCATCTCTTCTGTCTGATTGTAGTTGTGCCAATTTTTCTGTTGCTTTGAAGTGTTTCCTTCCATAACCTTTTAATAATCCTTTTACTTTGTAATTCTTTTCATTTGACGCTTTATTCAGTTTTTCTGCTTTGGCTCAAGCATTGACCTATGTTCTTTCAGATAAAGTTTGTTACTGACTGGTGAATTTAAGATTCTAGACGTGTGAACTGTGAACTGAAATAAGTGATTAGCATGCATGTGCTTTTTCGTAGAAGACTGTCGAGCTGGTCAGGTTTTGATGTGTTGAACAATATGTTGAATTGGTTTTGATTTTAGTTTTATGTTTTTTTAGAAGAGATCTTATTTTTACATATAAGAGATTCCAATAACACACAAGATCTTTGCATGATAATTTTCTTCCATTCAAATTGTATAGCGTCCAAGTGACCGATTTCCACTTATTAGCTTATGATAGCTTAAAGTTTATCAGAAGGTTCATGCCATATTTTGACTGAGATGAATTGGTATCAGCAGTTGGTTTCGTGGAAATATTATCGGACTCTGAACTGCCAATGGTCAGTGAGGATTCAAAATATAAACTTATGCACCGTTATGCGGATGGTCTTTTGTGCAAGAACATCAAAATATCATATGATGAAGCTCACACTTTTAATTACTTTTGAGATGTATGAAAGAAGGTTGAACATGAGAAGAATAATGAGTGTATAATATGTGGCATGGAAAAAGTGCTACTGTATTGCTTTAGGCCTCTTCAATTTGGTGCATTTGTGAAATTTCACCTGCTTAAATTTGTTGTTGATATGTTACTTGGTACAGGTTGCTTCTGTCATGACTGTTTGGAATCACTTACAGCCCGCATATGCAGCTAACATGTGGAATGAAGCCTTAAACAAGCGACTTGGAACTCGGGTCATATCTGTTTTCTTTAATTAGTGAGCTGCTATTTATTGAGATAAAAGTTGGACAAAGATACTCATAGAAGCTGTTCATCTAAAGATAATGCATGCCTCCATTAAGTAACTAGTCTAATTAAGTCGAGCAAATTACTATGAAATGAAGAAAGCTCATTAACATAACTATAGTTTTTCCTGAAAATGCACAAGGGTTGGTTAAAAGCATGCTTTCAAAATTCTCGAGAAAAAATCCTAGAGAGTGCAGGCTTGTTCCGTACATCTGATATGATCGACAACTAGTGTTGAATGAGGATCTGAATTTTGTGTCCATGCAGGGCCTTGATCTTCCTGATATTCTTGTCGAAATTGAAAAGCGTGGGTCATCTTTTGCCAAATTGTTGACTATCCCAGAACAGGATGACTGG</genome_strand>
        <mrna_strand>AGTATGAACTGACAAAAGATGATTCCAATCCACATATTGCATTGCTGCCTTTGCACCCTGATCTCCGTGCCAAGTTTAATCAGACTGCTGCTTGGGAATATGCACAAAGCATGGAAGGCAAACCATATGGTTTCCATAACCTAATATTTAGCTGGATAGATACTATTGACGGAAATTATCCCTCTCCCTTGGATGCTCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAATCACTTACAGCCCGCATATGCAGCTAACATGTGGAATGAAGCCTTAAACAAGCGACTTGGAACTCGGGTCATATCTGTTTTCTTTAATTAGTGAGCTGCTATTTATTGAGATAAAAGTTGGACAAAGATACTCATAGAAGCTGTTCATCTAAAGATAATGCATGCCTCCATTAAGTAACTAGTCTAATTAAGTCGAGCAAATTACTATGAAATGAAGAAAGCTCATTAACATAACTATAGTTTTTCCTGAAAATGCACAAGGGTTGGTTAAAAGCATGCTTTCAAAATTCTCGAGAAAAAATCCTAGAGAGTGCAGGCTTGTTCCGTACATCTGATATGATCGACAACTAGTGTTGAATGAGGATCTGAATTTTGTGTCCATGCAGGGCCTTGATCTTCCTGATATTCTTGTCGAAATTGAAAAGCGTGGGTCATCTTTTGCCAAATTGTTGACTATCCCAGAACAGGATGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571229" ref_strand="+" ref_description="SGN-U571229 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15236947|ref|NP_194432.1| (e_value=1e-44) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G27020.1 (e_value=1e-46) | Symbol: None | expressed protein, gene F20P5.12 of BAC F20P5 from Arabidopsis thalianachromosome 1, PID:g2194125 | chr4:13568439-13571480 REVERSE | Aliases: F10M23.360, F10M23_360; ">
      <seq>agtatgaactgacaaaagatgattccaatccacatattgcattgctgcctttgcaccctgatctccgtgccaagtttaatcagactgctgcttgggaatatgcacaaagcatggaaggcaaaccatatggtttccataacctaatatttagctggatagatactattgacggaaattatccctctcccttggatgctcatctggttgcttctgtcatgactgtttggaatcacttacagcccgcatatgcagctaacatgtggaatgaagccttaaacaagcgacttggaactcgggtcatatctgttttctttaattagtgagctgctatttattgagataaaagttggacaaagatactcatagaagctgttcatctaaagataatgcatgcctccattaagtaactagtctaattaagtcgagcaaattactatgaaatgaagaaagctcattaacataactatagtttttcctgaaaatgcacaagggttggttaaaagcatgctttcaaaattctcgagaaaaaatcctagagagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="92388" stop="90423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92088" g_stop="91886" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91885" i_stop="91062" i_length="824">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91061" g_stop="90723" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="542" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U571229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92088" e_stop="91886"/>
          <exon e_start="91061" e_stop="90723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAACTGACAAAAGATGATTCCAATCCACATATTGCATTGCTGCCTTTGCACCCTGATCTCCGTGCCAAGTTTAATCAGACTGCTGCTTGGGAATATGCACAAAGCATGGAAGGCAAACCATATGGTTTCCATAACCTAATATTTAGCTGGATAGATACTATTGACGGAAATTATCCCTCTCCCTTGGATGCTCATCTGGTATGCACCATCTCTTCTGTCTGATTGTAGTTGTGCCAATTTTTCTGTTGCTTTGAAGTGTTTCCTTCCATAACCTTTTAATAATCCTTTTACTTTGTAATTCTTTTCATTTGACGCTTTATTCAGTTTTTCTGCTTTGGCTCAAGCATTGACCTATGTTCTTTCAGATAAAGTTTGTTACTGACTGGTGAATTTAAGATTCTAGACGTGTGAACTGTGAACTGAAATAAGTGATTAGCATGCATGTGCTTTTTCGTAGAAGACTGTCGAGCTGGTCAGGTTTTGATGTGTTGAACAATATGTTGAATTGGTTTTGATTTTAGTTTTATGTTTTTTTAGAAGAGATCTTATTTTTACATATAAGAGATTCCAATAACACACAAGATCTTTGCATGATAATTTTCTTCCATTCAAATTGTATAGCGTCCAAGTGACCGATTTCCACTTATTAGCTTATGATAGCTTAAAGTTTATCAGAAGGTTCATGCCATATTTTGACTGAGATGAATTGGTATCAGCAGTTGGTTTCGTGGAAATATTATCGGACTCTGAACTGCCAATGGTCAGTGAGGATTCAAAATATAAACTTATGCACCGTTATGCGGATGGTCTTTTGTGCAAGAACATCAAAATATCATATGATGAAGCTCACACTTTTAATTACTTTTGAGATGTATGAAAGAAGGTTGAACATGAGAAGAATAATGAGTGTATAATATGTGGCATGGAAAAAGTGCTACTGTATTGCTTTAGGCCTCTTCAATTTGGTGCATTTGTGAAATTTCACCTGCTTAAATTTGTTGTTGATATGTTACTTGGTACAGGTTGCTTCTGTCATGACTGTTTGGAATCACTTACAGCCCGCATATGCAGCTAACATGTGGAATGAAGCCTTAAACAAGCGACTTGGAACTCGGGTCATATCTGTTTTCTTTAATTAGTGAGCTGCTATTTATTGAGATAAAAGTTGGACAAAGATACTCATAGAAGCTGTTCATCTAAAGATAATGCATGCCTCCATTAAGTAACTAGTCTAATTAAGTCGAGCAAATTACTATGAAATGAAGAAAGCTCATTAACATAACTATAGTTTTTCCTGAAAATGCACAAGGGTTGGTTAAAAGCATGCTTTCAAAATTCTCGAGAAAAAATCCTAGAGAGTG</genome_strand>
        <mrna_strand>AGTATGAACTGACAAAAGATGATTCCAATCCACATATTGCATTGCTGCCTTTGCACCCTGATCTCCGTGCCAAGTTTAATCAGACTGCTGCTTGGGAATATGCACAAAGCATGGAAGGCAAACCATATGGTTTCCATAACCTAATATTTAGCTGGATAGATACTATTGACGGAAATTATCCCTCTCCCTTGGATGCTCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAATCACTTACAGCCCGCATATGCAGCTAACATGTGGAATGAAGCCTTAAACAAGCGACTTGGAACTCGGGTCATATCTGTTTTCTTTAATTAGTGAGCTGCTATTTATTGAGATAAAAGTTGGACAAAGATACTCATAGAAGCTGTTCATCTAAAGATAATGCATGCCTCCATTAAGTAACTAGTCTAATTAAGTCGAGCAAATTACTATGAAATGAAGAAAGCTCATTAACATAACTATAGTTTTTCCTGAAAATGCACAAGGGTTGGTTAAAAGCATGCTTTCAAAATTCTCGAGAAAAAATCCTAGAGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597454" ref_strand="+" ref_description="SGN-U597454 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|20146267|dbj|BAB89049.1| (e_value=3e-93) unknown; (*ATH) AT4G27020.1 (e_value=9e-93) | Symbol: None | expressed protein, gene F20P5.12 of BAC F20P5 from Arabidopsis thalianachromosome 1, PID:g2194125 | chr4:13568439-13571480 REVERSE | Aliases: F10M23.360, F10M23_360; ">
      <seq>gcttttacaacaacactgcttttttggatcttcacaacaaaggtgggagtcgatatggcggtggcactatccatattaaggtcaacaatgcacacagttattcttgtatggacctttacatctttgcgaccccatatcgcgtgacatgggattactacgctttatctcgtgaacatactgttcaaatcaaagaatgggagtctcaagctgagttagaatatgtgaagcgcaaaggagtctcaattttccttatgcaagcaggaacgttaggaacccttagagcactatgggatgttttccctttgttcacaaacactggatggggtgaaaactcaaatatcagatttctgaagaaacacatgggtgcttcttttgaccaacgtcctcaaccgtgggttagcaaccttaccgttgaagacatacattctggtgattttcttgcaatatcaaaaattagagggcgttggggtggttttgaaacattagaaaaatgggtatctggaacttatgctggccatagtgctatttgcttgagggatgctgaaggaaagctgtgggttggagaatctggacatgagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="97951" stop="93622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97651" g_stop="97572" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97571" i_stop="94518" i_length="3054">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94517" g_stop="94377" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="221" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94376" i_stop="94284" i_length="93">
            <donor d_prob="0.327" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94283" g_stop="93922" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="583" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U597454" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97651" e_stop="97572"/>
          <exon e_start="94517" e_stop="94377"/>
          <exon e_start="94283" e_stop="93922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTACAACAACACTGCTTTTTTGGATCTTCACAACAAAACTGGAAGTCGATATGGCGGTGGCACTATCCATATTAAGGTTTTTTTCCATAAAAATATTTATCTTTTTTTTTTCTTATTTGTAACTTTATATGTATGACTAGTTGGTGTTTTCCTTTTATTTTGATGTTTGAGTGTATCATTAGTAGAAGTTTTGGGTTTATGGTGGTTTTTTGTTTCATGTCTCTGTTGGTTGAAACTGGACTGCTGTTTTCGGATTCTTGTTTTAGGTTAGTCCAGAGCATAGATTATAGTTTCATTATTGTGATGAACTTGCTCTTATTCACAATATGAGCTATGTTGCTCGGACTTGGGGACAGGTGTCTGATACGGGTGTTATCTAGCTAAAAGTTGGATCAAAGTGATCTATATTTTAAATGGGGGATTTGGCTAAAAAAATATTTCTTTTATATGTGAAAATAGAGTTATATGTCTAAATTACGAGGTATTGTATGGATAACTTAGAAGGAATAATGGGGGAAAATTTATTGATCAAGAGGAGAATCCGAGAAGGTGATATAAGGAAAAGGACTTAGATAGAAACTTATATACAAGGTACTCCACTTTCTTCAATTTCACCTTAGTTTTGATTACTTAAATCATTGTATCTGTCTCAAATTTCTCCGTTGATTTTGGTCCAAGTAACCGAAATTAGTTGACCAAATCCAGTTTGGATTCCACACCCACACCCATGTCGTGTCAGCATGGGTGTGTATCAAAAGTGAAAATTCCGAGCAACTTAGGATGCAATTAGTATTTTTGGTTATCTACGAAGATCCTTGTTGTTTCTTTTTCTTCAAGTCTCTTTTTTCTGTTTGTTAGTCGTCTGTGAGAGAGAAACTAGGTGGAGGTTAAGCTTCTTTCATTGCTATGGACTTCTGAAAATTGGCTTTTATCTAGTTATTTGAAGATTTTGTATGGGTCAGAAAATTGCGATTGGAACTAACAAAAACATTTTGGGATGTGAAATGACCTTAGCCAAAAGACAGAAAGAGGTATAAAGCATTTTGGTATATTATCTGTACATTCTAATCTTAGCAACTGGAAATGGATCTTGAATCACTAAAGGAACTGATGGTGAGGGAAACAATTTATACCTTTTTTGGATTGGATCAAGGCATCAACTTGTTGGCTGATGACATTGTGCCAAAATGGTTGCCTCGTGATGGACGCAAGTTGAATCATGTTTGAGTAATACATCCAAGCTAAGCGCGCAAAACTTTTAAACTCAATAATATTCTTAAAAGATATTTATAACAAATTGAAAGTTAAGGAAATATATACATAGGAAAGATGATATCACAGTGAGTGTAGGTGCTCGCCATCGTCATTTTCCGTTTTTGTTGTTAGTTTGTCTTTCTATCCTCATCTCCTATATTCTTGCTGGTTGAGTATAAAAGGGCTTTATTACTGCTCATGGCTGTAAAAAATGGCTTCAACTTGGTCACTTAGCGTGGTTTCTTGAAGTTGCACTATTTTAGAGGTATTGGATGTTTAATTAGTCATATATCCCTACTTGTGAGTTTATGATTGCTGTTGATATGATAAATCGTGACATGTGGTTGGTGATGTGTTATTGTCAAGTGTTGTATGCAAGGAATTTAGAATGGTGGTCTCTGGTGCTAGTCGTGTCTTTCATGTCTTGAACTAGGCTGATTAGGACGGTTTGCCTGATAATGACGGTGTGTCAAAGATTGATTTGATGCATGTTTTAGCTCTGAACTAGGTTCAAAATAGGCTGAGTGGTTCACCTTGCTTAGGCAGCACTTTAGCCACTAAGCTGCTAAGACATGTGTTCCTCACCCTTGGATTGTGTATTAATGAAGAAACCACTTAAAATAGTTATTTGGCTAGTTATAATCTTTTTAAAAGCTTTTATCTTAATAATTGCTGTCTGTATTTATAGTTATTTATAGCTGATTATATTTGTAGTTATTATTTTTTTGTTGCATATATTTTTAATTGTTCTCTTCATTTGAGTCTATCTTTGTTAAATCTTGTGTTTTATATGTGCTTTGCGCTTAAAGCTCCAACAGATTTCAATGTTTCTTTTGTTTGTTTTTTTTTAAAAACTTTTCACGTTTGATATCACTTCAACCTCCCGTCCTTCTTGTTAGGTTGGGTTCTTTTCCATTGAACAATTTCTCTCTCTTTGTTGGGCTGCATTGGGCCTTGTAACAATAAATGTCCCAGTCTCCCATGAGATAAAATGAGTTGTGGTTAAGGAAGTTATTGCTTGAATTCCGAATCTTCCCCTTCAGATGCTAAACGACTCTTTTACTGTAGTGGCTAATGAGCTTGGCAAATGTATCTGTTGTGGCACTCTTTTCAGTTGCGTGATCTTTAAATCTATAAATGCTGCAGTAAATTAGTTCCCAATTTTTTTAAAGACGCTGGTATGGCACTTCTCCATAGATCAGTACTCTCAAGTCTTAACTCTTAAGCTTCTTATTCTTAGGTTGCCTCTTCTCTGTAGATTCTATTGGTGAATTGAGTTTTTTAGGTTGTATTCATAAAATGCTTTATTCTCGTTTTGAATCTCTTTACACCTTTGATGAGAAATCACAGGTTTTATTTTACCATTTGGTATATTTGATGCTCTTTTTATAGATTGCTTCTTGACTTACTAATTATGGAAATATATTGACCAATATACATCTTTTTGATGAAGTTAACAAAGTATACATAGAGTTACATTTTATATATTTCTTTTTTCTTATGAATGCATTCCCAAGAGAATGGCACCTTTTTATATTTGGAAGCCAATAAATTTTGAACTTCCCATTTTACCCTTAATGGCTTGCTCTTTACAGTGTCATGGCATGTTTAAGACCACAAGTTTTAAGGGTGCTTTTTTTATGTGCCAAAAGTCTTTCTTTTTGTCTTAAGCTCTGTGAACAATCTAACAGTTCCATACAAAATAAAATTGAGGGAGTGACTTATTAATTTAACGGCTAAAATAATGTACTTGTTAATTAATAAATGTCCATGGTCCCAAAGTTTTTATTAGTACATCAACATATAATTGAATTTATACCTCTGGGACTGCTGTATCTTTTAAATAATTAATAGAGTATTTTTTATTGTTATTCAGGTCAACAATGCACACAGTTATTCTTGTATGGACCTTTACATCTTTGCGACCCCATATCGCGTGACATGGGATTACTACGCTTTATCTCGTGAACATACTGTTCAAATCAAAGAATGGGAGTCTCAAGCTGAGTTAGAATATGTGAGTTGCAATTATTTCATAACCGGTACTTCATGGACATTAATATAAGCATCAGTTATGATAGGAGTAATGGACTCTAAAATACAAATGCAGGTGAAGCGCAAAGGAGTCTCAATTTTCCTTATGCAAGCAGGAACGTTAGGAACCCTTAGAGCACTATGGGATGTTTTCCCTTTGTTCACAAACACTGGATGGGGTGAAAACTCAAATATCAGATTTCTGAAGAAACACATGGGTGCTTCTTTTGACCAACGTCCTCAACCGTGGGTTAGCAACCTTACCGTTGAAGACATACATTCTGGTGATTTTCTTGCAATATCAAAAATTAGAGGGCGTTGGGGTGGTTTTGAAACATTAGAAAAATGGGTATCTGGAACTTATGCTGGCCATAGTGCTATTTGCTTGAGGGATGCTGAAGGAAAGCTGTGGGTTGGAGAATCTGGACATGAGAATGA</genome_strand>
        <mrna_strand>GCTTTTACAACAACACTGCTTTTTTGGATCTTCACAACAAAGGTGGGAGTCGATATGGCGGTGGCACTATCCATATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACAATGCACACAGTTATTCTTGTATGGACCTTTACATCTTTGCGACCCCATATCGCGTGACATGGGATTACTACGCTTTATCTCGTGAACATACTGTTCAAATCAAAGAATGGGAGTCTCAAGCTGAGTTAGAATAT.............................................................................................GTGAAGCGCAAAGGAGTCTCAATTTTCCTTATGCAAGCAGGAACGTTAGGAACCCTTAGAGCACTATGGGATGTTTTCCCTTTGTTCACAAACACTGGATGGGGTGAAAACTCAAATATCAGATTTCTGAAGAAACACATGGGTGCTTCTTTTGACCAACGTCCTCAACCGTGGGTTAGCAACCTTACCGTTGAAGACATACATTCTGGTGATTTTCTTGCAATATCAAAAATTAGAGGGCGTTGGGGTGGTTTTGAAACATTAGAAAAATGGGTATCTGGAACTTATGCTGGCCATAGTGCTATTTGCTTGAGGGATGCTGAAGGAAAGCTGTGGGTTGGAGAATCTGGACATGAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U567403" ref_strand="+" ref_description="SGN-U567403 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157337943|emb|CAO38987.1| (e_value=1e-108) unnamed; (*ATH) AT5G54860.1 (e_value=1e-106)  Symbol: None | integral membrane transporter family protein, contains 10 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter; similar to high affinity folic acid/methotrexate transporte... ; ">
      <seq>ttttcctccttttctctgttttacctgctttacagctcttttcgtgtggtttggttgaggagggttctgtacaaggtaaagcattacccgaaggttctgcattaaatggttctgatatgacgagtggaattgttgatgaagaaaataaattctctggtgaaaaatcaaaagttagtactttgaggagaaagaagagccagaataatacaaaaagagtgccaacaacggaaagtaaatttcaggctcctgacaaaaagggatcatcattgtctccgtggtatcaatcactgaaaatggccacttccacattatttagggcgttccgccagccagccattttgagaccaatggcttggttctttttggctcatgtgacagttccaaatctctcgacggttatgttctattatcagacagagttcttaaaactggaggcatctttccttggaacagcacgtgttcttggatggttgagtctcatgatcgggaccttgacttacaatcgctatttaaaaaggatgaggttgcggcatattctcatgtttactcaagtttgcttggccattctgaccattctagatatggttttggtttctcgagctaatgtttcattaggtatctcagacaaggttacagtgctatttggttctgccctttctgatggcatcaatcaattcaagttcatgccctttcttatcttatcggggcagctttgtcctccaggggttgaaggaactttatttgcattgttcatgtcaataaacaacttaggttctacggtgggatcctttgtaggagcagggttggcttcagttctaaacatctcctcaggatcttttgacaatctcttcttaggcattggtatacaggttctctgcactttcatcccagtggccttccttttcttgattccaaaggaagctacaggaatatcagcatagttcacagatcatacatgcagcttacagattagacaacaaaggtgtttttttcctttatgatagacagatactctttttttggatttagatgagcttaaatagagcaacacagtcgatgaaaattcatttagtcgaccttaacttgcttgagattgaggcgtagtagttgaatggatacttgtagcaatcctaacctctgcttactaacatctgtaatagtaaacatccagaagttttatctgatatcattgttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="101179" stop="98588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100879" g_stop="100537" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100536" i_stop="99951" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.034" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99950" g_stop="99753" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="541" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99752" i_stop="99662" i_length="91">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99661" g_stop="99524" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="679" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99523" i_stop="99405" i_length="119">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99404" g_stop="98887" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="1197" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U567403" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100879" e_stop="100537"/>
          <exon e_start="99950" e_stop="99753"/>
          <exon e_start="99661" e_stop="99524"/>
          <exon e_start="99404" e_stop="98887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCCTTTTCTCTGTTTTACCTGCTTTACAGCTCTTTTCGTGTGGTTTGGTTGAGGAGGGTTCTGTACAAGGTAAAGCATTACCCGAAGGTTCTGCATTAAATGGTTCTGATATGACGAGTGGAATTGTTGATGAAGAAAATAAATTCTCTGGTGAAAAATCAAAAGTTAGTACTTTGAGGAGAAAGAAGAGCCAGAATAATACAAAAAGAGTGCCAACAACGGAAAGTAAATTTCAGGCTCCTGACAAAAAGGGATCATCATTGTCTCCGTGGTATCAATCACTGAAAATGGCCACTTCCACATTATTTAGGGCGTTCCGCCAGCCAGCCATTTTGAGGTAACTTGTAAAGAAGTTTTAAATTACTTTTTGTGTTGATGTTTTTAAATGAATAATCACAAATCAATTTATTATTCTTTTGGAGTTTTCTGTTAGAACGCTACCAGGTTCCAGCTTCAGTATATTATTATGACATGATAGGACCTAGGTCTTGAAAGTCTTCCTGAACCTTCTTTTTAACCTTTGGCGATGCCATTTTTTTCTATTTGTGTACCTTGGTCCTTGTTTGAAGGGGTAACAGGACCACGAAGAGACAGCTTTCATTGGCATAAAATGGACTTGCATCACCATAATTGAAATAATGAAACTGTGATTCTAAGAACATTTTCATCAGTATTGGCCATGTATCACAATTTCTTAAGAAAGATCAAAGTGTCAGCGTTACTTTCAATAGATTAAATTACAGGCCAAGTTGTCACTTTTGTGGCTCTTCCATTTGATGAGTTCATGCTTCCTTGTTTCACACCTCTTGGGAGGTTGTGAATTGTTCAGTAGTCTCCCATCTTGTTTCTTTTGCCTTTTCTTAATGAACTGATGACTGATGTGTCGGTGGTTGTTCTCTTGCAAATTTTTCCTTGGAGTCCAGACCAATGGCTTGGTTCTTTTTGGCTCATGTGACAGTTCCAAATCTCTCGACGGTTATGTTCTATTATCAGACAGAGTTCTTAAAACTGGAGGCATCTTTCCTTGGAACAGCACGTGTTCTTGGATGGTTGAGTCTCATGATCGGGACCTTGACTTACAATCGCTATTTAAAAAGGATGAGGTTGCGGCATATTCTCATGTAAGTAGATCTTTGACTTGCGAATGTGATGTGATGAAGGAATATGACTTAGATTACCAAATACTTATATTCCTCTTTATGATTCCTGCAGGTTTACTCAAGTTTGCTTGGCCATTCTGACCATTCTAGATATGGTTTTGGTTTCTCGAGCTAATGTTTCATTAGGTATCTCAGACAAGGTTACAGTGCTATTTGGTTCTGCCCTTTCTGATGGCATCAATCAATTCAAGTATGCCCCATATTTTCTTATATAAGGTCTTCTTAGAAGTAGTTATAGACTCTGCAACAGCTAGCATCTATTCCATTTAAGTATGAAACAAGTATTTGAAGTATTTCTTCGTTTTGTAGGTTCATGCCCTTTCTTATCTTATCGGGGCAGCTTTGTCCTCCAGGGGTTGAAGGAACTTTATTTGCATTGTTCATGTCAATAAACAACTTAGGTTCTACGGTGGGATCCTTTGTAGGAGCAGGGTTGGCTTCAGTTCTAAACATCTCCTCAGGATCTTTTGACAATCTCTTCTTAGGCATTGGTATACAGGTTCTCTGCACTTTCATCCCAGTGGCCTTCCTTTTCTTGATTCCAAAGGAAGCTACAGGAATATCAGCATAGTTCACAGATCATACATGCAGCTTACAGATTAGACAACAAAGGTGTTTTTTTCCTTTATGATAGACAGATACTCTTTTTTTGGATTTAGATGAGCTTAAATAGAGCAACACAGTCGATGAAAATTCATTTAGTCGACCTTAACTTGCTTGAGATTGAGGCGTAGTAGTTGAATGGATACTTGTAGCAATCCTAACCTCTGCTTACTAACATCTGTAATAGTAAACATCCAGAAGTTTTATCTGATATCATTGTTCAT</genome_strand>
        <mrna_strand>TTTTCCTCCTTTTCTCTGTTTTACCTGCTTTACAGCTCTTTTCGTGTGGTTTGGTTGAGGAGGGTTCTGTACAAGGTAAAGCATTACCCGAAGGTTCTGCATTAAATGGTTCTGATATGACGAGTGGAATTGTTGATGAAGAAAATAAATTCTCTGGTGAAAAATCAAAAGTTAGTACTTTGAGGAGAAAGAAGAGCCAGAATAATACAAAAAGAGTGCCAACAACGGAAAGTAAATTTCAGGCTCCTGACAAAAAGGGATCATCATTGTCTCCGTGGTATCAATCACTGAAAATGGCCACTTCCACATTATTTAGGGCGTTCCGCCAGCCAGCCATTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAATGGCTTGGTTCTTTTTGGCTCATGTGACAGTTCCAAATCTCTCGACGGTTATGTTCTATTATCAGACAGAGTTCTTAAAACTGGAGGCATCTTTCCTTGGAACAGCACGTGTTCTTGGATGGTTGAGTCTCATGATCGGGACCTTGACTTACAATCGCTATTTAAAAAGGATGAGGTTGCGGCATATTCTCAT...........................................................................................GTTTACTCAAGTTTGCTTGGCCATTCTGACCATTCTAGATATGGTTTTGGTTTCTCGAGCTAATGTTTCATTAGGTATCTCAGACAAGGTTACAGTGCTATTTGGTTCTGCCCTTTCTGATGGCATCAATCAATTCAA.......................................................................................................................GTTCATGCCCTTTCTTATCTTATCGGGGCAGCTTTGTCCTCCAGGGGTTGAAGGAACTTTATTTGCATTGTTCATGTCAATAAACAACTTAGGTTCTACGGTGGGATCCTTTGTAGGAGCAGGGTTGGCTTCAGTTCTAAACATCTCCTCAGGATCTTTTGACAATCTCTTCTTAGGCATTGGTATACAGGTTCTCTGCACTTTCATCCCAGTGGCCTTCCTTTTCTTGATTCCAAAGGAAGCTACAGGAATATCAGCATAGTTCACAGATCATACATGCAGCTTACAGATTAGACAACAAAGGTGTTTTTTTCCTTTATGATAGACAGATACTCTTTTTTTGGATTTAGATGAGCTTAAATAGAGCAACACAGTCGATGAAAATTCATTTAGTCGACCTTAACTTGCTTGAGATTGAGGCGTAGTAGTTGAATGGATACTTGTAGCAATCCTAACCTCTGCTTACTAACATCTGTAATAGTAAACATCCAGAAGTTTTATCTGATATCATTGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564863" ref_strand="+" ref_description="SGN-U564863 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157337943|emb|CAO38987.1| (e_value=1e-67) unnamed; (*ATH) AT5G54860.1 (e_value=2e-68)  Symbol: None | integral membrane transporter family protein, contains 10 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter; similar to high affinity folic acid/methotrexate transporte... ; ">
      <seq>ggtccactgtggacttaacaacggcaaagaatatgaaaatggagaaaaataatggcaaagaggagtaatgaatacgtcaatgcagctgcggcaacaagtttatagataggtttgaataaaggatccatgtaatctgagggcatcccaatttccagtcttctgtataccacataaaggaacgactggagaaaacaacaatcaattttttttttatttttttttactgaatcaatcgattccaaaatgatcggttggtttaagcagttacatactgcttttgggttttcctttctatggcttgtttgcctcatttacttcacacaggggttcagatcttttgtctggactgcagtttcatatcagttgaaagacaacttgaagctatcaccatcagcctcccaatttgtcacttcaatagcattctttccatggagcataaaacctttatatgggatattatctgattgctttccaattagaggaaggaaaagagtcccctaccttatgctggcaactttgctttcgctgttgccatggctcattttagggttaagtgatttcctgagaaatacgaggacagaactcatgattcttttgacactgcagaacctgggttctgcaatggctgatgttgtaattgacgcaatgatcgctgaggcagtaagatttgagagggcatcatttgctggtgatcttcagtcagtatcttggctgtctatggcattcggaggaatctgtggtagtttgctgggangatatgcattananaatatacggatagatatgattttcctccttttcnctgttttacctgntttacagctctttcntgng</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="106152" stop="100532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105852" g_stop="105531" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105530" i_stop="103286" i_length="2245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103285" g_stop="103158" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="452" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103157" i_stop="101677" i_length="1481">
            <donor d_prob="0.891" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101676" g_stop="101455" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="674" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101454" i_stop="100993" i_length="462">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100992" g_stop="100832" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="834" r_length="160" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U564863" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105852" e_stop="105531"/>
          <exon e_start="103285" e_stop="103158"/>
          <exon e_start="101676" e_stop="101455"/>
          <exon e_start="100992" e_stop="100832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCACTGTGGACTTAACAACGGCAAAGAATATGAAAATGGAGAAGAATAATGGCAAAGAGGAGTAATGAATACGTCAATGCAGCTGCGGCAACAAGTTTATAGATAGGTTTGAATAAAGGATCCATGTAATCTGAGGGCATCCCAATTTCCAGTCTTCTGTATACCACATAAAGGAACGACTGGAGAAAACAACAATCAA--TTTTTTTTATTTTTTTTTACTGAATCAATCGATTCCAAAATGATCGGTTGGTTTAAGCAGTTACATACTGCTTTTGGGTTTTCCTTTCTATGGCTTGTTTGCCTCATTTACTTCACACAGGTTCGCCCTCCATTTCCCATCTTTTTCTTTAATTCAATTTATATATACTGTTTCTCAATTCAGCATTTGGGGTTGAGTGGGTGTTTCTTTTTATGTTGTGAATGATGTAGTTTCTGGGTTTTTAGATTAATCTGACTTTTTTACTTTCAAATATTGTTCCAAGTGAAAAATTCTAGATTTTGTTGAGTGGGGTGTTCTGGGAAGTTCTTATTTCCATCAGGTTCTGAAATGAAAATGAATATTGAGGATTCATATAGCTAAAGCAACTAGTTTGGAATTGATGTATAGTCGTTGTTTTATAAGGTTCCATGCTTATCTTTAACATCTAGATTAGTTCTTTTTGTGGCTTGTGAATGTCCCCACTACAAGAACCTTGCAAAGGGTTTAAAAACTTTTCCTGCCTCTGAAATCAATAGTAATCATTAGGGTGCCAATTAAACTTTAGTTTCGCTTATCACTTCAAACATATCAATGACTGTTATGATTTGATGTCTTTCTCAAATTAAGTCAACAAGCAGCTGACTCATTTTGTGTCCCTTCCAGAGCATCATTTTCTGGAGAATTTAGGTGTGAATGACATCATTTTTCAAAAAAACTTTGTGTGTTCTAGTAGTTAGACCTAAAACCAAGACTTCATCTCGTCTTAGGTGTAAATACATACGTAATTTTTTTGTGAGACAGTTGGATAGTGATTGTTGAATCACAAGATCATAGTTTAATTGATCCAAGCAGTGCAATGCGAAGCCATAAGGTCTTTGGGTCAAGGGTAACTCGAGAGTACTTTTTTTTTTTTGAGAATGAAAATTACATACTCCAGTCCCATATTGAAAGCACTGAATTTAGTAGATTTAGTAGAATAGTTTAGAGGGTTGAAATGAGGAAAGTTTAACAAAGCTTGTTTGAGCTCACAAGATCATAGATAATTGAACCTAGCAGCACGATATGGAACCACAAGGAGGTCTTCGGGTCAAGCATGTCAAATTTTTTGTTCTCAAAAGTTGGGGAAATTACAGTTAGTTATAACTGAAAAAACTAGCAATTGTGGTGTCTGTTCAGCAAATATCTAAAGCGTTATGCTTTTTCTTCCGTAGGTGGAGTGGTGGAGTGGAGAGGAATAGAATTCCTCAATGTGCTCTTTAAGTACTGTGACTTCAATAAATTAAAACATGAAATTTAACCCGTTTTGAAGACAAAGAAGAACTCCTCTATAGGTCTGATAAAATATTGTTAAGGACCAGAATCCAGATGTGGAACAACCACTGCAAGATGCTAATACCGTTATCTAGAAAACCAATATATTGGACTCAATATGCTGGTGCCCACAGGCAAAATTATTTCACCTTGTTGCCTCTTTTATTTGCTTGGACGAAGTCTCTTTTTTTGACATCAGTACTTCAAATTTATTGAATGAAGTCTTGCAGCCGAGCATGGACAAAATTATGCATAATGAACCAACATGATTGTTGTCATATCTAGCAAATATAAGTTTTGCTGTAATAGCAGTTAACTTGACTGTTTATCTCAATGAGATATCTTAGGGATCATTTGATTGGATACATTGCTAAATAATCTCTACATAAAATCCTGCATCGTATTATAGGTTCAGTTGACTGTATAAGAAAAATAAATATCAATGTTTGTTGGCCACATAAGTAATGCATCACTTGGTTGGCAGTGTTAAGCTTAATATGACATAGCTTATGTAGGGATCTTAATTTATTTTCTATGTGGGATATAATGTGTAAATAAGAATATGTATAATAGCAATTTGTGCACAAAAGTATTGAAAGTTAAAAATGCTCTTAAAGTAGGTAATTCCTACATACCATTCTCTGTATTATTATTCATTGCATGGCAATACCTACATTATTATTTACTGCATAAACATTCCTTGCATTACAAGTACTATGTAACTAGTACTTGAACCAAATGAACCCTTAAGGTTTTCTCGCACTCGTCTTCTATGTGACGTCTCAAACTCTGATATAGTATTTTGGCAGCCTTTTTTATGTTAAGAGAGTGGGCGTGTAGTGTTCCTCTGCTGTTTCCTTGATTTAAACAGCTTCCAGAGGGGTAGGGAAGTGAAAATGAAAAAAGAAAAGAAAAAAGAAAATCGAGTGGTTGTAACCTCTCGGTTCTCCATACACTTACAAAATGCATTAAGAGATGATAAAATATTTTACATTAGAATCTTATTATTTCCTCATTGAGTATAATTAATACCATTCTTAATTTGTGGAAGCAGGGGTTCAGATCTTTTGTCTGGACTGCAGTTTCATATCAGTTGAAAGACAACTTGAAGCTATCACCATCAGCCTCCCAATTTGTCACTTCAATAGCATTCTTTCCGTGGAGCATAAAACCTTTATATGGGTATTTATCTATCTCTAATACTCAGCCTCTTGTAACCTTCTTTAGTGCATATTTGTGAATGATTTTTCAGTATTGTCTAAACAAATATCTTTGAAACAATTCATAAGCATAGAACTAAAAACAAATTAAGCCAAACGAACTTCCAGACTAAATTGGGATGAGCTCAATCTGATTTGGTAGATCGGCATCATGAATGATTCGGTAGATCGTGATGCTTGCATTGAGTGAATATTAGAATTTGATGTTAGTCTTTGAGCTTTAGAAGCATAGACTTGAGGACTTCTTGGCTTTGATAAGGACTATGTGGTCCAACCACTACCCTGTCAAGTTCATCTTTTCAAATGATTACCTATCATCTCTGTGGTTGTATCATACTGGTAATAGCCAGCCCACTTCGAACTGAAATTATATTTTGTCCTTTTCCATTTTCACTCTTTTCCCTTGGGGGCATCTTTGCTTTCTTTTTGTAAGTTATTACTGTTTCAGTAATAATTTTATTTGACTTACAAGAAGCTATTATTGTATCATGCAGTCCCTAGCTAATTTAATTATGAGAGTACACAATACCACTTTAACCTAGCCAACTACCAATAAAATGGATTTTCACTGAGAAACAACATCTTGTCCTCATCGTTGTTCCTTTCTATTACATGTTTTTATAAATATTCTATGGTCTAAGGGAAGTTCATTCCAGTTTGATTATCTGATTGTATCTATGATGATTTTCTTTTCTTTTCATGTATGATGTAATTATACCAAATCTGAGGAATTGGGGGGATTTTATTTTTCTGTCTTCTCATCTTTCAGTTTCTATGTGTATGGGATGAACATCTCTTCGTTAGGTTTTCCAACCGCCTAGCAGGCTTAACTTTTATGTAATGTTAAGTAAAGTTTAGCTTGAGCTGAGTATCAGATTCTACTGAGAATTTAATGATCCTATAGATTTGGTCAATTTATCTAAAACATTCATGTGTCAGGTTTGAGGTTACATATCAAAAGGAAAAAGTTGTTCTGATGTTTGGTTTCCTTCCATCTGATTAGCAGTACTGCAAACAACAAAAGGAGCTGCAGATCAATGTGAAATGAATATTAAGAATAATGTTCTTTGCTAGGTGGCATCTAGATATGTTGTGGATTTCCATATAAAGAGAAGAGTTGTGAGAGAAAACTTCCAATAGTTGCTTGGAGTTATAATAAACATCAGGAGGTCAATTTTTGCCATATAGTAGAATCTTATATTCTTATTGTAGAAGACCTAAGAATATGGCGTAAACCAGGTAAAATTTTCTTAAATCATGGAAATTGTCATTAAACAACTTTTATTATAAGATGTTAAAATGGTCTGTAACTGCTGATGTGCTGTTCATGACTTATACTCTGCTAAGATCATTTTTGTTGTTTTCTCATGAAAACTTGTTGGAAAAATAGTTCATTTTTTGCTTTTCTGTTCCATCAACCATATTTAAATGTGCTCTTTGCAGGATATTATCTGATTGCTTTCCAATTAGAGGAAGGAAAAGAGTCCCCTACCTTATGCTGGCAACTTTGCTTTCGCTGTTGCCATGGCTCATTTTAGGGTTAAGTGATTTCCTGAGAAATACGAGGACAGAACTCATGATTCTTTTGACACTGCAGAACCTGGGTTCTGCAATGGCTGATGTTGTAATTGACGCAATGATCGCTGAGGCAGTAAGATTTGAGAGGTATATTCTTCTGTATGGGACTCTTTCTGTCATTTAAAGAAACGTTCCCAGTCTGGTAATTTTATGTAGCTATAGAAACAAACACATAGTTTTAAAAATGTATTTGGACCAAAATTAAACCTTCGACAACACGACAATACAACACAACAAAAGTAAACGTCAAAGTAGTTGGATCACTAGAGGTTGTACCATGGGTAAACTTGTCTATTCAGTTCATGATTAGATGTAATTATATACAAAAGCTTGCTTTCATTTGAAAATTTTGATGATGGAATGCCCGGGTTTGTGTGTATTTGATTGTCAATCGTCACTTAATTGTGAGTTTCATTTTACATGCAAATCGACAGGTTTAGAGACTGACATGTACAAAGTGTGCCAAAAAGATTTAGATTAGTTTCGTTGTGCGTGAAAGGCATGACCTTTTTTTTTTTTAAATTAAAATTTAGCTTTACTTGTCAACAGGGCATCATTTGCTGGTGATCTTCAGTCAGTATCTTGGCTGTCTATGGCATTCGGAGGAATCTGTGGTAGTTTGCTGGGAGGATATGCATTAGACAATATACGGATAGATATGATTTTCCTCCTTTTCTCTGTTTTACCTGCTTTACAGCTCTTTTCGTGTG</genome_strand>
        <mrna_strand>GGTCCACTGTGGACTTAACAACGGCAAAGAATATGAAAATGGAGAAAAATAATGGCAAAGAGGAGTAATGAATACGTCAATGCAGCTGCGGCAACAAGTTTATAGATAGGTTTGAATAAAGGATCCATGTAATCTGAGGGCATCCCAATTTCCAGTCTTCTGTATACCACATAAAGGAACGACTGGAGAAAACAACAATCAATTTTTTTTTTATTTTTTTTTACTGAATCAATCGATTCCAAAATGATCGGTTGGTTTAAGCAGTTACATACTGCTTTTGGGTTTTCCTTTCTATGGCTTGTTTGCCTCATTTACTTCACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCAGATCTTTTGTCTGGACTGCAGTTTCATATCAGTTGAAAGACAACTTGAAGCTATCACCATCAGCCTCCCAATTTGTCACTTCAATAGCATTCTTTCCATGGAGCATAAAACCTTTATATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTATCTGATTGCTTTCCAATTAGAGGAAGGAAAAGAGTCCCCTACCTTATGCTGGCAACTTTGCTTTCGCTGTTGCCATGGCTCATTTTAGGGTTAAGTGATTTCCTGAGAAATACGAGGACAGAACTCATGATTCTTTTGACACTGCAGAACCTGGGTTCTGCAATGGCTGATGTTGTAATTGACGCAATGATCGCTGAGGCAGTAAGATTTGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCATTTGCTGGTGATCTTCAGTCAGTATCTTGGCTGTCTATGGCATTCGGAGGAATCTGTGGTAGTTTGCTGGGANGATATGCATTANANAATATACGGATAGATATGATTTTCCTCCTTTTCNCTGTTTTACCTGNTTTACAGCTC-TTTCNTGNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U569069" ref_strand="+" ref_description="SGN-U569069 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157337944|emb|CAO38988.1| (e_value=4e-59) unnamed; (*ATH) AT5G54855.1 (e_value=2e-53) | Symbol: None | pollen Ole e 1 allergen and extensin family protein, contains Pfam domain, PF01190: Pollen proteins Ole e I family | chr5:22300026-22301613 FORWARD | Aliases: None; ">
      <seq>ggggcctgaatccagtgaggcaggcaacaatggagtcaagttggtgtaaggtattactttacctaactctaattaccaatttgaccctacaaggtgtaagaggttggactggagagattcatggaagagttgtttgtgatgtttgtgctgattcctctgttggtccggaagaccatgttctacaaggtgcagaggttgcagttctttgcattacgaagactggggaagttctgaattatcaggcattcacagactccaaggggatatatagagtggctgagacaatgccagcgagtgatcgttgggatgcatgcctagcaagacctatcagcagcttccacgagcactgtacacgtctgggagatagcaactccggggtgaagttcagctacaatcatccttcaggatattcacacacagtcagaccatttgtatatcgtcccaccaacgttccaacttactgcatctaataaatatatataatgtatcatatggtacaagctatgtaagaaagcttgtttctgttattgtatgtatccttggttgccttgattttattgaaaatccagtagcaatctggatatatctggtaacacttgtctgttcaatttactcagataaattgatgatttgattagtgtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="110149" stop="105954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109851" g_stop="109666" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109665" i_stop="106715" i_length="2951">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106714" g_stop="106255" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="646" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U569069" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109851" e_stop="109666"/>
          <exon e_start="106714" e_stop="106255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCCAGAATCCAGTGAGGCAAGCAACAATGGAGTCAAGTTGGTGTAAGGTATTACTTTACCTAACTCTAATTACCAATTTGACCCTACAAGGTGTAAGAGGTTGGACTGGAGAGATTCATGGAAGAGTTGTTTGTGATGTTTGTGCTGATTCCTCTGTTGGTCCGGAAGACCATGTTCTACAAGGTTCCTTCTTTACTCTTAATAATACTGCTACAATCTTGAGAAAAATGAAGTAGTTTTTGTTTTTGTAAGTGAAAAATGGTTTTTGGGATTTGGGTTGTGCTTTACCATGAATATAAATTTGAGTGAACAACTTTTTCGAATTTCAGAATTTTTTGAAATTTTATGCCTAAACATGAATTCAATCCTGAAAAATTTAAAAATGTTCATGGACAAATTAGCCACTAAATGAGTTGGGTATACAACCTATGGTTCGAATCCGTTGTTATATGTTTGCTATTAGCTTTTGTTGTTATTGATGTAAGTTGAGAGATTTACTAATTTTATTGATTGTCAGAAAAATCGGGGTAGGAGAATTGGGAGGGGTACAAGGGGGGAATTAAATCTCTCGTTAGCGAGTTTTGAAGTTCAGATTGTCAACCAATTGAGCTACTAAGATTCCCCAAATTGTAGTGTTTTCAGAATCATGTTAGGCATTTGTTTTTTGCTTTGATTAAATGATTGTTATATTTTATGCTGGATGCTTGCTGATAGTTTCAGAAAAGTTGGCCTGCTTTAAGAATTTGTGTTTTCAAAGCCAAATATACGGGTGTTTGTACCCTATGGATCACTAAAGTTTCAAACTTTCAACTTTGTTATCAGTCCTAGGCCGTTTTGGATAACTACACTCGTTTGGCTCCTAACAGATTCTATCCTTCTATGTCATCCAGAAAGGAAGTAAACTTATTTCTTCATTTCTATTTAGTTACTCTTTTCATTTTCTAAGTTGGTTGGTTAAAAGGAGATGAATACTTCTATTTTGCATTGAAACCAAAGCATTATGTTCATGAACCTAGTTACAAGTTACAAGTAAGCTAAAGCATTGGATGTCCTAATCACTAAGTTCTTATTACTCCTTCCATCCCAAATTACTTGTCATTTTTTGCTTCTCGAGATTCAAACTACATGAACTGACCCATATATTTAGATGTATTTTTTCACCGTATTGATATATAAGAAGAATAGCAACTTATAGTACTGCCTTTATAGTTTTCAGATAGTAATTTTAAAATATTGAGTTTATCTAAACCAATATAGCTCCGAAGATTAGTCAAATTGACTCTTGAGAAGCGAAGTGGCAAGTGTTTTGGGATAGAGAGATGAGTGAGTCACTGATTGACAATAAATGCAACAAAAAATCACAAGAAGTTTCATTGGACTTCTAGTAAATGGTGCGTCAATTATAGAAATCAATTTACTTTGGGTAATCTTATGGTGACATTGTTAAGAATATTTCAAAACATGTTTTTTGCTAACCAATAAGATTTGAACCCTGATGGACTATTTGTTTTATTTGATATTCGATACTAGTGAAGTAAAACGGATTTGTTAAATAATGAAGAGGACTAAATAATGCCCTCTGTTTCCTCTCCTTCCATGTACCTGTCAGTACACACTTGCATAGATATATAGGCTGGGCAACTCTCTATACTTTGTGTGCTCCAGGGAAAGAAGTTATTATATACCAATATTGACACCATGTATTTATCTCCTTTTTTATGGAACTGTATAGATTAGAATCTCTCCCGTTACAAAGTTCTGTTGAATCTGTAAAAGCAAAAGTTAAAGCTGATGGGCTTGGAAGCACAAGGAAATTCTTGGGATGTGTATTCAAGTAGTGACACAGTTGCACTAGTGGAACACCATTGTACATCACCCTTAATCTCATCCGTGAGAATAGAAAATTAAGACAATCTTACTGCACCAGTAAACTAAGTTGTGCAGACTCTTTACTTTCTGTGCCGCACTCGTGTTGGATTCTCCAAAAATACACTACTTTTGGAGAATCCGACACACACCTGTTGACACTTTTGGAGAGTTCGAGCAACATAGTCACTAGATGCCTACTGTTACAGTAATTCTCTACTTCAGTCTTCCTGCTACCTTCTATCCTTCTGTTTGATTATCCTGCCATGCTTAGTTTATCCTTACATTTCCTTGATTATAGACTTTGCTACTTCATATGCTTTTGTTGTTTGGTATTTGTCAATGATATTGGGGCTTATGGAAAATGGGTGCCAATATAGTGTCATAGAAAGCCAGGCACTTGATTTATGACTCATTCATATTAGGCTTCACTTATTAGCCAACTCCAAAAGTCTATCGAGAATTTCCACGTTGAATTCTCCTAATTTATCAAAAAGTAAAAGCAATCTCAACAAAAGGGCATGACTGGATTATTTGAGTGTCAATATTACTCATGGGTACCATGATAGTTTGGTTGTTCCACTAATGATGTCATGATGGTGAGAAGGGTAACACGCCCAATGTCTATCACCATTTTAGCTCCTCCTTTTTTCCTAACCACCTATAGCTAGATGAAATACCATGTTGAACAGTTGCTTGGTGTTCTTCTTTTAGGCAATGTTAATCTGATTGGTAGGTCCTAGTTTCTCTATCCTTCTTCCCCACTTCTGGTTCCAGCCATTTCATTTCATGGCAAATTTTACTTTTCACCCCATTCTTGTTGTCTAGAATATGCTCTGGCTTGTACTCTAGCACATTTTAAGGTCAAATTAACGACCATTCAAAATTTAAGGCTGCGATAAAAAATCTCTTTATTGGATTCTTATGGGATAAAACACAAGCATTAGGTACTCATGTGCATAATTTTTACTTTCAAATGTTTTAATGTCATCTCATAATAATAGATGTTACATTGTGCCTCTATGGTATAATTTGTCTCTCTGGACATCTTTTGGTATCAAAACTTTAGGCAAATAAGGCATAGAATAAAGTGTTCCTACTCTTTTTGGTTTGTCAACTACGTTTCTGCTGATGATTGTGATTGTGTGTCCTGTTTATGCTGCTTCAACACGCAATGCAAGACTATCCTATCCACGGATACATGTATAATAATAACAATTCACTTCTCATTGTATCTGAAGGCGGTTTATCTTATTTCCTTGTTGCAGGTGCAGAGGTTGCAGTTCTTTGCATTACGAAGACTGGGGAAGTTCTGAATTATCAGGCATTCACAGACTCCAAGGGGATATATAGAGTGGCTGAGACAATGCCAGCGAGTGATCGTTGGGATGCATGCCTAGCAAGACCTATCAGCAGCTTCCACGAGCACTGTACACGTCTGGGAGATAGCAACTCCGGGGTGAAGTTCAGCTACAATCATCCTTCAGGATATTCACACACAGTCAGACCATTTGTATATCGTCCCACCAACGTTCCAACTTACTGCATCTAATAAATATATATAATGTATCATATGGTACAAGCTATGTAAGAAAGCTTGTTTCTGTTATTGTATGTATCCTTGGTTGCCTTGATTTTATTGAAAATCCAGTAGCAATCTGGATATATCTGGTAACACTTGTCTGTTCAATTTACTCAGATAAATTGATGATTTGATTAGTGTAAAGA</genome_strand>
        <mrna_strand>GGGGCCTGAATCCAGTGAGGCAGGCAACAATGGAGTCAAGTTGGTGTAAGGTATTACTTTACCTAACTCTAATTACCAATTTGACCCTACAAGGTGTAAGAGGTTGGACTGGAGAGATTCATGGAAGAGTTGTTTGTGATGTTTGTGCTGATTCCTCTGTTGGTCCGGAAGACCATGTTCTACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGAGGTTGCAGTTCTTTGCATTACGAAGACTGGGGAAGTTCTGAATTATCAGGCATTCACAGACTCCAAGGGGATATATAGAGTGGCTGAGACAATGCCAGCGAGTGATCGTTGGGATGCATGCCTAGCAAGACCTATCAGCAGCTTCCACGAGCACTGTACACGTCTGGGAGATAGCAACTCCGGGGTGAAGTTCAGCTACAATCATCCTTCAGGATATTCACACACAGTCAGACCATTTGTATATCGTCCCACCAACGTTCCAACTTACTGCATCTAATAAATATATATAATGTATCATATGGTACAAGCTATGTAAGAAAGCTTGTTTCTGTTATTGTATGTATCCTTGGTTGCCTTGATTTTATTGAAAATCCAGTAGCAATCTGGATATATCTGGTAACACTTGTCTGTTCAATTTACTCAGATAAATTGATGATTTGATTAGTGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575164" ref_strand="+" ref_description="SGN-U575164 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|77744913|gb|ABB02410.1| (e_value=2e-137) chloroplast; (*ATH) AT3G47860.1 (e_value=2e-103) | Symbol: None | apolipoprotein D-related, contains weak similarity to Apolipoprotein D precursor (ApoD) (Swiss-Prot:P51910) (Mus musculus) | chr3:17667682-17669273 REVERSE | Aliases: T23J7.190; ">
      <seq>aatgattggcttacagctgaagtgaagtaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccatcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggttagtatccttactatattttctctcctaattccagaggcaaaagtggtactacacatatgtatttggttgatttgatagaatagttgtgaaagctgaaggtccggaatgatgctttcatgacttttgggaatgcattctgttacgaattaacttaaagaaaaaatttcagaaattttgttaaactttcaagcgtatcttctttctattggtaggcttttgcagcagacctccctcattacaacagtgtattccaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatccaagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccatgtccggaatgcaacaagctctaaacaaccaatttcctgatttagagttgagacgccctgttcaattcaacccattcacaagcgttttcgaaactctcaagaaacttgctgaactatatttcaagtagtaaatccacttgatatattacttgtatagtgcatagttcttatgactagtggctgtaacacattgaactaaagttcaactatgaatgacatacactccagaaaaatttgtgtgttactattgggaaaatggtacacatatgtgaatgacatgcttatatatggtatgagttttaaaaaacccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="122037" stop="117543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121737" g_stop="121627" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121626" i_stop="120236" i_length="1391">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120235" g_stop="119664" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="684" r_length="573" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119663" i_stop="119518" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119517" g_stop="119227" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="975" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119226" i_stop="118300" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118299" g_stop="117835" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1440" r_length="465" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U575164" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1439</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121737" e_stop="121627"/>
          <exon e_start="120235" e_stop="119664"/>
          <exon e_start="119517" e_stop="119227"/>
          <exon e_start="118299" e_stop="117835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTG-TACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAAATGGTAGACATATGTGAATGACATGCTTATATTTGGTATGAGTTTAAAATATTGTGAAA</genome_strand>
        <mrna_strand>AATGATTGGCTTACAGCTGAAGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCATCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTACACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTCCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAAATGGTACACATATGTGAATGACATGCTTATATATGGTATGAGTTTTAAAAAACCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575165" ref_strand="+" ref_description="SGN-U575165 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|77744913|gb|ABB02410.1| (e_value=6e-168) chloroplast; (*ATH) AT3G47860.1 (e_value=8e-105) | Symbol: None | apolipoprotein D-related, contains weak similarity to Apolipoprotein D precursor (ApoD) (Swiss-Prot:P51910) (Mus musculus) | chr3:17667682-17669273 REVERSE | Aliases: T23J7.190; ">
      <seq>aataattggcttacagctgatgtgaagtaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatccaagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccatgtccggaaatgcacaagctctaaacaccaatttccctgattagagtgagacgccctgttcaattcacccattcacaagcgttttcgaaactctcaagaacttgctgaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="122037" stop="117733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121737" g_stop="121627" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121626" i_stop="120236" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120235" g_stop="120112" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="235" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120111" i_stop="119898" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119897" g_stop="119664" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="469" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119663" i_stop="119518" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119517" g_stop="119227" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="760" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119226" i_stop="118300" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118299" g_stop="118033" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="1023" r_length="263" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U575165" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1027</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121737" e_stop="121627"/>
          <exon e_start="120235" e_stop="120112"/>
          <exon e_start="119897" e_stop="119664"/>
          <exon e_start="119517" e_stop="119227"/>
          <exon e_start="118299" e_stop="118033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGG-AATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTA</genome_strand>
        <mrna_strand>AATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAAATGC-ACAAGCTCTAAAC-ACCAATTTCCCTGATTAGAG-TGAGACGCCCTGTTCAATTC-ACCCATTCACAAGCGTTTTCGAAACTCTCAAG-AACTTGCTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587965" ref_strand="+" ref_description="SGN-U587965 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agttttttgagagtttcgaaaacgcttgtgaatgggttgaattgaacagggcgtcttaactctaaatcaggaaattggatgtttagagcttgttgcgatatcggacatggacattattggtgagggctgactggtaggctttacctcacagtattggggagggtcaatgattgtgcttggatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="117743" stop="118528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118043" g_stop="118228" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U587965" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118043" e_stop="118228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTTGAGAGTTTCGAAAACGCTTGTGAATGGGTTGAATTGAACAGGGCGTCTCAACTCTAAATCAGGAAATTGGTTGTTTAGAGCTTGTTGC-ATTCCGGACATGGACATCATTGCTGATAGCTGACTGGTAGTCTTTACCTCACAGTCTTGTGGAGTGTCATTGATTTTGCTTGGATCATAT</genome_strand>
        <mrna_strand>AGTTTTTTGAGAGTTTCGAAAACGCTTGTGAATGGGTTGAATTGAACAGGGCGTCTTAACTCTAAATCAGGAAATTGGATGTTTAGAGCTTGTTGCGATATCGGACATGGACATTATTGGTGAGGGCTGACTGGTAGGCTTTACCTCACAGTATTGGGGAGGGTCAATGATTGTGCTTGGATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571700" ref_strand="+" ref_description="SGN-U571700 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|42566875|ref|NP_193391.3| (e_value=9e-17) expressed protein [Arabidopsis thaliana]; (*ATH) AT4G16580.1 (e_value=7e-19) | Symbol: None | expressed protein | chr4:9341015-9342868 REVERSE | Aliases: DL4315C, FCAALL.400; ">
      <seq>gggaagttcctctgtgttcttgcacccaaaagtaaacaaaacggaaaagttgtccgccgtcaacgaaaatattttcaggctttacctcctgaactacttgcagcaagcagagtttctctcgttattgattgttacagcggataatggctgtttgtggttcaagaacttctcatattggccattttgttggtaagatggctgctaggcgcctgcattatgcattggcggtaaataatagtagcgtctcttatagcaataggagcattgagaatgttagaaaagccaacattagtttgagaaataaaggccaacctcacaacttcatgttatctcaatattttaaaactagtgttgcaaagaggaagggacatgaaggatttggattagaaggttttcgcgttttatcacttgcacgtttctcttctggaactactgctcccagcagcctgtcttctgataatactaaggaaaaggaacagactgcagatactgttgattcttctgagggaaagatacacctgaagctgaattcgggatcattttatctgcctcatcctgcgaaagcaaaaactggtggagaggatgctcatttcatttatgatcctgcacaagctataggtgtagctgatggggtcggtggatgggctgatcttggtattgatggcaggggaatatgcccgtgaattaatgtctaactgtatgtctgtgatacaagaggaacctaanggattcgtagaccttattagggtcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="+" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="121936" stop="124300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122236" g_stop="122313" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122314" i_stop="123325" i_length="1012">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123326" g_stop="124000" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="754" r_length="676" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="+" ref_id="SGN-U571700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122236" e_stop="122313"/>
          <exon e_start="123326" e_stop="124000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAGGTAAATTTTTTCATTAAATCTGTTCCTTGTTAGGATAATAATAAGGATAAATATGACATTTTTAATCCTAATATATTTTTCTGCTTCTTGAGTCAATAGCCTTGCATTGAGTTTGGAATATTTTGATGTTACCTTTGAGTTTTTTTTTGTCAAATAAATTTAAGATATAATTTGTATATTTGTCACTTTTTTAGCTGTTTATCAACTTCTTAAGATTGTCTGTTAATTAGAATTTATCTATTCTAATATGTTCTTTTGCGCAAGAAACTAGATTCGATGAAACTCAATAACTTTACTTCGAACAGTGTATTTGAATGAAGAAGTTTATTGAATATGTATTCAAGTATTTGATTTAGAACCTGGACATTGTTCTTATATTCCGAACTCATAGAGTTAAAATTTTGGTTCCACCTCAGCACAAGATGGTCCTTGTGCAAAGGAGGATCCATAGTCAAATATTGGTAGATTTCTAATGAACTTTTTAATTACTCCCTTCTTCTCAATTTTGTATGAGTTAGTTCGTTTTGATGCGGAGTTTTAAGATAAAAGAAAGGGTTTTTGAAACTTATGGTCTAAAATAAGTCAGTGCCAAGAAATCATTTCATTAAGGATAAAATGGACACGTTAAAATTAAATTGTTACTAAATGTAGACATTCTTTTCGGGAGTGGTTAAAAAGGAAAGTAAATCATATAAAGTGGGACAAGAGGGAGTAATACATTTACAAGGTATGCTTGAAAGTTACTTCGTTCACGTGAACCATTGCTCCTGTCTCTACACTATGGACTACTTGCTTGTAAGAAGTTATGTTGTTACATTGTTTTCCTTGGTGTAATGGGAATGGGGGAGGTTTTGGGATTAACTGAGAGGGAGATATTGCGAGTTTGAATCATGATGTTTACTCTACTTTATATATTCATGCGTTATCTAGTGTGTTTCGAAAGGGAAAAACAAAGAAACTGTGTTAGATGATGAGAACGTGTAAGGTTTTTATGAGGTGATTGTGTTTGCAGGCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGAT-GCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAAGGATTCCGTAGACCTTATTAGGGTCCTGG</genome_strand>
        <mrna_strand>GGGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGATGGCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAANGGATTCGTAGACCTTATTAGGGTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U604802" ref_strand="+" ref_description="SGN-U604802 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348176|emb|CAO22886.1| (e_value=9e-24) unnamed; (*ATH) AT4G16580.1 (e_value=4e-24) | Symbol: None | expressed protein | chr4:9341015-9342868 REVERSE | Aliases: DL4315C, FCAALL.400; ">
      <seq>caagaacagtgtctttgtatccatcaatgtcaacaagaacaatgtatcaattaggtcatcgtatacaacatatagacatgcctccgtactgtaaatctattaactaaaacacttgacggatcaaggaggcatcactaggcgaattgctagtcacagtcctacttcaaaaacattaaagtttgtggctcaatttgccaatggattggcattgttagttacataagaaacaactacagttatgtcatcaagtttccccccttggtactcaaatccggcctctttggctgcatcagagaaaggtgacggcttagttgtgtccattgctctttgctgtgccaatgctgctatctttttagctgtcatttgtggcccaaagccagcttccacagcatgaatcacaacttccgggatatctgcatcagtataaattgtcaaaaagcccatctgtaccaacgactaagacatctcctggagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="125009" stop="123935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124710" g_stop="124235" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U604802" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124710" e_stop="124235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAGTGTCTTTGTATCCATCAATGTCAACAAGAACAATGTATCAATTAGGTCATCGTATACAACATATAGACATGCCTCCGTACTGTAAATCTATTAACTAAAACACTTGACGGATCAAGGAGGCATCACTAGGCGAATTGCTAGTCACAGTCCTACTTCAAAAACATTAAAGTTTGTGGCTCAATTTGCCAATGGATTGGCATTGTTAGTTACATAAGAAACAACTACAGTTATGTCATCAAGTTTCCCCCCTTGGTACTCAAATCCGGCCTCTTTGGCTGCATCAGAGAAAGGTGACGGCTTAGTTGTGTCCATTGCTCTTTGCTGTGCCAATGCTGCTATCTTTTTAGCTGTCATTTGTGGCCCAAAGCCAGCTTCCACAGCATGAATCACAACTTCCGTGATATCTGCATCA-TATAAATTGTCAAAAAGCCCATCTGTACCAACGACTAAGACATCTCCTGGAGCTA</genome_strand>
        <mrna_strand>CAAGAACAGTGTCTTTGTATCCATCAATGTCAACAAGAACAATGTATCAATTAGGTCATCGTATACAACATATAGACATGCCTCCGTACTGTAAATCTATTAACTAAAACACTTGACGGATCAAGGAGGCATCACTAGGCGAATTGCTAGTCACAGTCCTACTTCAAAAACATTAAAGTTTGTGGCTCAATTTGCCAATGGATTGGCATTGTTAGTTACATAAGAAACAACTACAGTTATGTCATCAAGTTTCCCCCCTTGGTACTCAAATCCGGCCTCTTTGGCTGCATCAGAGAAAGGTGACGGCTTAGTTGTGTCCATTGCTCTTTGCTGTGCCAATGCTGCTATCTTTTTAGCTGTCATTTGTGGCCCAAAGCCAGCTTCCACAGCATGAATCACAACTTCCGGGATATCTGCATCAGTATAAATTGTCAAAAAGCCCATCTGTACCAACGACTAAGACATCTCCTGGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587491" ref_strand="-" ref_description="SGN-U587491 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157337963|emb|CAO39007.1| (e_value=1e-35) unnamed; (*ATH) AT1G50940.1 (e_value=3e-37) | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16; (*SWP) sp|Q9C6I6|ETFA_ARATH (e_value=3e-36) Electron transfer flavoprotein subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ETFA; ">
      <seq>agaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaaatgcacgtattgtagtaactggtggacgaggtgtaaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcaggttttccctctcccgtgacttctgctgtattcaccttgtgcttttttctgctacttctttatcctttatcaatctctccttaacatatttcaaattcttagcaataacttgcataattctgatttcaatctgctttgatttgatcattaaactggattacctctgttctgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcattatttcaattctccaaccttattcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="127058" stop="124664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126758" g_stop="126691" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126690" i_stop="126541" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126540" g_stop="126153" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="456" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126152" i_stop="125834" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125833" g_stop="125693" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="597" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125692" i_stop="125168" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125167" g_stop="124964" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="801" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U587491" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587491" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="126758" e_stop="126691"/>
          <exon e_start="126540" e_stop="126153"/>
          <exon e_start="125833" e_stop="125693"/>
          <exon e_start="125167" e_stop="124964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAG</genome_strand>
        <mrna_strand>AGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565375" ref_strand="+" ref_description="SGN-U565375 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157337963|emb|CAO39007.1| (e_value=4e-121) unnamed; (*ATH) AT1G50940.1 (e_value=9e-119) | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16; (*SWP) sp|Q9C6I6|ETFA_ARATH (e_value=8e-118) Electron transfer flavoprotein subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ETFA; ">
      <seq>ggttatggaataaagaaggtttctaattgagagagagtagacgataatggagttgctgggaggaagaagagcaatcaattgataggttttggtgtgagaaagatagagacgccacgctgaagagatatatacagacacggcagacgccattattaatttatattagtagtaataatctttaatactccataaggactgacatttttgacccaaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatatattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaaagatttctggatcaaacctctttattaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaaatgcacgtattgtagtaactggtggacgaggtgtaaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="130264" stop="124691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129965" g_stop="129650" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129649" i_stop="128641" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128640" g_stop="128458" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="499" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128457" i_stop="127617" i_length="841">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127616" g_stop="127405" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="711" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127404" i_stop="126855" i_length="550">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126854" g_stop="126691" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="875" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126690" i_stop="126541" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126540" g_stop="126379" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1037" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="126378" i_stop="126206" i_length="173">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="126205" g_stop="126153" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1090" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="126152" i_stop="125834" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125833" g_stop="125693" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1231" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125692" i_stop="125168" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="125167" g_stop="124991" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1408" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U565375" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129965" e_stop="129650"/>
          <exon e_start="128640" e_stop="128458"/>
          <exon e_start="127616" e_stop="127405"/>
          <exon e_start="126854" e_stop="126691"/>
          <exon e_start="126540" e_stop="126379"/>
          <exon e_start="126205" e_stop="126153"/>
          <exon e_start="125833" e_stop="125693"/>
          <exon e_start="125167" e_stop="124991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATT</genome_strand>
        <mrna_strand>GGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG.............................................................................................................................................................................TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587489" ref_strand="+" ref_description="SGN-U587489 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15223680|ref|NP_175507.1| (e_value=8e-18) electron transport flavo protein -related [Arabidopsis thaliana]; (*ATH) AT1G50940.1 (e_value=6e-20) | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16; (*SWP) sp|Q9C6I6|ETFA_ARATH (e_value=5e-19) Electron transfer flavoprotein subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ETFA; ">
      <seq>ttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="128940" stop="126183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128640" g_stop="128458" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="191" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128457" i_stop="126855" i_length="1603">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126854" g_stop="126691" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="355" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126690" i_stop="126541" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126540" g_stop="126483" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="413" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U587489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128640" e_stop="128458"/>
          <exon e_start="126854" e_stop="126691"/>
          <exon e_start="126540" e_stop="126483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCC</genome_strand>
        <mrna_strand>CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587490" ref_strand="+" ref_description="SGN-U587490 Tomato 200607#2 [1 ESTs aligned] (*ATH) AT1G50940.1 (e_value=5e-11) | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16; ">
      <seq>gcaaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtaactcctctttggatgctggactgttttgtttcaccatgtttcccacggaatactaaccttatgctcctactggttttgcaatttagtttgctcgcttttcagtaacatcttggctaggacatccctagttcagtgtgaaaaagagtagttgtattctattgacatacttaagtgattgtgtaaaacacatttacaatgttcacttcgttacagagagagaatgatcttccgaggaggagaaaagagaggatgatattgctttttctctgtcttcttgtactaaaattcttggaaatgccattttcaactgagtgctgaactttggcaagcaagccatagaacaaaatccaggaacgatgataggtgatcttgtcaagagtatccaaagtatacctgttaactcttactcacaatattatcacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0030P17-Au93H/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0030P17.1" temp_strand="-" temp_description="C12SLm0030P17.1  AC235698.2 htgs_phase:1 submitted_to_sgn_as:gi|239504892|gb|AC235698.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-30P17, WORKING DRAFT SEQUENCE, 5 unordered pieces">
        <position start="130055" stop="127727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129756" g_stop="129650" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129649" i_stop="128641" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128640" g_stop="128027" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="721" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0030P17.1" gen_strand="-" ref_id="SGN-U587490" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0030P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129756" e_stop="129650"/>
          <exon e_start="128640" e_stop="128027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGG</genome_strand>
        <mrna_strand>GCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>32</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5437" PGL_stop="13218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5437" e_stop="5651"/>
            <exon e_start="8902" e_stop="9123"/>
            <exon e_start="9802" e_stop="9832"/>
            <exon e_start="10290" e_stop="10456"/>
            <exon e_start="12346" e_stop="12502"/>
            <exon e_start="13157" e_stop="13218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.926" e_score="0.981"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5437" e_stop="5651" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="5652" i_stop="8901" i_length="3250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8902" e_stop="9123" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9124" i_stop="9801" i_length="678"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9802" e_stop="9832" e_length="31"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9833" i_stop="10289" i_length="457"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10290" e_stop="10456" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.680" acc_prob="0.959">
            <gDNA_intron_boundary i_start="10457" i_stop="12345" i_length="1889"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="12346" e_stop="12502" e_length="157"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.926">
            <gDNA_intron_boundary i_start="12503" i_stop="13156" i_length="654"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="13157" e_stop="13218" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5437" stop="5651"/>
              <exon start="8902" stop="9123"/>
              <exon start="9802" stop="9832"/>
              <exon start="10290" stop="10456"/>
              <exon start="12346" stop="12502"/>
              <exon start="13157" stop="13218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCGAGACATATATATATATATATATACCTTACCAAAAAATTGACATTTTTCTCTGAAATTCACATAGCATCCTGTAGCTAATTGCACAACTTTGGCTTCATGGAACTCAAATTTCGACATCGAGATTACAAAAGTGAAGAACAAGTTCACTCTCTCCATCGGGTGGCAGCAGTGACTCATCCTCTCTCACTTCAATCACCGTCGCGTGACCAG : GTTGATGTTACGGATTATGGCAGGGACGAGTTCTTTGATCCATTAAGGGGGGATCATGGAAAACCAGAGGATTCCATGAAGGGATTAGGAAGAACATCTACTGAAATTGCAGGTGAACCATATAGAGATATTGCTATTCATTTTCTGGGCAAGGAGTGGACATCTTACAAGAAAGTCTTGATGCAAAAATTTCCTGTCTCCAAAATGATCTCTATTTCTTCG : CTGTCAAGCTCAATTATGAAGACAGGCAAGG : GTCCTGAGAAACCCTCGACAGATGTACATTTAGAGGAGCTAGATGAAGAAGGTGTTAACTATATCACCCTGCAGGAGTATGTCTCACGCTTAACTGAACTTAAAGATGAAATTAGTCGTGCCTGGCATGCAAGTGACCGTGTAACCTCCTTTAATTTGTCAATCAAG : GTTGCTAAGTTACTGTCGGACACATCTGTACTACAATTTTATCCAACACTTTTTGTTCTAGCTACAGAAATACTAGATATGTTAGGGGATATGGTATGGGAACGCATCAGGCAGAAAGCTGAATACACTGAATATGGGACATTAGTCCATTTACCAG : ATAACTTTCAAGCAACTCATATCTGTGCTGAAGCCAAAGAAACCTGCTATAACTGGTTTTGC</gDNA_template>
            <first_frame> E  R  D  I  Y  I  Y  I  Y  T  L  P  K  N  *  H  F  S  L  K  F  T  *  H  P  V  A  N  C  T  T  L  A  S  W  N  S  N  F  D  I  E  I  T  K  V  K  N  K  F  T  L  S  I  G  W  Q  Q  *  L  I  L  S  H  F  N  H  R  R  V  T  R :   L  M  L  R  I  M  A  G  T  S  S  L  I  H  *  G  G  I  M  E  N  Q  R  I  P  *  R  D  *  E  E  H  L  L  K  L  Q  V  N  H  I  E  I  L  L  F  I  F  W  A  R  S  G  H  L  T  R  K  S  *  C  K  N  F  L  S  P  K  *  S  L  F  L  R :   C  Q  A  Q  L  *  R  Q  A  R  :  V  L  R  N  P  R  Q  M  Y  I  *  R  S  *  M  K  K  V  L  T  I  S  P  C  R  S  M  S  H  A  *  L  N  L  K  M  K  L  V  V  P  G  M  Q  V  T  V  *  P  P  L  I  C  Q  S  R :   L  L  S  Y  C  R  T  H  L  Y  Y  N  F  I  Q  H  F  L  F  *  L  Q  K  Y  *  I  C  *  G  I  W  Y  G  N  A  S  G  R  K  L  N  T  L  N  M  G  H  *  S  I  Y  Q  :  I  T  F  K  Q  L  I  S  V  L  K  P  K  K  P  A  I  T  G  F   </first_frame>
            <second_frame>  S  E  T  Y  I  Y  I  Y  I  P  Y  Q  K  I  D  I  F  L  *  N  S  H  S  I  L  *  L  I  A  Q  L  W  L  H  G  T  Q  I  S  T  S  R  L  Q  K  *  R  T  S  S  L  S  P  S  G  G  S  S  D  S  S  S  L  T  S  I  T  V  A  *  P   : G  *  C  Y  G  L  W  Q  G  R  V  L  *  S  I  K  G  G  S  W  K  T  R  G  F  H  E  G  I  R  K  N  I  Y  *  N  C  R  *  T  I  *  R  Y  C  Y  S  F  S  G  Q  G  V  D  I  L  Q  E  S  L  D  A  K  I  S  C  L  Q  N  D  L  Y  F  F   : A  V  K  L  N  Y  E  D  R  Q  G :   S  *  E  T  L  D  R  C  T  F  R  G  A  R  *  R  R  C  *  L  Y  H  P  A  G  V  C  L  T  L  N  *  T  *  R  *  N  *  S  C  L  A  C  K  *  P  C  N  L  L  *  F  V  N  Q   : G  C  *  V  T  V  G  H  I  C  T  T  I  L  S  N  T  F  C  S  S  Y  R  N  T  R  Y  V  R  G  Y  G  M  G  T  H  Q  A  E  S  *  I  H  *  I  W  D  I  S  P  F  T  R :   *  L  S  S  N  S  Y  L  C  *  S  Q  R  N  L  L  *  L  V  L  </second_frame>
            <third_frame>   A  R  H  I  Y  I  Y  I  Y  L  T  K  K  L  T  F  F  S  E  I  H  I  A  S  C  S  *  L  H  N  F  G  F  M  E  L  K  F  R  H  R  D  Y  K  S  E  E  Q  V  H  S  L  H  R  V  A  A  V  T  H  P  L  S  L  Q  S  P  S  R  D  Q  :  V  D  V  T  D  Y  G  R  D  E  F  F  D  P  L  R  G  D  H  G  K  P  E  D  S  M  K  G  L  G  R  T  S  T  E  I  A  G  E  P  Y  R  D  I  A  I  H  F  L  G  K  E  W  T  S  Y  K  K  V  L  M  Q  K  F  P  V  S  K  M  I  S  I  S  S  :  L  S  S  S  I  M  K  T  G  K   : G  P  E  K  P  S  T  D  V  H  L  E  E  L  D  E  E  G  V  N  Y  I  T  L  Q  E  Y  V  S  R  L  T  E  L  K  D  E  I  S  R  A  W  H  A  S  D  R  V  T  S  F  N  L  S  I  K  :  V  A  K  L  L  S  D  T  S  V  L  Q  F  Y  P  T  L  F  V  L  A  T  E  I  L  D  M  L  G  D  M  V  W  E  R  I  R  Q  K  A  E  Y  T  E  Y  G  T  L  V  H  L  P   : D  N  F  Q  A  T  H  I  C  A  E  A  K  E  T  C  Y  N  W  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5520" stop="5651"/>
                    <exon start="8902" stop="9123"/>
                    <exon start="9802" stop="9832"/>
                    <exon start="10290" stop="10456"/>
                    <exon start="12346" stop="12502"/>
                    <exon start="13157" stop="13218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHNFGFMELKFRHRDYKSEEQVHSLHRVAAVTHPLSLQSPSRDQVDVTDYGRDEFFDPLRGDHGKPEDSMKGLGRTSTEIAGEPYRDIAIHFLGKEWTSYKKVLMQKFPVSKMISISSLSSSIMKTGKGPEKPSTDVHLEELDEEGVNYITLQEYVSRLTELKDEISRAWHASDRVTSFNLSIKVAKLLSDTSVLQFYPTLFVLATEILDMLGDMVWERIRQKAEYTEYGTLVHLPDNFQATHICAEAKETCYNWFC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="28696" PGL_stop="40940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28696" e_stop="28857"/>
            <exon e_start="28934" e_stop="29021"/>
            <exon e_start="29977" e_stop="30054"/>
            <exon e_start="37398" e_stop="37464"/>
            <exon e_start="37536" e_stop="37635"/>
            <exon e_start="39796" e_stop="39912"/>
            <exon e_start="40003" e_stop="40059"/>
            <exon e_start="40313" e_stop="40781"/>
            <exon e_start="40910" e_stop="40940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.702" e_score="0.987"/>
          <exon-only e_score="0.548"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28696" e_stop="28857" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28858" i_stop="28933" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28934" e_stop="29021" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29022" i_stop="29976" i_length="955"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29977" e_stop="30054" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.859">
            <gDNA_intron_boundary i_start="30055" i_stop="37397" i_length="7343"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37398" e_stop="37464" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37465" i_stop="37535" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37536" e_stop="37635" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.578">
            <gDNA_intron_boundary i_start="37636" i_stop="39795" i_length="2160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39796" e_stop="39912" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.620">
            <gDNA_intron_boundary i_start="39913" i_stop="40002" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="40003" e_stop="40059" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="40060" i_stop="40312" i_length="253"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="40313" e_stop="40781" e_length="469"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.702">
            <gDNA_intron_boundary i_start="40782" i_stop="40909" i_length="128"/>
          </intron>
          <exon e_serial="9" e_score="0.548">
            <gDNA_exon_boundary e_start="40910" e_stop="40940" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28696" stop="28857"/>
              <exon start="28934" stop="29021"/>
              <exon start="29977" stop="30054"/>
              <exon start="37398" stop="37464"/>
              <exon start="37536" stop="37635"/>
              <exon start="39796" stop="39912"/>
              <exon start="40003" stop="40059"/>
              <exon start="40313" stop="40781"/>
              <exon start="40910" stop="40940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584855" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGATTGTTCATTCCAGCAATTTACTGGTGGTTAAAGCTACACGGAATGACATTAGTGATGTCATTTTTGTCAAATCTTGTATAGCATGCAGTGAAGTTACAATATCATCTATCCCATCTCATCTGAAACAGTTAAACCTCTACTTGGAAACTGCAGAG : GTTGCATTAATGGCTGGTTTAGTTTCTAACTCAGATGGACTTGTTGATTCAGCATTGAGGTGCTTGCATAATGTTGACTTATTTGAAG : GATCAAGGATGCCCAAGGACATTGATGGGTTTCAATCAACATTATGCAAATTTTGCAGTCTTATTGTTATGATTCCAG : GTAACATTGAGCGAGGAGTCACTAGCATCCCTAGGAATATGTTTTCCATCCTCAGCTCCTTGTCATG : GATGCTGCCAAGTATGAAGGCAAAGATGTTATGTGCACTCATCTTAACAGTTGCTGCGTTGTCCCAGAATAATCTCCTGTACCATGCAACACATGATGAG : GTTATGGGCAATGACTCTTTGTTCTATTGTGATCAACAATATCTGCAAGAGCTTTCTTCATTTTCTGCAGTTCTTCTTCAGAGCTTAATTGATACTGTTGTACAAGAACCAATACAG : GCTGCCCGAGGAAATCTCGCACTTGATGCTTGCAATGCTATTGCATCTTCTTTTGAA : GTATGTCAAGGAGCATCAGATTTTTCCTCCAAGCTGGTCGAAACTGCCAAGCTGTCTTTGAGCTCTAACAACAAATATCTTCAGTCTACAATAGAGTTTCTCAACAACCGTGGACTTGTGCAAAGGGGAGAGACGTAAAAAGCAGGAAATAACATGTGTTGTGTTTGCTGTTGTTAAAAAGAAATCACTTTTTGTCAAATTTTACTTCACTTGTCCCCAACTGGAGATAAATATCAACTAGGCAAAATGAAGAGATTTTTTAGATGTTTTGGAAATTTCCAAAGAAATGGTAGCACCTTCCTTGGGTATATTTGACATGGAAGAGAAGTAGAATGATTAAATCAAGCAATATACTTTTTCTCTTGACATGGAAGCGGGAAGGGACTTTTCTAAGAAGGGCTTGAGACCTATGAATACACATTTAAGTGTTGCTATTACATATTTCATCTCTAATAATAGATAGATCCAT : TTCGAAAAAAGGAAAATCAACAAGACATACA</gDNA_template>
            <first_frame> E  M  I  V  H  S  S  N  L  L  V  V  K  A  T  R  N  D  I  S  D  V  I  F  V  K  S  C  I  A  C  S  E  V  T  I  S  S  I  P  S  H  L  K  Q  L  N  L  Y  L  E  T  A  E  :  V  A  L  M  A  G  L  V  S  N  S  D  G  L  V  D  S  A  L  R  C  L  H  N  V  D  L  F  E   : G  S  R  M  P  K  D  I  D  G  F  Q  S  T  L  C  K  F  C  S  L  I  V  M  I  P   : G  N  I  E  R  G  V  T  S  I  P  R  N  M  F  S  I  L  S  S  L  S  W :   M  L  P  S  M  K  A  K  M  L  C  A  L  I  L  T  V  A  A  L  S  Q  N  N  L  L  Y  H  A  T  H  D  E  :  V  M  G  N  D  S  L  F  Y  C  D  Q  Q  Y  L  Q  E  L  S  S  F  S  A  V  L  L  Q  S  L  I  D  T  V  V  Q  E  P  I  Q  :  A  A  R  G  N  L  A  L  D  A  C  N  A  I  A  S  S  F  E  :  V  C  Q  G  A  S  D  F  S  S  K  L  V  E  T  A  K  L  S  L  S  S  N  N  K  Y  L  Q  S  T  I  E  F  L  N  N  R  G  L  V  Q  R  G  E  T  *  K  A  G  N  N  M  C  C  V  C  C  C  *  K  E  I  T  F  C  Q  I  L  L  H  L  S  P  T  G  D  K  Y  Q  L  G  K  M  K  R  F  F  R  C  F  G  N  F  Q  R  N  G  S  T  F  L  G  Y  I  *  H  G  R  E  V  E  *  L  N  Q  A  I  Y  F  F  S  *  H  G  S  G  K  G  L  F  *  E  G  L  E  T  Y  E  Y  T  F  K  C  C  Y  Y  I  F  H  L  *  *  *  I  D  P   : F  R  K  K  E  N  Q  Q  D  I   </first_frame>
            <second_frame>  K  *  L  F  I  P  A  I  Y  W  W  L  K  L  H  G  M  T  L  V  M  S  F  L  S  N  L  V  *  H  A  V  K  L  Q  Y  H  L  S  H  L  I  *  N  S  *  T  S  T  W  K  L  Q  R :   L  H  *  W  L  V  *  F  L  T  Q  M  D  L  L  I  Q  H  *  G  A  C  I  M  L  T  Y  L  K  :  D  Q  G  C  P  R  T  L  M  G  F  N  Q  H  Y  A  N  F  A  V  L  L  L  *  F  Q  :  V  T  L  S  E  E  S  L  A  S  L  G  I  C  F  P  S  S  A  P  C  H   : G  C  C  Q  V  *  R  Q  R  C  Y  V  H  S  S  *  Q  L  L  R  C  P  R  I  I  S  C  T  M  Q  H  M  M  R :   L  W  A  M  T  L  C  S  I  V  I  N  N  I  C  K  S  F  L  H  F  L  Q  F  F  F  R  A  *  L  I  L  L  Y  K  N  Q  Y  R :   L  P  E  E  I  S  H  L  M  L  A  M  L  L  H  L  L  L  K :   Y  V  K  E  H  Q  I  F  P  P  S  W  S  K  L  P  S  C  L  *  A  L  T  T  N  I  F  S  L  Q  *  S  F  S  T  T  V  D  L  C  K  G  E  R  R  K  K  Q  E  I  T  C  V  V  F  A  V  V  K  K  K  S  L  F  V  K  F  Y  F  T  C  P  Q  L  E  I  N  I  N  *  A  K  *  R  D  F  L  D  V  L  E  I  S  K  E  M  V  A  P  S  L  G  I  F  D  M  E  E  K  *  N  D  *  I  K  Q  Y  T  F  S  L  D  M  E  A  G  R  D  F  S  K  K  G  L  R  P  M  N  T  H  L  S  V  A  I  T  Y  F  I  S  N  N  R  *  I  H  :  F  E  K  R  K  I  N  K  T  Y  </second_frame>
            <third_frame>   N  D  C  S  F  Q  Q  F  T  G  G  *  S  Y  T  E  *  H  *  *  C  H  F  C  Q  I  L  Y  S  M  Q  *  S  Y  N  I  I  Y  P  I  S  S  E  T  V  K  P  L  L  G  N  C  R   : G  C  I  N  G  W  F  S  F  *  L  R  W  T  C  *  F  S  I  E  V  L  A  *  C  *  L  I  *  R :   I  K  D  A  Q  G  H  *  W  V  S  I  N  I  M  Q  I  L  Q  S  Y  C  Y  D  S  R :   *  H  *  A  R  S  H  *  H  P  *  E  Y  V  F  H  P  Q  L  L  V  M  :  D  A  A  K  Y  E  G  K  D  V  M  C  T  H  L  N  S  C  C  V  V  P  E  *  S  P  V  P  C  N  T  *  *   : G  Y  G  Q  *  L  F  V  L  L  *  S  T  I  S  A  R  A  F  F  I  F  C  S  S  S  S  E  L  N  *  Y  C  C  T  R  T  N  T   : G  C  P  R  K  S  R  T  *  C  L  Q  C  Y  C  I  F  F  *   : S  M  S  R  S  I  R  F  F  L  Q  A  G  R  N  C  Q  A  V  F  E  L  *  Q  Q  I  S  S  V  Y  N  R  V  S  Q  Q  P  W  T  C  A  K  G  R  D  V  K  S  R  K  *  H  V  L  C  L  L  L  L  K  R  N  H  F  L  S  N  F  T  S  L  V  P  N  W  R  *  I  S  T  R  Q  N  E  E  I  F  *  M  F  W  K  F  P  K  K  W  *  H  L  P  W  V  Y  L  T  W  K  R  S  R  M  I  K  S  S  N  I  L  F  L  L  T  W  K  R  E  G  T  F  L  R  R  A  *  D  L  *  I  H  I  *  V  L  L  L  H  I  S  S  L  I  I  D  R  S  I :   S  K  K  G  K  S  T  R  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28696" stop="28857"/>
                    <exon start="28934" stop="29021"/>
                    <exon start="29977" stop="30054"/>
                    <exon start="37398" stop="37464"/>
                    <exon start="37536" stop="37635"/>
                    <exon start="39796" stop="39912"/>
                    <exon start="40003" stop="40059"/>
                    <exon start="40313" stop="40450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMIVHSSNLLVVKATRNDISDVIFVKSCIACSEVTISSIPSHLKQLNLYLETAEVALMAGLVSNSDGLVDSALRCLHNVDLFEGSRMPKDIDGFQSTLCKFCSLIVMIPGNIERGVTSIPRNMFSILSSLSWMLPSMKAKMLCALILTVAALSQNNLLYHATHDEVMGNDSLFYCDQQYLQELSSFSAVLLQSLIDTVVQEPIQAARGNLALDACNAIASSFEVCQGASDFSSKLVETAKLSLSSNNKYLQSTIEFLNNRGLVQRGET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30694" e_stop="31297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30694" e_stop="31297" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30694" stop="31297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCCAATGACCAGCACTTGGACAGTCCATAAATAGACTTACAACACTTACATGATTAACAATGTCAGGAGTCACTACAAGGTAGTTCAACATACTAACCAGTCACCTATATGTTTCAGGATCACTAAGGGGCTCCCCTATCTTTGCAGGAGCTCCCCTATCTTGGCAGAAGCTTAGCATTTGGGTCCATAAGAGTGTGAATTGAGCAAGAGCCCTTCCATACGGAAATGTCTACTTCCTGTTATTCCCGTCTCCTCAAGAATGTCTAGTACATATTCTGTTGTGAATTGACAATACCTGACTTAGACAGAGCAAACTCAATACCTAGAAAATACTTCAATCCAGGAAACCCTTAGTTTGGAAGTGCTGAAAGATATATTGCTTCAATCCAGTGATACCATCTTGATCATTGCCAATAATGACTATATCAAACATAACCCACTAAGTTGATTCAAAGACTTAAGAGAAGAATACTGTATAAAACTCATAATGATCAGTTGCACTAAAATTCATGCCAACTGCTTAATTGAGATGAACTTACCAAATCAGGCTTGAGGGGACTGTTTTAGACGAGAAAGTGATCGTCGCAATAAGTGACTCCCC</gDNA_template>
            <first_frame> H  S  N  D  Q  H  L  D  S  P  *  I  D  L  Q  H  L  H  D  *  Q  C  Q  E  S  L  Q  G  S  S  T  Y  *  P  V  T  Y  M  F  Q  D  H  *  G  A  P  L  S  L  Q  E  L  P  Y  L  G  R  S  L  A  F  G  S  I  R  V  *  I  E  Q  E  P  F  H  T  E  M  S  T  S  C  Y  S  R  L  L  K  N  V  *  Y  I  F  C  C  E  L  T  I  P  D  L  D  R  A  N  S  I  P  R  K  Y  F  N  P  G  N  P  *  F  G  S  A  E  R  Y  I  A  S  I  Q  *  Y  H  L  D  H  C  Q  *  *  L  Y  Q  T  *  P  T  K  L  I  Q  R  L  K  R  R  I  L  Y  K  T  H  N  D  Q  L  H  *  N  S  C  Q  L  L  N  *  D  E  L  T  K  S  G  L  R  G  L  F  *  T  R  K  *  S  S  Q  *  V  T  P  </first_frame>
            <second_frame>  I  P  M  T  S  T  W  T  V  H  K  *  T  Y  N  T  Y  M  I  N  N  V  R  S  H  Y  K  V  V  Q  H  T  N  Q  S  P  I  C  F  R  I  T  K  G  L  P  Y  L  C  R  S  S  P  I  L  A  E  A  *  H  L  G  P  *  E  C  E  L  S  K  S  P  S  I  R  K  C  L  L  P  V  I  P  V  S  S  R  M  S  S  T  Y  S  V  V  N  *  Q  Y  L  T  *  T  E  Q  T  Q  Y  L  E  N  T  S  I  Q  E  T  L  S  L  E  V  L  K  D  I  L  L  Q  S  S  D  T  I  L  I  I  A  N  N  D  Y  I  K  H  N  P  L  S  *  F  K  D  L  R  E  E  Y  C  I  K  L  I  M  I  S  C  T  K  I  H  A  N  C  L  I  E  M  N  L  P  N  Q  A  *  G  D  C  F  R  R  E  S  D  R  R  N  K  *  L  P </second_frame>
            <third_frame>   F  Q  *  P  A  L  G  Q  S  I  N  R  L  T  T  L  T  *  L  T  M  S  G  V  T  T  R  *  F  N  I  L  T  S  H  L  Y  V  S  G  S  L  R  G  S  P  I  F  A  G  A  P  L  S  W  Q  K  L  S  I  W  V  H  K  S  V  N  *  A  R  A  L  P  Y  G  N  V  Y  F  L  L  F  P  S  P  Q  E  C  L  V  H  I  L  L  *  I  D  N  T  *  L  R  Q  S  K  L  N  T  *  K  I  L  Q  S  R  K  P  L  V  W  K  C  *  K  I  Y  C  F  N  P  V  I  P  S  *  S  L  P  I  M  T  I  S  N  I  T  H  *  V  D  S  K  T  *  E  K  N  T  V  *  N  S  *  *  S  V  A  L  K  F  M  P  T  A  *  L  R  *  T  Y  Q  I  R  L  E  G  T  V  L  D  E  K  V  I  V  A  I  S  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0030P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="47592" PGL_stop="40855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47592" e_stop="47443"/>
            <exon e_start="47367" e_stop="47316"/>
            <exon e_start="47222" e_stop="47157"/>
            <exon e_start="46090" e_stop="46030"/>
            <exon e_start="45948" e_stop="45921"/>
            <exon e_start="44970" e_stop="44900"/>
            <exon e_start="43988" e_stop="43914"/>
            <exon e_start="43840" e_stop="43785"/>
            <exon e_start="43703" e_stop="43659"/>
            <exon e_start="43550" e_stop="43269"/>
            <exon e_start="43166" e_stop="43072"/>
            <exon e_start="42155" e_stop="42065"/>
            <exon e_start="41979" e_stop="41869"/>
            <exon e_start="41709" e_stop="41515"/>
            <exon e_start="41421" e_stop="40855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.869" acc_prob="0.964" e_score="0.940"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.388" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.292" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="47592" e_stop="47443" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.869" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47442" i_stop="47368" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47367" e_stop="47316" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47315" i_stop="47223" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47222" e_stop="47157" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.850">
            <gDNA_intron_boundary i_start="47156" i_stop="46091" i_length="1066"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46090" e_stop="46030" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46029" i_stop="45949" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45948" e_stop="45921" e_length="28"/>
          </exon>
          <intron i_serial="5" don_prob="0.388" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45920" i_stop="44971" i_length="950"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44970" e_stop="44900" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.872" acc_prob="0.292">
            <gDNA_intron_boundary i_start="44899" i_stop="43989" i_length="911"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43988" e_stop="43914" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43913" i_stop="43841" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43840" e_stop="43785" e_length="56"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="43784" i_stop="43704" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43703" e_stop="43659" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43658" i_stop="43551" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43550" e_stop="43269" e_length="282"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.630">
            <gDNA_intron_boundary i_start="43268" i_stop="43167" i_length="102"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="43166" e_stop="43072" e_length="95"/>
          </exon>
          <intron i_serial="11" don_prob="0.941" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43071" i_stop="42156" i_length="916"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="42155" e_stop="42065" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42064" i_stop="41980" i_length="85"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41979" e_stop="41869" e_length="111"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41868" i_stop="41710" i_length="159"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="41709" e_stop="41515" e_length="195"/>
          </exon>
          <intron i_serial="14" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="41514" i_stop="41422" i_length="93"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="41421" e_stop="40855" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47592" stop="47443"/>
              <exon start="47367" stop="47316"/>
              <exon start="47222" stop="47157"/>
              <exon start="46090" stop="46030"/>
              <exon start="45948" stop="45921"/>
              <exon start="44970" stop="44900"/>
              <exon start="43988" stop="43914"/>
              <exon start="43840" stop="43785"/>
              <exon start="43703" stop="43659"/>
              <exon start="43550" stop="43403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47557" stop="47443"/>
              <exon start="47367" stop="47316"/>
              <exon start="47222" stop="47157"/>
              <exon start="46090" stop="46030"/>
              <exon start="45948" stop="45921"/>
              <exon start="44970" stop="44900"/>
              <exon start="43988" stop="43914"/>
              <exon start="43840" stop="43785"/>
              <exon start="43703" stop="43659"/>
              <exon start="43550" stop="43269"/>
              <exon start="43166" stop="43072"/>
              <exon start="42155" stop="42065"/>
              <exon start="41979" stop="41869"/>
              <exon start="41709" stop="41515"/>
              <exon start="41421" stop="40855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTATTCCTCACCTCCTTCTGGAAGGCAAAAGCAAAGAATAGTCTGAATAATAAGAAGAATAAAAAAGCAAAGCTGCTGTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAG : GACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCG : GGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAG : ATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTG : GATGCTCAGTGAACATGAGGCCAGATAG : GGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTG : GTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGA : ATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAG : GTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAG : TTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGGCTTCAAGGTTGCTATCATTTCAAAATCCGGTGAGGGTGTGGAGAGTGTAGATCATGTTGCTCCTTCTGAGAAGCCATCTGAAAAAGAAGCTCTAAAGCCAACTTCTCCCATTCAAGAGAAAAAGGTGGAAGAGGTGAAATCCAAACTTGAGGTGGCTCCTGTGAAGGAGAATTCTAAGGCAACTTCACCGCCCCCTAAACGGTCTGCTACAGAACCCCAACTTCCACCCAAAGAACGGGAAAGACGA : GTTCCCATGACTAGGCTCAGGAAAAGAGTTGCCACTCGATTGAAAGATTCTCAGAACACCTTCGCATTGTTGACTACATTCAATGAAGTTGATAT : GACAAATTTGATGAAGCTCCGATCTGAGTACAAAGACACGTTTGTTGAAAAGCACGGTGTGAAGTTAGGACTCATGTCCGGATTTGTGAAG : GCAGCTGTTAGTGCACTCCAGAATCAACCTATAGTAAATGCAGTTATTGATGGTGATGACATCATATATCGGGACTATGTAGACATCAGTATAGCTGTTGGCACCCCAAAG : GGTCTGGTTGTACCTGTTCTCCGCGACGTTGACCGGATGAATTTTGCTGAGATAGAAAAGACAATAAACGAGCTTGCTAAGAAGGCAACTAATGGAACCATCTCTATTGATGAAATGGCTGGAGGATCGTTTACAATATCCAATGGTGGTGTGTATGGAAGTCTTCTAAGTACTCCCATCATAAATCCTCCTCAG : TCTGCTATCTTGGGAATGCATTCAATAGTGAATCGCCCAATGGTTGTTGGAGGCGTCATTGTCTCAAGACCAATGATGTACATTGCGCTGACATATGATCATAGGCTGATTGATGGAAGAGAGGCAGTTTACTTTTTGAGAAGGATTAAAGATGTGGTAGAAGATCCACGCCGCCTACTCCTTGATGTTTGAAGATTTAAGATATACAACCATCCGTGGCTTTTGATTTGACTTTTCGTGGTATACCCAAGTGTTTGCGCAAGCTGAAAACCAGAAAATAAACGTTTGTCAAAGTTATTGAGGCCTTTGACATTGCTTTTGTCCCTGATTGTTTAATCAAGTTGCAGCAAATCTACATGCAAATAGAGATATGTAACAAACAATTCAATATTCATCCTTTTCCACAACTCTTGTATGTTTTTCTCATGATGCCCAAGGATTGCTTGAATACATTTTACCAGCTTGATGTCTTTATGCATTTTGTATGTCTTGTTGATTTTCCTTTTTTCGAACTGTATTGGAATTCACTTGTGTTTCAGATCCATCCATACAACAATAATTAGTTTT</gDNA_template>
            <first_frame> S  L  F  L  T  S  F  W  K  A  K  A  K  N  S  L  N  N  K  K  N  K  K  A  K  L  L  L  E  V  R  T  C  S  P  L  R  L  S  F  L  L  N  P  T  P  L  I  L  *  :  D  Q  I  Y  D  A  G  R  F  K  A  Q  G  C  F  C  F   : G  F  R  E  I  Y  V  C  S  S  T  Y  L  *  N  F  I  Y  C  N  *  R   : D  I  T  S  S  Y  T  M  R  S  C  S  A  I  Q  S  S  C  F  T  W :   M  L  S  E  H  E  A  R  *  :  G  S  C  G  *  F  S  L  K  S  I  T  T  D  L  H  Q  A  F  L  F  K  *  W :   *  S  G  R  C  C  C  S  L  Y  G  R  I  H  K  R  W  H  T  G  *  I  A  E  E :   S  W  *  Q  S  R  S  *  *  A  N  C  S  D  *  N  R  Q   : G  N  N  *  C  N  Q  S  *  G  R  C  N  P  K   : V  C  S  *  G  R  R  Y  C  G  T  R  L  Q  G  C  Y  H  F  K  I  R  *  G  C  G  E  C  R  S  C  C  S  F  *  E  A  I  *  K  R  S  S  K  A  N  F  S  H  S  R  E  K  G  G  R  G  E  I  Q  T  *  G  G  S  C  E  G  E  F  *  G  N  F  T  A  P  *  T  V  C  Y  R  T  P  T  S  T  Q  R  T  G  K  T   : S  S  H  D  *  A  Q  E  K  S  C  H  S  I  E  R  F  S  E  H  L  R  I  V  D  Y  I  Q  *  S  *  Y  :  D  K  F  D  E  A  P  I  *  V  Q  R  H  V  C  *  K  A  R  C  E  V  R  T  H  V  R  I  C  E   : G  S  C  *  C  T  P  E  S  T  Y  S  K  C  S  Y  *  W  *  *  H  H  I  S  G  L  C  R  H  Q  Y  S  C  W  H  P  K   : G  S  G  C  T  C  S  P  R  R  *  P  D  E  F  C  *  D  R  K  D  N  K  R  A  C  *  E  G  N  *  W  N  H  L  Y  *  *  N  G  W  R  I  V  Y  N  I  Q  W  W  C  V  W  K  S  S  K  Y  S  H  H  K  S  S  S   : V  C  Y  L  G  N  A  F  N  S  E  S  P  N  G  C  W  R  R  H  C  L  K  T  N  D  V  H  C  A  D  I  *  S  *  A  D  *  W  K  R  G  S  L  L  F  E  K  D  *  R  C  G  R  R  S  T  P  P  T  P  *  C  L  K  I  *  D  I  Q  P  S  V  A  F  D  L  T  F  R  G  I  P  K  C  L  R  K  L  K  T  R  K  *  T  F  V  K  V  I  E  A  F  D  I  A  F  V  P  D  C  L  I  K  L  Q  Q  I  Y  M  Q  I  E  I  C  N  K  Q  F  N  I  H  P  F  P  Q  L  L  Y  V  F  L  M  M  P  K  D  C  L  N  T  F  Y  Q  L  D  V  F  M  H  F  V  C  L  V  D  F  P  F  F  E  L  Y  W  N  S  L  V  F  Q  I  H  P  Y  N  N  N  *  F  </first_frame>
            <second_frame>  V  Y  S  S  P  P  S  G  R  Q  K  Q  R  I  V  *  I  I  R  R  I  K  K  Q  S  C  C  W  K  Y  E  L  V  L  P  *  D  F  P  F  S  *  T  L  H  H  *  F  F  R :   T  K  S  T  M  L  G  V  L  R  R  K  V  A  S  A  S  :  G  L  G  K  S  M  Y  A  V  R  P  T  S  R  I  S  S  T  A  T  E  E  :  I  L  L  L  P  I  Q  C  G  H  A  R  Q  F  S  H  L  V  L  P   : G  C  S  V  N  M  R  P  D  R :   G  A  V  V  N  F  H  S  S  L  S  Q  Q  I  C  I  R  P  F  C  S  N  S   : G  D  L  V  D  A  V  V  P  Y  M  G  E  S  I  S  D  G  T  L  A  K  L  L  K   : N  P  G  D  K  V  E  V  D  E  P  I  A  Q  I  E  T  D  K  :  V  T  I  D  V  T  S  P  E  A  G  V  I  Q  K  :  F  V  A  K  E  G  D  T  V  E  P  G  F  K  V  A  I  I  S  K  S  G  E  G  V  E  S  V  D  H  V  A  P  S  E  K  P  S  E  K  E  A  L  K  P  T  S  P  I  Q  E  K  K  V  E  E  V  K  S  K  L  E  V  A  P  V  K  E  N  S  K  A  T  S  P  P  P  K  R  S  A  T  E  P  Q  L  P  P  K  E  R  E  R  R  :  V  P  M  T  R  L  R  K  R  V  A  T  R  L  K  D  S  Q  N  T  F  A  L  L  T  T  F  N  E  V  D  M :   T  N  L  M  K  L  R  S  E  Y  K  D  T  F  V  E  K  H  G  V  K  L  G  L  M  S  G  F  V  K  :  A  A  V  S  A  L  Q  N  Q  P  I  V  N  A  V  I  D  G  D  D  I  I  Y  R  D  Y  V  D  I  S  I  A  V  G  T  P  K  :  G  L  V  V  P  V  L  R  D  V  D  R  M  N  F  A  E  I  E  K  T  I  N  E  L  A  K  K  A  T  N  G  T  I  S  I  D  E  M  A  G  G  S  F  T  I  S  N  G  G  V  Y  G  S  L  L  S  T  P  I  I  N  P  P  Q  :  S  A  I  L  G  M  H  S  I  V  N  R  P  M  V  V  G  G  V  I  V  S  R  P  M  M  Y  I  A  L  T  Y  D  H  R  L  I  D  G  R  E  A  V  Y  F  L  R  R  I  K  D  V  V  E  D  P  R  R  L  L  L  D  V  *  R  F  K  I  Y  N  H  P  W  L  L  I  *  L  F  V  V  Y  P  S  V  C  A  S  *  K  P  E  N  K  R  L  S  K  L  L  R  P  L  T  L  L  L  S  L  I  V  *  S  S  C  S  K  S  T  C  K  *  R  Y  V  T  N  N  S  I  F  I  L  F  H  N  S  C  M  F  F  S  *  C  P  R  I  A  *  I  H  F  T  S  L  M  S  L  C  I  L  Y  V  L  L  I  F  L  F  S  N  C  I  G  I  H  L  C  F  R  S  I  H  T  T  I  I  S  F </second_frame>
            <third_frame>   F  I  P  H  L  L  L  E  G  K  S  K  E  *  S  E  *  *  E  E  *  K  S  K  A  A  V  G  S  T  N  L  F  S  L  K  T  F  L  S  P  K  P  Y  T  I  D  S  L   : G  P  N  L  R  C  W  A  F  *  G  A  R  L  L  L  L  R :   V  *  G  N  L  C  M  Q  F  D  L  P  L  E  F  H  L  L  Q  L  K  R :   Y  Y  F  F  L  Y  N  A  V  M  L  G  N  S  V  I  L  F  Y  L  :  D  A  Q  *  T  *  G  Q  I   : G  E  L  W  L  I  F  T  Q  V  Y  H  N  R  F  A  S  G  L  F  V  Q  I  V  :  V  I  W  S  M  L  L  F  L  I  W  A  N  P  *  A  M  A  H  W  L  N  C  *  R  :  I  L  V  T  K  *  K  L  M  S  Q  L  L  R  L  K  Q  T  R :   *  Q  L  M  *  P  V  L  R  P  V  *  S  K  S :   L  *  L  R  K  E  I  L  W  N  Q  A  S  R  L  L  S  F  Q  N  P  V  R  V  W  R  V  *  I  M  L  L  L  L  R  S  H  L  K  K  K  L  *  S  Q  L  L  P  F  K  R  K  R  W  K  R  *  N  P  N  L  R  W  L  L  *  R  R  I  L  R  Q  L  H  R  P  L  N  G  L  L  Q  N  P  N  F  H  P  K  N  G  K  D  E :   F  P  *  L  G  S  G  K  E  L  P  L  D  *  K  I  L  R  T  P  S  H  C  *  L  H  S  M  K  L  I   : *  Q  I  *  *  S  S  D  L  S  T  K  T  R  L  L  K  S  T  V  *  S  *  D  S  C  P  D  L  *  R :   Q  L  L  V  H  S  R  I  N  L  *  *  M  Q  L  L  M  V  M  T  S  Y  I  G  T  M  *  T  S  V  *  L  L  A  P  Q  R :   V  W  L  Y  L  F  S  A  T  L  T  G  *  I  L  L  R  *  K  R  Q  *  T  S  L  L  R  R  Q  L  M  E  P  S  L  L  M  K  W  L  E  D  R  L  Q  Y  P  M  V  V  C  M  E  V  F  *  V  L  P  S  *  I  L  L  S :   L  L  S  W  E  C  I  Q  *  *  I  A  Q  W  L  L  E  A  S  L  S  Q  D  Q  *  C  T  L  R  *  H  M  I  I  G  *  L  M  E  E  R  Q  F  T  F  *  E  G  L  K  M  W  *  K  I  H  A  A  Y  S  L  M  F  E  D  L  R  Y  T  T  I  R  G  F  *  F  D  F  S  W  Y  T  Q  V  F  A  Q  A  E  N  Q  K  I  N  V  C  Q  S  Y  *  G  L  *  H  C  F  C  P  *  L  F  N  Q  V  A  A  N  L  H  A  N  R  D  M  *  Q  T  I  Q  Y  S  S  F  S  T  T  L  V  C  F  S  H  D  A  Q  G  L  L  E  Y  I  L  P  A  *  C  L  Y  A  F  C  M  S  C  *  F  S  F  F  R  T  V  L  E  F  T  C  V  S  D  P  S  I  Q  Q  *  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47450" stop="47443"/>
                    <exon start="47367" stop="47316"/>
                    <exon start="47222" stop="47157"/>
                    <exon start="46090" stop="46030"/>
                    <exon start="45948" stop="45921"/>
                    <exon start="44970" stop="44900"/>
                    <exon start="43988" stop="43914"/>
                    <exon start="43840" stop="43785"/>
                    <exon start="43703" stop="43659"/>
                    <exon start="43550" stop="43269"/>
                    <exon start="43166" stop="43072"/>
                    <exon start="42155" stop="42065"/>
                    <exon start="41979" stop="41869"/>
                    <exon start="41709" stop="41515"/>
                    <exon start="41421" stop="41230"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1425</number_coding_nucleotides>
                  <number_encoded_amino_acids>475</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFRTKSTMLGVLRRKVASASGLGKSMYAVRPTSRISSTATEEILLLPIQCGHARQFSHLVLPGCSVNMRPDRGAVVNFHSSLSQQICIRPFCSNSGDLVDAVVPYMGESISDGTLAKLLKNPGDKVEVDEPIAQIETDKVTIDVTSPEAGVIQKFVAKEGDTVEPGFKVAIISKSGEGVESVDHVAPSEKPSEKEALKPTSPIQEKKVEEVKSKLEVAPVKENSKATSPPPKRSATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSEYKDTFVEKHGVKLGLMSGFVKAAVSALQNQPIVNAVIDGDDIIYRDYVDISIAVGTPKGLVVPVLRDVDRMNFAEIEKTINELAKKATNGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGVIVSRPMMYIALTYDHRLIDGREAVYFLRRIKDVVEDPRRLLLDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41140" stop="40859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFVKVIEAFDIAFVPDCLIKLQQIYMQIEICNKQFNIHPFPQLLYVFLMMPKDCLNTFYQLDVFMHFVCLVDFPFFELYWNSLVFQIHPYNNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47501" e_stop="47370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="47501" e_stop="47370" e_length="132"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47501" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAGGTCAAAAACTTCTACTCGATTTTCATGCAAGAGATCTACTTTATCGCCACCATCTAAACTTTTTTTTTTTAAC</gDNA_template>
            <first_frame> E  L  V  L  P  *  D  F  P  F  S  *  T  L  H  H  *  F  F  R  S  K  T  S  T  R  F  S  C  K  R  S  T  L  S  P  P  S  K  L  F  F  F  N </first_frame>
            <second_frame>  N  L  F  S  L  K  T  F  L  S  P  K  P  Y  T  I  D  S  L  G  Q  K  L  L  L  D  F  H  A  R  D  L  L  Y  R  H  H  L  N  F  F  F  L   </second_frame>
            <third_frame>   T  C  S  P  L  R  L  S  F  L  L  N  P  T  P  L  I  L  *  V  K  N  F  Y  S  I  F  M  Q  E  I  Y  F  I  A  T  I  *  T  F  F  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0030P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47512" e_stop="47443"/>
            <exon e_start="47367" e_stop="47316"/>
            <exon e_start="47222" e_stop="47157"/>
            <exon e_start="46090" e_stop="46030"/>
            <exon e_start="45948" e_stop="45921"/>
            <exon e_start="44970" e_stop="44900"/>
            <exon e_start="43988" e_stop="43785"/>
            <exon e_start="43703" e_stop="43659"/>
            <exon e_start="43550" e_stop="43516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.869" acc_prob="0.964" e_score="0.986"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.850" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.388" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.292" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="47512" e_stop="47443" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.869" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47442" i_stop="47368" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47367" e_stop="47316" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47315" i_stop="47223" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47222" e_stop="47157" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.850">
            <gDNA_intron_boundary i_start="47156" i_stop="46091" i_length="1066"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46090" e_stop="46030" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46029" i_stop="45949" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45948" e_stop="45921" e_length="28"/>
          </exon>
          <intron i_serial="5" don_prob="0.388" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45920" i_stop="44971" i_length="950"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44970" e_stop="44900" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.872" acc_prob="0.292">
            <gDNA_intron_boundary i_start="44899" i_stop="43989" i_length="911"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43988" e_stop="43785" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="43784" i_stop="43704" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43703" e_stop="43659" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43658" i_stop="43551" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43550" e_stop="43516" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47512" stop="47443"/>
              <exon start="47367" stop="47316"/>
              <exon start="47222" stop="47157"/>
              <exon start="46090" stop="46030"/>
              <exon start="45948" stop="45921"/>
              <exon start="44970" stop="44900"/>
              <exon start="43988" stop="43785"/>
              <exon start="43703" stop="43659"/>
              <exon start="43550" stop="43516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGGAAGTACGAACTTGTTCTCCCTTAAGACTTTCCTTTCTCCTAAACCCTACACCATTGATTCTTTAG : GACCAAATCTACGATGCTGGGCGTTTTAAGGCGCAAGGTTGCTTCTGCTTCG : GGTTTAGGGAAATCTATGTATGCAGTTCGACCTACCTCTAGAATTTCATCTACTGCAACTGAAGAG : ATATTACTTCTTCCTATACAATGCGGTCATGCTCGGCAATTCAGTCATCTTGTTTTACCTG : GATGCTCAGTGAACATGAGGCCAGATAG : GGGAGCTGTGGTTAATTTTCACTCAAGTCTATCACAACAGATTTGCATCAGGCCTTTTTGTTCAAATAGTG : GTGATCTGGTCGATGCTGTTGTTCCTTATATGGGCGAATCCATAAGCGATGGCACACTGGCTAAATTGCTGAAGAGTATGTTTTTTGTTAGTGTCCACATATTTTTTCTTTATAACTTGGTTATTTTAATCTCATTCTTTTTGTGCAGATCCTGGTGACAAAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGACAAG : GTAACAATTGATGTAACCAGTCCTGAGGCCGGTGTAATCCAAAAG : TTTGTAGCTAAGGAAGGAGATACTGTGGAACCAGG</gDNA_template>
            <first_frame> V  G  S  T  N  L  F  S  L  K  T  F  L  S  P  K  P  Y  T  I  D  S  L   : G  P  N  L  R  C  W  A  F  *  G  A  R  L  L  L  L  R :   V  *  G  N  L  C  M  Q  F  D  L  P  L  E  F  H  L  L  Q  L  K  R :   Y  Y  F  F  L  Y  N  A  V  M  L  G  N  S  V  I  L  F  Y  L  :  D  A  Q  *  T  *  G  Q  I   : G  E  L  W  L  I  F  T  Q  V  Y  H  N  R  F  A  S  G  L  F  V  Q  I  V  :  V  I  W  S  M  L  L  F  L  I  W  A  N  P  *  A  M  A  H  W  L  N  C  *  R  V  C  F  L  L  V  S  T  Y  F  F  F  I  T  W  L  F  *  S  H  S  F  C  A  D  P  G  D  K  V  E  V  D  E  P  I  A  Q  I  E  T  D  K  :  V  T  I  D  V  T  S  P  E  A  G  V  I  Q  K  :  F  V  A  K  E  G  D  T  V  E  P   </first_frame>
            <second_frame>  L  E  V  R  T  C  S  P  L  R  L  S  F  L  L  N  P  T  P  L  I  L  *  :  D  Q  I  Y  D  A  G  R  F  K  A  Q  G  C  F  C  F   : G  F  R  E  I  Y  V  C  S  S  T  Y  L  *  N  F  I  Y  C  N  *  R   : D  I  T  S  S  Y  T  M  R  S  C  S  A  I  Q  S  S  C  F  T  W :   M  L  S  E  H  E  A  R  *  :  G  S  C  G  *  F  S  L  K  S  I  T  T  D  L  H  Q  A  F  L  F  K  *  W :   *  S  G  R  C  C  C  S  L  Y  G  R  I  H  K  R  W  H  T  G  *  I  A  E  E  Y  V  F  C  *  C  P  H  I  F  S  L  *  L  G  Y  F  N  L  I  L  F  V  Q  I  L  V  T  K  *  K  L  M  S  Q  L  L  R  L  K  Q  T  R :   *  Q  L  M  *  P  V  L  R  P  V  *  S  K  S :   L  *  L  R  K  E  I  L  W  N  Q  </second_frame>
            <third_frame>   W  K  Y  E  L  V  L  P  *  D  F  P  F  S  *  T  L  H  H  *  F  F  R :   T  K  S  T  M  L  G  V  L  R  R  K  V  A  S  A  S  :  G  L  G  K  S  M  Y  A  V  R  P  T  S  R  I  S  S  T  A  T  E  E  :  I  L  L  L  P  I  Q  C  G  H  A  R  Q  F  S  H  L  V  L  P   : G  C  S  V  N  M  R  P  D  R :   G  A  V  V  N  F  H  S  S  L  S  Q  Q  I  C  I  R  P  F  C  S  N  S   : G  D  L  V  D  A  V  V  P  Y  M  G  E  S  I  S  D  G  T  L  A  K  L  L  K  S  M  F  F  V  S  V  H  I  F  F  L  Y  N  L  V  I  L  I  S  F  F  L  C  R  S  W  *  Q  S  R  S  *  *  A  N  C  S  D  *  N  R  Q   : G  N  N  *  C  N  Q  S  *  G  R  C  N  P  K   : V  C  S  *  G  R  R  Y  C  G  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47450" stop="47443"/>
                    <exon start="47367" stop="47316"/>
                    <exon start="47222" stop="47157"/>
                    <exon start="46090" stop="46030"/>
                    <exon start="45948" stop="45921"/>
                    <exon start="44970" stop="44900"/>
                    <exon start="43988" stop="43831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFRTKSTMLGVLRRKVASASGLGKSMYAVRPTSRISSTATEEILLLPIQCGHARQFSHLVLPGCSVNMRPDRGAVVNFHSSLSQQICIRPFCSNSGDLVDAVVPYMGESISDGTLAKLLKSMFFVSVHIFFLYNLVILISFFLCRSW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="53901" PGL_stop="52659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53901" e_stop="52659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="53901" e_stop="52659" e_length="1243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53901" stop="52659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATTACAAATTAAAGTAGGGTATATTTCTCCAGTGTGTCGTCTGTAATCAATGGCTTCTTCACTCTCTTTCACTTGTCATGTCGTCAACTTTCCCATTTGTGATCCTAAACTAACCAATAGAAACCCTAGTTTCCGATCCCTGCAACTTCCCCTTCGTTCAATTCAGTGTGGTATTCGTGAACTACGAGGAAGAATCGACACAATCAACAAAACCCAAAAAGTTACAGAAGCAATGAAACTAGTCGCAGCCGCTAAGATTCGTCGAGCACAAGAAGCAGTCATCAGTACTCGACCCTTTGCTGAAACCCTTGTTGATATGTTGTACAACATCACCCAACAGCTTCAGTTTGAAGAGGTAGATATACCGTTGACAGAAATAAGACCGGTAAAGAAAGTTGGCCTTGTTGTTATTGGAGGTGAAAGAGGTCTTTGTGGTGGTTTTAACAATGGGATTTTTAAGAAAGCAGAGAGCCGGATGGCGGAATTGACGAGTCTTGGAATTGGGTATACTTTGATTAGTGTTGGTAAGAAGAGTAATGCTTATTTTCGGAATGTTGATAGATTTGTTGTTGATAGATTTGAGAGTTTTCCGACTGCTAAAGAGGCTCAGGTTATAGCTGATGATGTTTTTTCTTTGTTTATTAGTGAACAAGTTGATAAAGTAGAGCTTTTGTACACTAAATTTGTTTCGTTGATTAAATCTGATCCGGTGATTCATACTTTGCTCCCATTAAGAGGAGAGGAGTTTTTTGATGAAGATGAGTTTTTTAGGTTGACTAGTAAGGAAGGTAAACTGAGTGTGGTGAGGGATTTGAGGGTGAAAAAGGGGGAATTTTTGCGTAATTTAGAGTATGAGCAAGATCCTGCTCAGATTCTTGATGCATTGATGCCATTATATTTGAATAGCCAGATTTTAAGGGCACTTCAAGAGTCATTTGCAAGTGAGGTTGCAGCTAGGATGAATGCAATGACTAGTGCAACGGATAATGCTGTTGAGTTGAGGAGGAACCTTTCTATTGCTTATAATCGGGAAAGGCAGGCGAAGATCACAGGTGAGATATTGGAAATTGTTGCTGGAGCAGATGCACTAATTACATAGATGCTGAAATTTCTGTAGGATGTTTAAGAAAACCATTGCTTTAAGTTGATAATCCCTTGTTCCAATCTGTCTTAAAGGGAGAGATCATCTCTTTCTATATGTGTGTATGTATGAATAAAAAAATTTATGATTTTTTTTCCC</gDNA_template>
            <first_frame> L  I  T  N  *  S  R  V  Y  F  S  S  V  S  S  V  I  N  G  F  F  T  L  F  H  L  S  C  R  Q  L  S  H  L  *  S  *  T  N  Q  *  K  P  *  F  P  I  P  A  T  S  P  S  F  N  S  V  W  Y  S  *  T  T  R  K  N  R  H  N  Q  Q  N  P  K  S  Y  R  S  N  E  T  S  R  S  R  *  D  S  S  S  T  R  S  S  H  Q  Y  S  T  L  C  *  N  P  C  *  Y  V  V  Q  H  H  P  T  A  S  V  *  R  G  R  Y  T  V  D  R  N  K  T  G  K  E  S  W  P  C  C  Y  W  R  *  K  R  S  L  W  W  F  *  Q  W  D  F  *  E  S  R  E  P  D  G  G  I  D  E  S  W  N  W  V  Y  F  D  *  C  W  *  E  E  *  C  L  F  S  E  C  *  *  I  C  C  *  *  I  *  E  F  S  D  C  *  R  G  S  G  Y  S  *  *  C  F  F  F  V  Y  *  *  T  S  *  *  S  R  A  F  V  H  *  I  C  F  V  D  *  I  *  S  G  D  S  Y  F  A  P  I  K  R  R  G  V  F  *  *  R  *  V  F  *  V  D  *  *  G  R  *  T  E  C  G  E  G  F  E  G  E  K  G  G  I  F  A  *  F  R  V  *  A  R  S  C  S  D  S  *  C  I  D  A  I  I  F  E  *  P  D  F  K  G  T  S  R  V  I  C  K  *  G  C  S  *  D  E  C  N  D  *  C  N  G  *  C  C  *  V  E  E  E  P  F  Y  C  L  *  S  G  K  A  G  E  D  H  R  *  D  I  G  N  C  C  W  S  R  C  T  N  Y  I  D  A  E  I  S  V  G  C  L  R  K  P  L  L  *  V  D  N  P  L  F  Q  S  V  L  K  G  E  I  I  S  F  Y  M  C  V  C  M  N  K  K  I  Y  D  F  F  S  </first_frame>
            <second_frame>  *  L  Q  I  K  V  G  Y  I  S  P  V  C  R  L  *  S  M  A  S  S  L  S  F  T  C  H  V  V  N  F  P  I  C  D  P  K  L  T  N  R  N  P  S  F  R  S  L  Q  L  P  L  R  S  I  Q  C  G  I  R  E  L  R  G  R  I  D  T  I  N  K  T  Q  K  V  T  E  A  M  K  L  V  A  A  A  K  I  R  R  A  Q  E  A  V  I  S  T  R  P  F  A  E  T  L  V  D  M  L  Y  N  I  T  Q  Q  L  Q  F  E  E  V  D  I  P  L  T  E  I  R  P  V  K  K  V  G  L  V  V  I  G  G  E  R  G  L  C  G  G  F  N  N  G  I  F  K  K  A  E  S  R  M  A  E  L  T  S  L  G  I  G  Y  T  L  I  S  V  G  K  K  S  N  A  Y  F  R  N  V  D  R  F  V  V  D  R  F  E  S  F  P  T  A  K  E  A  Q  V  I  A  D  D  V  F  S  L  F  I  S  E  Q  V  D  K  V  E  L  L  Y  T  K  F  V  S  L  I  K  S  D  P  V  I  H  T  L  L  P  L  R  G  E  E  F  F  D  E  D  E  F  F  R  L  T  S  K  E  G  K  L  S  V  V  R  D  L  R  V  K  K  G  E  F  L  R  N  L  E  Y  E  Q  D  P  A  Q  I  L  D  A  L  M  P  L  Y  L  N  S  Q  I  L  R  A  L  Q  E  S  F  A  S  E  V  A  A  R  M  N  A  M  T  S  A  T  D  N  A  V  E  L  R  R  N  L  S  I  A  Y  N  R  E  R  Q  A  K  I  T  G  E  I  L  E  I  V  A  G  A  D  A  L  I  T  *  M  L  K  F  L  *  D  V  *  E  N  H  C  F  K  L  I  I  P  C  S  N  L  S  *  R  E  R  S  S  L  S  I  C  V  Y  V  *  I  K  K  F  M  I  F  F  P </second_frame>
            <third_frame>   N  Y  K  L  K  *  G  I  F  L  Q  C  V  V  C  N  Q  W  L  L  H  S  L  S  L  V  M  S  S  T  F  P  F  V  I  L  N  *  P  I  E  T  L  V  S  D  P  C  N  F  P  F  V  Q  F  S  V  V  F  V  N  Y  E  E  E  S  T  Q  S  T  K  P  K  K  L  Q  K  Q  *  N  *  S  Q  P  L  R  F  V  E  H  K  K  Q  S  S  V  L  D  P  L  L  K  P  L  L  I  C  C  T  T  S  P  N  S  F  S  L  K  R  *  I  Y  R  *  Q  K  *  D  R  *  R  K  L  A  L  L  L  L  E  V  K  E  V  F  V  V  V  L  T  M  G  F  L  R  K  Q  R  A  G  W  R  N  *  R  V  L  E  L  G  I  L  *  L  V  L  V  R  R  V  M  L  I  F  G  M  L  I  D  L  L  L  I  D  L  R  V  F  R  L  L  K  R  L  R  L  *  L  M  M  F  F  L  C  L  L  V  N  K  L  I  K  *  S  F  C  T  L  N  L  F  R  *  L  N  L  I  R  *  F  I  L  C  S  H  *  E  E  R  S  F  L  M  K  M  S  F  L  G  *  L  V  R  K  V  N  *  V  W  *  G  I  *  G  *  K  R  G  N  F  C  V  I  *  S  M  S  K  I  L  L  R  F  L  M  H  *  C  H  Y  I  *  I  A  R  F  *  G  H  F  K  S  H  L  Q  V  R  L  Q  L  G  *  M  Q  *  L  V  Q  R  I  M  L  L  S  *  G  G  T  F  L  L  L  I  I  G  K  G  R  R  R  S  Q  V  R  Y  W  K  L  L  L  E  Q  M  H  *  L  H  R  C  *  N  F  C  R  M  F  K  K  T  I  A  L  S  *  *  S  L  V  P  I  C  L  K  G  R  D  H  L  F  L  Y  V  C  M  Y  E  *  K  N  L  *  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53852" stop="52800"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMASSLSFTCHVVNFPICDPKLTNRNPSFRSLQLPLRSIQCGIRELRGRIDTINKTQKVTEAMKLVAAAKIRRAQEAVISTRPFAETLVDMLYNITQQLQFEEVDIPLTEIRPVKKVGLVVIGGERGLCGGFNNGIFKKAESRMAELTSLGIGYTLISVGKKSNAYFRNVDRFVVDRFESFPTAKEAQVIADDVFSLFISEQVDKVELLYTKFVSLIKSDPVIHTLLPLRGEEFFDEDEFFRLTSKEGKLSVVRDLRVKKGEFLRNLEYEQDPAQILDALMPLYLNSQILRALQESFASEVAARMNAMTSATDNAVELRRNLSIAYNRERQAKITGEILEIVAGADALIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="54551" PGL_stop="60420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54551" e_stop="54899"/>
            <exon e_start="54989" e_stop="55036"/>
            <exon e_start="55108" e_stop="55233"/>
            <exon e_start="55589" e_stop="55921"/>
            <exon e_start="56146" e_stop="56245"/>
            <exon e_start="56731" e_stop="56776"/>
            <exon e_start="57526" e_stop="57619"/>
            <exon e_start="57757" e_stop="57828"/>
            <exon e_start="58007" e_stop="58065"/>
            <exon e_start="59145" e_stop="59213"/>
            <exon e_start="59292" e_stop="59343"/>
            <exon e_start="60024" e_stop="60101"/>
            <exon e_start="60196" e_stop="60420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="0.997"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.528" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.321" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="54551" e_stop="54899" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="54900" i_stop="54988" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54989" e_stop="55036" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55037" i_stop="55107" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55108" e_stop="55233" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55234" i_stop="55588" i_length="355"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55589" e_stop="55921" e_length="333"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="55922" i_stop="56145" i_length="224"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56146" e_stop="56245" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.922" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56246" i_stop="56730" i_length="485"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56731" e_stop="56776" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.794">
            <gDNA_intron_boundary i_start="56777" i_stop="57525" i_length="749"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57526" e_stop="57619" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.810">
            <gDNA_intron_boundary i_start="57620" i_stop="57756" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="57757" e_stop="57828" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.528" acc_prob="0.995">
            <gDNA_intron_boundary i_start="57829" i_stop="58006" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58007" e_stop="58065" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58066" i_stop="59144" i_length="1079"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="59145" e_stop="59213" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="59214" i_stop="59291" i_length="78"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="59292" e_stop="59343" e_length="52"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="59344" i_stop="60023" i_length="680"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="60024" e_stop="60101" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.321">
            <gDNA_intron_boundary i_start="60102" i_stop="60195" i_length="94"/>
          </intron>
          <exon e_serial="13" e_score="0.991">
            <gDNA_exon_boundary e_start="60196" e_stop="60420" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54551" stop="54899"/>
              <exon start="54989" stop="55036"/>
              <exon start="55108" stop="55233"/>
              <exon start="55589" stop="55921"/>
              <exon start="56146" stop="56245"/>
              <exon start="56731" stop="56776"/>
              <exon start="57526" stop="57619"/>
              <exon start="57757" stop="57828"/>
              <exon start="58007" stop="58065"/>
              <exon start="59145" stop="59213"/>
              <exon start="59292" stop="59343"/>
              <exon start="60024" stop="60101"/>
              <exon start="60196" stop="60420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTTGAGTATAACGGAAATATTTATTAGTAATACTATATTAATCCTAAAAATTAAAGAAGAAATAAAAAAATTATCCCTACCATTAATTTTTAATTTTGTTATGTTAGAAAAAACCAAAAATACTTTACTTTTAACAAAGTAAAAAACTCAAATAATATTTGAAGAATCAAAATCCAAGTCCAAAAAATTCAGTGATTTGAATTGAATCGCCGGAGAAATGGGAAGAGGTTTGGGTTCGCAAAACTTGCCGGCGGACGTCGCTCAGCTGATCGATCAGTTAGACCGCCATTGTTTAGCCCCTGATGGATCTCTCATCTCCAAATCCGCTCACTACGATCTCCAACTT : GCGAGAGAAGAGATGTCAAAGGAGAGACAACGATACTTGGAATCTTTG : GCAATATACATTGAAGCAACTGCGATGGTAGAGGATTACCAGCAGGCCATTTCTGTGGCTAATCTTGGTGGTATGAGAGATGTCCAGGGTTTATACTCTCAATTGGGCTTGAAAAACCCTCCTCAG : GTTTATGAGGCTCTTGAGCATAGGATGGTTGTTGCAGAAGCAGCACAGAGATTGAGGCTTCCTCTTATCTCCAAAGACGGTGAGATTCACGAGGAGGAAATTGAAAAGTGGAGTACAATGTCAAGAAGTTCTTTTGATAGCACAAGCACCAGCATTACATTAAGCTCGAGCTCAAACTCAGCTTATCAAACCAATGCATCTGCAATTGGAGCTGTTCCTACTATTAGTACAACTGATTCAACAGAACCAGATGTTGGTGGTGTTCCCAATCGGTTCCTTGGAATTACACCTGCATATTTATGGCAAACTCAACTACATCAGATGTCATCAGTG : GACGTGGCAGAATACCAGAGATTACTTTCACGGGAGATTGGTGGCCGGTTAGATGCTAAATGTGATAAGTTAGCTGATGCAGTTGCTATTGATGACATTG : ATATATCTGCTGCCAGTCAAAATTCAGCTGCCAGACTTCCAGAGAG : GGTGAAGTTGATCACTGAGGAGATTGAAAGAGAAGAAGAAGCATGGCGCGAGGATTTATATTCATCTAACAGAAAATTTGCAGAATACTATAAT : GTCTTGGAGCAGATCCTTGGTGTTCTTATTAAGCTTGTCAAAGATATAAAGTTGGACCATCAACATAAATAT : GATGAACTACAAAAGACGTGGCTGTGCAAAAGATGTGAGACCATGAGGGCAAAATTAAG : AGTTCTGGAACATGTTCTCCTACTTGATACTTATACCCCAGAAACTATTCCCGCCCTTCACAAAATAAG : GAAGTATTTGATTGAAGCAACAGAAGAAGCATCACTTGCATATGAGAAAGCG : GCGTCCCGTCTTCGTGAGTATCAAGGCGTTGATCCTCATTTTGATGAAATTGCTAGGCAGTACCATGACATTGTAAAG : AAATTGGAGAGCATGCAGTGGACCATTAACCAAGTTGAAATGGACTTGAATCCTTTGCCTGCTCACTCCAGCACCTAAGCCATCTCTCTTCATATTCTTCACAAAGGTTCATGTAATATCCATATGTAGTTATGGTTGTTTCTAATTATTTATTTTTTTCAACACACTACTTTAAACAACCTCATAATCGCTGCCATTTATACAATCTATTTTGAGCTTCAGAAC</gDNA_template>
            <first_frame> M  F  E  Y  N  G  N  I  Y  *  *  Y  Y  I  N  P  K  N  *  R  R  N  K  K  I  I  P  T  I  N  F  *  F  C  Y  V  R  K  N  Q  K  Y  F  T  F  N  K  V  K  N  S  N  N  I  *  R  I  K  I  Q  V  Q  K  I  Q  *  F  E  L  N  R  R  R  N  G  K  R  F  G  F  A  K  L  A  G  G  R  R  S  A  D  R  S  V  R  P  P  L  F  S  P  *  W  I  S  H  L  Q  I  R  S  L  R  S  P  T   : C  E  R  R  D  V  K  G  E  T  T  I  L  G  I  F   : G  N  I  H  *  S  N  C  D  G  R  G  L  P  A  G  H  F  C  G  *  S  W  W  Y  E  R  C  P  G  F  I  L  S  I  G  L  E  K  P  S  S   : G  L  *  G  S  *  A  *  D  G  C  C  R  S  S  T  E  I  E  A  S  S  Y  L  Q  R  R  *  D  S  R  G  G  N  *  K  V  E  Y  N  V  K  K  F  F  *  *  H  K  H  Q  H  Y  I  K  L  E  L  K  L  S  L  S  N  Q  C  I  C  N  W  S  C  S  Y  Y  *  Y  N  *  F  N  R  T  R  C  W  W  C  S  Q  S  V  P  W  N  Y  T  C  I  F  M  A  N  S  T  T  S  D  V  I  S   : G  R  G  R  I  P  E  I  T  F  T  G  D  W  W  P  V  R  C  *  M  *  *  V  S  *  C  S  C  Y  *  *  H  * :   Y  I  C  C  Q  S  K  F  S  C  Q  T  S  R  E  :  G  E  V  D  H  *  G  D  *  K  R  R  R  S  M  A  R  G  F  I  F  I  *  Q  K  I  C  R  I  L  *   : C  L  G  A  D  P  W  C  S  Y  *  A  C  Q  R  Y  K  V  G  P  S  T  *  I   : *  *  T  T  K  D  V  A  V  Q  K  M  *  D  H  E  G  K  I  K  :  S  S  G  T  C  S  P  T  *  Y  L  Y  P  R  N  Y  S  R  P  S  Q  N  K  :  E  V  F  D  *  S  N  R  R  S  I  T  C  I  *  E  S   : G  V  P  S  S  *  V  S  R  R  *  S  S  F  *  *  N  C  *  A  V  P  *  H  C  K   : E  I  G  E  H  A  V  D  H  *  P  S  *  N  G  L  E  S  F  A  C  S  L  Q  H  L  S  H  L  S  S  Y  S  S  Q  R  F  M  *  Y  P  Y  V  V  M  V  V  S  N  Y  L  F  F  S  T  H  Y  F  K  Q  P  H  N  R  C  H  L  Y  N  L  F  *  A  S  E  </first_frame>
            <second_frame>  C  L  S  I  T  E  I  F  I  S  N  T  I  L  I  L  K  I  K  E  E  I  K  K  L  S  L  P  L  I  F  N  F  V  M  L  E  K  T  K  N  T  L  L  L  T  K  *  K  T  Q  I  I  F  E  E  S  K  S  K  S  K  K  F  S  D  L  N  *  I  A  G  E  M  G  R  G  L  G  S  Q  N  L  P  A  D  V  A  Q  L  I  D  Q  L  D  R  H  C  L  A  P  D  G  S  L  I  S  K  S  A  H  Y  D  L  Q  L  :  A  R  E  E  M  S  K  E  R  Q  R  Y  L  E  S  L  :  A  I  Y  I  E  A  T  A  M  V  E  D  Y  Q  Q  A  I  S  V  A  N  L  G  G  M  R  D  V  Q  G  L  Y  S  Q  L  G  L  K  N  P  P  Q  :  V  Y  E  A  L  E  H  R  M  V  V  A  E  A  A  Q  R  L  R  L  P  L  I  S  K  D  G  E  I  H  E  E  E  I  E  K  W  S  T  M  S  R  S  S  F  D  S  T  S  T  S  I  T  L  S  S  S  S  N  S  A  Y  Q  T  N  A  S  A  I  G  A  V  P  T  I  S  T  T  D  S  T  E  P  D  V  G  G  V  P  N  R  F  L  G  I  T  P  A  Y  L  W  Q  T  Q  L  H  Q  M  S  S  V  :  D  V  A  E  Y  Q  R  L  L  S  R  E  I  G  G  R  L  D  A  K  C  D  K  L  A  D  A  V  A  I  D  D  I   : D  I  S  A  A  S  Q  N  S  A  A  R  L  P  E  R :   V  K  L  I  T  E  E  I  E  R  E  E  E  A  W  R  E  D  L  Y  S  S  N  R  K  F  A  E  Y  Y  N  :  V  L  E  Q  I  L  G  V  L  I  K  L  V  K  D  I  K  L  D  H  Q  H  K  Y  :  D  E  L  Q  K  T  W  L  C  K  R  C  E  T  M  R  A  K  L  R :   V  L  E  H  V  L  L  L  D  T  Y  T  P  E  T  I  P  A  L  H  K  I  R :   K  Y  L  I  E  A  T  E  E  A  S  L  A  Y  E  K  A  :  A  S  R  L  R  E  Y  Q  G  V  D  P  H  F  D  E  I  A  R  Q  Y  H  D  I  V  K  :  K  L  E  S  M  Q  W  T  I  N  Q  V  E  M  D  L  N  P  L  P  A  H  S  S  T  *  A  I  S  L  H  I  L  H  K  G  S  C  N  I  H  M  *  L  W  L  F  L  I  I  Y  F  F  Q  H  T  T  L  N  N  L  I  I  A  A  I  Y  T  I  Y  F  E  L  Q  N </second_frame>
            <third_frame>   V  *  V  *  R  K  Y  L  L  V  I  L  Y  *  S  *  K  L  K  K  K  *  K  N  Y  P  Y  H  *  F  L  I  L  L  C  *  K  K  P  K  I  L  Y  F  *  Q  S  K  K  L  K  *  Y  L  K  N  Q  N  P  S  P  K  N  S  V  I  *  I  E  S  P  E  K  W  E  E  V  W  V  R  K  T  C  R  R  T  S  L  S  *  S  I  S  *  T  A  I  V  *  P  L  M  D  L  S  S  P  N  P  L  T  T  I  S  N  L :   R  E  K  R  C  Q  R  R  D  N  D  T  W  N  L  W :   Q  Y  T  L  K  Q  L  R  W  *  R  I  T  S  R  P  F  L  W  L  I  L  V  V  *  E  M  S  R  V  Y  T  L  N  W  A  *  K  T  L  L  R :   F  M  R  L  L  S  I  G  W  L  L  Q  K  Q  H  R  D  *  G  F  L  L  S  P  K  T  V  R  F  T  R  R  K  L  K  S  G  V  Q  C  Q  E  V  L  L  I  A  Q  A  P  A  L  H  *  A  R  A  Q  T  Q  L  I  K  P  M  H  L  Q  L  E  L  F  L  L  L  V  Q  L  I  Q  Q  N  Q  M  L  V  V  F  P  I  G  S  L  E  L  H  L  H  I  Y  G  K  L  N  Y  I  R  C  H  Q  W :   T  W  Q  N  T  R  D  Y  F  H  G  R  L  V  A  G  *  M  L  N  V  I  S  *  L  M  Q  L  L  L  M  T  L  :  I  Y  L  L  P  V  K  I  Q  L  P  D  F  Q  R   : G  *  S  *  S  L  R  R  L  K  E  K  K  K  H  G  A  R  I  Y  I  H  L  T  E  N  L  Q  N  T  I  M :   S  W  S  R  S  L  V  F  L  L  S  L  S  K  I  *  S  W  T  I  N  I  N  M :   M  N  Y  K  R  R  G  C  A  K  D  V  R  P  *  G  Q  N  *   : E  F  W  N  M  F  S  Y  L  I  L  I  P  Q  K  L  F  P  P  F  T  K  *   : G  S  I  *  L  K  Q  Q  K  K  H  H  L  H  M  R  K  R :   R  P  V  F  V  S  I  K  A  L  I  L  I  L  M  K  L  L  G  S  T  M  T  L  *  R :   N  W  R  A  C  S  G  P  L  T  K  L  K  W  T  *  I  L  C  L  L  T  P  A  P  K  P  S  L  F  I  F  F  T  K  V  H  V  I  S  I  C  S  Y  G  C  F  *  L  F  I  F  F  N  T  L  L  *  T  T  S  *  S  L  P  F  I  Q  S  I  L  S  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54759" stop="54899"/>
                    <exon start="54989" stop="55036"/>
                    <exon start="55108" stop="55233"/>
                    <exon start="55589" stop="55921"/>
                    <exon start="56146" stop="56245"/>
                    <exon start="56731" stop="56776"/>
                    <exon start="57526" stop="57619"/>
                    <exon start="57757" stop="57828"/>
                    <exon start="58007" stop="58065"/>
                    <exon start="59145" stop="59213"/>
                    <exon start="59292" stop="59343"/>
                    <exon start="60024" stop="60101"/>
                    <exon start="60196" stop="60273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1293</number_coding_nucleotides>
                  <number_encoded_amino_acids>431</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAGEMGRGLGSQNLPADVAQLIDQLDRHCLAPDGSLISKSAHYDLQLAREEMSKERQRYLESLAIYIEATAMVEDYQQAISVANLGGMRDVQGLYSQLGLKNPPQVYEALEHRMVVAEAAQRLRLPLISKDGEIHEEEIEKWSTMSRSSFDSTSTSITLSSSSNSAYQTNASAIGAVPTISTTDSTEPDVGGVPNRFLGITPAYLWQTQLHQMSSVDVAEYQRLLSREIGGRLDAKCDKLADAVAIDDIDISAASQNSAARLPERVKLITEEIEREEEAWREDLYSSNRKFAEYYNVLEQILGVLIKLVKDIKLDHQHKYDELQKTWLCKRCETMRAKLRVLEHVLLLDTYTPETIPALHKIRKYLIEATEEASLAYEKAASRLREYQGVDPHFDEIARQYHDIVKKLESMQWTINQVEMDLNPLPAHSST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56212" PGL_stop="55759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56212" e_stop="55759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="56212" e_stop="55759" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56212" stop="55759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCACATTTAGCATCTAACCGGCCACCAATCTCCCGTGAAAGTAATCTCTGGTATTCTGCCACGTCCTACAATAGCAGACATATAAGCATCTATGGGCGTGTAGAACTAACACTTGATAACCAGATGAATAGCGATTCCACGTTTGTAGGTAACAAGCAATCAAAGCATCGATAAATGTACACAAATAAAAGACAACTACAACACTTTCATTGAAGATTAATTGGAAAACAGAAAAGATTTCCCCACAAGACCATGAGGTTATCACGTCAATCAAATAGGTATATTATACCACTGATGACATCTGATGTAGTTGAGTTTGCCATAAATATGCAGGTGTAATTCCAAGGAACCGATTGGGAACACCACCAACATCTGGTTCTGTTGAATCAGTTGTACTAATAGTAGGAACAGCTCCAATTGCAGATGCATTGGTTTGATAAGCTGAGTTTGAG</gDNA_template>
            <first_frame> Y  H  I  *  H  L  T  G  H  Q  S  P  V  K  V  I  S  G  I  L  P  R  P  T  I  A  D  I  *  A  S  M  G  V  *  N  *  H  L  I  T  R  *  I  A  I  P  R  L  *  V  T  S  N  Q  S  I  D  K  C  T  Q  I  K  D  N  Y  N  T  F  I  E  D  *  L  E  N  R  K  D  F  P  T  R  P  *  G  Y  H  V  N  Q  I  G  I  L  Y  H  *  *  H  L  M  *  L  S  L  P  *  I  C  R  C  N  S  K  E  P  I  G  N  T  T  N  I  W  F  C  *  I  S  C  T  N  S  R  N  S  S  N  C  R  C  I  G  L  I  S  *  V  *  </first_frame>
            <second_frame>  I  T  F  S  I  *  P  A  T  N  L  P  *  K  *  S  L  V  F  C  H  V  L  Q  *  Q  T  Y  K  H  L  W  A  C  R  T  N  T  *  *  P  D  E  *  R  F  H  V  C  R  *  Q  A  I  K  A  S  I  N  V  H  K  *  K  T  T  T  T  L  S  L  K  I  N  W  K  T  E  K  I  S  P  Q  D  H  E  V  I  T  S  I  K  *  V  Y  Y  T  T  D  D  I  *  C  S  *  V  C  H  K  Y  A  G  V  I  P  R  N  R  L  G  T  P  P  T  S  G  S  V  E  S  V  V  L  I  V  G  T  A  P  I  A  D  A  L  V  *  *  A  E  F  E </second_frame>
            <third_frame>   S  H  L  A  S  N  R  P  P  I  S  R  E  S  N  L  W  Y  S  A  T  S  Y  N  S  R  H  I  S  I  Y  G  R  V  E  L  T  L  D  N  Q  M  N  S  D  S  T  F  V  G  N  K  Q  S  K  H  R  *  M  Y  T  N  K  R  Q  L  Q  H  F  H  *  R  L  I  G  K  Q  K  R  F  P  H  K  T  M  R  L  S  R  Q  S  N  R  Y  I  I  P  L  M  T  S  D  V  V  E  F  A  I  N  M  Q  V  *  F  Q  G  T  D  W  E  H  H  Q  H  L  V  L  L  N  Q  L  Y  *  *  *  E  Q  L  Q  L  Q  M  H  W  F  D  K  L  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0030P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62551" PGL_stop="61019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62551" e_stop="62415"/>
            <exon e_start="62324" e_stop="61926"/>
            <exon e_start="61840" e_stop="61713"/>
            <exon e_start="61662" e_stop="61543"/>
            <exon e_start="61464" e_stop="61368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.983" e_score="0.917"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62551" e_stop="62415" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="62414" i_stop="62325" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62324" e_stop="61926" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61925" i_stop="61841" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61840" e_stop="61713" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61712" i_stop="61663" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="61662" e_stop="61543" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61542" i_stop="61465" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61464" e_stop="61368" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62551" stop="62415"/>
              <exon start="62324" stop="61926"/>
              <exon start="61840" stop="61713"/>
              <exon start="61662" stop="61543"/>
              <exon start="61464" stop="61368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGATGCCATATTAAAAGAAGACATTGACTTTGAAAGTCAACCTTGGCCCTCTATCACAACTAGTGCCAAGGACCTGGTCCGAAAGATGCTCAATAAAGACCCAAAGCAACGTATTTCTGCTGCTCAAGTTCTTG : ATCATCCTTGGCTCAAGGTAGGTGGAGTAGCATCAGATAAACCATTAGATAATGCTGTCCTCTCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGACTTGCTTTAAAGGTAACATGTGACTCTGATTTCTTTGCTCTAACTCAATACAACTAACTATATGTATATCAATCTTCCATTTTATTCATTAACACTGGAACTACCATTGAGCTATGGTTTAAGTATCAGGTCATTGCTGAGAATCTCTCAGCAGATGAAATTCAGGGGCTCAAATCAATGTTCCATAACATTGACACTGATAATAGTGGAACAATCACTTATGAAGAATTGAACAGCGGATTGGCCAGACTTGGATCAAAGCTCACAGAGGCGGAAGTAAAGCAATTGATGGAAGCT : GCTGATGTGGATGGAAATGGCTCGATCGACTATATTGAGTTTATCACTGCCACCATGCATAAACATAGACTAGAAAGAGATGAAAATCTATACAAAGCATTTCAGTATTTCGATAAAGATGGTAGCGG : TTTTCTTTTGTATAATGCAGGTTCATTACAAGAGATGAACTCGAAACATCTATGGAAGAGCATGGAATAGGTGATCCAGCTAGTATAAGGGAAATAATATCTGAAGTGGACGCTGATAAT : GATGGAAGAATCAACTATAAGGAATTTTGTACAATGATGACAAGTGGAGCTAAACAACCAGGCAAGCTCTTCTAATAACACGAATCTCCTAGTCGTT</gDNA_template>
            <first_frame> I  *  C  H  I  K  R  R  H  *  L  *  K  S  T  L  A  L  Y  H  N  *  C  Q  G  P  G  P  K  D  A  Q  *  R  P  K  A  T  Y  F  C  C  S  S  S  * :   S  S  L  A  Q  G  R  W  S  S  I  R  *  T  I  R  *  C  C  P  L  K  N  E  A  I  Q  S  Y  E  Q  T  Q  D  L  L  *  R  *  H  V  T  L  I  S  L  L  *  L  N  T  T  N  Y  M  Y  I  N  L  P  F  Y  S  L  T  L  E  L  P  L  S  Y  G  L  S  I  R  S  L  L  R  I  S  Q  Q  M  K  F  R  G  S  N  Q  C  S  I  T  L  T  L  I  I  V  E  Q  S  L  M  K  N  *  T  A  D  W  P  D  L  D  Q  S  S  Q  R  R  K  *  S  N  *  W  K  L :   L  M  W  M  E  M  A  R  S  T  I  L  S  L  S  L  P  P  C  I  N  I  D  *  K  E  M  K  I  Y  T  K  H  F  S  I  S  I  K  M  V  A   : V  F  F  C  I  M  Q  V  H  Y  K  R  *  T  R  N  I  Y  G  R  A  W  N  R  *  S  S  *  Y  K  G  N  N  I  *  S  G  R  *  *   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  D  K  W  S  *  T  T  R  Q  A  L  L  I  T  R  I  S  *  S   </first_frame>
            <second_frame>  F  D  A  I  L  K  E  D  I  D  F  E  S  Q  P  W  P  S  I  T  T  S  A  K  D  L  V  R  K  M  L  N  K  D  P  K  Q  R  I  S  A  A  Q  V  L   : D  H  P  W  L  K  V  G  G  V  A  S  D  K  P  L  D  N  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  T  C  F  K  G  N  M  *  L  *  F  L  C  S  N  S  I  Q  L  T  I  C  I  S  I  F  H  F  I  H  *  H  W  N  Y  H  *  A  M  V  *  V  S  G  H  C  *  E  S  L  S  R  *  N  S  G  A  Q  I  N  V  P  *  H  *  H  *  *  *  W  N  N  H  L  *  R  I  E  Q  R  I  G  Q  T  W  I  K  A  H  R  G  G  S  K  A  I  D  G  S   : C  *  C  G  W  K  W  L  D  R  L  Y  *  V  Y  H  C  H  H  A  *  T  *  T  R  K  R  *  K  S  I  Q  S  I  S  V  F  R  *  R  W  *  R  :  F  S  F  V  *  C  R  F  I  T  R  D  E  L  E  T  S  M  E  E  H  G  I  G  D  P  A  S  I  R  E  I  I  S  E  V  D  A  D  N  :  D  G  R  I  N  Y  K  E  F  C  T  M  M  T  S  G  A  K  Q  P  G  K  L  F  *  *  H  E  S  P  S  R  </second_frame>
            <third_frame>   L  M  P  Y  *  K  K  T  L  T  L  K  V  N  L  G  P  L  S  Q  L  V  P  R  T  W  S  E  R  C  S  I  K  T  Q  S  N  V  F  L  L  L  K  F  L  :  I  I  L  G  S  R  *  V  E  *  H  Q  I  N  H  *  I  M  L  S  S  Q  E  *  S  N  S  E  L  *  T  N  S  R  L  A  L  K  V  T  C  D  S  D  F  F  A  L  T  Q  Y  N  *  L  Y  V  Y  Q  S  S  I  L  F  I  N  T  G  T  T  I  E  L  W  F  K  Y  Q  V  I  A  E  N  L  S  A  D  E  I  Q  G  L  K  S  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  N  S  G  L  A  R  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  :  A  D  V  D  G  N  G  S  I  D  Y  I  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  K  A  F  Q  Y  F  D  K  D  G  S  G :   F  L  L  Y  N  A  G  S  L  Q  E  M  N  S  K  H  L  W  K  S  M  E  *  V  I  Q  L  V  *  G  K  *  Y  L  K  W  T  L  I  M :   M  E  E  S  T  I  R  N  F  V  Q  *  *  Q  V  E  L  N  N  Q  A  S  S  S  N  N  T  N  L  L  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62165" stop="61926"/>
                    <exon start="61840" stop="61713"/>
                    <exon start="61662" stop="61593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYVYQSSILFINTGTTIELWFKYQVIAENLSADEIQGLKSMFHNIDTDNSGTITYEELNSGLARLGSKLTEAEVKQLMEAADVDGNGSIDYIEFITATMHKHRLERDENLYKAFQYFDKDGSGFLLYNAGSLQEMNSKHLWKSME*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62550" stop="62415"/>
                    <exon start="62324" stop="62200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDAILKEDIDFESQPWPSITTSAKDLVRKMLNKDPKQRISAAQVLDHPWLKVGGVASDKPLDNAVLSRMKQFRAMNKLKTCFKGNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62413" e_stop="62211"/>
            <exon e_start="62093" e_stop="61713"/>
            <exon e_start="61642" e_stop="61543"/>
            <exon e_start="61464" e_stop="61019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.819" e_score="0.975"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="62413" e_stop="62211" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.819">
            <gDNA_intron_boundary i_start="62210" i_stop="62094" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62093" e_stop="61713" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61712" i_stop="61643" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61642" e_stop="61543" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61542" i_stop="61465" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="61464" e_stop="61019" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62413" stop="62211"/>
              <exon start="62093" stop="61713"/>
              <exon start="61642" stop="61543"/>
              <exon start="61464" stop="61019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGCTGAGTTAGTAGCTACTATTGCTTTTCAAACAATTTACTCCTTTCTACTACTTACTTCATCTTTTGATTTGCCCGATGATGATAGATCATCCTTGGCTCAAGGTAGGTGGAGTAGCATCAGATAAACCATTAGATAATGCTGTCCTCTCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGACTTGCTTTAAAG : GTCATTGCTGAGAATCTCTCAGCAGATGAAATTCAGGGGCTCAAATCAATGTTCCATAACATTGACACTGATAATAGTGGAACAATCACTTATGAAGAATTGAACAGCGGATTGGCCAGACTTGGATCAAAGCTCACAGAGGCGGAAGTAAAGCAATTGATGGAAGCTGTAAGGCCGAGACACATCAACTGTTCACTTTGTTGTTCAAATGGTGTACACCATGAAATAACTAAATATATCTTGTCAACTTCAGGCTGATGTGGATGGAAATGGCTCGATCGACTATATTGAGTTTATCACTGCCACCATGCATAAACATAGACTAGAAAGAGATGAAAATCTATACAAAGCATTTCAGTATTTCGATAAAGATGGTAGCGG : GTTCATTACAAGAGATGAACTCGAAACATCTATGGAAGAGCATGGAATAGGTGATCCAGCTAGTATAAGGGAAATAATATCTGAAGTGGACGCTGATAAT : GATGGAAGAATCAACTATAAGGAATTTTGTACAATGATGACAAGTGGAGCTAAACAACCAGGCAAGCTCTTCTAATAACACGAATCTCCTAGTCGTTGGAGGTAGTGATTCTTCAACGTTTGCATCATGGACTGCCCATATGATATGACAGACATCAAGTACATGAACAACCTGAACTAGTTGGAGCTTTTAACTTCTCCCTGTAAATTGGTGATTCCTGTTTCTGTTCTTTTTCTCACTATGTTGAATTGTCTACTCATTAGTTTTTTCTATTCCACAAAGAGCACAGAGGAAATGAGTGAAGAACATAAACTCTTTACTATTTGAATAGAGAAACAAATGACCTTGTAAATATATCTTGTGTTATTTTCAAGTGTTTTTATATGTAAAATAAACATCTCTTGTAAAAAGAAACTGTGGAACATCTTTCACCCACATTTTGTTTA</gDNA_template>
            <first_frame> Y  A  E  L  V  A  T  I  A  F  Q  T  I  Y  S  F  L  L  L  T  S  S  F  D  L  P  D  D  D  R  S  S  L  A  Q  G  R  W  S  S  I  R  *  T  I  R  *  C  C  P  L  K  N  E  A  I  Q  S  Y  E  Q  T  Q  D  L  L  *  R :   S  L  L  R  I  S  Q  Q  M  K  F  R  G  S  N  Q  C  S  I  T  L  T  L  I  I  V  E  Q  S  L  M  K  N  *  T  A  D  W  P  D  L  D  Q  S  S  Q  R  R  K  *  S  N  *  W  K  L  *  G  R  D  T  S  T  V  H  F  V  V  Q  M  V  Y  T  M  K  *  L  N  I  S  C  Q  L  Q  A  D  V  D  G  N  G  S  I  D  Y  I  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  K  A  F  Q  Y  F  D  K  D  G  S  G :   F  I  T  R  D  E  L  E  T  S  M  E  E  H  G  I  G  D  P  A  S  I  R  E  I  I  S  E  V  D  A  D  N  :  D  G  R  I  N  Y  K  E  F  C  T  M  M  T  S  G  A  K  Q  P  G  K  L  F  *  *  H  E  S  P  S  R  W  R  *  *  F  F  N  V  C  I  M  D  C  P  Y  D  M  T  D  I  K  Y  M  N  N  L  N  *  L  E  L  L  T  S  P  C  K  L  V  I  P  V  S  V  L  F  L  T  M  L  N  C  L  L  I  S  F  F  Y  S  T  K  S  T  E  E  M  S  E  E  H  K  L  F  T  I  *  I  E  K  Q  M  T  L  *  I  Y  L  V  L  F  S  S  V  F  I  C  K  I  N  I  S  C  K  K  K  L  W  N  I  F  H  P  H  F  V   </first_frame>
            <second_frame>  T  L  S  *  *  L  L  L  L  F  K  Q  F  T  P  F  Y  Y  L  L  H  L  L  I  C  P  M  M  I  D  H  P  W  L  K  V  G  G  V  A  S  D  K  P  L  D  N  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  T  C  F  K   : G  H  C  *  E  S  L  S  R  *  N  S  G  A  Q  I  N  V  P  *  H  *  H  *  *  *  W  N  N  H  L  *  R  I  E  Q  R  I  G  Q  T  W  I  K  A  H  R  G  G  S  K  A  I  D  G  S  C  K  A  E  T  H  Q  L  F  T  L  L  F  K  W  C  T  P  *  N  N  *  I  Y  L  V  N  F  R  L  M  W  M  E  M  A  R  S  T  I  L  S  L  S  L  P  P  C  I  N  I  D  *  K  E  M  K  I  Y  T  K  H  F  S  I  S  I  K  M  V  A   : G  S  L  Q  E  M  N  S  K  H  L  W  K  S  M  E  *  V  I  Q  L  V  *  G  K  *  Y  L  K  W  T  L  I  M :   M  E  E  S  T  I  R  N  F  V  Q  *  *  Q  V  E  L  N  N  Q  A  S  S  S  N  N  T  N  L  L  V  V  G  G  S  D  S  S  T  F  A  S  W  T  A  H  M  I  *  Q  T  S  S  T  *  T  T  *  T  S  W  S  F  *  L  L  P  V  N  W  *  F  L  F  L  F  F  F  S  L  C  *  I  V  Y  S  L  V  F  S  I  P  Q  R  A  Q  R  K  *  V  K  N  I  N  S  L  L  F  E  *  R  N  K  *  P  C  K  Y  I  L  C  Y  F  Q  V  F  L  Y  V  K  *  T  S  L  V  K  R  N  C  G  T  S  F  T  H  I  L  F  </second_frame>
            <third_frame>   R  *  V  S  S  Y  Y  C  F  S  N  N  L  L  L  S  T  T  Y  F  I  F  *  F  A  R  *  *  *  I  I  L  G  S  R  *  V  E  *  H  Q  I  N  H  *  I  M  L  S  S  Q  E  *  S  N  S  E  L  *  T  N  S  R  L  A  L  K  :  V  I  A  E  N  L  S  A  D  E  I  Q  G  L  K  S  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  N  S  G  L  A  R  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  V  R  P  R  H  I  N  C  S  L  C  C  S  N  G  V  H  H  E  I  T  K  Y  I  L  S  T  S  G  *  C  G  W  K  W  L  D  R  L  Y  *  V  Y  H  C  H  H  A  *  T  *  T  R  K  R  *  K  S  I  Q  S  I  S  V  F  R  *  R  W  *  R  :  V  H  Y  K  R  *  T  R  N  I  Y  G  R  A  W  N  R  *  S  S  *  Y  K  G  N  N  I  *  S  G  R  *  *   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  D  K  W  S  *  T  T  R  Q  A  L  L  I  T  R  I  S  *  S  L  E  V  V  I  L  Q  R  L  H  H  G  L  P  I  *  Y  D  R  H  Q  V  H  E  Q  P  E  L  V  G  A  F  N  F  S  L  *  I  G  D  S  C  F  C  S  F  S  H  Y  V  E  L  S  T  H  *  F  F  L  F  H  K  E  H  R  G  N  E  *  R  T  *  T  L  Y  Y  L  N  R  E  T  N  D  L  V  N  I  S  C  V  I  F  K  C  F  Y  M  *  N  K  H  L  L  *  K  E  T  V  E  H  L  S  P  T  F  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61864" stop="61713"/>
                    <exon start="61642" stop="61543"/>
                    <exon start="61464" stop="61390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNISCQLQADVDGNGSIDYIEFITATMHKHRLERDENLYKAFQYFDKDGSGFITRDELETSMEEHGIGDPASIREIISEVDADNDGRINYKEFCTMMTSGAKQPGKLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62234" stop="62211"/>
                    <exon start="62093" stop="61836"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSRLALKVIAENLSADEIQGLKSMFHNIDTDNSGTITYEELNSGLARLGSKLTEAEVKQLMEAVRPRHINCSLCCSNGVHHEITKYILSTSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="64017" PGL_stop="63092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64017" e_stop="63092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="64017" e_stop="63092" e_length="926"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64017" stop="63092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTCTTTTCTCCTCTTTTTTAGTACCTTTGTCAGTGGTTATACACTGTTTATGCTGACCAATGTTTCAGTGTTGTTAACTTTCCCCATAAGATTCAATCCAACTCATTAGGGGACAATTTTAGATATATTAACAATTCCAATATAGAATCTTGAATAATTCCTTAAAAAGTGTTTCTTTTTTTAGAATAAAAATCCAATCTTTTTGTGTATCACTTATATGGTGTCTTTAACTTTTAGATTCTAATTTTTCTTGAATCTCCATCTGGGGTTGTTGTTTTCTTGATTTCTGGATCTGCTGAGATAAATGGGTATTTGTTTGAGCAAAAGTAAACCAACAGAGTACAAGTCTAGTGCGCATCATAGATCAGGTGGGAGTGATGGGGGTAGGGGGCATCATCATGGAACCCATCAAACTCAAATTCAGTATACTAAATCAGCAGGCCCAGAAACTCAATCACCCATGAGAACTCAAGCAAGTCGTAAACCAGTAGAAACCATTTTGGGCAAGGCATTTGAAGATGTTAAGGCACACTATACACTAGGTAAAGAATTGGGTAGAGGTCAATTTGGGGTTACATTTCTTTGTACTGAAATATCAAGTGGTCATCAATATGCTTGTAAGTCAATATCAAAGAAGAAACTTGTTACTAAATCTGATAAAGCTGATATGAGAAGAGAGATTCAGATTATGCAGCATTTGAGTGGACAACCAAATATAGTTGCATTTAAAGGTGCTTATGAGGATAAGAATTCAGTGTGTCTTGTTATGGAGTTGTGTGCTGGTGGAGAGTTATTTGATAGGATCATAGCTAAGGGTCATTACACTGAAAGAGCTGCTGCATCAATGTGTAGAGCTATTGTTAATGTTGTACATGTTTGCCGCCTGAGAACTTTCTCTTGTCAGACGAGTGAAAATGCTGCT</gDNA_template>
            <first_frame> S  L  L  F  S  S  F  L  V  P  L  S  V  V  I  H  C  L  C  *  P  M  F  Q  C  C  *  L  S  P  *  D  S  I  Q  L  I  R  G  Q  F  *  I  Y  *  Q  F  Q  Y  R  I  L  N  N  S  L  K  S  V  S  F  F  R  I  K  I  Q  S  F  C  V  S  L  I  W  C  L  *  L  L  D  S  N  F  S  *  I  S  I  W  G  C  C  F  L  D  F  W  I  C  *  D  K  W  V  F  V  *  A  K  V  N  Q  Q  S  T  S  L  V  R  I  I  D  Q  V  G  V  M  G  V  G  G  I  I  M  E  P  I  K  L  K  F  S  I  L  N  Q  Q  A  Q  K  L  N  H  P  *  E  L  K  Q  V  V  N  Q  *  K  P  F  W  A  R  H  L  K  M  L  R  H  T  I  H  *  V  K  N  W  V  E  V  N  L  G  L  H  F  F  V  L  K  Y  Q  V  V  I  N  M  L  V  S  Q  Y  Q  R  R  N  L  L  L  N  L  I  K  L  I  *  E  E  R  F  R  L  C  S  I  *  V  D  N  Q  I  *  L  H  L  K  V  L  M  R  I  R  I  Q  C  V  L  L  W  S  C  V  L  V  E  S  Y  L  I  G  S  *  L  R  V  I  T  L  K  E  L  L  H  Q  C  V  E  L  L  L  M  L  Y  M  F  A  A  *  E  L  S  L  V  R  R  V  K  M  L   </first_frame>
            <second_frame>  L  F  F  S  P  L  F  *  Y  L  C  Q  W  L  Y  T  V  Y  A  D  Q  C  F  S  V  V  N  F  P  H  K  I  Q  S  N  S  L  G  D  N  F  R  Y  I  N  N  S  N  I  E  S  *  I  I  P  *  K  V  F  L  F  L  E  *  K  S  N  L  F  V  Y  H  L  Y  G  V  F  N  F  *  I  L  I  F  L  E  S  P  S  G  V  V  V  F  L  I  S  G  S  A  E  I  N  G  Y  L  F  E  Q  K  *  T  N  R  V  Q  V  *  C  A  S  *  I  R  W  E  *  W  G  *  G  A  S  S  W  N  P  S  N  S  N  S  V  Y  *  I  S  R  P  R  N  S  I  T  H  E  N  S  S  K  S  *  T  S  R  N  H  F  G  Q  G  I  *  R  C  *  G  T  L  Y  T  R  *  R  I  G  *  R  S  I  W  G  Y  I  S  L  Y  *  N  I  K  W  S  S  I  C  L  *  V  N  I  K  E  E  T  C  Y  *  I  *  *  S  *  Y  E  K  R  D  S  D  Y  A  A  F  E  W  T  T  K  Y  S  C  I  *  R  C  L  *  G  *  E  F  S  V  S  C  Y  G  V  V  C  W  W  R  V  I  *  *  D  H  S  *  G  S  L  H  *  K  S  C  C  I  N  V  *  S  Y  C  *  C  C  T  C  L  P  P  E  N  F  L  L  S  D  E  *  K  C  C  </second_frame>
            <third_frame>   S  S  F  L  L  F  F  S  T  F  V  S  G  Y  T  L  F  M  L  T  N  V  S  V  L  L  T  F  P  I  R  F  N  P  T  H  *  G  T  I  L  D  I  L  T  I  P  I  *  N  L  E  *  F  L  K  K  C  F  F  F  *  N  K  N  P  I  F  L  C  I  T  Y  M  V  S  L  T  F  R  F  *  F  F  L  N  L  H  L  G  L  L  F  S  *  F  L  D  L  L  R  *  M  G  I  C  L  S  K  S  K  P  T  E  Y  K  S  S  A  H  H  R  S  G  G  S  D  G  G  R  G  H  H  H  G  T  H  Q  T  Q  I  Q  Y  T  K  S  A  G  P  E  T  Q  S  P  M  R  T  Q  A  S  R  K  P  V  E  T  I  L  G  K  A  F  E  D  V  K  A  H  Y  T  L  G  K  E  L  G  R  G  Q  F  G  V  T  F  L  C  T  E  I  S  S  G  H  Q  Y  A  C  K  S  I  S  K  K  K  L  V  T  K  S  D  K  A  D  M  R  R  E  I  Q  I  M  Q  H  L  S  G  Q  P  N  I  V  A  F  K  G  A  Y  E  D  K  N  S  V  C  L  V  M  E  L  C  A  G  G  E  L  F  D  R  I  I  A  K  G  H  Y  T  E  R  A  A  A  S  M  C  R  A  I  V  N  V  V  H  V  C  R  L  R  T  F  S  C  Q  T  S  E  N  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63709" stop="63092"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGICLSKSKPTEYKSSAHHRSGGSDGGRGHHHGTHQTQIQYTKSAGPETQSPMRTQASRKPVETILGKAFEDVKAHYTLGKELGRGQFGVTFLCTEISSGHQYACKSISKKKLVTKSDKADMRREIQIMQHLSGQPNIVAFKGAYEDKNSVCLVMELCAGGELFDRIIAKGHYTERAAASMCRAIVNVVHVCRLRTFSCQTSENAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70561" PGL_stop="71833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70561" e_stop="70808"/>
            <exon e_start="71027" e_stop="71178"/>
            <exon e_start="71243" e_stop="71833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.987" e_score="0.948"/>
          <exon-intron don_prob="0.809" acc_prob="0.974" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="70561" e_stop="70808" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.987">
            <gDNA_intron_boundary i_start="70809" i_stop="71026" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="71027" e_stop="71178" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.809" acc_prob="0.974">
            <gDNA_intron_boundary i_start="71179" i_stop="71242" i_length="64"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71243" e_stop="71833" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70561" stop="70808"/>
              <exon start="71027" stop="71178"/>
              <exon start="71243" stop="71833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCCTAAAAAAATTTCACTCTCTAATTCTACCTTCTTTATTATTATTATTTTCTTGCCATATTGTAACAGTTTTGTGGCTCATTCTTTCAAATGACAAACCATTTGTTTACTTGCATTTATACTTTACTGGTAAAGAGTAAAGAGTGTATTTTCACTTGGGTTTTCTTCGGCTTTTCTTCTGGACTCTTGTTGATGGTCACAAAGAATGCTATTTGGGCTCTTTTTATGTGCATTCTTGCTTTAG : GAGGAGCGACAGTAGGGATAGTGACCGGAGCAATTAAGGGACAGACAACAGAGACGGGGCTACTCCGAGGGGCCGGTGTTGGTGCTGTTACCGGAGCTGTTACAACTGTCCAATTAGTCGAACTTATACTTAACGGAGAATCATTTTCTAAG : GTTGCACTTGTATGTAGTCTAGTAAATGGAAAGGTATTCATGGAATGGGTTAGTCCTGCTGTTCTCAAGGCTTATCAGTGGCAAGTAAGACATCTTTTATAGCAGAAACTTTTTAATAATTTGTGGTGATTGTTTCTATTAGACACATACATTTTTGGGTTATTATTTTAAAATAAAAATTTCAGGTTACTACTCATGTAGAGTCAAGTTTGAGGGAAATATCTGACATCTTTGATATCAATGCGACCAAAGGGTTATCACAAGAGGTGATAAAGAAGTTGCCAAAGTACTATTTCTGTTCAGTGAGTACATCTCAACAAGTGACTTGTGCAATTTGCCTTCAGGTGATCGTCAGTATAAAAAATTATTTAATCTACAGTGTTTTTTCTAACTCTAATGAATTTACATCAATTATTATATTGTAGGATTTGAAAGACGGGGAGTCGGCAAGGGTGCTACCAAGTTGCAAACATTCATTCCATACACAATGCATAGATGAGTGGCTAACCAGACATGGAAGTTGTCCAATTTGTAGAGTAGAAATCTGAGAGTTAACTAGTAATACTACTAAATCCTAAAGGAGAGAAAATG</gDNA_template>
            <first_frame> F  F  L  K  K  F  H  S  L  I  L  P  S  L  L  L  L  F  S  C  H  I  V  T  V  L  W  L  I  L  S  N  D  K  P  F  V  Y  L  H  L  Y  F  T  G  K  E  *  R  V  Y  F  H  L  G  F  L  R  L  F  F  W  T  L  V  D  G  H  K  E  C  Y  L  G  S  F  Y  V  H  S  C  F  R :   R  S  D  S  R  D  S  D  R  S  N  *  G  T  D  N  R  D  G  A  T  P  R  G  R  C  W  C  C  Y  R  S  C  Y  N  C  P  I  S  R  T  Y  T  *  R  R  I  I  F  *   : G  C  T  C  M  *  S  S  K  W  K  G  I  H  G  M  G  *  S  C  C  S  Q  G  L  S  V  A  S  K  T  S  F  I  A  E  T  F  *  *  F  V  V  I  V  S  I  R  H  I  H  F  W  V  I  I  L  K  *  K  F  Q  V  T  T  H  V  E  S  S  L  R  E  I  S  D  I  F  D  I  N  A  T  K  G  L  S  Q  E  V  I  K  K  L  P  K  Y  Y  F  C  S  V  S  T  S  Q  Q  V  T  C  A  I  C  L  Q  V  I  V  S  I  K  N  Y  L  I  Y  S  V  F  S  N  S  N  E  F  T  S  I  I  I  L  *  D  L  K  D  G  E  S  A  R  V  L  P  S  C  K  H  S  F  H  T  Q  C  I  D  E  W  L  T  R  H  G  S  C  P  I  C  R  V  E  I  *  E  L  T  S  N  T  T  K  S  *  R  R  E  N  </first_frame>
            <second_frame>  S  S  *  K  N  F  T  L  *  F  Y  L  L  Y  Y  Y  Y  F  L  A  I  L  *  Q  F  C  G  S  F  F  Q  M  T  N  H  L  F  T  C  I  Y  T  L  L  V  K  S  K  E  C  I  F  T  W  V  F  F  G  F  S  S  G  L  L  L  M  V  T  K  N  A  I  W  A  L  F  M  C  I  L  A  L   : G  G  A  T  V  G  I  V  T  G  A  I  K  G  Q  T  T  E  T  G  L  L  R  G  A  G  V  G  A  V  T  G  A  V  T  T  V  Q  L  V  E  L  I  L  N  G  E  S  F  S  K  :  V  A  L  V  C  S  L  V  N  G  K  V  F  M  E  W  V  S  P  A  V  L  K  A  Y  Q  W  Q  V  R  H  L  L  *  Q  K  L  F  N  N  L  W  *  L  F  L  L  D  T  Y  I  F  G  L  L  F  *  N  K  N  F  R  L  L  L  M  *  S  Q  V  *  G  K  Y  L  T  S  L  I  S  M  R  P  K  G  Y  H  K  R  *  *  R  S  C  Q  S  T  I  S  V  Q  *  V  H  L  N  K  *  L  V  Q  F  A  F  R  *  S  S  V  *  K  I  I  *  S  T  V  F  F  L  T  L  M  N  L  H  Q  L  L  Y  C  R  I  *  K  T  G  S  R  Q  G  C  Y  Q  V  A  N  I  H  S  I  H  N  A  *  M  S  G  *  P  D  M  E  V  V  Q  F  V  E  *  K  S  E  S  *  L  V  I  L  L  N  P  K  G  E  K  M </second_frame>
            <third_frame>   L  P  K  K  I  S  L  S  N  S  T  F  F  I  I  I  I  F  L  P  Y  C  N  S  F  V  A  H  S  F  K  *  Q  T  I  C  L  L  A  F  I  L  Y  W  *  R  V  K  S  V  F  S  L  G  F  S  S  A  F  L  L  D  S  C  *  W  S  Q  R  M  L  F  G  L  F  L  C  A  F  L  L  *  :  E  E  R  Q  *  G  *  *  P  E  Q  L  R  D  R  Q  Q  R  R  G  Y  S  E  G  P  V  L  V  L  L  P  E  L  L  Q  L  S  N  *  S  N  L  Y  L  T  E  N  H  F  L  R :   L  H  L  Y  V  V  *  *  M  E  R  Y  S  W  N  G  L  V  L  L  F  S  R  L  I  S  G  K  *  D  I  F  Y  S  R  N  F  L  I  I  C  G  D  C  F  Y  *  T  H  T  F  L  G  Y  Y  F  K  I  K  I  S  G  Y  Y  S  C  R  V  K  F  E  G  N  I  *  H  L  *  Y  Q  C  D  Q  R  V  I  T  R  G  D  K  E  V  A  K  V  L  F  L  F  S  E  Y  I  S  T  S  D  L  C  N  L  P  S  G  D  R  Q  Y  K  K  L  F  N  L  Q  C  F  F  *  L  *  *  I  Y  I  N  Y  Y  I  V  G  F  E  R  R  G  V  G  K  G  A  T  K  L  Q  T  F  I  P  Y  T  M  H  R  *  V  A  N  Q  T  W  K  L  S  N  L  *  S  R  N  L  R  V  N  *  *  Y  Y  *  I  L  K  E  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70631" stop="70808"/>
                    <exon start="71027" stop="71178"/>
                    <exon start="71243" stop="71344"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFCGSFFQMTNHLFTCIYTLLVKSKECIFTWVFFGFSSGLLLMVTKNAIWALFMCILALGGATVGIVTGAIKGQTTETGLLRGAGVGAVTGAVTTVQLVELILNGESFSKVALVCSLVNGKVFMEWVSPAVLKAYQWQVRHLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71419" stop="71667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFQVTTHVESSLREISDIFDINATKGLSQEVIKKLPKYYFCSVSTSQQVTCAICLQVIVSIKNYLIYSVFSNSNEFTSIIIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="77662" PGL_stop="74127"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77662" e_stop="77209"/>
            <exon e_start="76574" e_stop="76458"/>
            <exon e_start="75835" e_stop="74127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.803" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77662" e_stop="77209" e_length="454"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="77208" i_stop="76575" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76574" e_stop="76458" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.803">
            <gDNA_intron_boundary i_start="76457" i_stop="75836" i_length="622"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="75835" e_stop="74127" e_length="1709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77662" stop="77209"/>
              <exon start="76574" stop="76458"/>
              <exon start="75835" stop="74127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACAATCTCTTGCCGGCGCAGTCATCTGAATTTGAGAGGGTGAGAGAGATGAGTAATGGCTGAATCTGTGAATCGAAAATGAAGATCACCGGCGACAAGGCTGAGCTACCGGCGGTTACGTTTCCCGGACTAGATCTCTTACAAAAATCAACGAAACCGCCTCGAAGGAAAACGAACAACTTCGCCGCTGGAGTGAAGTTGCGGAGAGACATTGGAGGAAATACTCCTAAAGGGAGGAGGAGTAGGCCGGAAACTCCTCTTCTACGGTGGAAGTTCAATGAGGATATTCATGACAATGGTTCTGTAAAGGAGGAAGCTTCGACGGTGGAGGTTGATCGGAAATGTAGTCGGAATAATGGTAGGACTGTGGTTTCTGTTAGGAAATTAGGTGCGGGACTGTTTAGGCAGCAGCAGCTGCCGGAAGTAAAAAACGATCACAAGTTTGGGTTTCAG : GCTGGTCGGGTTGAGATGCATTTTCATCATCGCAGTAAAGTGCATGACTCTCTCATTAATGATCCAGTGCAGAGTCCTCGGTCTGTCTTTGGTCCAACTAATGGCCTTTTTCACAAG : TTTGAAACCTCACTTCAGTTTTCCCATTCTGCTATGGAGGGGGCAACAAAGTGGGACCCAGTTGGCTGGACAACAGCGGTGGAAACAAAGAAGATATATGGGTCTCAGAAGCTTCTTGATCACCAAGTGAATACTGCTTCAATGATTTCTTCTCTTGAGGCAGAACTAGAATGTGCTCGTGCCCGAGTTCATCAACTTGAGACGGAGCGGCATTCATCGAAAAAGAAACTCAAGCAGTTCTTGAGGAAACTCAGTGAAGAAAAAGCAGCATGGCGGAGCAAAGAGCATGAGAAAATCCGGGCAATTATGGATGAAATGAGAGCTGACTTCTCCCGGGAAAGGAAAAACCGAAAGAGGCTGGAAATTGTCAATTCCCAATTAGTTAATGAATTGGCTGATGCCAAGTTATTAGCAAAACGTTATTTGCAAAATTTCGAAAAGGAAAAACAGGCTAGAGGGTTGATAGAAGAAGTGTGCGATGAATTGGCCAAAGAACTTGGAGAAGACAAGGCTGAAGTTGAGGAAATGAAGAGAGAATCTCTGAAGTTCACAGAGGAAGTAGATGAAGAAAGAAAGATGTTGCAGATGGCTGAGGTTTGGCGTGAGGAACGGGTCCAGATGAAACTAGTTGATGCCAAGGTGATGCTTGAAGAGAAGTATTCCCAAATGAACAAACTCATTGGAGAACTAGAATCATTTTTGGATTCCAGAGGTTTGAGTTTTGATGTGGAGAAGATGAAAAGAGCTGAGCAACTCCAACAGGCCGCTGCCTCTGTTAGCATTCGTGATATTAGAGAACTCACTTATGAACCACCAAATCAAGATGATATTCTTTCCGTTTTTGAGGACGTTCATTTTGTTGAACCTGATGAAAAGGATATCCAGCCATGTACATTTAGTCCTCGCTCTCTCAGTCCTGATGGTGTTGTTTACGACTTTCGCAGAATTTCACATGCATATGTCAATCAGAGTGATAATTTAGAGGAAGAGGGAAGTGAGTGGGAAACGGTGACCAATCTTGAGGAGCAAGGGTCCAACTATTCTCTTGAAGGAAGCATTTCATCCGTGAACAAGAATTGCCGGCACAGCAATGTATCAAGAAGTAGAGCAGACTCAGAGGGAATTGGTGATGATGGCGCATCGGTTTCAGAGATTAGTGAAGTTTGTTCTGGACCAGCTCGGCAACTTACAGAGTTGTCATCTGCATCTAAACTTTGGAAGTCACGCCCGAGTAATGGAGACAATTTCAAAATAAAATCACTAGAAGGATCTAAAGGGAGGCTGTCAAATGGGACCATTCTTTCTCGGGATCATGGTTCTAGTAAAGGTGGCTTTAGCCCCTCGGAACTTGGCCAGGAGTGGAGCTCACCTGAGTCTGGCAACTCACAAATAGCACGCGGGATGAAAGGTTGCATTGAATGGCCGCAAAACTCTCAGAAGAAAAGCTTAAAAACAAAGTTATTGCAGGCAAGAACAGAGAGCCAGAAGGTACAGCTGCGCCAGGTCTTGAAGCAGAAGATCTGAGATGAGCGTTCTTAATACATGAGCTCTGAAGCCTCCTGCTAACAGATATTGTGGAAAGCTCCAAACTTCAAAGTTGTATTATCATTTTCTCCAAATCTAATTAATTAAATAGTATATTTAATTTAATATCATATTTTATTTATGTAATGTAGAATTAAAAGTCCAACCCTTTAATTTCTTAGTTA</gDNA_template>
            <first_frame> A  Q  S  L  A  G  A  V  I  *  I  *  E  G  E  R  D  E  *  W  L  N  L  *  I  E  N  E  D  H  R  R  Q  G  *  A  T  G  G  Y  V  S  R  T  R  S  L  T  K  I  N  E  T  A  S  K  E  N  E  Q  L  R  R  W  S  E  V  A  E  R  H  W  R  K  Y  S  *  R  E  E  E  *  A  G  N  S  S  S  T  V  E  V  Q  *  G  Y  S  *  Q  W  F  C  K  G  G  S  F  D  G  G  G  *  S  E  M  *  S  E  *  W  *  D  C  G  F  C  *  E  I  R  C  G  T  V  *  A  A  A  A  A  G  S  K  K  R  S  Q  V  W  V  S   : G  W  S  G  *  D  A  F  S  S  S  Q  *  S  A  *  L  S  H  *  *  S  S  A  E  S  S  V  C  L  W  S  N  *  W  P  F  S  Q   : V  *  N  L  T  S  V  F  P  F  C  Y  G  G  G  N  K  V  G  P  S  W  L  D  N  S  G  G  N  K  E  D  I  W  V  S  E  A  S  *  S  P  S  E  Y  C  F  N  D  F  F  S  *  G  R  T  R  M  C  S  C  P  S  S  S  T  *  D  G  A  A  F  I  E  K  E  T  Q  A  V  L  E  E  T  Q  *  R  K  S  S  M  A  E  Q  R  A  *  E  N  P  G  N  Y  G  *  N  E  S  *  L  L  P  G  K  E  K  P  K  E  A  G  N  C  Q  F  P  I  S  *  *  I  G  *  C  Q  V  I  S  K  T  L  F  A  K  F  R  K  G  K  T  G  *  R  V  D  R  R  S  V  R  *  I  G  Q  R  T  W  R  R  Q  G  *  S  *  G  N  E  E  R  I  S  E  V  H  R  G  S  R  *  R  K  K  D  V  A  D  G  *  G  L  A  *  G  T  G  P  D  E  T  S  *  C  Q  G  D  A  *  R  E  V  F  P  N  E  Q  T  H  W  R  T  R  I  I  F  G  F  Q  R  F  E  F  *  C  G  E  D  E  K  S  *  A  T  P  T  G  R  C  L  C  *  H  S  *  Y  *  R  T  H  L  *  T  T  K  S  R  *  Y  S  F  R  F  *  G  R  S  F  C  *  T  *  *  K  G  Y  P  A  M  Y  I  *  S  S  L  S  Q  S  *  W  C  C  L  R  L  S  Q  N  F  T  C  I  C  Q  S  E  *  *  F  R  G  R  G  K  *  V  G  N  G  D  Q  S  *  G  A  R  V  Q  L  F  S  *  R  K  H  F  I  R  E  Q  E  L  P  A  Q  Q  C  I  K  K  *  S  R  L  R  G  N  W  *  *  W  R  I  G  F  R  D  *  *  S  L  F  W  T  S  S  A  T  Y  R  V  V  I  C  I  *  T  L  E  V  T  P  E  *  W  R  Q  F  Q  N  K  I  T  R  R  I  *  R  E  A  V  K  W  D  H  S  F  S  G  S  W  F  *  *  R  W  L  *  P  L  G  T  W  P  G  V  E  L  T  *  V  W  Q  L  T  N  S  T  R  D  E  R  L  H  *  M  A  A  K  L  S  E  E  K  L  K  N  K  V  I  A  G  K  N  R  E  P  E  G  T  A  A  P  G  L  E  A  E  D  L  R  *  A  F  L  I  H  E  L  *  S  L  L  L  T  D  I  V  E  S  S  K  L  Q  S  C  I  I  I  F  S  K  S  N  *  L  N  S  I  F  N  L  I  S  Y  F  I  Y  V  M  *  N  *  K  S  N  P  L  I  S  *  L </first_frame>
            <second_frame>  H  N  L  L  P  A  Q  S  S  E  F  E  R  V  R  E  M  S  N  G  *  I  C  E  S  K  M  K  I  T  G  D  K  A  E  L  P  A  V  T  F  P  G  L  D  L  L  Q  K  S  T  K  P  P  R  R  K  T  N  N  F  A  A  G  V  K  L  R  R  D  I  G  G  N  T  P  K  G  R  R  S  R  P  E  T  P  L  L  R  W  K  F  N  E  D  I  H  D  N  G  S  V  K  E  E  A  S  T  V  E  V  D  R  K  C  S  R  N  N  G  R  T  V  V  S  V  R  K  L  G  A  G  L  F  R  Q  Q  Q  L  P  E  V  K  N  D  H  K  F  G  F  Q  :  A  G  R  V  E  M  H  F  H  H  R  S  K  V  H  D  S  L  I  N  D  P  V  Q  S  P  R  S  V  F  G  P  T  N  G  L  F  H  K  :  F  E  T  S  L  Q  F  S  H  S  A  M  E  G  A  T  K  W  D  P  V  G  W  T  T  A  V  E  T  K  K  I  Y  G  S  Q  K  L  L  D  H  Q  V  N  T  A  S  M  I  S  S  L  E  A  E  L  E  C  A  R  A  R  V  H  Q  L  E  T  E  R  H  S  S  K  K  K  L  K  Q  F  L  R  K  L  S  E  E  K  A  A  W  R  S  K  E  H  E  K  I  R  A  I  M  D  E  M  R  A  D  F  S  R  E  R  K  N  R  K  R  L  E  I  V  N  S  Q  L  V  N  E  L  A  D  A  K  L  L  A  K  R  Y  L  Q  N  F  E  K  E  K  Q  A  R  G  L  I  E  E  V  C  D  E  L  A  K  E  L  G  E  D  K  A  E  V  E  E  M  K  R  E  S  L  K  F  T  E  E  V  D  E  E  R  K  M  L  Q  M  A  E  V  W  R  E  E  R  V  Q  M  K  L  V  D  A  K  V  M  L  E  E  K  Y  S  Q  M  N  K  L  I  G  E  L  E  S  F  L  D  S  R  G  L  S  F  D  V  E  K  M  K  R  A  E  Q  L  Q  Q  A  A  A  S  V  S  I  R  D  I  R  E  L  T  Y  E  P  P  N  Q  D  D  I  L  S  V  F  E  D  V  H  F  V  E  P  D  E  K  D  I  Q  P  C  T  F  S  P  R  S  L  S  P  D  G  V  V  Y  D  F  R  R  I  S  H  A  Y  V  N  Q  S  D  N  L  E  E  E  G  S  E  W  E  T  V  T  N  L  E  E  Q  G  S  N  Y  S  L  E  G  S  I  S  S  V  N  K  N  C  R  H  S  N  V  S  R  S  R  A  D  S  E  G  I  G  D  D  G  A  S  V  S  E  I  S  E  V  C  S  G  P  A  R  Q  L  T  E  L  S  S  A  S  K  L  W  K  S  R  P  S  N  G  D  N  F  K  I  K  S  L  E  G  S  K  G  R  L  S  N  G  T  I  L  S  R  D  H  G  S  S  K  G  G  F  S  P  S  E  L  G  Q  E  W  S  S  P  E  S  G  N  S  Q  I  A  R  G  M  K  G  C  I  E  W  P  Q  N  S  Q  K  K  S  L  K  T  K  L  L  Q  A  R  T  E  S  Q  K  V  Q  L  R  Q  V  L  K  Q  K  I  *  D  E  R  S  *  Y  M  S  S  E  A  S  C  *  Q  I  L  W  K  A  P  N  F  K  V  V  L  S  F  S  P  N  L  I  N  *  I  V  Y  L  I  *  Y  H  I  L  F  M  *  C  R  I  K  S  P  T  L  *  F  L  S   </second_frame>
            <third_frame>   T  I  S  C  R  R  S  H  L  N  L  R  G  *  E  R  *  V  M  A  E  S  V  N  R  K  *  R  S  P  A  T  R  L  S  Y  R  R  L  R  F  P  D  *  I  S  Y  K  N  Q  R  N  R  L  E  G  K  R  T  T  S  P  L  E  *  S  C  G  E  T  L  E  E  I  L  L  K  G  G  G  V  G  R  K  L  L  F  Y  G  G  S  S  M  R  I  F  M  T  M  V  L  *  R  R  K  L  R  R  W  R  L  I  G  N  V  V  G  I  M  V  G  L  W  F  L  L  G  N  *  V  R  D  C  L  G  S  S  S  C  R  K  *  K  T  I  T  S  L  G  F  R :   L  V  G  L  R  C  I  F  I  I  A  V  K  C  M  T  L  S  L  M  I  Q  C  R  V  L  G  L  S  L  V  Q  L  M  A  F  F  T  S :   L  K  P  H  F  S  F  P  I  L  L  W  R  G  Q  Q  S  G  T  Q  L  A  G  Q  Q  R  W  K  Q  R  R  Y  M  G  L  R  S  F  L  I  T  K  *  I  L  L  Q  *  F  L  L  L  R  Q  N  *  N  V  L  V  P  E  F  I  N  L  R  R  S  G  I  H  R  K  R  N  S  S  S  S  *  G  N  S  V  K  K  K  Q  H  G  G  A  K  S  M  R  K  S  G  Q  L  W  M  K  *  E  L  T  S  P  G  K  G  K  T  E  R  G  W  K  L  S  I  P  N  *  L  M  N  W  L  M  P  S  Y  *  Q  N  V  I  C  K  I  S  K  R  K  N  R  L  E  G  *  *  K  K  C  A  M  N  W  P  K  N  L  E  K  T  R  L  K  L  R  K  *  R  E  N  L  *  S  S  Q  R  K  *  M  K  K  E  R  C  C  R  W  L  R  F  G  V  R  N  G  S  R  *  N  *  L  M  P  R  *  C  L  K  R  S  I  P  K  *  T  N  S  L  E  N  *  N  H  F  W  I  P  E  V  *  V  L  M  W  R  R  *  K  E  L  S  N  S  N  R  P  L  P  L  L  A  F  V  I  L  E  N  S  L  M  N  H  Q  I  K  M  I  F  F  P  F  L  R  T  F  I  L  L  N  L  M  K  R  I  S  S  H  V  H  L  V  L  A  L  S  V  L  M  V  L  F  T  T  F  A  E  F  H  M  H  M  S  I  R  V  I  I  *  R  K  R  E  V  S  G  K  R  *  P  I  L  R  S  K  G  P  T  I  L  L  K  E  A  F  H  P  *  T  R  I  A  G  T  A  M  Y  Q  E  V  E  Q  T  Q  R  E  L  V  M  M  A  H  R  F  Q  R  L  V  K  F  V  L  D  Q  L  G  N  L  Q  S  C  H  L  H  L  N  F  G  S  H  A  R  V  M  E  T  I  S  K  *  N  H  *  K  D  L  K  G  G  C  Q  M  G  P  F  F  L  G  I  M  V  L  V  K  V  A  L  A  P  R  N  L  A  R  S  G  A  H  L  S  L  A  T  H  K  *  H  A  G  *  K  V  A  L  N  G  R  K  T  L  R  R  K  A  *  K  Q  S  Y  C  R  Q  E  Q  R  A  R  R  Y  S  C  A  R  S  *  S  R  R  S  E  M  S  V  L  N  T  *  A  L  K  P  P  A  N  R  Y  C  G  K  L  Q  T  S  K  L  Y  Y  H  F  L  Q  I  *  L  I  K  *  Y  I  *  F  N  I  I  F  Y  L  C  N  V  E  L  K  V  Q  P  F  N  F  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77598" stop="77209"/>
                    <exon start="76574" stop="76458"/>
                    <exon start="75835" stop="74312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2028</number_coding_nucleotides>
                  <number_encoded_amino_acids>676</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICESKMKITGDKAELPAVTFPGLDLLQKSTKPPRRKTNNFAAGVKLRRDIGGNTPKGRRSRPETPLLRWKFNEDIHDNGSVKEEASTVEVDRKCSRNNGRTVVSVRKLGAGLFRQQQLPEVKNDHKFGFQAGRVEMHFHHRSKVHDSLINDPVQSPRSVFGPTNGLFHKFETSLQFSHSAMEGATKWDPVGWTTAVETKKIYGSQKLLDHQVNTASMISSLEAELECARARVHQLETERHSSKKKLKQFLRKLSEEKAAWRSKEHEKIRAIMDEMRADFSRERKNRKRLEIVNSQLVNELADAKLLAKRYLQNFEKEKQARGLIEEVCDELAKELGEDKAEVEEMKRESLKFTEEVDEERKMLQMAEVWREERVQMKLVDAKVMLEEKYSQMNKLIGELESFLDSRGLSFDVEKMKRAEQLQQAAASVSIRDIRELTYEPPNQDDILSVFEDVHFVEPDEKDIQPCTFSPRSLSPDGVVYDFRRISHAYVNQSDNLEEEGSEWETVTNLEEQGSNYSLEGSISSVNKNCRHSNVSRSRADSEGIGDDGASVSEISEVCSGPARQLTELSSASKLWKSRPSNGDNFKIKSLEGSKGRLSNGTILSRDHGSSKGGFSPSELGQEWSSPESGNSQIARGMKGCIEWPQNSQKKSLKTKLLQARTESQKVQLRQVLKQKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85219" PGL_stop="87457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85219" e_stop="85321"/>
            <exon e_start="86859" e_stop="87457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85219" e_stop="85321" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85322" i_stop="86858" i_length="1537"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="86859" e_stop="87457" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85219" stop="85321"/>
              <exon start="86859" stop="87457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAATTAACAAAATCTAGGGTTTATAATTTCACCACAACTACTGTTTGTTTATCTCCCATTTTTTGAATTCTTCTTATCTTCTAACAGGCTAAAATTCAAG : CTCTGGACAGGATAAAGTCGCTGTGTCTTATGGCATGCATTTGTTGCTTTGGGCAGTCACATGGGTATCAGATATGCTTTTCTGAGTTGTCGTTAGGATTGTCCCTTATTTAGAGGCTTTAGTTGTACTGCTCTGCCTTTTCGCGATACTAGAGAGCTGATGGAGAAATGACGTAATACAGCTATCCTGCAACTTGGACACATGATAAAAGAATTCCTTCCTACATTTTTGTTCTTTTCAGTCTAGAGACATAATTCACCATGAAAAATAAACTTAGGTGGCGAAAAGAAGGGAAGATAGAAAGAGGAATTCGGAAGCAATTCCTTTTATGCGAATCCTACTTAGCCTTGGATATTAACCAACAACATGTCCAATGTAATTTCATAAGCAGGCTTTGAGGAGGGTAAGATGTACCTCTACCTTTCTGCGGTATAAAGGTTGTTTCCAGTAGACCTTGGCTCAAAAGAAAAGATTTTGAAGTAACCATCCATGAAGTTATAATCGTTTTCTCCTAGTAATATTTACTTGTCTGTTCCTAATTTTTTTTTTAATCATCATATTCGGCTTATTTGATGTTTATGCCAGTTTAGTCTAATTTC</gDNA_template>
            <first_frame> C  *  L  T  K  S  R  V  Y  N  F  T  T  T  T  V  C  L  S  P  I  F  *  I  L  L  I  F  *  Q  A  K  I  Q   : A  L  D  R  I  K  S  L  C  L  M  A  C  I  C  C  F  G  Q  S  H  G  Y  Q  I  C  F  S  E  L  S  L  G  L  S  L  I  *  R  L  *  L  Y  C  S  A  F  S  R  Y  *  R  A  D  G  E  M  T  *  Y  S  Y  P  A  T  W  T  H  D  K  R  I  P  S  Y  I  F  V  L  F  S  L  E  T  *  F  T  M  K  N  K  L  R  W  R  K  E  G  K  I  E  R  G  I  R  K  Q  F  L  L  C  E  S  Y  L  A  L  D  I  N  Q  Q  H  V  Q  C  N  F  I  S  R  L  *  G  G  *  D  V  P  L  P  F  C  G  I  K  V  V  S  S  R  P  W  L  K  R  K  D  F  E  V  T  I  H  E  V  I  I  V  F  S  *  *  Y  L  L  V  C  S  *  F  F  F  *  S  S  Y  S  A  Y  L  M  F  M  P  V  *  S  N  F </first_frame>
            <second_frame>  A  N  *  Q  N  L  G  F  I  I  S  P  Q  L  L  F  V  Y  L  P  F  F  E  F  F  L  S  S  N  R  L  K  F  K  :  L  W  T  G  *  S  R  C  V  L  W  H  A  F  V  A  L  G  S  H  M  G  I  R  Y  A  F  L  S  C  R  *  D  C  P  L  F  R  G  F  S  C  T  A  L  P  F  R  D  T  R  E  L  M  E  K  *  R  N  T  A  I  L  Q  L  G  H  M  I  K  E  F  L  P  T  F  L  F  F  S  V  *  R  H  N  S  P  *  K  I  N  L  G  G  E  K  K  G  R  *  K  E  E  F  G  S  N  S  F  Y  A  N  P  T  *  P  W  I  L  T  N  N  M  S  N  V  I  S  *  A  G  F  E  E  G  K  M  Y  L  Y  L  S  A  V  *  R  L  F  P  V  D  L  G  S  K  E  K  I  L  K  *  P  S  M  K  L  *  S  F  S  P  S  N  I  Y  L  S  V  P  N  F  F  F  N  H  H  I  R  L  I  *  C  L  C  Q  F  S  L  I   </second_frame>
            <third_frame>   L  I  N  K  I  *  G  L  *  F  H  H  N  Y  C  L  F  I  S  H  F  L  N  S  S  Y  L  L  T  G  *  N  S  S :   S  G  Q  D  K  V  A  V  S  Y  G  M  H  L  L  L  W  A  V  T  W  V  S  D  M  L  F  *  V  V  V  R  I  V  P  Y  L  E  A  L  V  V  L  L  C  L  F  A  I  L  E  S  *  W  R  N  D  V  I  Q  L  S  C  N  L  D  T  *  *  K  N  S  F  L  H  F  C  S  F  Q  S  R  D  I  I  H  H  E  K  *  T  *  V  A  K  R  R  E  D  R  K  R  N  S  E  A  I  P  F  M  R  I  L  L  S  L  G  Y  *  P  T  T  C  P  M  *  F  H  K  Q  A  L  R  R  V  R  C  T  S  T  F  L  R  Y  K  G  C  F  Q  *  T  L  A  Q  K  K  R  F  *  S  N  H  P  *  S  Y  N  R  F  L  L  V  I  F  T  C  L  F  L  I  F  F  L  I  I  I  F  G  L  F  D  V  Y  A  S  L  V  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0030P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="90548" PGL_stop="89770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90548" e_stop="90449"/>
            <exon e_start="90251" e_stop="89770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.686" acc_prob="0.964" e_score="0.940"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="90548" e_stop="90449" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.686" acc_prob="0.964">
            <gDNA_intron_boundary i_start="90448" i_stop="90252" i_length="197"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="90251" e_stop="89770" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90548" stop="90449"/>
              <exon start="90251" stop="89770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599233" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCAAATCAACATCTTGTATTGCTTTTGTTCTTGAAATGTACAAGGAAGCAGGACTATTTGGTCCACTTGCAAGTTCAATTCAGGTTACAGAATTCACG : ATAAAAGATGCTTACTCACTGAAGTTTTTTGAAAACAACACGAATCGGTTGCCTATGTGGTGCAATGCGGATGACACAGTGAAGCTTCCTTTCTGTCAAATTCTAGGGAAGTACCGGATGGAATTGCCTGGATACAATACAATGGATGTATACGCCCATATGAATGAAAAGTGCCCATCAATGCCTCCAAAATACTACAGGCCACAAAGTTGTTGACAATGATTTTTATGGCCAGCTATCTTACTGTAGTAAGGTATGTACAAGGATGGTTGTTCCAATGCTTTACAGGTTAGTGTGACAATTGTGTTGGATTTATACCGAAAGCCATAGGGAAAAAGAGAGAATGCTAATGAACATGTATGTCAGCAGACTTGGAATTGAAGTGTAAATATTATAGTAGTAGTTTTGTTGATTTGTTCTGTCTGAAAAACTTTATAGATCCTGAAACAATCTGCAGTTAATATAACCACAAATTTGTTCCA</gDNA_template>
            <first_frame> W  Q  I  N  I  L  Y  C  F  C  S  *  N  V  Q  G  S  R  T  I  W  S  T  C  K  F  N  S  G  Y  R  I  H   : D  K  R  C  L  L  T  E  V  F  *  K  Q  H  E  S  V  A  Y  V  V  Q  C  G  *  H  S  E  A  S  F  L  S  N  S  R  E  V  P  D  G  I  A  W  I  Q  Y  N  G  C  I  R  P  Y  E  *  K  V  P  I  N  A  S  K  I  L  Q  A  T  K  L  L  T  M  I  F  M  A  S  Y  L  T  V  V  R  Y  V  Q  G  W  L  F  Q  C  F  T  G  *  C  D  N  C  V  G  F  I  P  K  A  I  G  K  K  R  E  C  *  *  T  C  M  S  A  D  L  E  L  K  C  K  Y  Y  S  S  S  F  V  D  L  F  C  L  K  N  F  I  D  P  E  T  I  C  S  *  Y  N  H  K  F  V  P </first_frame>
            <second_frame>  G  K  S  T  S  C  I  A  F  V  L  E  M  Y  K  E  A  G  L  F  G  P  L  A  S  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  S  L  K  F  F  E  N  N  T  N  R  L  P  M  W  C  N  A  D  D  T  V  K  L  P  F  C  Q  I  L  G  K  Y  R  M  E  L  P  G  Y  N  T  M  D  V  Y  A  H  M  N  E  K  C  P  S  M  P  P  K  Y  Y  R  P  Q  S  C  *  Q  *  F  L  W  P  A  I  L  L  *  *  G  M  Y  K  D  G  C  S  N  A  L  Q  V  S  V  T  I  V  L  D  L  Y  R  K  P  *  G  K  R  E  N  A  N  E  H  V  C  Q  Q  T  W  N  *  S  V  N  I  I  V  V  V  L  L  I  C  S  V  *  K  T  L  *  I  L  K  Q  S  A  V  N  I  T  T  N  L  F   </second_frame>
            <third_frame>   A  N  Q  H  L  V  L  L  L  F  L  K  C  T  R  K  Q  D  Y  L  V  H  L  Q  V  Q  F  R  L  Q  N  S  R :   *  K  M  L  T  H  *  S  F  L  K  T  T  R  I  G  C  L  C  G  A  M  R  M  T  Q  *  S  F  L  S  V  K  F  *  G  S  T  G  W  N  C  L  D  T  I  Q  W  M  Y  T  P  I  *  M  K  S  A  H  Q  C  L  Q  N  T  T  G  H  K  V  V  D  N  D  F  Y  G  Q  L  S  Y  C  S  K  V  C  T  R  M  V  V  P  M  L  Y  R  L  V  *  Q  L  C  W  I  Y  T  E  S  H  R  E  K  E  R  M  L  M  N  M  Y  V  S  R  L  G  I  E  V  *  I  L  *  *  *  F  C  *  F  V  L  S  E  K  L  Y  R  S  *  N  N  L  Q  L  I  *  P  Q  I  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90547" stop="90449"/>
                    <exon start="90251" stop="90036"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKSTSCIAFVLEMYKEAGLFGPLASSIQVTEFTIKDAYSLKFFENNTNRLPMWCNADDTVKLPFCQILGKYRMELPGYNTMDVYAHMNEKCPSMPPKYYRPQSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="92088" PGL_stop="90560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92088" e_stop="91886"/>
            <exon e_start="91061" e_stop="90560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92088" e_stop="91886" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91885" i_stop="91062" i_length="824"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91061" e_stop="90560" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92088" stop="91886"/>
              <exon start="91061" stop="90560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92088" stop="91886"/>
              <exon start="91061" stop="90723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTATGAACTGACAAAAGATGATTCCAATCCACATATTGCATTGCTGCCTTTGCACCCTGATCTCCGTGCCAAGTTTAATCAGACTGCTGCTTGGGAATATGCACAAAGCATGGAAGGCAAACCATATGGTTTCCATAACCTAATATTTAGCTGGATAGATACTATTGACGGAAATTATCCCTCTCCCTTGGATGCTCATCTG : GTTGCTTCTGTCATGACTGTTTGGAATCACTTACAGCCCGCATATGCAGCTAACATGTGGAATGAAGCCTTAAACAAGCGACTTGGAACTCGGGTCATATCTGTTTTCTTTAATTAGTGAGCTGCTATTTATTGAGATAAAAGTTGGACAAAGATACTCATAGAAGCTGTTCATCTAAAGATAATGCATGCCTCCATTAAGTAACTAGTCTAATTAAGTCGAGCAAATTACTATGAAATGAAGAAAGCTCATTAACATAACTATAGTTTTTCCTGAAAATGCACAAGGGTTGGTTAAAAGCATGCTTTCAAAATTCTCGAGAAAAAATCCTAGAGAGTGCAGGCTTGTTCCGTACATCTGATATGATCGACAACTAGTGTTGAATGAGGATCTGAATTTTGTGTCCATGCAGGGCCTTGATCTTCCTGATATTCTTGTCGAAATTGAAAAGCGTGGGTCATCTTTTGCCAAATTGTTGACTATCCCAGAACAGGATGACTGG</gDNA_template>
            <first_frame> S  M  N  *  Q  K  M  I  P  I  H  I  L  H  C  C  L  C  T  L  I  S  V  P  S  L  I  R  L  L  L  G  N  M  H  K  A  W  K  A  N  H  M  V  S  I  T  *  Y  L  A  G  *  I  L  L  T  E  I  I  P  L  P  W  M  L  I  W :   L  L  L  S  *  L  F  G  I  T  Y  S  P  H  M  Q  L  T  C  G  M  K  P  *  T  S  D  L  E  L  G  S  Y  L  F  S  L  I  S  E  L  L  F  I  E  I  K  V  G  Q  R  Y  S  *  K  L  F  I  *  R  *  C  M  P  P  L  S  N  *  S  N  *  V  E  Q  I  T  M  K  *  R  K  L  I  N  I  T  I  V  F  P  E  N  A  Q  G  L  V  K  S  M  L  S  K  F  S  R  K  N  P  R  E  C  R  L  V  P  Y  I  *  Y  D  R  Q  L  V  L  N  E  D  L  N  F  V  S  M  Q  G  L  D  L  P  D  I  L  V  E  I  E  K  R  G  S  S  F  A  K  L  L  T  I  P  E  Q  D  D  W </first_frame>
            <second_frame>  V  *  T  D  K  R  *  F  Q  S  T  Y  C  I  A  A  F  A  P  *  S  P  C  Q  V  *  S  D  C  C  L  G  I  C  T  K  H  G  R  Q  T  I  W  F  P  *  P  N  I  *  L  D  R  Y  Y  *  R  K  L  S  L  S  L  G  C  S  S   : G  C  F  C  H  D  C  L  E  S  L  T  A  R  I  C  S  *  H  V  E  *  S  L  K  Q  A  T  W  N  S  G  H  I  C  F  L  *  L  V  S  C  Y  L  L  R  *  K  L  D  K  D  T  H  R  S  C  S  S  K  D  N  A  C  L  H  *  V  T  S  L  I  K  S  S  K  L  L  *  N  E  E  S  S  L  T  *  L  *  F  F  L  K  M  H  K  G  W  L  K  A  C  F  Q  N  S  R  E  K  I  L  E  S  A  G  L  F  R  T  S  D  M  I  D  N  *  C  *  M  R  I  *  I  L  C  P  C  R  A  L  I  F  L  I  F  L  S  K  L  K  S  V  G  H  L  L  P  N  C  *  L  S  Q  N  R  M  T   </second_frame>
            <third_frame>   Y  E  L  T  K  D  D  S  N  P  H  I  A  L  L  P  L  H  P  D  L  R  A  K  F  N  Q  T  A  A  W  E  Y  A  Q  S  M  E  G  K  P  Y  G  F  H  N  L  I  F  S  W  I  D  T  I  D  G  N  Y  P  S  P  L  D  A  H  L  :  V  A  S  V  M  T  V  W  N  H  L  Q  P  A  Y  A  A  N  M  W  N  E  A  L  N  K  R  L  G  T  R  V  I  S  V  F  F  N  *  *  A  A  I  Y  *  D  K  S  W  T  K  I  L  I  E  A  V  H  L  K  I  M  H  A  S  I  K  *  L  V  *  L  S  R  A  N  Y  Y  E  M  K  K  A  H  *  H  N  Y  S  F  S  *  K  C  T  R  V  G  *  K  H  A  F  K  I  L  E  K  K  S  *  R  V  Q  A  C  S  V  H  L  I  *  S  T  T  S  V  E  *  G  S  E  F  C  V  H  A  G  P  *  S  S  *  Y  S  C  R  N  *  K  A  W  V  I  F  C  Q  I  V  D  Y  P  R  T  G  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92086" stop="91886"/>
                    <exon start="91061" stop="90945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YELTKDDSNPHIALLPLHPDLRAKFNQTAAWEYAQSMEGKPYGFHNLIFSWIDTIDGNYPSPLDAHLVASVMTVWNHLQPAYAANMWNEALNKRLGTRVISVFFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="97651" PGL_stop="93922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97651" e_stop="97572"/>
            <exon e_start="94517" e_stop="94377"/>
            <exon e_start="94283" e_stop="93922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.962"/>
          <exon-intron don_prob="0.327" acc_prob="0.818" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="97651" e_stop="97572" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="97571" i_stop="94518" i_length="3054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94517" e_stop="94377" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.327" acc_prob="0.818">
            <gDNA_intron_boundary i_start="94376" i_stop="94284" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94283" e_stop="93922" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97651" stop="97572"/>
              <exon start="94517" stop="94377"/>
              <exon start="94283" stop="93922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTTTACAACAACACTGCTTTTTTGGATCTTCACAACAAAACTGGAAGTCGATATGGCGGTGGCACTATCCATATTAAG : GTCAACAATGCACACAGTTATTCTTGTATGGACCTTTACATCTTTGCGACCCCATATCGCGTGACATGGGATTACTACGCTTTATCTCGTGAACATACTGTTCAAATCAAAGAATGGGAGTCTCAAGCTGAGTTAGAATAT : GTGAAGCGCAAAGGAGTCTCAATTTTCCTTATGCAAGCAGGAACGTTAGGAACCCTTAGAGCACTATGGGATGTTTTCCCTTTGTTCACAAACACTGGATGGGGTGAAAACTCAAATATCAGATTTCTGAAGAAACACATGGGTGCTTCTTTTGACCAACGTCCTCAACCGTGGGTTAGCAACCTTACCGTTGAAGACATACATTCTGGTGATTTTCTTGCAATATCAAAAATTAGAGGGCGTTGGGGTGGTTTTGAAACATTAGAAAAATGGGTATCTGGAACTTATGCTGGCCATAGTGCTATTTGCTTGAGGGATGCTGAAGGAAAGCTGTGGGTTGGAGAATCTGGACATGAGAATGA</gDNA_template>
            <first_frame> A  F  T  T  T  L  L  F  W  I  F  T  T  K  L  E  V  D  M  A  V  A  L  S  I  L  R :   S  T  M  H  T  V  I  L  V  W  T  F  T  S  L  R  P  H  I  A  *  H  G  I  T  T  L  Y  L  V  N  I  L  F  K  S  K  N  G  S  L  K  L  S  *  N  M :   *  S  A  K  E  S  Q  F  S  L  C  K  Q  E  R  *  E  P  L  E  H  Y  G  M  F  S  L  C  S  Q  T  L  D  G  V  K  T  Q  I  S  D  F  *  R  N  T  W  V  L  L  L  T  N  V  L  N  R  G  L  A  T  L  P  L  K  T  Y  I  L  V  I  F  L  Q  Y  Q  K  L  E  G  V  G  V  V  L  K  H  *  K  N  G  Y  L  E  L  M  L  A  I  V  L  F  A  *  G  M  L  K  E  S  C  G  L  E  N  L  D  M  R  M  </first_frame>
            <second_frame>  L  L  Q  Q  H  C  F  F  G  S  S  Q  Q  N  W  K  S  I  W  R  W  H  Y  P  Y  *   : G  Q  Q  C  T  Q  L  F  L  Y  G  P  L  H  L  C  D  P  I  S  R  D  M  G  L  L  R  F  I  S  *  T  Y  C  S  N  Q  R  M  G  V  S  S  *  V  R  I   : C  E  A  Q  R  S  L  N  F  P  Y  A  S  R  N  V  R  N  P  *  S  T  M  G  C  F  P  F  V  H  K  H  W  M  G  *  K  L  K  Y  Q  I  S  E  E  T  H  G  C  F  F  *  P  T  S  S  T  V  G  *  Q  P  Y  R  *  R  H  T  F  W  *  F  S  C  N  I  K  N  *  R  A  L  G  W  F  *  N  I  R  K  M  G  I  W  N  L  C  W  P  *  C  Y  L  L  E  G  C  *  R  K  A  V  G  W  R  I  W  T  *  E  * </second_frame>
            <third_frame>   F  Y  N  N  T  A  F  L  D  L  H  N  K  T  G  S  R  Y  G  G  G  T  I  H  I  K  :  V  N  N  A  H  S  Y  S  C  M  D  L  Y  I  F  A  T  P  Y  R  V  T  W  D  Y  Y  A  L  S  R  E  H  T  V  Q  I  K  E  W  E  S  Q  A  E  L  E  Y  :  V  K  R  K  G  V  S  I  F  L  M  Q  A  G  T  L  G  T  L  R  A  L  W  D  V  F  P  L  F  T  N  T  G  W  G  E  N  S  N  I  R  F  L  K  K  H  M  G  A  S  F  D  Q  R  P  Q  P  W  V  S  N  L  T  V  E  D  I  H  S  G  D  F  L  A  I  S  K  I  R  G  R  W  G  G  F  E  T  L  E  K  W  V  S  G  T  Y  A  G  H  S  A  I  C  L  R  D  A  E  G  K  L  W  V  G  E  S  G  H  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97649" stop="97572"/>
                    <exon start="94517" stop="94377"/>
                    <exon start="94283" stop="93924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYNNTAFLDLHNKTGSRYGGGTIHIKVNNAHSYSCMDLYIFATPYRVTWDYYALSREHTVQIKEWESQAELEYVKRKGVSIFLMQAGTLGTLRALWDVFPLFTNTGWGENSNIRFLKKHMGASFDQRPQPWVSNLTVEDIHSGDFLAISKIRGRWGGFETLEKWVSGTYAGHSAICLRDAEGKLWVGESGHEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="105852" PGL_stop="98887"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105852" e_stop="105531"/>
            <exon e_start="103285" e_stop="103158"/>
            <exon e_start="101676" e_stop="101455"/>
            <exon e_start="100992" e_stop="100537"/>
            <exon e_start="99950" e_stop="99753"/>
            <exon e_start="99661" e_stop="99524"/>
            <exon e_start="99404" e_stop="98887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.984"/>
          <exon-intron don_prob="0.891" acc_prob="0.995" e_score="0.992"/>
          <exon-intron don_prob="0.888" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.034" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="105852" e_stop="105531" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="105530" i_stop="103286" i_length="2245"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="103285" e_stop="103158" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103157" i_stop="101677" i_length="1481"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101676" e_stop="101455" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.938">
            <gDNA_intron_boundary i_start="101454" i_stop="100993" i_length="462"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100992" e_stop="100537" e_length="456"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.034">
            <gDNA_intron_boundary i_start="100536" i_stop="99951" i_length="586"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99950" e_stop="99753" e_length="198"/>
          </exon>
          <intron i_serial="5" don_prob="0.586" acc_prob="0.987">
            <gDNA_intron_boundary i_start="99752" i_stop="99662" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99661" e_stop="99524" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="99523" i_stop="99405" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="99404" e_stop="98887" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105852" stop="105531"/>
              <exon start="103285" stop="103158"/>
              <exon start="101676" stop="101455"/>
              <exon start="100992" stop="100832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100879" stop="100537"/>
              <exon start="99950" stop="99753"/>
              <exon start="99661" stop="99524"/>
              <exon start="99404" stop="98887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCACTGTGGACTTAACAACGGCAAAGAATATGAAAATGGAGAAGAATAATGGCAAAGAGGAGTAATGAATACGTCAATGCAGCTGCGGCAACAAGTTTATAGATAGGTTTGAATAAAGGATCCATGTAATCTGAGGGCATCCCAATTTCCAGTCTTCTGTATACCACATAAAGGAACGACTGGAGAAAACAACAATCAATTTTTTTTATTTTTTTTTACTGAATCAATCGATTCCAAAATGATCGGTTGGTTTAAGCAGTTACATACTGCTTTTGGGTTTTCCTTTCTATGGCTTGTTTGCCTCATTTACTTCACACAG : GGGTTCAGATCTTTTGTCTGGACTGCAGTTTCATATCAGTTGAAAGACAACTTGAAGCTATCACCATCAGCCTCCCAATTTGTCACTTCAATAGCATTCTTTCCGTGGAGCATAAAACCTTTATATGG : GATATTATCTGATTGCTTTCCAATTAGAGGAAGGAAAAGAGTCCCCTACCTTATGCTGGCAACTTTGCTTTCGCTGTTGCCATGGCTCATTTTAGGGTTAAGTGATTTCCTGAGAAATACGAGGACAGAACTCATGATTCTTTTGACACTGCAGAACCTGGGTTCTGCAATGGCTGATGTTGTAATTGACGCAATGATCGCTGAGGCAGTAAGATTTGAGAG : GGCATCATTTGCTGGTGATCTTCAGTCAGTATCTTGGCTGTCTATGGCATTCGGAGGAATCTGTGGTAGTTTGCTGGGAGGATATGCATTAGACAATATACGGATAGATATGATTTTCCTCCTTTTCTCTGTTTTACCTGCTTTACAGCTCTTTTCGTGTGGTTTGGTTGAGGAGGGTTCTGTACAAGGTAAAGCATTACCCGAAGGTTCTGCATTAAATGGTTCTGATATGACGAGTGGAATTGTTGATGAAGAAAATAAATTCTCTGGTGAAAAATCAAAAGTTAGTACTTTGAGGAGAAAGAAGAGCCAGAATAATACAAAAAGAGTGCCAACAACGGAAAGTAAATTTCAGGCTCCTGACAAAAAGGGATCATCATTGTCTCCGTGGTATCAATCACTGAAAATGGCCACTTCCACATTATTTAGGGCGTTCCGCCAGCCAGCCATTTTGAG : ACCAATGGCTTGGTTCTTTTTGGCTCATGTGACAGTTCCAAATCTCTCGACGGTTATGTTCTATTATCAGACAGAGTTCTTAAAACTGGAGGCATCTTTCCTTGGAACAGCACGTGTTCTTGGATGGTTGAGTCTCATGATCGGGACCTTGACTTACAATCGCTATTTAAAAAGGATGAGGTTGCGGCATATTCTCAT : GTTTACTCAAGTTTGCTTGGCCATTCTGACCATTCTAGATATGGTTTTGGTTTCTCGAGCTAATGTTTCATTAGGTATCTCAGACAAGGTTACAGTGCTATTTGGTTCTGCCCTTTCTGATGGCATCAATCAATTCAA : GTTCATGCCCTTTCTTATCTTATCGGGGCAGCTTTGTCCTCCAGGGGTTGAAGGAACTTTATTTGCATTGTTCATGTCAATAAACAACTTAGGTTCTACGGTGGGATCCTTTGTAGGAGCAGGGTTGGCTTCAGTTCTAAACATCTCCTCAGGATCTTTTGACAATCTCTTCTTAGGCATTGGTATACAGGTTCTCTGCACTTTCATCCCAGTGGCCTTCCTTTTCTTGATTCCAAAGGAAGCTACAGGAATATCAGCATAGTTCACAGATCATACATGCAGCTTACAGATTAGACAACAAAGGTGTTTTTTTCCTTTATGATAGACAGATACTCTTTTTTTGGATTTAGATGAGCTTAAATAGAGCAACACAGTCGATGAAAATTCATTTAGTCGACCTTAACTTGCTTGAGATTGAGGCGTAGTAGTTGAATGGATACTTGTAGCAATCCTAACCTCTGCTTACTAACATCTGTAATAGTAAACATCCAGAAGTTTTATCTGATATCATTGTTCAT</gDNA_template>
            <first_frame> G  P  L  W  T  *  Q  R  Q  R  I  *  K  W  R  R  I  M  A  K  R  S  N  E  Y  V  N  A  A  A  A  T  S  L  *  I  G  L  N  K  G  S  M  *  S  E  G  I  P  I  S  S  L  L  Y  T  T  *  R  N  D  W  R  K  Q  Q  S  I  F  F  I  F  F  Y  *  I  N  R  F  Q  N  D  R  L  V  *  A  V  T  Y  C  F  W  V  F  L  S  M  A  C  L  P  H  L  L  H  T   : G  V  Q  I  F  C  L  D  C  S  F  I  S  V  E  R  Q  L  E  A  I  T  I  S  L  P  I  C  H  F  N  S  I  L  S  V  E  H  K  T  F  I  W  :  D  I  I  *  L  L  S  N  *  R  K  E  K  S  P  L  P  Y  A  G  N  F  A  F  A  V  A  M  A  H  F  R  V  K  *  F  P  E  K  Y  E  D  R  T  H  D  S  F  D  T  A  E  P  G  F  C  N  G  *  C  C  N  *  R  N  D  R  *  G  S  K  I  *  E  :  G  I  I  C  W  *  S  S  V  S  I  L  A  V  Y  G  I  R  R  N  L  W  *  F  A  G  R  I  C  I  R  Q  Y  T  D  R  Y  D  F  P  P  F  L  C  F  T  C  F  T  A  L  F  V  W  F  G  *  G  G  F  C  T  R  *  S  I  T  R  R  F  C  I  K  W  F  *  Y  D  E  W  N  C  *  *  R  K  *  I  L  W  *  K  I  K  S  *  Y  F  E  E  K  E  E  P  E  *  Y  K  K  S  A  N  N  G  K  *  I  S  G  S  *  Q  K  G  I  I  I  V  S  V  V  S  I  T  E  N  G  H  F  H  I  I  *  G  V  P  P  A  S  H  F  E  :  T  N  G  L  V  L  F  G  S  C  D  S  S  K  S  L  D  G  Y  V  L  L  S  D  R  V  L  K  T  G  G  I  F  P  W  N  S  T  C  S  W  M  V  E  S  H  D  R  D  L  D  L  Q  S  L  F  K  K  D  E  V  A  A  Y  S  H  :  V  Y  S  S  L  L  G  H  S  D  H  S  R  Y  G  F  G  F  S  S  *  C  F  I  R  Y  L  R  Q  G  Y  S  A  I  W  F  C  P  F  *  W  H  Q  S  I  Q  :  V  H  A  L  S  Y  L  I  G  A  A  L  S  S  R  G  *  R  N  F  I  C  I  V  H  V  N  K  Q  L  R  F  Y  G  G  I  L  C  R  S  R  V  G  F  S  S  K  H  L  L  R  I  F  *  Q  S  L  L  R  H  W  Y  T  G  S  L  H  F  H  P  S  G  L  P  F  L  D  S  K  G  S  Y  R  N  I  S  I  V  H  R  S  Y  M  Q  L  T  D  *  T  T  K  V  F  F  S  F  M  I  D  R  Y  S  F  F  G  F  R  *  A  *  I  E  Q  H  S  R  *  K  F  I  *  S  T  L  T  C  L  R  L  R  R  S  S  *  M  D  T  C  S  N  P  N  L  C  L  L  T  S  V  I  V  N  I  Q  K  F  Y  L  I  S  L  F   </first_frame>
            <second_frame>  V  H  C  G  L  N  N  G  K  E  Y  E  N  G  E  E  *  W  Q  R  G  V  M  N  T  S  M  Q  L  R  Q  Q  V  Y  R  *  V  *  I  K  D  P  C  N  L  R  A  S  Q  F  P  V  F  C  I  P  H  K  G  T  T  G  E  N  N  N  Q  F  F  L  F  F  F  T  E  S  I  D  S  K  M  I  G  W  F  K  Q  L  H  T  A  F  G  F  S  F  L  W  L  V  C  L  I  Y  F  T  Q  :  G  F  R  S  F  V  W  T  A  V  S  Y  Q  L  K  D  N  L  K  L  S  P  S  A  S  Q  F  V  T  S  I  A  F  F  P  W  S  I  K  P  L  Y  G :   I  L  S  D  C  F  P  I  R  G  R  K  R  V  P  Y  L  M  L  A  T  L  L  S  L  L  P  W  L  I  L  G  L  S  D  F  L  R  N  T  R  T  E  L  M  I  L  L  T  L  Q  N  L  G  S  A  M  A  D  V  V  I  D  A  M  I  A  E  A  V  R  F  E  R :   A  S  F  A  G  D  L  Q  S  V  S  W  L  S  M  A  F  G  G  I  C  G  S  L  L  G  G  Y  A  L  D  N  I  R  I  D  M  I  F  L  L  F  S  V  L  P  A  L  Q  L  F  S  C  G  L  V  E  E  G  S  V  Q  G  K  A  L  P  E  G  S  A  L  N  G  S  D  M  T  S  G  I  V  D  E  E  N  K  F  S  G  E  K  S  K  V  S  T  L  R  R  K  K  S  Q  N  N  T  K  R  V  P  T  T  E  S  K  F  Q  A  P  D  K  K  G  S  S  L  S  P  W  Y  Q  S  L  K  M  A  T  S  T  L  F  R  A  F  R  Q  P  A  I  L  R :   P  M  A  W  F  F  L  A  H  V  T  V  P  N  L  S  T  V  M  F  Y  Y  Q  T  E  F  L  K  L  E  A  S  F  L  G  T  A  R  V  L  G  W  L  S  L  M  I  G  T  L  T  Y  N  R  Y  L  K  R  M  R  L  R  H  I  L  M :   F  T  Q  V  C  L  A  I  L  T  I  L  D  M  V  L  V  S  R  A  N  V  S  L  G  I  S  D  K  V  T  V  L  F  G  S  A  L  S  D  G  I  N  Q  F  K :   F  M  P  F  L  I  L  S  G  Q  L  C  P  P  G  V  E  G  T  L  F  A  L  F  M  S  I  N  N  L  G  S  T  V  G  S  F  V  G  A  G  L  A  S  V  L  N  I  S  S  G  S  F  D  N  L  F  L  G  I  G  I  Q  V  L  C  T  F  I  P  V  A  F  L  F  L  I  P  K  E  A  T  G  I  S  A  *  F  T  D  H  T  C  S  L  Q  I  R  Q  Q  R  C  F  F  P  L  *  *  T  D  T  L  F  L  D  L  D  E  L  K  *  S  N  T  V  D  E  N  S  F  S  R  P  *  L  A  *  D  *  G  V  V  V  E  W  I  L  V  A  I  L  T  S  A  Y  *  H  L  *  *  *  T  S  R  S  F  I  *  Y  H  C  S  </second_frame>
            <third_frame>   S  T  V  D  L  T  T  A  K  N  M  K  M  E  K  N  N  G  K  E  E  *  *  I  R  Q  C  S  C  G  N  K  F  I  D  R  F  E  *  R  I  H  V  I  *  G  H  P  N  F  Q  S  S  V  Y  H  I  K  E  R  L  E  K  T  T  I  N  F  F  Y  F  F  L  L  N  Q  S  I  P  K  *  S  V  G  L  S  S  Y  I  L  L  L  G  F  P  F  Y  G  L  F  A  S  F  T  S  H  R :   G  S  D  L  L  S  G  L  Q  F  H  I  S  *  K  T  T  *  S  Y  H  H  Q  P  P  N  L  S  L  Q  *  H  S  F  R  G  A  *  N  L  Y  M   : G  Y  Y  L  I  A  F  Q  L  E  E  G  K  E  S  P  T  L  C  W  Q  L  C  F  R  C  C  H  G  S  F  *  G  *  V  I  S  *  E  I  R  G  Q  N  S  *  F  F  *  H  C  R  T  W  V  L  Q  W  L  M  L  *  L  T  Q  *  S  L  R  Q  *  D  L  R   : G  H  H  L  L  V  I  F  S  Q  Y  L  G  C  L  W  H  S  E  E  S  V  V  V  C  W  E  D  M  H  *  T  I  Y  G  *  I  *  F  S  S  F  S  L  F  Y  L  L  Y  S  S  F  R  V  V  W  L  R  R  V  L  Y  K  V  K  H  Y  P  K  V  L  H  *  M  V  L  I  *  R  V  E  L  L  M  K  K  I  N  S  L  V  K  N  Q  K  L  V  L  *  G  E  R  R  A  R  I  I  Q  K  E  C  Q  Q  R  K  V  N  F  R  L  L  T  K  R  D  H  H  C  L  R  G  I  N  H  *  K  W  P  L  P  H  Y  L  G  R  S  A  S  Q  P  F  *   : D  Q  W  L  G  S  F  W  L  M  *  Q  F  Q  I  S  R  R  L  C  S  I  I  R  Q  S  S  *  N  W  R  H  L  S  L  E  Q  H  V  F  L  D  G  *  V  S  *  S  G  P  *  L  T  I  A  I  *  K  G  *  G  C  G  I  F  S   : C  L  L  K  F  A  W  P  F  *  P  F  *  I  W  F  W  F  L  E  L  M  F  H  *  V  S  Q  T  R  L  Q  C  Y  L  V  L  P  F  L  M  A  S  I  N  S   : S  S  C  P  F  L  S  Y  R  G  S  F  V  L  Q  G  L  K  E  L  Y  L  H  C  S  C  Q  *  T  T  *  V  L  R  W  D  P  L  *  E  Q  G  W  L  Q  F  *  T  S  P  Q  D  L  L  T  I  S  S  *  A  L  V  Y  R  F  S  A  L  S  S  Q  W  P  S  F  S  *  F  Q  R  K  L  Q  E  Y  Q  H  S  S  Q  I  I  H  A  A  Y  R  L  D  N  K  G  V  F  F  L  Y  D  R  Q  I  L  F  F  W  I  *  M  S  L  N  R  A  T  Q  S  M  K  I  H  L  V  D  L  N  L  L  E  I  E  A  *  *  L  N  G  Y  L  *  Q  S  *  P  L  L  T  N  I  C  N  S  K  H  P  E  V  L  S  D  I  I  V  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105737" stop="105531"/>
                    <exon start="103285" stop="103158"/>
                    <exon start="101676" stop="101455"/>
                    <exon start="100992" stop="100537"/>
                    <exon start="99950" stop="99753"/>
                    <exon start="99661" stop="99524"/>
                    <exon start="99404" stop="99143"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKDPCNLRASQFPVFCIPHKGTTGENNNQFFLFFFTESIDSKMIGWFKQLHTAFGFSFLWLVCLIYFTQGFRSFVWTAVSYQLKDNLKLSPSASQFVTSIAFFPWSIKPLYGILSDCFPIRGRKRVPYLMLATLLSLLPWLILGLSDFLRNTRTELMILLTLQNLGSAMADVVIDAMIAEAVRFERASFAGDLQSVSWLSMAFGGICGSLLGGYALDNIRIDMIFLLFSVLPALQLFSCGLVEEGSVQGKALPEGSALNGSDMTSGIVDEENKFSGEKSKVSTLRRKKSQNNTKRVPTTESKFQAPDKKGSSLSPWYQSLKMATSTLFRAFRQPAILRPMAWFFLAHVTVPNLSTVMFYYQTEFLKLEASFLGTARVLGWLSLMIGTLTYNRYLKRMRLRHILMFTQVCLAILTILDMVLVSRANVSLGISDKVTVLFGSALSDGINQFKFMPFLILSGQLCPPGVEGTLFALFMSINNLGSTVGSFVGAGLASVLNISSGSFDNLFLGIGIQVLCTFIPVAFLFLIPKEATGISA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="109851" PGL_stop="106255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109851" e_stop="109666"/>
            <exon e_start="106714" e_stop="106255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="0.973"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="109851" e_stop="109666" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="109665" i_stop="106715" i_length="2951"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="106714" e_stop="106255" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109851" stop="109666"/>
              <exon start="106714" stop="106255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTCCAGAATCCAGTGAGGCAAGCAACAATGGAGTCAAGTTGGTGTAAGGTATTACTTTACCTAACTCTAATTACCAATTTGACCCTACAAGGTGTAAGAGGTTGGACTGGAGAGATTCATGGAAGAGTTGTTTGTGATGTTTGTGCTGATTCCTCTGTTGGTCCGGAAGACCATGTTCTACAAG : GTGCAGAGGTTGCAGTTCTTTGCATTACGAAGACTGGGGAAGTTCTGAATTATCAGGCATTCACAGACTCCAAGGGGATATATAGAGTGGCTGAGACAATGCCAGCGAGTGATCGTTGGGATGCATGCCTAGCAAGACCTATCAGCAGCTTCCACGAGCACTGTACACGTCTGGGAGATAGCAACTCCGGGGTGAAGTTCAGCTACAATCATCCTTCAGGATATTCACACACAGTCAGACCATTTGTATATCGTCCCACCAACGTTCCAACTTACTGCATCTAATAAATATATATAATGTATCATATGGTACAAGCTATGTAAGAAAGCTTGTTTCTGTTATTGTATGTATCCTTGGTTGCCTTGATTTTATTGAAAATCCAGTAGCAATCTGGATATATCTGGTAACACTTGTCTGTTCAATTTACTCAGATAAATTGATGATTTGATTAGTGTAAAGA</gDNA_template>
            <first_frame> S  S  R  I  Q  *  G  K  Q  Q  W  S  Q  V  G  V  R  Y  Y  F  T  *  L  *  L  P  I  *  P  Y  K  V  *  E  V  G  L  E  R  F  M  E  E  L  F  V  M  F  V  L  I  P  L  L  V  R  K  T  M  F  Y  K  :  V  Q  R  L  Q  F  F  A  L  R  R  L  G  K  F  *  I  I  R  H  S  Q  T  P  R  G  Y  I  E  W  L  R  Q  C  Q  R  V  I  V  G  M  H  A  *  Q  D  L  S  A  A  S  T  S  T  V  H  V  W  E  I  A  T  P  G  *  S  S  A  T  I  I  L  Q  D  I  H  T  Q  S  D  H  L  Y  I  V  P  P  T  F  Q  L  T  A  S  N  K  Y  I  *  C  I  I  W  Y  K  L  C  K  K  A  C  F  C  Y  C  M  Y  P  W  L  P  *  F  Y  *  K  S  S  S  N  L  D  I  S  G  N  T  C  L  F  N  L  L  R  *  I  D  D  L  I  S  V  K  </first_frame>
            <second_frame>  R  P  E  S  S  E  A  S  N  N  G  V  K  L  V  *  G  I  T  L  P  N  S  N  Y  Q  F  D  P  T  R  C  K  R  L  D  W  R  D  S  W  K  S  C  L  *  C  L  C  *  F  L  C  W  S  G  R  P  C  S  T  R :   C  R  G  C  S  S  L  H  Y  E  D  W  G  S  S  E  L  S  G  I  H  R  L  Q  G  D  I  *  S  G  *  D  N  A  S  E  *  S  L  G  C  M  P  S  K  T  Y  Q  Q  L  P  R  A  L  Y  T  S  G  R  *  Q  L  R  G  E  V  Q  L  Q  S  S  F  R  I  F  T  H  S  Q  T  I  C  I  S  S  H  Q  R  S  N  L  L  H  L  I  N  I  Y  N  V  S  Y  G  T  S  Y  V  R  K  L  V  S  V  I  V  C  I  L  G  C  L  D  F  I  E  N  P  V  A  I  W  I  Y  L  V  T  L  V  C  S  I  Y  S  D  K  L  M  I  *  L  V  *  R </second_frame>
            <third_frame>   V  Q  N  P  V  R  Q  A  T  M  E  S  S  W  C  K  V  L  L  Y  L  T  L  I  T  N  L  T  L  Q  G  V  R  G  W  T  G  E  I  H  G  R  V  V  C  D  V  C  A  D  S  S  V  G  P  E  D  H  V  L  Q   : G  A  E  V  A  V  L  C  I  T  K  T  G  E  V  L  N  Y  Q  A  F  T  D  S  K  G  I  Y  R  V  A  E  T  M  P  A  S  D  R  W  D  A  C  L  A  R  P  I  S  S  F  H  E  H  C  T  R  L  G  D  S  N  S  G  V  K  F  S  Y  N  H  P  S  G  Y  S  H  T  V  R  P  F  V  Y  R  P  T  N  V  P  T  Y  C  I  *  *  I  Y  I  M  Y  H  M  V  Q  A  M  *  E  S  L  F  L  L  L  Y  V  S  L  V  A  L  I  L  L  K  I  Q  *  Q  S  G  Y  I  W  *  H  L  S  V  Q  F  T  Q  I  N  *  *  F  D  *  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109849" stop="109666"/>
                    <exon start="106714" stop="106431"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQNPVRQATMESSWCKVLLYLTLITNLTLQGVRGWTGEIHGRVVCDVCADSSVGPEDHVLQGAEVAVLCITKTGEVLNYQAFTDSKGIYRVAETMPASDRWDACLARPISSFHEHCTRLGDSNSGVKFSYNHPSGYSHTVRPFVYRPTNVPTYCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="121737" PGL_stop="117835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121737" e_stop="121627"/>
            <exon e_start="120235" e_stop="119664"/>
            <exon e_start="119517" e_stop="119227"/>
            <exon e_start="118299" e_stop="117835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="121737" e_stop="121627" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="121626" i_stop="120236" i_length="1391"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="120235" e_stop="119664" e_length="572"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="119663" i_stop="119518" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119517" e_stop="119227" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="119226" i_stop="118300" i_length="927"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="118299" e_stop="117835" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121737" stop="121627"/>
              <exon start="120235" stop="119664"/>
              <exon start="119517" stop="119227"/>
              <exon start="118299" stop="117835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG : GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG : GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG : ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAAATGGTAGACATATGTGAATGACATGCTTATATTTGGTATGAGTTTAAAATATTGTGAAA</gDNA_template>
            <first_frame> N  N  W  L  T  A  D  V  K  *  E  H  N  G  L  L  Q  F  G  G  P  T  I  T  S  N  F  G  S  I  T  I  S  V  K  T  Q  :  G  V  V  C  E  S  G  V  F  L  L  H  *  M  S  N  I  W  *  G  *  G  *  T  C  H  F  W  S  C  G  I  N  P  I  S  L  S  K  *  H  G  *  Y  P  Y  Y  I  F  S  P  N  S  R  G  K  S  G  T  A  H  M  Y  L  V  D  L  I  E  *  L  *  K  L  K  V  R  N  D  A  F  M  T  F  G  N  A  F  C  T  N  *  L  K  E  K  I  S  E  I  L  L  N  F  Q  A  Y  L  L  S  I  G  R  L  L  Q  Q  T  S  L  I  T  T  V  Y  F  N  L  Q  M  S  R  T  A  C  Q  H  F  L  W  R  R  E  M  M  V  E  S  *  *  *  C  E  A  *  Q  R  K  T  L  I  Q  S  G  I  L  E  D  G  S  K  *  L  P  L  N  V  D  L  L  D  K  V  K  K  I  V  I  A  H  R :   A  F  T  L  L  I  *  M  H  L  L  S  K  *  T  H  F  A  F  M  E  D  L  M  A  T  S  Q  A  *  G  E  G  F  N  A  L  M  R  R  I  R  R  K  T  R  L  I  *  K  G  K  K  *  L  G  R  S  V  T  L  G  F  L  H  C  R  S  S  L  R  S  L  M  M  *  L  Q  L  I  M  I  T  S  H  W  F  L  E  L  K  I  K  A  S  F  R :   Y  T  R  G  R  L  I  Q  D  Q  N  L  S  T  G  T  R  T  T  *  Q  V  S  D  M  I  Q  A  K  S  M  T  L  H  K  T  V  R  *  R  L  P  V  S  Y  Q  Q  *  C  P  C  P  E  C  N  K  L  *  T  T  N  F  L  I  *  S  *  D  A  L  F  N  S  T  H  S  Q  A  F  S  K  L  S  R  N  L  L  N  Y  I  S  S  S  K  S  T  *  Y  I  T  C  I  V  H  S  S  Y  D  *  W  L  *  H  I  E  L  K  F  N  Y  E  *  H  T  L  Q  K  N  L  C  V  T  I  G  K  M  V  D  I  C  E  *  H  A  Y  I  W  Y  E  F  K  I  L  *   </first_frame>
            <second_frame>  I  I  G  L  Q  L  M  *  S  K  N  T  M  V  C  Y  N  L  V  A  Q  Q  S  P  P  I  L  V  Q  S  Q  Y  P  S  K  P  R :   G  L  S  V  K  V  V  S  S  C  C  T  E  C  P  I  F  G  K  V  E  V  K  H  V  I  S  G  L  A  A  S  I  L  F  L  S  Q  S  S  M  V  S  I  L  T  I  F  S  L  L  I  P  E  A  K  V  V  L  H  I  C  I  W  L  I  *  *  N  S  C  E  S  *  R  S  G  M  M  L  S  *  L  L  G  M  H  S  V  R  I  N  L  K  K  K  F  Q  K  F  C  *  T  F  K  R  I  F  F  L  L  V  G  F  C  S  R  P  P  S  L  Q  Q  C  I  S  T  C  K  C  R  G  Q  H  A  N  T  S  F  G  E  G  K  *  W  W  K  A  D  D  D  A  R  H  D  S  E  R  L  *  S  N  Q  V  F  W  K  M  V  R  S  S  F  P  *  T  W  I  C  W  T  R  S  R  R  L  S  L  H  T   : G  H  L  H  C  *  Y  E  C  T  C  Y  P  S  R  H  I  L  R  S  W  R  T  *  W  L  H  H  R  H  K  G  K  G  S  M  P  *  *  G  G  *  G  E  R  R  D  *  S  R  K  A  R  N  D  *  G  E  V  L  P  *  V  S  Y  T  A  V  H  P  *  G  A  L  *  C  N  C  N  *  L  *  *  L  R  T  G  F  W  S  *  R  *  K  L  R  S   : D  I  L  E  D  A  *  S  R  T  R  I  Y  R  Q  V  Q  E  L  L  S  K  F  R  I  *  S  K  Q  N  Q  *  H  S  T  R  L  *  G  K  D  Y  Q  S  A  I  S  N  D  V  H  V  R  N  A  T  S  S  K  Q  P  I  S  *  F  R  V  E  T  P  C  S  I  Q  P  I  H  K  R  F  R  N  S  Q  E  T  C  *  T  I  F  Q  V  V  N  P  L  D  I  L  L  V  *  C  I  V  L  M  T  S  G  C  N  T  L  N  *  S  S  T  M  N  D  I  H  S  R  K  I  C  V  L  L  L  G  K  W  *  T  Y  V  N  D  M  L  I  F  G  M  S  L  K  Y  C  E  </second_frame>
            <third_frame>   *  L  A  Y  S  *  C  E  V  R  T  Q  W  F  A  T  I  W  W  P  N  N  H  L  Q  F  W  F  N  H  N  I  R  Q  N  P   : G  G  C  L  *  K  W  C  L  P  A  A  L  N  V  Q  Y  L  V  R  L  R  L  N  M  S  F  L  V  L  R  H  Q  S  Y  F  S  L  K  V  A  W  L  V  S  L  L  Y  F  L  S  *  F  Q  R  Q  K  W  Y  C  T  Y  V  F  G  *  F  D  R  I  V  V  K  A  E  G  P  E  *  C  F  H  D  F  W  E  C  I  L  Y  E  L  T  *  R  K  N  F  R  N  F  V  K  L  S  S  V  S  S  F  Y  W  *  A  F  A  A  D  L  P  H  Y  N  S  V  F  Q  L  A  N  V  A  D  S  M  P  T  L  P  L  E  K  G  N  D  G  G  K  L  M  M  M  R  G  M  T  A  K  D  F  D  P  I  R  Y  S  G  R  W  F  E  V  A  S  L  K  R  G  F  A  G  Q  G  Q  E  D  C  H  C  T  Q  :  G  I  Y  T  V  D  M  N  A  P  A  I  Q  V  D  T  F  C  V  H  G  G  P  D  G  Y  I  T  G  I  R  G  R  V  Q  C  L  N  E  E  D  K  E  K  D  E  T  D  L  E  R  Q  E  M  I  R  E  K  C  Y  L  R  F  P  T  L  P  F  I  P  K  E  P  Y  D  V  I  A  T  D  Y  D  N  F  A  L  V  S  G  A  K  D  K  S  F  V  Q  :  I  Y  S  R  T  P  N  P  G  P  E  F  I  D  R  Y  K  N  Y  L  A  S  F  G  Y  D  P  S  K  I  N  D  T  P  Q  D  C  E  V  K  T  T  S  Q  L  S  A  M  M  S  M  S  G  M  Q  Q  A  L  N  N  Q  F  P  D  L  E  L  R  R  P  V  Q  F  N  P  F  T  S  V  F  E  T  L  K  K  L  A  E  L  Y  F  K  *  *  I  H  L  I  Y  Y  L  Y  S  A  *  F  L  *  L  V  A  V  T  H  *  T  K  V  Q  L  *  M  T  Y  T  P  E  K  F  V  C  Y  Y  W  E  N  G  R  H  M  *  M  T  C  L  Y  L  V  *  V  *  N  I  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119897" stop="119664"/>
                    <exon start="119517" stop="119227"/>
                    <exon start="118299" stop="118021"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFAADLPHYNSVFQLANVADSMPTLPLEKGNDGGKLMMMRGMTAKDFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGIYTVDMNAPAIQVDTFCVHGGPDGYITGIRGRVQCLNEEDKEKDETDLERQEMIREKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFVQIYSRTPNPGPEFIDRYKNYLASFGYDPSKINDTPQDCEVKTTSQLSAMMSMSGMQQALNNQFPDLELRRPVQFNPFTSVFETLKKLAELYFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121712" stop="121627"/>
                    <exon start="120235" stop="120034"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNTMVCYNLVAQQSPPILVQSQYPSKPRGLSVKVVSSCCTECPIFGKVEVKHVISGLAASILFLSQSSMVSILTIFSLLIPEAKVVLHICIWLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121737" e_stop="121627"/>
            <exon e_start="120235" e_stop="120112"/>
            <exon e_start="119897" e_stop="119664"/>
            <exon e_start="119517" e_stop="119227"/>
            <exon e_start="118299" e_stop="118033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121737" e_stop="121627" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="121626" i_stop="120236" i_length="1391"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120235" e_stop="120112" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="120111" i_stop="119898" i_length="214"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119897" e_stop="119664" e_length="234"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="119663" i_stop="119518" i_length="146"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119517" e_stop="119227" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="119226" i_stop="118300" i_length="927"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="118299" e_stop="118033" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121737" stop="121627"/>
              <exon start="120235" stop="120112"/>
              <exon start="119897" stop="119664"/>
              <exon start="119517" stop="119227"/>
              <exon start="118299" stop="118033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG : GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG : GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG : GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG : ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTA</gDNA_template>
            <first_frame> N  N  W  L  T  A  D  V  K  *  E  H  N  G  L  L  Q  F  G  G  P  T  I  T  S  N  F  G  S  I  T  I  S  V  K  T  Q  :  G  V  V  C  E  S  G  V  F  L  L  H  *  M  S  N  I  W  *  G  *  G  *  T  C  H  F  W  S  C  G  I  N  P  I  S  L  S  K  *  H   : G  F  C  S  R  P  P  S  L  Q  Q  C  I  S  T  C  K  C  R  G  Q  H  A  N  T  S  F  G  E  G  K  *  W  W  K  A  D  D  D  A  R  H  D  S  E  R  L  *  S  N  Q  V  F  W  K  M  V  R  S  S  F  P  *  T  W  I  C  W  T  R  S  R  R  L  S  L  H  T   : G  H  L  H  C  *  Y  E  C  T  C  Y  P  S  R  H  I  L  R  S  W  R  T  *  W  L  H  H  R  H  K  G  K  G  S  M  P  *  *  G  G  *  G  E  R  R  D  *  S  R  K  A  R  N  D  *  G  E  V  L  P  *  V  S  Y  T  A  V  H  P  *  G  A  L  *  C  N  C  N  *  L  *  *  L  R  T  G  F  W  S  *  R  *  K  L  R  S   : D  I  L  E  D  A  *  S  R  T  R  I  Y  R  Q  V  Q  E  L  L  S  K  F  R  I  *  S  K  Q  N  Q  *  H  S  T  R  L  *  G  K  D  Y  Q  S  A  I  S  N  D  V  H  V  R  N  A  T  S  S  K  Q  P  I  S  *  F  R  V  E  T  P  C  S  I  Q  P  I  H  K  R  F  R  N  S  Q  E  T  C  *  T  </first_frame>
            <second_frame>  I  I  G  L  Q  L  M  *  S  K  N  T  M  V  C  Y  N  L  V  A  Q  Q  S  P  P  I  L  V  Q  S  Q  Y  P  S  K  P  R :   G  L  S  V  K  V  V  S  S  C  C  T  E  C  P  I  F  G  K  V  E  V  K  H  V  I  S  G  L  A  A  S  I  L  F  L  S  Q  S  S  M  :  A  F  A  A  D  L  P  H  Y  N  S  V  F  Q  L  A  N  V  A  D  S  M  P  T  L  P  L  E  K  G  N  D  G  G  K  L  M  M  M  R  G  M  T  A  K  D  F  D  P  I  R  Y  S  G  R  W  F  E  V  A  S  L  K  R  G  F  A  G  Q  G  Q  E  D  C  H  C  T  Q  :  G  I  Y  T  V  D  M  N  A  P  A  I  Q  V  D  T  F  C  V  H  G  G  P  D  G  Y  I  T  G  I  R  G  R  V  Q  C  L  N  E  E  D  K  E  K  D  E  T  D  L  E  R  Q  E  M  I  R  E  K  C  Y  L  R  F  P  T  L  P  F  I  P  K  E  P  Y  D  V  I  A  T  D  Y  D  N  F  A  L  V  S  G  A  K  D  K  S  F  V  Q  :  I  Y  S  R  T  P  N  P  G  P  E  F  I  D  R  Y  K  N  Y  L  A  S  F  G  Y  D  P  S  K  I  N  D  T  P  Q  D  C  E  V  K  T  T  S  Q  L  S  A  M  M  S  M  S  G  M  Q  Q  A  L  N  N  Q  F  P  D  L  E  L  R  R  P  V  Q  F  N  P  F  T  S  V  F  E  T  L  K  K  L  A  E  L </second_frame>
            <third_frame>   *  L  A  Y  S  *  C  E  V  R  T  Q  W  F  A  T  I  W  W  P  N  N  H  L  Q  F  W  F  N  H  N  I  R  Q  N  P   : G  G  C  L  *  K  W  C  L  P  A  A  L  N  V  Q  Y  L  V  R  L  R  L  N  M  S  F  L  V  L  R  H  Q  S  Y  F  S  L  K  V  A  W :   L  L  Q  Q  T  S  L  I  T  T  V  Y  F  N  L  Q  M  S  R  T  A  C  Q  H  F  L  W  R  R  E  M  M  V  E  S  *  *  *  C  E  A  *  Q  R  K  T  L  I  Q  S  G  I  L  E  D  G  S  K  *  L  P  L  N  V  D  L  L  D  K  V  K  K  I  V  I  A  H  R :   A  F  T  L  L  I  *  M  H  L  L  S  K  *  T  H  F  A  F  M  E  D  L  M  A  T  S  Q  A  *  G  E  G  F  N  A  L  M  R  R  I  R  R  K  T  R  L  I  *  K  G  K  K  *  L  G  R  S  V  T  L  G  F  L  H  C  R  S  S  L  R  S  L  M  M  *  L  Q  L  I  M  I  T  S  H  W  F  L  E  L  K  I  K  A  S  F  R :   Y  T  R  G  R  L  I  Q  D  Q  N  L  S  T  G  T  R  T  T  *  Q  V  S  D  M  I  Q  A  K  S  M  T  L  H  K  T  V  R  *  R  L  P  V  S  Y  Q  Q  *  C  P  C  P  E  C  N  K  L  *  T  T  N  F  L  I  *  S  *  D  A  L  F  N  S  T  H  S  Q  A  F  S  K  L  S  R  N  L  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121712" stop="121627"/>
                    <exon start="120235" stop="120112"/>
                    <exon start="119897" stop="119664"/>
                    <exon start="119517" stop="119227"/>
                    <exon start="118299" stop="118033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNTMVCYNLVAQQSPPILVQSQYPSKPRGLSVKVVSSCCTECPIFGKVEVKHVISGLAASILFLSQSSMAFAADLPHYNSVFQLANVADSMPTLPLEKGNDGGKLMMMRGMTAKDFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGIYTVDMNAPAIQVDTFCVHGGPDGYITGIRGRVQCLNEEDKEKDETDLERQEMIREKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFVQIYSRTPNPGPEFIDRYKNYLASFGYDPSKINDTPQDCEVKTTSQLSAMMSMSGMQQALNNQFPDLELRRPVQFNPFTSVFETLKKLAEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="118043" PGL_stop="118228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118043" e_stop="118228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="118043" e_stop="118228" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118043" stop="118228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTCTTGAGAGTTTCGAAAACGCTTGTGAATGGGTTGAATTGAACAGGGCGTCTCAACTCTAAATCAGGAAATTGGTTGTTTAGAGCTTGTTGCATTCCGGACATGGACATCATTGCTGATAGCTGACTGGTAGTCTTTACCTCACAGTCTTGTGGAGTGTCATTGATTTTGCTTGGATCATAT</gDNA_template>
            <first_frame> S  F  L  R  V  S  K  T  L  V  N  G  L  N  *  T  G  R  L  N  S  K  S  G  N  W  L  F  R  A  C  C  I  P  D  M  D  I  I  A  D  S  *  L  V  V  F  T  S  Q  S  C  G  V  S  L  I  L  L  G  S  Y </first_frame>
            <second_frame>  V  S  *  E  F  R  K  R  L  *  M  G  *  I  E  Q  G  V  S  T  L  N  Q  E  I  G  C  L  E  L  V  A  F  R  T  W  T  S  L  L  I  A  D  W  *  S  L  P  H  S  L  V  E  C  H  *  F  C  L  D  H   </second_frame>
            <third_frame>   F  L  E  S  F  E  N  A  C  E  W  V  E  L  N  R  A  S  Q  L  *  I  R  K  L  V  V  *  S  L  L  H  S  G  H  G  H  H  C  *  *  L  T  G  S  L  Y  L  T  V  L  W  S  V  I  D  F  A  W  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0030P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="122236" PGL_stop="124000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122236" e_stop="122313"/>
            <exon e_start="123326" e_stop="124000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122236" e_stop="122313" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122314" i_stop="123325" i_length="1012"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="123326" e_stop="124000" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122236" stop="122313"/>
              <exon start="123326" stop="124000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG : GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGATGCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAAGGATTCCGTAGACCTTATTAGGGTCCTGG</gDNA_template>
            <first_frame> G  K  F  L  C  V  L  A  P  K  S  K  Q  N  G  K  V  V  R  R  Q  R  K  Y  F  Q  :  A  L  P  P  E  L  L  A  A  S  R  V  S  L  V  I  D  C  Y  S  G  *  W  L  F  V  V  Q  E  L  L  I  L  A  I  L  L  V  R  W  L  L  G  A  C  I  M  H  W  R  *  I  I  V  A  S  L  I  A  I  G  A  L  R  M  L  E  K  P  T  L  V  *  E  I  K  A  N  L  T  T  S  C  Y  L  N  I  L  K  L  V  L  Q  R  G  R  D  M  K  D  L  D  *  K  V  F  A  F  Y  H  L  H  V  S  L  L  E  L  L  L  P  A  A  C  L  L  I  I  L  R  K  R  N  R  L  Q  I  L  L  I  L  L  R  E  R  Y  T  *  S  *  I  R  D  H  F  I  C  L  I  L  R  K  Q  K  L  V  E  R  M  L  I  S  F  M  I  L  H  K  L  *  V  *  L  M  G  S  V  D  G  L  I  L  V  L  M  Q  G  N  M  P  V  N  *  C  L  T  V  C  L  *  Y  K  R  N  L  R  I  P  *  T  L  L  G  S  W </first_frame>
            <second_frame>  G  S  S  S  V  F  L  H  P  K  V  N  K  T  E  K  L  S  A  V  N  E  N  I  F  R :   L  Y  L  L  N  Y  L  Q  Q  A  E  F  L  S  L  L  I  V  T  A  D  N  G  C  L  W  F  K  N  F  S  Y  W  P  F  C  W  *  D  G  C  *  A  P  A  L  C  I  G  G  K  *  *  *  R  L  L  *  Q  *  E  H  *  E  C  *  K  S  Q  H  *  F  E  K  *  R  P  T  S  Q  L  H  V  I  S  I  F  *  N  *  C  C  K  E  E  G  T  *  R  I  W  I  R  R  F  S  R  F  I  T  C  T  F  L  F  W  N  Y  C  S  Q  Q  P  V  F  *  *  Y  *  G  K  G  T  D  C  R  Y  C  *  F  F  *  G  K  D  T  P  E  A  E  F  G  I  I  L  S  A  S  S  C  E  S  K  N  W  W  R  G  C  S  F  H  L  *  S  C  T  S  Y  R  C  S  *  W  G  R  W  M  G  *  S  W  Y  *  C  R  G  I  C  P  *  I  N  V  *  L  Y  V  C  D  T  R  G  T  *  G  F  R  R  P  Y  *  G  P   </second_frame>
            <third_frame>   E  V  P  L  C  S  C  T  Q  K  *  T  K  R  K  S  C  P  P  S  T  K  I  F  S   : G  F  T  S  *  T  T  C  S  K  Q  S  F  S  R  Y  *  L  L  Q  R  I  M  A  V  C  G  S  R  T  S  H  I  G  H  F  V  G  K  M  A  A  R  R  L  H  Y  A  L  A  V  N  N  S  S  V  S  Y  S  N  R  S  I  E  N  V  R  K  A  N  I  S  L  R  N  K  G  Q  P  H  N  F  M  L  S  Q  Y  F  K  T  S  V  A  K  R  K  G  H  E  G  F  G  L  E  G  F  R  V  L  S  L  A  R  F  S  S  G  T  T  A  P  S  S  L  S  S  D  N  T  K  E  K  E  Q  T  A  D  T  V  D  S  S  E  G  K  I  H  L  K  L  N  S  G  S  F  Y  L  P  H  P  A  K  A  K  T  G  G  E  D  A  H  F  I  Y  D  P  A  Q  A  I  G  V  A  D  G  V  G  G  W  A  D  L  G  I  D  A  G  E  Y  A  R  E  L  M  S  N  C  M  S  V  I  Q  E  E  P  K  D  S  V  D  L  I  R  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123376" stop="123999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQRIMAVCGSRTSHIGHFVGKMAARRLHYALAVNNSSVSYSNRSIENVRKANISLRNKGQPHNFMLSQYFKTSVAKRKGHEGFGLEGFRVLSLARFSSGTTAPSSLSSDNTKEKEQTADTVDSSEGKIHLKLNSGSFYLPHPAKAKTGGEDAHFIYDPAQAIGVADGVGGWADLGIDAGEYARELMSNCMSVIQEEPKDSVDLIRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="124710" PGL_stop="124235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124710" e_stop="124235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="124710" e_stop="124235" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124710" stop="124235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAACAGTGTCTTTGTATCCATCAATGTCAACAAGAACAATGTATCAATTAGGTCATCGTATACAACATATAGACATGCCTCCGTACTGTAAATCTATTAACTAAAACACTTGACGGATCAAGGAGGCATCACTAGGCGAATTGCTAGTCACAGTCCTACTTCAAAAACATTAAAGTTTGTGGCTCAATTTGCCAATGGATTGGCATTGTTAGTTACATAAGAAACAACTACAGTTATGTCATCAAGTTTCCCCCCTTGGTACTCAAATCCGGCCTCTTTGGCTGCATCAGAGAAAGGTGACGGCTTAGTTGTGTCCATTGCTCTTTGCTGTGCCAATGCTGCTATCTTTTTAGCTGTCATTTGTGGCCCAAAGCCAGCTTCCACAGCATGAATCACAACTTCCGTGATATCTGCATCATATAAATTGTCAAAAAGCCCATCTGTACCAACGACTAAGACATCTCCTGGAGCTA</gDNA_template>
            <first_frame> K  E  Q  C  L  C  I  H  Q  C  Q  Q  E  Q  C  I  N  *  V  I  V  Y  N  I  *  T  C  L  R  T  V  N  L  L  T  K  T  L  D  G  S  R  R  H  H  *  A  N  C  *  S  Q  S  Y  F  K  N  I  K  V  C  G  S  I  C  Q  W  I  G  I  V  S  Y  I  R  N  N  Y  S  Y  V  I  K  F  P  P  L  V  L  K  S  G  L  F  G  C  I  R  E  R  *  R  L  S  C  V  H  C  S  L  L  C  Q  C  C  Y  L  F  S  C  H  L  W  P  K  A  S  F  H  S  M  N  H  N  F  R  D  I  C  I  I  *  I  V  K  K  P  I  C  T  N  D  *  D  I  S  W  S   </first_frame>
            <second_frame>  K  N  S  V  F  V  S  I  N  V  N  K  N  N  V  S  I  R  S  S  Y  T  T  Y  R  H  A  S  V  L  *  I  Y  *  L  K  H  L  T  D  Q  G  G  I  T  R  R  I  A  S  H  S  P  T  S  K  T  L  K  F  V  A  Q  F  A  N  G  L  A  L  L  V  T  *  E  T  T  T  V  M  S  S  S  F  P  P  W  Y  S  N  P  A  S  L  A  A  S  E  K  G  D  G  L  V  V  S  I  A  L  C  C  A  N  A  A  I  F  L  A  V  I  C  G  P  K  P  A  S  T  A  *  I  T  T  S  V  I  S  A  S  Y  K  L  S  K  S  P  S  V  P  T  T  K  T  S  P  G  A  </second_frame>
            <third_frame>   R  T  V  S  L  Y  P  S  M  S  T  R  T  M  Y  Q  L  G  H  R  I  Q  H  I  D  M  P  P  Y  C  K  S  I  N  *  N  T  *  R  I  K  E  A  S  L  G  E  L  L  V  T  V  L  L  Q  K  H  *  S  L  W  L  N  L  P  M  D  W  H  C  *  L  H  K  K  Q  L  Q  L  C  H  Q  V  S  P  L  G  T  Q  I  R  P  L  W  L  H  Q  R  K  V  T  A  *  L  C  P  L  L  F  A  V  P  M  L  L  S  F  *  L  S  F  V  A  Q  S  Q  L  P  Q  H  E  S  Q  L  P  *  Y  L  H  H  I  N  C  Q  K  A  H  L  Y  Q  R  L  R  H  L  L  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0030P17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="129965" PGL_stop="124964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128640" e_stop="128458"/>
            <exon e_start="126854" e_stop="126691"/>
            <exon e_start="126540" e_stop="126153"/>
            <exon e_start="125833" e_stop="125693"/>
            <exon e_start="125167" e_stop="124964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128640" e_stop="128458" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="128457" i_stop="126855" i_length="1603"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126854" e_stop="126691" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="126690" i_stop="126541" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126540" e_stop="126153" e_length="388"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="126152" i_stop="125834" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125833" e_stop="125693" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="125692" i_stop="125168" i_length="525"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125167" e_stop="124964" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128640" stop="128458"/>
              <exon start="126854" stop="126691"/>
              <exon start="126540" stop="126483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126758" stop="126691"/>
              <exon start="126540" stop="126153"/>
              <exon start="125833" stop="125693"/>
              <exon start="125167" stop="124964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587491" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG : GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAG</gDNA_template>
            <first_frame> L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  :  A  N  I  C  R  K  C  S  F  H  C  S  L  H  R  F  Q  P  M  Y  V  E  H  *  S  Y  I  F  S  C  C  F  R  N  S  *  F  E  I  *  C  C  V  N  R  S  S  *  S  F  N  L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  R  F  S  L  S  R  D  F  C  C  I  H  L  V  L  F  S  A  T  S  L  S  F  I  N  L  S  L  T  Y  F  K  F  L  A  I  T  C  I  I  L  I  S  I  C  F  D  L  I  I  K  L  D  Y  L  C  S  A  V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I  I  S  I  L  Q  P  Y  S  Q </first_frame>
            <second_frame>  L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R :   P  I  Y  A  G  N  A  L  S  T  V  R  Y  T  G  S  S  P  C  M  L  S  I  R  A  T  S  F  P  V  A  S  E  T  A  D  L  K  S  N  A  A  S  I  D  Q  V  D  L  S  T  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A  G  F  P  S  P  V  T  S  A  V  F  T  L  C  F  F  L  L  L  L  Y  P  L  S  I  S  P  *  H  I  S  N  S  *  Q  *  L  A  *  F  *  F  Q  S  A  L  I  *  S  L  N  W  I  T  S  V  L  Q  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S  L  F  Q  F  S  N  L  I  H   </second_frame>
            <third_frame>   *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S   : G  Q  Y  M  Q  E  M  L  F  P  L  F  V  T  Q  V  P  A  H  V  C  *  A  L  E  L  H  L  F  L  L  L  Q  K  Q  L  I  *  N  L  M  L  R  Q  *  I  K  L  I  F  Q  P  W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  V  F  P  L  P  *  L  L  L  Y  S  P  C  A  F  F  C  Y  F  F  I  L  Y  Q  S  L  L  N  I  F  Q  I  L  S  N  N  L  H  N  S  D  F  N  L  L  *  F  D  H  *  T  G  L  P  L  F  C  S  W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  Y  F  N  S  P  T  L  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126404" stop="126153"/>
                    <exon start="125833" stop="125693"/>
                    <exon start="125167" stop="125090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACRENRCRRFSLSRDFCCIHLVLFSATSLSFINLSLTYFKFLAITCIILISICFDLIIKLDYLCSAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKIIVAVNKDADAPIFQVADYGLVGDLFDVIPELLEKLPEKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128504" stop="128458"/>
                    <exon start="126854" stop="126691"/>
                    <exon start="126540" stop="126296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLRNMLLHPTLPFLRPIYAGNALSTVRYTGSSPCMLSIRATSFPVASETADLKSNAASIDQVDLSTLDEDESVAKSTYVKLSAQISERPDLGNARIVVTGGRGVKSAENFKMIDKLAEKIGAAGFPSPVTSAVFTLCFFLLLLYPLSISP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="129756" e_stop="129650"/>
            <exon e_start="128640" e_stop="128027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="129756" e_stop="129650" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="129649" i_stop="128641" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128640" e_stop="128027" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129756" stop="129650"/>
              <exon start="128640" stop="128027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGG</gDNA_template>
            <first_frame> P  K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R  *  L  L  F  G  C  W  T  V  L  F  H  H  V  S  H  G  I  L  T  L  C  S  Y  W  F  C  N  L  V  C  S  L  F  S  N  I  L  A  R  T  S  L  V  Q  C  E  K  E  *  L  Y  S  I  D  I  L  K  *  L  C  K  T  H  L  Q  C  S  L  R  Y  R  E  R  M  I  F  R  G  G  E  K  R  G  *  Y  C  F  F  S  V  F  L  Y  *  N  S  W  K  C  H  F  Q  L  S  A  E  L  W  Q  A  S  H  R  T  K  S  R  N  D  D  R  *  S  C  Q  E  Y  P  K  Y  T  C  *  L  L  L  T  I  L  S  L  L  </first_frame>
            <second_frame>  Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S  G  N  S  S  L  D  A  G  L  F  C  F  T  M  F  P  T  E  Y  *  P  Y  A  P  T  G  F  A  I  *  F  A  R  F  S  V  T  S  W  L  G  H  P  *  F  S  V  K  K  S  S  C  I  L  L  T  Y  L  S  D  C  V  K  H  I  Y  N  V  H  F  V  T  E  R  E  *  S  S  E  E  E  K  R  E  D  D  I  A  F  S  L  S  S  C  T  K  I  L  G  N  A  I  F  N  *  V  L  N  F  G  K  Q  A  I  E  Q  N  P  G  T  M  I  G  D  L  V  K  S  I  Q  S  I  P  V  N  S  Y  S  Q  Y  Y  H  F  W </second_frame>
            <third_frame>   K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  V  T  P  L  W  M  L  D  C  F  V  S  P  C  F  P  R  N  T  N  L  M  L  L  L  V  L  Q  F  S  L  L  A  F  Q  *  H  L  G  *  D  I  P  S  S  V  *  K  R  V  V  V  F  Y  *  H  T  *  V  I  V  *  N  T  F  T  M  F  T  S  L  Q  R  E  N  D  L  P  R  R  R  K  E  R  M  I  L  L  F  L  C  L  L  V  L  K  F  L  E  M  P  F  S  T  E  C  *  T  L  A  S  K  P  *  N  K  I  Q  E  R  *  *  V  I  L  S  R  V  S  K  V  Y  L  L  T  L  T  H  N  I  I  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129754" stop="129650"/>
                    <exon start="128640" stop="128350"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVTPLWMLDCFVSPCFPRNTNLMLLLVLQFSLLAFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="129965" e_stop="129650"/>
            <exon e_start="128640" e_stop="128458"/>
            <exon e_start="127616" e_stop="127405"/>
            <exon e_start="126854" e_stop="126691"/>
            <exon e_start="126540" e_stop="126379"/>
            <exon e_start="126205" e_stop="126153"/>
            <exon e_start="125833" e_stop="125693"/>
            <exon e_start="125167" e_stop="124991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="0.997"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.684" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="129965" e_stop="129650" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="129649" i_stop="128641" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128640" e_stop="128458" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="128457" i_stop="127617" i_length="841"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127616" e_stop="127405" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.572" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127404" i_stop="126855" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126854" e_stop="126691" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="126690" i_stop="126541" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126540" e_stop="126379" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.684" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126378" i_stop="126206" i_length="173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="126205" e_stop="126153" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="126152" i_stop="125834" i_length="319"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="125833" e_stop="125693" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="125692" i_stop="125168" i_length="525"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="125167" e_stop="124991" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129965" stop="129650"/>
              <exon start="128640" stop="128458"/>
              <exon start="127616" stop="127405"/>
              <exon start="126854" stop="126691"/>
              <exon start="126540" stop="126379"/>
              <exon start="126205" stop="126153"/>
              <exon start="125833" stop="125693"/>
              <exon start="125167" stop="124991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG : GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG : GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG : TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATT</gDNA_template>
            <first_frame> C  Y  G  I  K  K  V  S  N  *  E  R  V  D  D  N  G  V  A  G  R  K  K  S  N  Q  L  I  G  F  G  V  R  K  I  E  T  P  R  *  R  D  I  Y  R  H  G  R  R  H  Y  *  F  I  L  V  V  I  I  F  N  T  P  *  G  L  T  F  L  T  Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S   : G  P  Y  C  *  F  *  Q  I  Y  I  P  F  G  *  T  M  G  Q  I  S  P  S  C  S  A  E  W  W  L  F  T  H  N  C  C  I  R  F  I  W  E  K  Y  I  T  A  C  S  S  S  S  G  Y  F  S  N  Y  *  C  H  K  D  F  W  I  K  P  L  Y  *  :  A  N  I  C  R  K  C  S  F  H  C  S  L  H  R  F  Q  P  M  Y  V  E  H  *  S  Y  I  F  S  C  C  F  R  N  S  *  F  E  I  *  C  C  V  N  R  S  S  *  S  F  N  L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  S :   W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  </first_frame>
            <second_frame>  V  M  E  *  R  R  F  L  I  E  R  E  *  T  I  M  E  L  L  G  G  R  R  A  I  N  *  *  V  L  V  *  E  R  *  R  R  H  A  E  E  I  Y  T  D  T  A  D  A  I  I  N  L  Y  *  *  *  *  S  L  I  L  H  K  D  *  H  F  *  P  K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  :  V  L  I  A  D  S  D  K  F  T  Y  P  L  A  E  P  W  A  K  L  V  H  L  V  Q  Q  S  G  G  Y  S  H  I  I  A  A  S  G  S  F  G  K  N  I  L  P  R  A  A  A  L  L  D  I  S  P  I  T  D  V  T  K  I  S  G  S  N  L  F  I  R :   P  I  Y  A  G  N  A  L  S  T  V  R  Y  T  G  S  S  P  C  M  L  S  I  R  A  T  S  F  P  V  A  S  E  T  A  D  L  K  S  N  A  A  S  I  D  Q  V  D  L  S  T  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A   : V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I </second_frame>
            <third_frame>   L  W  N  K  E  G  F  *  L  R  E  S  R  R  *  W  S  C  W  E  E  E  E  Q  S  I  D  R  F  W  C  E  K  D  R  D  A  T  L  K  R  Y  I  Q  T  R  Q  T  P  L  L  I  Y  I  S  S  N  N  L  *  Y  S  I  R  T  D  I  F  D  P  K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R :   S  L  L  L  I  L  T  N  L  H  T  L  W  L  N  H  G  P  N  *  S  I  L  F  S  R  V  V  A  I  H  T  *  L  L  H  Q  V  H  L  G  K  I  Y  Y  R  V  Q  Q  L  F  W  I  F  L  Q  L  L  M  S  Q  R  F  L  D  Q  T  S  L  L   : G  Q  Y  M  Q  E  M  L  F  P  L  F  V  T  Q  V  P  A  H  V  C  *  A  L  E  L  H  L  F  L  L  L  Q  K  Q  L  I  *  N  L  M  L  R  Q  *  I  K  L  I  F  Q  P  W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  :  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0030P17.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129757" stop="129650"/>
                    <exon start="128640" stop="128458"/>
                    <exon start="127616" stop="127405"/>
                    <exon start="126854" stop="126691"/>
                    <exon start="126540" stop="126379"/>
                    <exon start="126205" stop="126153"/>
                    <exon start="125833" stop="125693"/>
                    <exon start="125167" stop="125090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVLIADSDKFTYPLAEPWAKLVHLVQQSGGYSHIIAASGSFGKNILPRAAALLDISPITDVTKISGSNLFIRPIYAGNALSTVRYTGSSPCMLSIRATSFPVASETADLKSNAASIDQVDLSTLDEDESVAKSTYVKLSAQISERPDLGNARIVVTGGRGVKSAENFKMIDKLAEKIGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKIIVAVNKDADAPIFQVADYGLVGDLFDVIPELLEKLPEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 50 chains have been computed
$ 
$ memory statistics:
$ 84592 bytes spliced alignments in total
$ 32 spliced alignments have been stored
$ 2643 bytes was the average size of a spliced alignment
$ 32544 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1549 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 59 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:40:31
-->
