<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:16:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733773" ref_strand="+" ref_description="SGN-E733773 [LB10DF06]">
      <seq>cggtggcactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttccgatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggaatcatatgtctaatagtcctaaatacatgaagaaaattataaaatcattccagtctcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9412" stop="7904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9114" g_stop="8202" g_length="913"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="913" r_length="913" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E733773" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9114" e_stop="8202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAATTATGAATG</genome_strand>
        <mrna_strand>CGGTGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGAATCATATGTCTAATAGTCCTAAATACATGAAGAAAATTATAAAATCATTCCAGTCTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223405" ref_strand="+" ref_description="SGN-E223405 [cLEL-14-B4](-)">
      <seq>ttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttcggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggatccatatgtctaatagtctaaaatacatgaagaaaattataaaatcattcagttctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="8970" stop="7911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8670" g_stop="8211" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E223405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8670" e_stop="8211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</genome_strand>
        <mrna_strand>TTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223498" ref_strand="+" ref_description="SGN-E223498 [cLEL-14-B4](-)">
      <seq>cggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgtgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggatccatatgtctaatagtctaaaatacatgaagaaaattataaaatcattcagttctcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="8913" stop="7911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8613" g_stop="8211" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E223498" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8613" e_stop="8211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</genome_strand>
        <mrna_strand>CGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTG-TGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391849" ref_strand="+" ref_description="SGN-E391849 [TUS-24-C13](-)">
      <seq>attccgattcaattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaccccccccccccccccctttgatttgtcctttttcgcatcaacagcgtcgccgtttggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgatttttagcgcagatctggccggatctccattgtttccggtgccggtgatacgttggacgtgaatagagctgttagaagtttgcttttctgtcgaatgctgacctccgcaatggatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacccggtggaggtcggaacggaacaacttttttgtgtactccggggaccaaaacgttaggatccataagtctaatagtctaaaatacatgaagaaaattataaaatcacccagttctcctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9048" stop="7904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8749" g_stop="8212" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="564"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E391849" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8749" e_stop="8212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAG-AGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTA</genome_strand>
        <mrna_strand>ATTCCGATTCAATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTACCCCCCCCCCCCCCCCCTTTGATTTGTCCTTTTTCGCATCAACAGCGTCGCCGTTTGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTTTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTTGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTCGAATGCTGACCTCCGCAATGGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACCCGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGGGACCAAAACGTTAGGATCCATAAGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCACCCAGTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486857" ref_strand="+" ref_description="SGN-E486857 [cSTE-23-O16]">
      <seq>gccaaacacggcacaaagagatactctccaatcttcttcttcttctctctcattgtaaaacagcaaaaatggcggtttctgctcggcgatcaaccggaccggtgctccgttcactgtcccccgccgggagattttactcgtcgacatctagaacttcgtcgtcttcggcttcatcggtccggttcacactggaccgtgagacttccccgagccggtctatttccgtaatgaaccggcagaaaacaatggcttcttctcagaagaagacgtgtatgtgttcgccgacgaatcatccaggttcattccgttgtagtatgcataagaaaatggataatcgacggagtagtaatactagccaaacagcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgaacttgttaaaagagctttagcggctttgattcgtccttcttctcatcaacagcgccgccgttccgatttccaacgccgacctagccggctttccgttatttccagttccggtgattcataagactgttattcgatctctagaaatttctgttgaatgctgacgtcagcattcatcaacgccgccgcgccgatctagccggatttccattatttccggtgccggtgattcgtaagacgtgaatagagctgntagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9419" stop="8083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9119" g_stop="8383" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E486857" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9119" e_stop="8383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTC-ATTCAA--C-AACGCGTGC-TGCGCCGA-TTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGG</genome_strand>
        <mrna_strand>GCCAAACACGGCACAAAGAGATACTCTCCAATCTTCTTCTTCTTCTCTCTC-ATTGTAAAACAGC-AAAAATGGCGGTTTCTGCTCGGCGATCAACCGGACCGGTGCTCCGTTCACTGTCCCCCGCCGGGAGATTTTACTCGTCGACATCTAGAACTTCGTCGTCTTCGGCTTCATCGGTCCGGTTCACACTGGACCGTGAGACTTCCCCGAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACAATGGCTTCTTCTCAGAAGAAGACGTGTATGTGTTCGCCGACGAATCATCCAGGTTCATTCCGTTGTAGTATGCATAAGAAAATGGATAATCGACGGAGTAGTAATACTAGCCAAACAGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAACTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCTCATCAACAGCGCCGCCGTTCCGATTTCCAACGCCGACCTAGCCGGCTTTCCGTTATTTCCAGTTCCGGTGATTCATAAGACTGTTATTCGATCTCTAGAAATTTCTGTTGAATGCTGACGTCAGCATTCATCAACGCCGCCGCGCCGATCTAGCCGGATTTCCATTATTTCCGGTGCCGGTGATTCGTAAGACGTGAATAGAGCTGNTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321518" ref_strand="+" ref_description="SGN-E321518 [cTOB-23-J12]">
      <seq>agccaaacgcggcactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttcggatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9420" stop="8166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9120" g_stop="8466" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E321518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9120" e_stop="8466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCG</genome_strand>
        <mrna_strand>AGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCGGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427418" ref_strand="+" ref_description="SGN-E427418 [STM-48-M20]">
      <seq>gccaaacacggcacaaagagatactctccaatcttcttcttcttctctctcattgtaaaacagcaaaaatggcggtttctgctcggcgatcaaccggaccggtgctccgttcactgtcccccgccgggagattttactcgtcgacatctagaacttcgtcgtcttcggcttcatcggtccggttcacactggaccgtgagacttccccgagccggtctatttccgtaatgaaccggcagaaaacaatggcttcttctcagaagaagacgtgtatgtgttcgccgacgaatcatccaggttcattccgttgtagtatgcataagaaaatggataatcgacggagtagtaatactagccaaacagcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgaacttgttaaaagagctttagcggctttgattcgtccttcttctcatcaacagcgccgccgttccgatttccaacgccgacctagccggctttccgttatttccagttccggtgattcataagactgttattcgatctctagaaatttctgttgaatgctgacgtcagcattcatcaacgccgccgcgccgatctagccggatttccattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9419" stop="8089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9119" g_stop="8528" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E427418" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9119" e_stop="8528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTC</genome_strand>
        <mrna_strand>GCCAAACACGGCACAAAGAGATACTCTCCAATCTTCTTCTTCTTCTCTCTC-ATTGTAAAACAGC-AAAAATGGCGGTTTCTGCTCGGCGATCAACCGGACCGGTGCTCCGTTCACTGTCCCCCGCCGGGAGATTTTACTCGTCGACATCTAGAACTTCGTCGTCTTCGGCTTCATCGGTCCGGTTCACACTGGACCGTGAGACTTCCCCGAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACAATGGCTTCTTCTCAGAAGAAGACGTGTATGTGTTCGCCGACGAATCATCCAGGTTCATTCCGTTGTAGTATGCATAAGAAAATGGATAATCGACGGAGTAGTAATACTAGCCAAACAGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAACTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCTCATCAACAGCGCCGCCGTTCCGATTTCCAACGCCGACCTAGCCGGCTTTCCGTTATTTCCAGTTCCGGTGATTCATAAGACTGTTATTCGATCTCTAGAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247698" ref_strand="+" ref_description="SGN-E247698 [cLEF-42-A10]">
      <seq>cactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcaattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttcggatttccaacgccgacctagtcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9408" stop="8286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9108" g_stop="8586" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E247698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9108" e_stop="8586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACT</genome_strand>
        <mrna_strand>CACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCAATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCGGATTTCCAACGCCGACCTAGTCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391613" ref_strand="+" ref_description="SGN-E391613 [TUS-24-C13]">
      <seq>gcactaagaaatactctccaatctacttcttcttctctctcaactgtaaaacaacgaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcaaattcgattcaattgcatatgaggcgatcggcgatgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9409" stop="8410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9109" g_stop="8710" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E391613" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9109" e_stop="8710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGA</genome_strand>
        <mrna_strand>GCACTAAGAAATACTCTCCAATCTACTTCTTCTTCTCTCTCAACTGTAAAACAACGAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCAAATTCGATTCAATTGCATATGAGGCGATCGGCGATGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321410" ref_strand="+" ref_description="SGN-E321410 [cTOB-23-M15]">
      <seq>cgcggcactagcaaatactctccaatcttcttcttcttctctctcatctgtaaaacaacaaaaaatggcggcttctgcacggatatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcggcatctagaacttcttcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccgatctatttccgtaatgaaccggcataaaacactggcttcttctcacaataagaggtgtatgtgttctccgacgaatcctccaggttcgttccgttgtattatgcataagaaaatggatattcgacggagtaatagtactagccaaacggcgtcgaattcgattcaattgcatatgatgcgatcggcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9413" stop="8413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9113" g_stop="8713" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E321410" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9113" e_stop="8713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGA</genome_strand>
        <mrna_strand>CGCGGCACTAGCAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCATCTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGATATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGGCATCTAGAACTTCTTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGATCTATTTCCGTAATGAACCGGCATAAAACACTGGCTTCTTCTCACAATAAGAGGTGTATGTGTTCTCCGACGAATCCTCCAGGTTCGTTCCGTTGTATTATGCATAAGAAAATGGATATTCGACGGAGTAATAGTACTAGCCAAACGGCGTCGAATTCGATTCAATTGCATATGATGCGATCGGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705540" ref_strand="+" ref_description="SGN-E705540 [FA27BG06]">
      <seq>ctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactccagcagtccattcagcttctctacgagacatgtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16510" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16810" g_stop="16866" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="173" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="475" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="541" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="659" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21984" g_stop="22145" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="822" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22701" g_stop="22722" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="844" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E705540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16810" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
          <exon e_start="21984" e_stop="22145"/>
          <exon e_start="22701" e_stop="22722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACT-CAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTAT</genome_strand>
        <mrna_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706419" ref_strand="+" ref_description="SGN-E706419 [FA29DF06]">
      <seq>ctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattcccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactcagcagtccattcagcttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16510" stop="22453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16810" g_stop="16866" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="173" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="475" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="541" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="659" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21984" g_stop="22145" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="822" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E706419" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16810" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
          <exon e_start="21984" e_stop="22145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATT-CCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG</genome_strand>
        <mrna_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319408" ref_strand="+" ref_description="SGN-E319408 [cTOB-15-B21]">
      <seq>ctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16510" stop="20445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16810" g_stop="16866" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="173" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="402" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20145" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E319408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16810" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATG</genome_strand>
        <mrna_strand>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325749" ref_strand="+" ref_description="SGN-E325749 [cTOC-15-F14]">
      <seq>tctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16511" stop="21493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16811" g_stop="16866" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="172" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="298" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="401" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="474" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="540" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21162" g_stop="21193" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="572" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E325749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16811" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATG</genome_strand>
        <mrna_strand>TCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449625" ref_strand="+" ref_description="SGN-E449625 [cSTS-7-E15]">
      <seq>caactcccatctgtggcacctctgttcatcaccaccttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatataagattttcagatcggaagaatataatcacaatgacaattgaaaacgctgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaaactgatcagcggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccatgtttttgttactactttacgagacgtcttcaaggaagaaactgtggaatatattttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattatttcatgacagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatacaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgttgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatgttctgaatggcctagtggattggctatgcacacagctgagaaagccttctcatnctagttgtagcattccctctgcaatcaatagtcttgcaactctgttgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16523" stop="22354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16823" g_stop="16866" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="160" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="286" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="389" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="462" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="528" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="646" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21984" g_stop="22054" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="717" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E449625" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16823" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
          <exon e_start="21984" e_stop="22054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGA</genome_strand>
        <mrna_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCACCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATAAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGCTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAACTGATCAGCGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCATGTTTTTGTTACTACTTTACGAGACGTCTTCAAGGAAGAAACTGTGGAATATATTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTTCATGACAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATACAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGTTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATGTTCTGAATGGCCTAGTGGATTGGCTATGCACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATNCTAGTTGTAGCATTCCCTCTGCAATCAATAGTCTTGCAACTCTGTTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423054" ref_strand="+" ref_description="SGN-E423054 [STM-41-M24]">
      <seq>caactcccatctgtggcacctctgttcatcaccaccttcatattgttgaaggaaacaacagattctgaattttcttgtttcattagaggatataagattttcagatcggaagaatataatcacaatgacaattgaaaacgctgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaaactgatcagcggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccatgtttttgttactactttacgagacgtcttcaaggaagaaactgtggaatatattttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattatttcatgacagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatacaagagaagagctgtaagattctctctttgatagtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16523" stop="21353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16823" g_stop="16866" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="0.95"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="160" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="286" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="389" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="462" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="528" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E423054" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16823" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG</genome_strand>
        <mrna_strand>CAACTCCCATCTGTGGCACCTCTGTTCATCACCACCTTCATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATAAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGCTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAACTGATCAGCGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCATGTTTTTGTTACTACTTTACGAGACGTCTTCAAGGAAGAAACTGTGGAATATATTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTTCATGACAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATACAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458158" ref_strand="+" ref_description="SGN-E458158 [cPRO-4-J2]">
      <seq>atctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatataagattttcagatcggaagaatataatcacaatgacaattgaaaacgctgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaaactgatcagcggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgatggtccagcttatatccatgtttttgttactactttacgagatgtcttcaaggaagaaactgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagccagattattccatgacagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatacaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgttgatgcaaatggagatgcctcgagttcaaagaggacactcaccatgatggaaaatgttctgaatggcctagtggattggctatgcgcacagctgagaaagccttctcatcctagttgtagcattctctctgcaatcaatagtcttgcaactctgttgaaggagcctattgttcgatgttcatttgntcaagctgatggagtgaagctgctcgntcctttaatttcacagcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16531" stop="22428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16831" g_stop="16866" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="152" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="278" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="381" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="454" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="520" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="638" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704">
            <donor d_prob="0.946" d_score="0.90"/>
            <acceptor a_prob="0.832" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21984" g_stop="22128" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="782" r_length="144" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E458158" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16831" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
          <exon e_start="21984" e_stop="22128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTA</genome_strand>
        <mrna_strand>ATCTGTGGCACCTCTGTTCATCACCATCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATAAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGCTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAACTGATCAGCGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCCAGCTTATATCCATGTTTTTGTTACTACTTTACGAGATGTCTTCAAGGAAGAAACTGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCCAGATTATTCCATGACAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATACAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGTTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCATGATGGAAAATGTTCTGAATGGCCTAGTGGATTGGCTATGCGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCTCTCTGCAATCAATAGTCTTGCAACTCTGTTGAAGGAGCCTATTGTTCGATGTTCATTTGNTCAAGCTGATGGAGTGAAGCTGCTCGNTCCTTTAATTTCA-CAGCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365694" ref_strand="+" ref_description="SGN-E365694 [cLPT-8-M1]">
      <seq>gaggcagatcttcagctgttaaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgtcactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgcgcacagctgagaaagccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="18754" stop="21581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19050" g_stop="19121" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="175" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="248" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="314" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="432" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E365694" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19050" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG</genome_strand>
        <mrna_strand>GAGGCAGATCTTCAGCTGTTAAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTCACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214174" ref_strand="+" ref_description="SGN-E214174 [cLEC-77-G5]">
      <seq>ttattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactcagcagtccattcagcttctctacgagacatgtctatgcgtttggcttctgtcttactatgaacctgcaattgagtacttggctacttctagggccctacctcgattgattgaagttgttaaaggttcgancaaggagaaagtagtcagagttgtcatcttgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="19806" stop="23428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20106" g_stop="20158" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="119" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="237" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21984" g_stop="22145" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="399" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22701" g_stop="22826" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="525" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22827" i_stop="23103" i_length="277">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23104" g_stop="23128" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="550" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E214174" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20106" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
          <exon e_start="21984" e_stop="22145"/>
          <exon e_start="22701" e_stop="22826"/>
          <exon e_start="23104" e_stop="23128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAGGTGAGCTATTTTTGCTGCTATTTCTTCTAATATCTTTTCTACTTGCTATTCCTCCGTCTTAGACTTAATCTAATGGTTCTCCTGTGCATGCCAAGAAAGAACTCGATAAGATTATCTTTTCTACTCGCGTTCATTATTCACTTCTCTTGAGTTCTTTTCAGCCATTTGCTTTCTAGGCAGCACATTACTTAATCTGTTGCATTTTCTATTTATTCATCTATGAATTATCTTCGGCTCATCATCGTTCATGGCAATTTTTATGTATCAATGACCACAGGTAGTCAGAGTTGTCATCTTGACTC</genome_strand>
        <mrna_strand>TTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGANCAAGGAGAAA.....................................................................................................................................................................................................................................................................................GTAGTCAGAGTTGTCATCTTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575998" ref_strand="+" ref_description="SGN-E575998 [35709]">
      <seq>cgcaccagctgagaaagccttctcatcctagttgtagcattctctctgcaatcaatagtcttgcaactctgttgaaggagcctattgttcgatgttcatttgttcaagctgatggagtgaagctgctcgttcctttaatttcaccagcatctactcaacagtccattcagcttctctacgagacatgtctatgcgtatggcttctgtcttactatgaacctgcaattgagtacttggctacttctagggccctacctcgattgattgaagttgttaaaggttcgacaaaggagaaggtagtcagagttgtcatcttgactcttaggaatctgcttgccagagggtcatttggtgctcaaatggtagacctggatgtgctgcaaatcgtacagagtttgaaagcgcaggcttggagtgatgaggaccttttggacactctgaatcaacttgaagggaggattgaaggccaacatcaaaaaattgagttcgtatgataagtacaagcaggaagtcctacttggcagtcttgattggtcccccatgcataaggatcctctattctggaaggaaaatataacttgtttcgagggagaacggatttcaagatcttgagagtgctcatgacgatgttggatacatcaaccggatgcaagggacaacttgcttgtagcttgctatagacttgtcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="21681" stop="25064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21984" g_stop="22145" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="170" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22701" g_stop="22826" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="296" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22827" i_stop="23103" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23104" g_stop="23229" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="422" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23230" i_stop="23476" i_length="247">
            <donor d_prob="0.397" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23477" g_stop="23656" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="605" r_length="183" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23657" i_stop="24685" i_length="1029">
            <donor d_prob="0.980" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24686" g_stop="24766" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="691" r_length="86" r_score="0.790"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E575998" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21984" e_stop="22145"/>
          <exon e_start="22701" e_stop="22826"/>
          <exon e_start="23104" e_stop="23229"/>
          <exon e_start="23477" e_stop="23656"/>
          <exon e_start="24686" e_stop="24766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAGGTGAGCTATTTTTGCTGCTATTTCTTCTAATATCTTTTCTACTTGCTATTCCTCCGTCTTAGACTTAATCTAATGGTTCTCCTGTGCATGCCAAGAAAGAACTCGATAAGATTATCTTTTCTACTCGCGTTCATTATTCACTTCTCTTGAGTTCTTTTCAGCCATTTGCTTTCTAGGCAGCACATTACTTAATCTGTTGCATTTTCTATTTATTCATCTATGAATTATCTTCGGCTCATCATCGTTCATGGCAATTTTTATGTATCAATGACCACAGGTAGTCAGAGTTGTCATCTTGACTCTTAGGAATTTGCTTGCCAGAGGGTCATTTGGTTCTCAAATGGTAGACCTGGATGTGCTGCAAATTGTACAGAGCTTGAAAGCGCAGGCCTGGAGTGATGAGGTGATTGAATCGAACGGTTTTGTGGTTTTTAATTTGATACAGTATCTTACTTTATTTTCTATTTCTGTATAATAGAAGCAACTTGAAAGAAGTTCCGCCAAAGTTTAAATAATAGACTGTTTAGACAGTACTTAATCATTTTGGTTCTTATAAAGAAACATTTCGAGAAGGTTCAGTTGGCCGAAATGAATTTTTAGATTCACAGATTTATCGACATCACCCTAATTTGCCGTGTAATCTGTTTTAGGACCTTTTGGACGCTCTGAATCAACTTGAA-GGAGGATTGAAGGCCAACATCAAAAAAATGAGTTCGTACGATAAGTACAAGCAGGAAGTCCTACTTGGCAGTCTTGATTGGTCCCCCATGCATAAAGATCCTCTATTCTGGAAGGAAAATATAACTTGTTTCGA-GGAGAACGGATTTC-AGGTATTGCCTATGGCATTTCTCATTCTTTCGTATAGCTTAAACACCATAAATTACCATTACTATTGTGCCTTTATGTGAGAAAAACAACAATCTCTGTCAGGTCGCGTAACTGCTCAACAATCTTGCTGGCATTGACTTAATATATATGCTAAATGAAATAAAGAACTCTACACATTTATAACTAGCCGTAGACATCAGTCGTATTAGTCAGTAGAGTGGTGCAATGTTTTTAAAGTGAAAAGCACAAAAAATGACGAGGTCCATATGGATGAAAAGCATTCCTTCTGTGAATAAAAATAGGGAAAAAGGATGAATATACCCCCGAACTATCGTAAATGGTATGCAGATACCCTCCGTCATACTTTTGGGACATTGGTGCCCGTCGTCCAAAAACTAGAGCGTAGATGCCCTTCACTCTAACAGAAGACTAAATAGGGCGCAATCTTATTCATCGATCCGATGTTAGGTCGGTGGATAAGATTATGACACATGTATTTCCGTTAGTATAAAGGGTATATATGCTCTAGTTTTTGGACGGCAGGGGCACCAATGTCCCTAAAGTATGACGGAGGGTATCTGCATATCATTTCTGATAGTTCGGGGATATTTGTCCTTTTTCCCATAAAAATATACTATTTAGGGTAAATTATACACTATCAAACATCTATGATAAAACTAATTTCAACACCAATGTACAATAATGTCGATATTAATCTAACTCATCAAAGTTATTCAAAGAAGTGATTGGTTCTCGTCGTAGTCTCAGCACCATTTTTCAAGGTTTATTATTTTCATCCCTTTCTGCTGTATTGAGTGTACAAGTAAATGGTCAAAAACACACCCGAACTATCACTTTTTTCCGAGTTTCACATCCCAACTAGGTGTGTTTTTATACACAAATGGTGATAGTTCGGGTAGGAAAAGGGAATTTCTGATAGTTCAGGCGTATTTTTGACCATTAACTCATAAATCAGTCCAACGACTATTGTATTGAGTGTATAGATTGATCGACGTTGTGTTGTGCTGCAGATTTTGAGAGTGCTCATGACGATTTTGGATACATCAA-ATGATTCAA-GGAC-ACTTGC-TGTAGCTTGCTAT-GACTTGTCACAG</genome_strand>
        <mrna_strand>CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCTCTCTGCAATCAATAGTCTTGCAACTCTGTTGAAGGAGCCTATTGTTCGATGTTCATTTGTTCAAGCTGATGGAGTGAAGCTGCTCGTTCCTTTAATTTCACCAGCATCTACTCAACAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTATGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAG.....................................................................................................................................................................................................................................................................................GTAGTCAGAGTTGTCATCTTGACTCTTAGGAATCTGCTTGCCAGAGGGTCATTTGGTGCTCAAATGGTAGACCTGGATGTGCTGCAAATCGTACAGAGTTTGAAAGCGCAGGCTTGGAGTGATGAG.......................................................................................................................................................................................................................................................GACCTTTTGGACACTCTGAATCAACTTGAAGGGAGGATTGAAGGCCAACATCAAAAAATTGAGTTCGTATGATAAGTACAAGCAGGAAGTCCTACTTGGCAGTCTTGATTGGTCCCCCATGCATAAGGATCCTCTATTCTGGAAGGAAAATATAACTTGTTTCGAGGGAGAACGGATTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGAGAGTGCTCATGACGATGTTGGATACATCAACCGGATGCAAGGGACAACTTGCTTGTAGCTTGCTATAGACTTGTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595848" ref_strand="-" ref_description="SGN-E595848 [39129]">
      <seq>ctgcaatcaatagtcttgcaactctgttgaaggagcctgttgttcgacgttcatttgttcaagatgatggagtgaagctgctcgttcctttaatttcaccagcatctactcagcagtccattcagcttctctacgagacatgtctatgcgtttggcttttgtcttactatgaacctgcaatcgagtacttggctacttctagggccctacctcgattgattgaagttgttaaaggttcgacaaaggagaaggtagtcaagatgacaactctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="21721" stop="23134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22021" g_stop="22145" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22701" g_stop="22826" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="251" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22827" i_stop="23103" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23104" g_stop="23122" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="269" r_length="18" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E595848" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595848" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22021" e_stop="22145"/>
          <exon e_start="22701" e_stop="22826"/>
          <exon e_start="23104" e_stop="23122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAGGTGAGCTATTTTTGCTGCTATTTCTTCTAATATCTTTTCTACTTGCTATTCCTCCGTCTTAGACTTAATCTAATGGTTCTCCTGTGCATGCCAAGAAAGAACTCGATAAGATTATCTTTTCTACTCGCGTTCATTATTCACTTCTCTTGAGTTCTTTTCAGCCATTTGCTTTCTAGGCAGCACATTACTTAATCTGTTGCATTTTCTATTTATTCATCTATGAATTATCTTCGGCTCATCATCGTTCATGGCAATTTTTATGTATCAATGACCACAGGTAGTCAGAGTTGTCATCT</genome_strand>
        <mrna_strand>CTGCAATCAATAGTCTTGCAACTCTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAAGATGATGGAGTGAAGCTGCTCGTTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTTTGGCTTTTGTCTTACTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAG.....................................................................................................................................................................................................................................................................................GTAGTCA-AGATGACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485388" ref_strand="+" ref_description="SGN-E485388 [cSTE-17-B22]">
      <seq>gttcttctcttctttttttcttccaatgtctacaaactcatcagacaaggttgttcaccttgatgaagtgattgtagccatggtgccatttcctgattttagccatctcaatcagctcttcgttcttgctcgtttcatcgcttcccataatatacaagtacacttcctttgccttgctgatcggaaccaagatttgaaacttcgcatccaaggtggtctatgtgcctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatgatttgccttcgattattatatttatgaaaaagctcatcgagcccattagaagaacttgtattgatatctctaccaatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtggagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgataacttggttgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctgtagtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctgaatttacttgcacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="30461" stop="31759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30757" g_stop="31459" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E485388" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30757" e_stop="31459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCTTCTCTTATTTTCTTCCAATGTCTACAAACTCATCAAACAATGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTACGTTGTTGCTCGTTTCATCACTTCTCATAATATACCAGTACACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATAC</genome_strand>
        <mrna_strand>GTTCTTCTCTTCTTTTTTTCTTCCAATGTCTACAAACTCATCAGACAAGGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTTCGTTCTTGCTCGTTTCATCGCTTCCCATAATATACAAGTACACTTCCTTTGCCTTGCTGATCGGAACCAAGATTTGAAACTTCGCATCCAAGGTGGTCTATGTGCCTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGATTTGCCTTCGATTATTATATTTATGAAAAAGCTCATCGAGCCCATTAGAAGAACTTGTATTGATATCTCTACCAATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATAACTT-G--GTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTGTAGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGAATTTACTTGCACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471055" ref_strand="+" ref_description="SGN-E471055 [cSTB-22-C24]">
      <seq>ctcatcagacaaggttgttcaccttgatgaagtgattgtagccatggtgccatttcctgattttagccatctcaatcagctcttcgttcttgctcgtttcatcgcttcccataatatacaagtaccacttcctttgccttgctgatcggaaccaagatttgaaacttcgcatccaaggtggtctatgtgcctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatgatttgccttcgattattatatttatgaaaaagctcatcgagcccattagaagaacttgtattgatatctctaccaatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtggagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgataacttggttgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="30493" stop="31601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30793" g_stop="31324" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E471055" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30793" e_stop="31324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAAACAATGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTACGTTGTTGCTCGTTTCATCACTTCTCATAATATACCAGTA-CACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTT</genome_strand>
        <mrna_strand>CTCATCAGACAAGGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTTCGTTCTTGCTCGTTTCATCGCTTCCCATAATATACAAGTACCACTTCCTTTGCCTTGCTGATCGGAACCAAGATTTGAAACTTCGCATCCAAGGTGGTCTATGTGCCTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGATTTGCCTTCGATTATTATATTTATGAAAAAGCTCATCGAGCCCATTAGAAGAACTTGTATTGATATCTCTACCAATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATAACTT-G--GTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456010" ref_strand="+" ref_description="SGN-E456010 [cSTS-28-C12]">
      <seq>gtacacttcctttgccttgctgatcggaaccaagatttgaaacttcgcatccaaggtggtctatgtgcctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatgatttgccttcgattattatatttatgaaaaagctcatcgagcccattagaagaacttgtattgatatctctaccaatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtggagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgataacttggttgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctgtagtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctgaatttacttgcacatacaaaagacaagcagtattgggctgttggtccacttcatatgttgctagaatcacgcgactctagcaacatgacgaagcatgaatgtctagaatttctagacaagcaagatgttaactcagtaatattcgtctcgtttggaacaaccactacattaacacaagaacaagtcaatgagctcgcgcttggtttagaacataagcatcataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="30614" stop="31968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30914" g_stop="31668" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E456010" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30914" e_stop="31668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGTAACT</genome_strand>
        <mrna_strand>GTACACTTCCTTTGCCTTGCTGATCGGAACCAAGATTTGAAACTTCGCATCCAAGGTGGTCTATGTGCCTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGATTTGCCTTCGATTATTATATTTATGAAAAAGCTCATCGAGCCCATTAGAAGAACTTGTATTGATATCTCTACCAATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATAACTT-G--GTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTGTAGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGAATTTACTTGCACATACAAAAGACAAGCAGTATTGGGCTGTTGGTCCACTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGCATGAATGTCTAGAATTTCTAGACAAGCAAGATGTTAACTCAGTAATATTCGTCTCGTTTGGAACAACCACTACATTAACACAAGAACAAGTCAATGAGCTCGCGCTTGGTTTAGAACATAAGCATCATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450110" ref_strand="+" ref_description="SGN-E450110 [cSTS-8-M8]">
      <seq>ctcaaacatccattttcatgatcttttagtaccttcttctcttgatgctggcaatggtttgccttcgattgttatatttataagaaagctcatcgagcccattagaagaacgtgtattgatatctctacctatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtgaagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgatcacttagttgttgatgatgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctattgtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctggatttacttgcacatacaaaagacaagcagtattgggctgttggtccacttcatatgttgctagaatcacgcgactctagcaacatgacgaagcatgaatgtctcgaatttctagacaagcaagacgttaactcagtaatattcgtctcgtttggaacaaccactacgttaacacaagagcaagtcaatgagctcgcgcttggtttagaacagagcaatcataccttcatttgggtactaagacaaagcagataaaagatggaaaccgaaaaacttgaagagaatgatgagaagattgaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="30682" stop="32046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30982" g_stop="31746" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E450110" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30982" e_stop="31746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTA---GTTG-T--TGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGTAACTTCATTTGGGTACTAAGAC-AAGCAGATAAAAAGATGGAAACTGAAAATTTTGAAGAGAATGATGAGAAGATTGAATTGC</genome_strand>
        <mrna_strand>CTCAAACATCCATTTTCATGATCTTTTAGTACCTTCTTCTCTTGATGCTGGCAATGGTTTGCCTTCGATTGTTATATTTATAAGAAAGCTCATCGAGCCCATTAGAAGAACGTGTATTGATATCTCTACCTATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGAAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTATTGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGGATTTACTTGCACATACAAAAGACAAGCAGTATTGGGCTGTTGGTCCACTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGCATGAATGTCTCGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATTCGTCTCGTTTGGAACAACCACTACGTTAACACAAGAGCAAGTCAATGAGCTCGCGCTTGGTTTAGAACAGAGCAATCATACCTTCATTTGGGTACTAAGACAAAGCAGAT-AAAAGATGGAAACCGAAAAACTTGAAGAGAATGATGAGAAGATTGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571363" ref_strand="+" ref_description="SGN-E571363 [12893]">
      <seq>caatggtttgccttcgattgttatatttataagaaagctcatcgagcccattagaggaacgtgtattgatatctctacctatgcgaagagattggttataattcatgattccataatgatggagcatataagggatgttcattcattgatcccgaacgtgaagtcttatatgttccacgccatttcagcttttgcaagatactctatgctccgacaaagtattgatcacttagttgttgatgatgatgatgatgatgatgatcatgaaaaaatgatcaaacaaatgcacgatgagtttccgttgttggagagctattgtggaccatatgcagcagcactcattagaaaagaacatgaatggaagctcaattcaggagaaatcatgaactcgtgcagagaagtcgaaagtaagtacctgggatttacttgcacatacaaaagacaagcagtattgggctgttggtccacttcatatgttgctagaatcacgcgactctagcaacatgacgaagcatgaatgtctcgaatttctagacaagcaagacgttaactcagtaatattcgtctcgtttggaacaaccactacgttaacacaagagcaagtcaatgagctcgcgcttggtttagaacagagcaatcatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="30734" stop="31969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31033" g_stop="31664" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E571363" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31033" e_stop="31664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTA---GTTG-T--TGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGC--CGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGT-GGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGT</genome_strand>
        <mrna_strand>CAATGGTTTGCCTTCGATTGTTATATTTATAAGAAAGCTCATCGAGCCCATTAGAGGAACGTGTATTGATATCTCTACCTATGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGAGCATATAAGGGATGTTCATTCATTGATCCCGAACGTGAAGTCTTATATGTTCCACGCCATTTCAGCTTTTGCAAGATACTCTATGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAGTTTCCGTTGTTGGAGAGCTATTGTGGACCATATGCAGCAGCACTCATTAGAAAAGAACATGAATGGAAGCTCAATTCAGGAGAAATCATGAACTCGTGCAGAGAAGTCGAAAGTAAGTACCTGGGATTTACTTGCACATACAAAAGACAAGCAGTATTGGGCTGTTGGTCCACTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGCATGAATGTCTCGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATTCGTCTCGTTTGGAACAACCACTACGTTAACACAAGAGCAAGTCAATGAGCTCGCGCTTGGTTTAGAACAGAGCAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740278" ref_strand="+" ref_description="SGN-E740278 [LC20DB10]">
      <seq>gtccaaggacaacttcattctcttcttcctggctatgttcaccttgcaaagagaacaaatattttcagtagtagagattgaactgcactcatgcctctcgcgcatcaagttgaccgttccgccttacgtaagcaatgccattcagccattaacttcttctttacattcattgtgtttgtaccaaatgcaggccattgtagagttcagaatcagtgattcaagtgtgaaagtctcggcaggtgtttcctggtatgcctcacaaatctacttgttttgaacaatgaacaatatgtttcattttgtgtcttacgtgtattatgtcatataggatacgcgtgtctatttgttcaattttaaacaagtttaactgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggaaaaaaaaaaaaaaaccccccggggggggggggaaaaaaaaatttcccccaagggggggggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="46802" stop="14436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46502" g_stop="46125" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46124" i_stop="41182" i_length="4943">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41181" g_stop="41135" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="425" r_length="47" r_score="0.745"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41134" i_stop="40994" i_length="141">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40993" g_stop="40969" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="450" r_length="25" r_score="0.400"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40968" i_stop="34429" i_length="6540">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.716" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34428" g_stop="34412" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="467" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34411" i_stop="34233" i_length="179">
            <donor d_prob="0.937" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34232" g_stop="34215" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="485" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E740278" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46502" e_stop="46125"/>
          <exon e_start="41181" e_stop="41135"/>
          <exon e_start="40993" e_stop="40969"/>
          <exon e_start="34428" e_stop="34412"/>
          <exon e_start="34232" e_stop="34215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTACTAATGCACACTCAAAGTTGGAGCGCATAGTTATCTGCTGAACCAAGTTAAGGATCATGTTTATGTATTATGTCTGTTTTTTTCGTAAGAATCAAATAGGTTAAGTTGCTCGGACTCTCTAATGATGCAACACTTGTATTAGATCCTCCGAAAATTCACTACTTTTGGAAGATCCAACACACAATTGTCGAGATCTTTGAAGACTTTGAGCAACATAGCAACAACGTTTTCGATATACAAACTTCAACGGCTGCAGGAGCACGCTTTCTATTAGACAAATAACCTTGGTCGACATAGAGACGTGACAGAACTATCTCTTTACGCCTCTTCTCATTAAGGAATAACGACTTGGATGTGAAATGGGTTTTGGAGGTCAGAGTAAAACGTATATTCAATCTTTGAGAGGTAGTTAGAAGCCGTTTCCAATAGACCCTTTGGCTCAAGGAAAATGGAAATATTAACCTCACTATCTTCATCAAGTTTCCATTAGCAATCAAATCAATAGAAGATAGGGCAACAAAGAAGGATTGAAAATGTCTCTCAATAGATTGAAATGACTTTCAATAATTTTATTAAGCGTTGAAGGACTTACAATAGACATCATAAACACATAATTTGAAATTTAAAACAATCTTAAATATCAAACTTATTTTGCTAAAAATTACTATTGCATAACAACGTAACTAAAAGCAAACTTCAACGGTGAAGTTATTCAATTATATGTGATATGAATGATTCCATGGCCTCGCGTGCAAGTCCTCCGTGGCTAACAGAGTTTTTGATCTTTTTGCTCAATTCCATTGCCGTTTGCCTCATTTCTTCCCCTTCTATGGTACTCGTCAATGTCTCGATAGATTTCTCTATGGTTGATGCTTTTACCAATTCATCGCGGTGAGACCAACACTTGACAGTGATTCCAATCTCCAACAAATTAGTTACAAGTATAGCGTTAAATGGCTGATCGAAACTGATTGGCCTAGTAGCTATAGGTACTCCCATGTTAATGCTCTCGATACATGAATTCCATCCACAGTGACTCATAAACCCCCCTGTCGATGAATGTCCCAAGAATTCTAATTGTGTTGCCCAATTAACCATTATTCCTCTTCCTTCCACTCTTACTTCAAACCCTTCGGGTAATTCAATCTTTACGACTTTATCTTTAAGTTTCTCCGCGTTATCTCCTTTTCTTAGTACCCAAATAAATCTACGGTTGCTCTGTTCTAAACCCAGAGCAATCTCATTGACTTGCTCTTGTGATAACGTAGTCGTTGATCCAGATGAGATGAGTATCACCGAGTTAACATCTTGTTTGATTCGAGAAATTCTAGGCATTGATCATAACGCAGAGTGATGTTGCTTGATCGCGATCATTTTTTTGCGTTGGAGATGAAGGTCTCAACAGGTTATCGAAATAGATGTTTGAAGCTCTTACATCACCTTGAACGCGAAGTTTCAAATATTCGTTAACATTAGCAAAACAGAGGAAATGTACTTGTAATTTCATTTTTAACTGAGATCGCCCTATGATGAGAAATATATATATATTTTTATTTGTCTTGAATGAGCTTTTCTAACTTTCGATATTTATTTTTGTAATCGATTAAACCTAATATAGCTTGATTTTTTTTACAACGTATGCTTCATAAAAAGTATAATTGATATGAATGATTATATTGTATCGACAACTAAGCATAGGACCAACCAAAGAAGATAAGGTAAGATGCACCATGCCACTCATTTCATGAACATTTATAATAAAAAGATATGATGTGATATGTAAATCTAGGATAAGTTAATTAAATATTAGTTTCGTTTTATATTACTTGATTTATATAAATGATATTTTCATATATAAATAAATAATGATACTTTTCTTTTGAGCTAAGGGTGTATCGAAAATATTTTTTCTGCTTCACGGGGGGGGGGGGGGGGGTAATGTGTGTCTTTTTTATTGTAATACTGGCGAAATTACAATGAATATGTCGTTGTAATAAAAATTTGTGATGCTAAGTGTTCCATTATGAGGAAAATGTGTGATGCATGTGTTAAGCTCATGTAGCTATCTACCTTTGCGGAATTCCGTTTTTAATCCTCGAGAGTAGTATATAAGAATCTTGTTCAATTTCTAAATACGTGCAATTTTTTTTTTAACTGAGATTACCTTTTGATGCAATATATGTTTTTGTTAACGAGAGAAAGGAGACTGAGATGTAGTTTGGACATGTGAATAGGAGATATGTGGATGTACTACTAAGGAGGTGTAAGAGGTTGGCTATTGTAGGATTTACGAGGGGTAGAAGTAAGTCGAAGAAACACTAGGTAGAGCTGATGAAACAGAACATGATACATTTCCATCTTACTGATGACATGACCATAAATACGAAGATATAGAGATTGGGAATTAGGGTAGAAGGGTAGTAAAGTAACTGAGTGTTGTCATACTTTTATGTGGGATGGGCGAGGCGTAAGTCCCTTCTTGTTTCTTCATTTGCTTTGTGTATCTTGTCATTTTATTGTCATTATTTTCATTTTTATCTTGTTTTGTCTACATTTCTTTTGAGATGAAGATATATCGAAATCAATTTCTCCACCCAGTGAAGGTAAGATATGGTCTCCATACATCCTTCGCCCCCAGATCTCACCTATAAAATTACACAAAATATGTTATTATATTGTTGTTGTTGGGACGACCCTTTCTAACTTCTAATTTTCGTTCGATGTTCGTTGCTTTAGCTAATTATCTTTTAAATAACTTGAGGATAAATATAGAAAAAAAAAGAGAAGACAGTTGGACCATTTATAACCAATGAAATTTTGAATCAGATTTAAGAGTACAAAGTTGAATAACTATTTTATTCCTATATTAAATTAAAACCATATATTACTAACCATTTAATTACTAATAAATTATTAAAAAGTAATTATATCATATTATACTAATACTAAATATAAACTCTCCAATAAAAGCGAAAATATATTGAGTCAAGATGTAAAGCTCCCTCAGAAAAAATACCCTTTAAATACTATTCCTCCCGTTTCATTTTTTATGACATTGTTTGACTTTGACATGTTTTTAAGAAAAGAAGGAAAATATTTAAAATTTGTAGTCTAAAACATTTGTATGGTTGTAAGTCATTTCATTAAGAATAAAACAGATATTTTAAAGTTAAATTATTTTTAAGAGACAAGTATCAAAAACACGCCTAAACTATACATTTTTTTTTGTGTTTCATACCTAAGCTATTGAAAGTTTGAATTTCATACCTAAACTGTCACTTTTTAGTTTGAGAAACACATCTCTCTCTTTTATACCACTCTCATCATAGTATGTGTAATACACACTCTCTCTCTCTTTTATTTTAGGCTTAAGTCATATACCACCCCTCAAAGATGTCCGCATAATTCACTTAGACACCTCAACTGAGATTTGTACCTGTTGAACACCTAAATTGTTCAAAACATGTACCTATTAGACACAAAATGCTGATATGGCAAAAACTGTTTATTGCACTTCCCTGAAGCGCGTGAAAAGACTTAAAATAGTGTCTTTTTCATTTTTTTTTACATTTTTTCTTCTTTTATTGACACTTGGCATTATAAATAACTTAAAAAATATTTTCTTCTTTATTTACATTTTTTTCAAAAAAGAAAACATCTCACTCCCTATCTATCATCTTCTTCATAATTTAGTTTACAAAACTTTCTTCATTTTAGCTCTAACACAGTTTTTTTTCTTTTTTATATACAAAAAATTTATATTTTCCAAATATGAAGATAAATGAAAATTAACTATAAAGATTCAGATTTGAAAGAAAGTCTTAGTATGATTTATTTCAAATCTCATAAAAACAAGGAACAAGTATGAAGAAGATGAAAAAAGATAAATGATTTTTACGTATAAAAATAGTTACCCGAGAATTATTTATCACAATTTTTGAACAAAGATTTTTACTCAAATTCATATGTGGTAATTAAATTTATCAAAAATGATATAAAATTTTTTGAAAGAAATAATTTTGAAGCTATCAATTTCATTTTGTCATCGACGTAGAGTTGAATAATCGCCAACAAAAGTTTCTTCACTCTTAGTATATAAAAAAAAATTAATCTTGAAGTTATTTGAAAAGAATAAGATTTTTTAATTTGAGAAAGAATGTGTTTTGGAAAGAAGATGAAGATGAAAGGGGGTTGCAGTGGGGTGGGGTAAGGTGGGGTAGAATAGGTTGACATTTTCATTTTTTTTTTCTTTTTTAAAAATTAGATATTAAATGTGTGTTTTTTTTTTTATAATTTTTTGGGCCCAATGCCAAATGTTATTTTTTTTAATTAGACATGTTGCCACATCACAGCAAGTGTATCACACACTCTTTACATTTTTTGTTGATTATCAAAAAATGTCTAATAGAAACGATTATTATATAGGTAAAAGTGTTCAATTGGTACACTATTAGTTAAAGTGTCTAAGTGAATTATGCGGACAACATTAAGGGGCCGCTGATGACTTAAGTCTTTATTTTAAAAAATTTCCACATCACACTGCACATTGACAAAACATTCAACCTTGACAAAATATAAATAAATTATTATTATTAGTTAAATTAAAAATTAAAAAACTATTATAAAAAATAATATTTTCTTTATAAAATAAAATATAAAATATTTTTCTTACCCCACACAATTTTTTAAAGTTTTTTATTTTCTTTGAATTTCTTTTATAAAATATTTCATTTTTACTTCATCTCCTCCCCCTCCTCAATACTAATTTAGATATTATTTTATTTTCTTAAAAATATAATTCTACCATGCCACTTAACCCTCTGCTTTTAATTTTTTTACCAAGTGTTTAGATATACATATAGAAAATAGTTTTACTTGTTTATTTTATATTCGGTACACTATTAAAAAAAAAATTCTAAAAATATATGTACCGTGCATATCTAACACAAAATAAGAAAAACGTAAAAAAATAAAAATTAGGAGCGAAAAATTAAATAGGATGGGATAATTTTTTTTAAATAAAATAATATCAATTTCTATCGGGAGGGGCGGGGGGGGGGGGGGGGAGGATGGAATATGAAATATGAAAATTTTAAAAATATTGTATAAACAAATGATTTTTTTATAAAAAAAAGGATGGTGTTGTTGCGGGGAAGGGGGGTACGTGGAGGATGTTGGAGTGAGATAAGAAAAATAATTTAATTTTTTATTTGGATATTAATCTTTAATTTTTAATTAATATTAATTTTTTATTATTTAATTTTTATCTAGATAAAATATTTTATCTATGTGGAATGCCATGTGTCGAAGTTTTTTCATATAAAAGAGAGAGTGCATTACACACACTACTGAGGTGTGTTTCTCAAACTAAAAGTGATAGTTTAGGTATGAAACTCACACTTTCAATAGTTTGTATGAAACTAAAAAAAAAACAGAATTGTTTAGGTATATATTTGACACTTATCTCTATTATTAACTATAGTAAAATGTCATTTTTTGAAACGGATAAAAAATAAATAAAAGGAAAAATGACAGATATATCACCTTTAAGTTTTCTTATTACCATTATTCCCTATTAGTTTTATAAGTTCTCAAGATTTCTCATTTTCACACATCAGATTAATGTATCAGCGCATCAAATTAATGTATCATATTTAAAATATACATCAGATTAGTGTATTATATATAAGATGTAATGTATCTTACTTAACGATTAATGTATCTCGCGCATCAGATTAATATATGAGCGTTTATATTATTGTATTATTTTGAGGGATTTCTGTAATTATAAGTTTATATCAGATAAATGATAATTTTATCTTAAAAGTATGTAATTTTTGTCTTTTGGCCAAAAAAATAACAAGTAAAATGAAACGGAGAGACATAAACTTTTAGTTAGCCCATCATCCTAAATCAATACTCTACACGTTGGAATATAATAACCATAGCCCCCCCACCAAATTCTAATAACCAAAACCCCACATTTCTTGTCTATATTAACGTAGAATGATAAATACTAGTAAATAATTATTATTATTCTAATAAAATCAAACCCCACATATCTTGTCTTCATTAAAATAGAATTGATAAATACTAATAATTGCTATAATTTTAATAACTAAAACCCCACATTTCTGGTCTCTATTAACATAGAATAATATATACCAATAATTGTTATGGTAAGTGATATTTGTAACTTGCTTAGTTTCATTTGTAAGTAATTAAATTGTTTATAATGCATAGTAGAATCAGGAAAAAATCTTTTGGTCATAAAATTTTGACAGAATTGATATCTTATCTATGTTATTTTGTTTTTTTGAACAATTTTACCTTTTTAATTTTTATTTATGTTATTTTATCTTTTTGAACAATTTTACTTTTTTAAACTTTTATTTATGTTATTTTATCTTTTTGAACAATTTTAGCTTTTTAACTTTAGTACTCTTTCGGTTCCTATTTACTTGTCCATATTTTCCTTTTATATCTGTTCTTATTTACTTGTCGATTATAACAAAAATTAAGAAAGGACAATAATTTTTTTCCTAATATGTCCTTGTTTAATTTTAGAAAATTTCTAGTACTACTAAGTTGTAATGCATGCTTTTTGGAATCAGAAGATACATTTATTATACTTGGGGAGTTGCATAATCTTTTAAGTTAAAGGTAAAATTGTAACTAACTTATGATAATAATTGATGTCTTAATATACGTGTCACTTCTAGAGTGAACAACTAAATAGAGACAGAGGATGTACATTTTAACTATAAAATAGAAAAAAAGATCAATTTATTTTAAAATAAAAAAATTATAATTACACGTATCAATGACATGATTAATTAATTAATGTGTACTCTTTGCTAATTTTGAGAAACAGCCTTGTTTATTGCACCCTTATGCTTTAATCAAGATGTTATCTTGGAGATTGAGATTAGTCCACTCTAATTTGTACTTTATTGGTTTATTTTTAATTATCATGTTAAGTTCTTCGAAAGTCAATTTCACTAGTTTTTAAAATTAAAATTAGATTACGTTAATTTAATATTTAAATAAAAAAATTAGATATTCAAAAACTATAAAAAAAAATGCTATAAATTATATTTTTTCATAAATCAACATGATTAAAAAAAATTCATTAACTTAAGAAATTGATTCAATCTAATTTGTCATTAATTTGGTTAAATAAATTTGAAGATTAAATCATTGTTAGTGAAATTTCTCATAAACTTTTAGTCATTACTTAGAAATTATAATGAATTTGTTCCGAAATAACCACACAATTTTATATTATAATTCTGGTAATTCGTTAAGGACTTATGACAAGCAATATTAGTTATTCAATCTTTTATTCTAAATAAAAATACATATTATTTAGTAGAGTTTTATATTACAAAATAGACATATTATTAATTTACATGAAAAACTTAGCTTCTGATTAATTATTAATATAATATTACATATTTGTTATTTAATATCAATATAACTCACCGCTAAATCAACACACAAAGCCAGATCTCTGTGATTTGTTGAGTTAAAAATAATAATATATAGGAGTATTTAAATTGATTTCTCCACATGATGAGGATCTAATTATCATAATGGTTCAACTTGTAAGATAGGATATGATAAAAAGGACAAACATCAAATCATTTTCAGATTTGTGAATTTAAAATTATTTTTTTTAAAAAAAATATTCAAGTCAAATTGAGTTAATAATTCAATATTTTTTTTAATATTATATACGTAAATCTTTTGAAATGTGTCCAATCAATGCTAAAAGCCATAATTATCAAAATTATTGAAATAAACTATTTGATTTGTCTATATACAAGTCTAGCCCCTCATATTAAACCAAAATTCTTGGAATATAGTCCCTCATTTATTGGCTTGCATTAACATGTGGAAATAACTACAACCGTCCATATTCTAATACTCCGTCCGTCCAGTATTATTTATAGTCAAACTATAAAAAATTTTATTAACATTTTAAGATGTATTTTTTCATCATATTAATATGCAAAAAACTGTAATTTATAGTACTTTTCATATAGTTTTAGAATATCTAATTTTTTTATTTAAAATATCGAATTAATGTGATTTAATTTACCTTTGAAAATTAATCAAATTGATTCGATAAGCGCAACATGACAAATATTTTCGGACGGAGAGAGTGAACAAATTTTTTTGTTATATTGACATGTTTTCTAGTAATTATAACCCTCCAATACATGTTTTAGCTTTTTAGTAAGCAAAAATTAGTTTGATGAGTGTTTTTGACAAATAATTATTAATTTTAGTAATATTTTTTTATTTATTATTATTTAGAGTAATACTATGTTGATTTGTAATATTTATTAAAAGTGAATTAAGTATACAATATATATATGTATTATAACTGCTTTGAAAAATATATTATGCTTGTTTAGTAAGAAGCTGACACATTGTCTTATGAATGTATTAAAAATGTGTGATAAATGTATTATCCATTAATAAAACTTGTATATATGTGAATAATAAATTGTTCTTTATAATATGAATAAAAAATGTATTATAAATGTATTAAGAGTGATCAAGTGAATTTTTTTTTATTACTATAAATAATGAATGTTTTTAATTTATAGTATATTTATGTAAGGTTCTATAGTAATTACACTATAAAATTGGGCTTTGGGTCACTTTGGACTTAAGTCAAGTATATTATTGCTTAATTTTTTTTTTCAATAAATGGGCACGGCCCAATTAGGGATAGCAATGGAGCGGATAGAAGCTTAACCCATAGAATTTTAATCTGCGCCGCTTAACATTTTTTCTATTCTTAACCCGCCCAGCAAAAACCCGCCCCACTTATGTTATATCGATTTTTTTCTTTTCTTTATTATATTATTTGCTGAAACAGTACACAAATTTAACATTTTATATCTTTTTTAATAGTGAAGATCTAGAGTAATTATATTTTTAATTGTTGTTTTGTTAAAACACACCAATTAAACAGTCTGTACACCTCTAGCTGGTTATATATCATAACTAAATTCTACTTTGTTTACAAATCATTTCAATTAAATTTTCTGAACTAAATTTGAGTACTTCTTTCAAAATTAAATTAAAAGTGAGAGAAAAATATTTCAACTCGTCACCCGCTCCGCCTGCTAAATTTCTTTAAAAAATTATTTCAACCCGTCTCATAACTACCACACATAAGGTTAAACCCGCCAGACATAGACTTAGACCTGCCCGGCCCCGCTCCATTGTCATTTCTAGGCCCAATGCTTTTGATTAAAAGAAAAAAAGACACTAAAATTAATAAAGTCGCATAACGTCTAAAAATTGGCCTTTAAATACGAAAATATGACATAACAATGGTGGGAATATTTGTAATGTTTCCCCAACATATTAGGGAGGTCGTCATGAAGTTGGCTCATAAATGTGAAAAAAATGTCTTAAAATGGTGGGACTATACGAGGTGCTCCTCTAACTCATTACAAATAGGAGGTTCTCATAAAGTTTTTTTTTTTTTTAAAAAAAATATTGATATCATGACTAATACACACGAAAAAATCAAGAAAGCCGCACAATTTTTAAAATTTGCTCGTAAATGTGAAAATATGTCTTAAAATGGTGAGACTATACGTAATGTTTTCCCAACTCATTACGAAAATTCTCATAAAAGGATTTTAGAAGAAATTTTCTAGTGCCCAAGGCGCTAGATCCATGGCTAATACACACAAAAAATCAAGGAAGTCTCATAATTTCTAAAAGCTGGCTTGTAAATACAAAAATATCTCTTAAAAAGGTGAAACTATATGTAATACTCCCCCAACTCATTAAGGAGGTACTAATAATTTTTTTTCAAAATAAAACTTTCGGGTGCTTCAAGGCGCAAGATCCATAGTCTAATACACGTGAAAGAGTTGGCTCATTGATTTGAAAATATACCTTAAAATGGTGGGACTATATGAAAATGTTCTTCCAACTTATTATGGAAGTCCTCTTAAAGTTATTTCAAAAAAAATATCGGATGTCAAAGGCCCTAGATTCATAGGTTAATCATATATTATTATAAGCATGAAGCTCAAAACTTAAAAGTTGAATTACCATTTTATCCCTCTAATAAATTAATTTTTTTTATAATTTTCATATATATAATCTTCTTATTCTCATTCCATAATCTTGACCTTTCAAATTTCTAACATAAATGTAAATAAAAATAAAAATTAGTAATTATTCCTTATAGAGAAGAAATTAAAGTAGATTCATGTATCTTTAAAATTAAATTTCATCTCTATCTTTTTTTATATTTATTTTAATAATAATTCATGTGACTTTTCATATTTCCATAATTTTGTTCTATAAATTTAACTTTTTGAAGAAAATTTTTTATTTACCACTCCTATAATTCTTGTGTGTAGGAACTCTAAACATGTGAAATAATATCACAATTTGAGGTGAAAGTTGTGAGATTCCCTTCTGTAGTCACGAGAATAGACAAGAATTCAAATTACTGAAGCATCGGAGCTTGGTGTGTTAGTTCTATACTTATTTGTAGTAAGAATTATAATAAGACTTTTTTGTCTCTATTCATATAGTTGAATTCTTGATTTATTAGCAAGTTGCTCTAAATTCATATTTGTATTTTGTATGCTCAAATATTCAGTTTTACTATAGAGACAAAAATAAAATGAAATGTCTAATTATCTTTCTCATTTGTACCTTTTCTTTTTTTCTTTTTGCTTCGTACTTATAATTTTACATATACATTAATTTTCATCTTTAAGAATGAATTTGATAAAATAGGATGTTTATTCTTTTCTTTTCTTTTTATGGAAAAAAAAGGTGAAACATATAATATTAGAATAATGTTGGATAAGTTATGTATGAAGAGAAAATTAAATTTTATATAAAAATAGTAGTTATTCATAAATATTCTGATTTTCAAAATATAAATAATAAGAGTTTTTACATCATACTTTTAAATATTTATAGTTAACTAATTAGTTTAAAGTGTTTGTGGATTAAAATTTAATACAATACTTTAAACACATTCATTATAATTATCAGGAGATTCAAAAGGCAAAATAAAAAAGTTGAAAGGATTTGTTTTCTTTTTACTCAAAGTTAATCTTACACTATTTCTTCTAACATTATTCTACCAATAAAACGGAACTATCGAGAAATTTAATTTAGATAGTTGTTATTTTTCCTTTTTGCTTTGAAAACTTATTTTTTGAATTATAAACGAAGTTTATTTTATTAATTTCTCATATTATTATCTTGATGCATTTATTTGGAGGTTAGAAAATTGGAGTGTCACAATTAGTAGTAAAATAAAGTAAGAAATCTGGAGTGTCACAATTAGTAGTAAAATAAAGTATGAAATCTCAATTAAACATATTTTATTATTTAGTAATATTATCTTTTAAGAAATAATACACTCATGGGTTGCACGCTCAGAAACTAGTACACACTAAAAACACCAAAGTTGCATGATTCCTAAAAGTTGACTCTTTAATAAAATGGTGAGACTATATTTGATAATCCCCAACTCATTATGAAGCTCCTCATAAAGTTTTCCGAAAAAAAAAATTTTCTGCTGCCCCAAAGGCACAAGATGCATGACTAATACACAAGAAAAATACAAGTCAAATTTTCCCTTCTATTTGAATCAAGAGAAAACAAAATGATGTAAGTACAAAACTGTTTGGGCAGCAAACAAATCAACCCAAGTAAGAAAAATTAATCAACACACGAGATATCAAATTTAACGTGAAAACCCTCTTTGGTGTGAAGAGTAAGGCCAAAGCTTCACTAAAATCAACAAGAGTTACAAAAATGTTATCCAAAAATGGTCACTAACAAAGTGCCTAACAATAAATCAATATGGCAATTTGAAATTGATTGTTAGGGCTTGTGAGAAAAAATC</genome_strand>
        <mrna_strand>GTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGAAAAAAAAA.............................................................................................................................................AAAAAACCCCCCGGGGGGGGGGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAATTTCCCCCA...................................................................................................................................................................................AGGGGGGGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226335" ref_strand="+" ref_description="SGN-E226335 [cLEL-26-J5](-)">
      <seq>tctttcaaaattttttatatcatttttgataaatttaatgagcacatatgaatttgagtaaaaatctttgttcgaaaattatgataaataaatatttttatacgtaaaagtcatttatcttttttcatgttcttcatacttgttccttgtttttatgagatttgaaataaatcatacgaagacttctttcaaatctgaatctttatatttgattttcatttatcttcatatttggaagataaattttttttgtatataaaaaaagaaaaaaaaagtgttggagctaaaatgaagaaagttttgtaaactaaattatgaagaagaagatagatagagagtggggtgttttcatttttgaaataaatgtaattaaagaagagaatttattttaagttaattataatgccaagtgtcaataaaagaagaaaaaatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="41817" stop="42878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42117" g_stop="42578" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E226335" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42117" e_stop="42578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAAAAAATTTTATATCATTTTTGATAAATTTAATTACCACATATGAATTTGAGTAAAAATCTTTGTTCAAAAATTGTGATAAATAATTCTCGGGTAACTATTTTTATACGTAAAAATCATTTATCTTTTTTCATCTTCTTCATACTTGTTCCTTGTTTTTATGAGATTTGAAATAAATCATACTAAGACTTTCTTTCAAATCTGAATCTTTATAGTTAATTTTCATTTATCTTCATATTTGGAAAATATAAATTTTTTGTATATAAAAAAGAAAAAAAACTGTGTTAGAGCTAAAATGAAGAAAGTTTTGTAAACTAAATTATGAAGAAGATGATAGATAGGGAGTGAGATGTTTTCTTTTTTGAAAAAAATGTAAATAAAGAAGAAAATATTTTTTAAGTTATTTATAATGCCAAGTGTCAATAAAAGAAGAAAAAATGTAAAAAAAAATGAAAAA</genome_strand>
        <mrna_strand>TCTTTCAAAATTTTTTATATCATTTTTGATAAATTTAATGAGCACATATGAATTTGAGTAAAAATCTTTGTTCGAAAATTATGATAAATAA----------A-TATTTTTATACGTAAAAGTCATTTATCTTTTTTCATGTTCTTCATACTTGTTCCTTGTTTTTATGAGATTTGAAATAAATCATACGAAGAC-TTCTTTCAAATCTGAATCTTTATATTTGATTTTCATTTATCTTCATATTTGGAAGATAAATTTTTTTTGTATATAAAAAAAGAAAAAAAAAGTGTTGGAGCTAAAATGAAGAAAGTTTTGTAAACTAAATTATGAAGAAGAAGATAGATAGAGAGTGGGGTGTTTTCATTTTTGAAATAAATGTAATTAAAGAAGAGAATTTATTTTAAGTTAATTATAATGCCAAGTGTCAATAAAAGAAGAAAAAATGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740498" ref_strand="-" ref_description="SGN-E740498 [LC21CG03]">
      <seq>ttttttttttttttttttttttttttttttttaagcagttaaacttgtttaaaattgaacaaatagacacgcgtatcctatatgacataatacacgtaagacacaaaatgaaacatattgttcattgttcaaaacaagtagatttgtgaggcataccaggaaacacctgccgagactttcacacttgaatcactgattctgaactctacaatggcctgcatttggtacaaacacaatgaatgtaaagaagaagttaatggctgaatggcattgcttacgtaaggcggaacggtcaacttgatgcgcgagaggcatgagtgcagttcaatctctactactgaaaatatttgttctctttgcaaggtgaacatagccaggaagaagagaatgaagttgtccttagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="14436" stop="46802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44262" g_stop="44282" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.524"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44283" i_stop="46118" i_length="1836">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46119" g_stop="46502" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="405" r_length="384" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E740498" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740498" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44262" e_stop="44282"/>
          <exon e_start="46119" e_stop="46502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTATTTATATATGAAAATATCATTTATATAAATCAAGTAATATAAAACGAAACTAATATTTAATTAACTTATCCTAGATTTACATATCACATCATATCTTTTTATTATAAATGTTCATGAAATGAGTGGCATGGTGCATCTTACCTTATCTTCTTTGGTTGGTCCTATGCTTAGTTGTCGATACAATATAATCATTCATATCAATTATACTTTTTATGAAGCATACGTTGTAAAAAAAATCAAGCTATATTAGGTTTAATCGATTACAAAAATAAATATCGAAAGTTAGAAAAGCTCATTCAAGACAAATAAAAATATATATATATTTCTCATCATAGGGCGATCTCAGTTAAAAATGAAATTACAAGTACATTTCCTCTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCAATCCTTCTTTGTTGCCCTATCTTCTATTGATTTGATTGCTAATGGAAACTTGATGAAGATAGTGAGGTTAATATTTCCATTTTCCTTGAGCCAAAGGGTCTATTGGAAACGGCTTCTAACTACCTCTCAAAGATTGAATATACGTTTTACTCTGACCTCCAAAACCCATTTCACATCCAAGTCGTTATTCCTTAATGAGAAGAGGCGTAAAGAGATAGTTCTGTCACGTCTCTATGTCGACCAAGGTTATTTGTCTAATAGAAAGCGTGCTCCTGCAGCCGTTGAAGTTTGTATATCGAAAACGTTGTTGCTATGTTGCTCAAAGTCTTCAAAGATCTCGACAATTGTGTGTTGGATCTTCCAAAAGTAGTGAATTTTCGGAGGATCTAATACAAGTGTTGCATCATTAGAGAGTCCGAGCAACTTAACCTATTTGATTCTTACGAAAAAAACAGACATAATACATAAACATGATCCTTAACTTGGTTCAGCAGATAACTATGCGCTCCAACTTTGAGTGTGCATTAGTAAGCAGTTAAACTTGTTTAAAATTGAACAAATAGACACGCGTATCCTATATGACATAATACACGTAAGACACAAAATGAAACATATTGTTCATTGTTCAAAACAAGTAGATTTGTGAGGCATACCAGGAAACACCTGCCGAGACTTTCACACTTGAATCACTGATTCTGAACTCTACAATGGCCTGCATTTGGTACAAACACAATGAATGTAAAGAAGAAGTTAATGGCTGAATGGCATTGCTTACGTAAGGCGGAACGGTCAACTTGATGCGCGAGAGGCATGAGTGCAGTTCAATCTCTACTACTGAAAATATTTGTTCTCTTTGCAAGGTGAACATAGCCAGGAAGAAGAGAATGAAGTTGTCCTTGGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTAAGCAGTTAAACTTGTTTAAAATTGAACAAATAGACACGCGTATCCTATATGACATAATACACGTAAGACACAAAATGAAACATATTGTTCATTGTTCAAAACAAGTAGATTTGTGAGGCATACCAGGAAACACCTGCCGAGACTTTCACACTTGAATCACTGATTCTGAACTCTACAATGGCCTGCATTTGGTACAAACACAATGAATGTAAAGAAGAAGTTAATGGCTGAATGGCATTGCTTACGTAAGGCGGAACGGTCAACTTGATGCGCGAGAGGCATGAGTGCAGTTCAATCTCTACTACTGAAAATATTTGTTCTCTTTGCAAGGTGAACATAGCCAGGAAGAAGAGAATGAAGTTGTCCTTAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537750" ref_strand="+" ref_description="SGN-E537750 [TUS-56-I5]">
      <seq>ctgttttgctaatgttaacgaatatttgaaacttcgcgttcaaggtgatgtaagagcttcaaacatctatttcgataacctgttgagaccttcatctccaacgcaaaaaaatgatcgcgatcaagcaacatcactctgcgttatgatcaatgcctagaatttctcgaatcaaacaagatgttaactcggtgatactcatctcatctggatcaacgactacgttatcacaagagcaagtcaatgagattgctctgggtttagaacagagcaaccgtagatttatttgggtactaagaaaaggagataacgcggagaaacttaaagataaagtcgtaaagattgaattacccgaagggtttgaagtaagagtggaaggaagaggaataatggttaattgggcaacacaattagaattcttgggacattcatcgacaggggggtttatgagtcactgtggatggaattcatgtatcgagagcattaacatgggagtacctatagctactaggccaatcagtttcgatcagccatttaacgctatacttgtaactaatttgttggagattggaatcactgtcaagtgttggtctcaccgcgatgaattggtaaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44345" stop="45560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44645" g_stop="45260" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E537750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44645" e_stop="45260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATC</genome_strand>
        <mrna_strand>CTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266823" ref_strand="+" ref_description="SGN-E266823 [cLEI-7-H23]">
      <seq>tgttttgctaatgttaacgaatatttgaaacttcgcgttcaaggtgatgtaagagcttgaaacatctatttcgataacctgttgagaccttcatctccaacgcaaaaaaatgatcgcgatcaagcaacatcactctgcgttgtgatcaatgcctagaatttctcgaatcaaacaagatgttaactcggcgatactcatctcatctggatcaacgactacgttatcacaagagcatgtcaatgagattgctctgggtttagaacagagcaaccgtagatttatttgggtactaagaaaaggagataacgcggagaaacttacagataaagtcgtacagattgaattacccgaacggtttgaagtaagagtggaaggaagatgaataatggttaattgggcaacacaattagaattcttgggacattcatcgacaggggggtttatgagtcactgtggatggaattcatgtctcgagagcattgacatgggagtacctatagctactatgccaatcaatttcgatcagccatttaacgctatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44346" stop="45488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44646" g_stop="45188" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E266823" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44646" e_stop="45188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACT</genome_strand>
        <mrna_strand>TGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTGAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTGTGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGCGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCATGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTACAGATAAAGTCGTACAGATTGAATTACCCGAACGGTTTGAAGTAAGAGTGGAAGGAAGATGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTCTCGAGAGCATTGACATGGGAGTACCTATAGCTACTATGCCAATCAATTTCGATCAGCCATTTAACGCTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401310" ref_strand="+" ref_description="SGN-E401310 [PPC-3-B24]">
      <seq>tagaatcacactctaattcgtctagcaacatcactcgtcatgatcaatgcctagaatttctcgacaaacaagatgttaactcagtgatattcatctcgtttggatcaaccactacattatcacaaaagcaagtcaatgagattgctctgggtttagaacagagcaaccatagatttatttgggtactaagaaaaggagataatgcagagaaacttanagaaaaagacgtaaagattgaattacccgaagggtttgaagagagagtggaaggaagaggaataatggttaattgggcaccacagttggaaatcttggggcattcatctacgggtgggtttatgagtcactgtggatggaattcttgtatcgagagcattagcatgggagtacctatagcaacatggccaatcagttttgatcagccatttaacgctatacttgtaaccaatttgttgaagattggaatccctcgtcagagtaggtctcaccgggatgaattgataaaagcatcaaccattgagaaatctgtcaagacattgatgagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44471" stop="45596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44770" g_stop="45296" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="547" r_length="522" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E401310" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44770" e_stop="45296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTAC</genome_strand>
        <mrna_strand>CAACATCACTC---GTCATGATCAATGCCTAGAATTTCTCG-A-CAAACAAGATGTTAACTCAGTGATATTCATCTCGTTTGGATCAACCACTACATTATCACAAAAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCATAGATTTATTTGGGTACTAAGAAAAGGAGATAATGCAGAGAAACTTANAGAAAAAGACGTAAAGATTGAATTACCCGAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCACCACAGTTGGAAATCTTGGGGCATTCATCTACGGGTGGGTTTATGAGTCACTGTGGATGGAATTCTTGTATCGAGAGCATTAGCATGGGAGTACCTATAGCAACATGGCCAATCAGTTTTGATCAGCCATTTAACGCTATACTTGTAACCAATTTGTTGAAGATTGGAATCCCTCGTCAGAGTAGGTCTCACCGGGATGAATTGATAAAAGCATCAACCATTGAGAAATCTGTCAAGACATTGATGAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537747" ref_strand="+" ref_description="SGN-E537747 [TUS-56-I5](-)">
      <seq>ttagaacagagcacccgtagatttatttgggtactaagaaaaggagataacgcggagaaacttaaagataaagtcgtaaagattgaattacccgaagggtttgaagtaagagtggaaggaagaggaataatggttaattgggcaacacaattagaattcttgggacattcatcgacaggggggtttatgagtcactgtggatggaattcatgtatcgagagcattaacatgggagtacctatagctactaggccaatcagtttcgatcagccatttaacgctatacttgtaactaatttgttggagattggaatcactgtcaagtgttggtctcaccgcgatgaattggtaaaagcatcaaccatagagaaatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggcaatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcaaattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaatctattgagagacattttcaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44602" stop="45901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44902" g_stop="45600" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E537747" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44902" e_stop="45600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCA</genome_strand>
        <mrna_strand>TTAGAACAGAGCACCCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541505" ref_strand="+" ref_description="SGN-E541505 [TUS-62-F9](-)">
      <seq>gaatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggcaatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcaaattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44972" stop="45880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45271" g_stop="45579" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="322"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E541505" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45271" e_stop="45579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</genome_strand>
        <mrna_strand>GAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541508" ref_strand="+" ref_description="SGN-E541508 [TUS-62-F9]">
      <seq>gaatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggcaatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcaaattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44972" stop="45880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45271" g_stop="45579" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="322"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E541508" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45271" e_stop="45579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</genome_strand>
        <mrna_strand>GAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297867" ref_strand="+" ref_description="SGN-E297867 [cLET-38-N22]">
      <seq>aatctatcgagacattgacgagtaccatagaaggggaagaaatgaggcaaacggccatggaattgagcaaaaagatcaaaaactctgttagccacggaggacttgcacgcgaggccatggaatcattcatatcacatataattgaataacttcaccgttgaagtttgcttttagttacgttgttatgcaatagtaatttttagcaaaataagtttgatatttaagattgttttaaatttcacattatgtgtttatgatgtctattgtaagtccttcaacgcttaataaaattattgaaagtcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="44972" stop="45880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45272" g_stop="45579" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="321"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E297867" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45272" e_stop="45579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</genome_strand>
        <mrna_strand>AATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCCATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCACATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687897" ref_strand="+" ref_description="SGN-E687897 [T3_tus_81_I19]">
      <seq>taaaaaatggtccaatattatatttgtttttttctacattatctttggtatttattagtatgttgcatccctgtttgtattgtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcanacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaaatcaactctaacatcactccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48219" stop="49667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48519" g_stop="49367" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E687897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48519" e_stop="49367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCG</genome_strand>
        <mrna_strand>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCANACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAAATCAACTCTAACATCACTCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327798" ref_strand="+" ref_description="SGN-E327798 [cTOC-20-N3]">
      <seq>aaaaaatggtccaatattatatttgtttttttctacattatctttggtatttattagtatgttgcatccctgtttgtattgtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48220" stop="49513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48520" g_stop="49213" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E327798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48520" e_stop="49213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATG</genome_strand>
        <mrna_strand>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597180" ref_strand="+" ref_description="SGN-E597180 [40679]">
      <seq>tgtatgtccagaactcatttttctcagagttctttctccttttgttgctatggctgctaccaatgaagtgattgtagccatgngtaccattttttgattacagccatctcaataacctcattgatcttgctcgtttcatcgcgtcccataatataccagtacacttcctctcctttgttgatatgaaccgagatttggaacttcgtctccaaggtagtctcggggcctcaaacatccatttcgaaaaccttttgagaccttcttctccaacagaaaaagatgttcgcgatggagagcctccgattctaatgtttctggaaaaactaacgaagcccattaatgaaatatgtgttcaactctcaactaaggcaaaaaaattagtcataattcatgaccttataatgagtgaacaagtaatggatctaaatacattgttgaatgtcaagtcttatatgttccacaccggatcgacttttacagatattcttccctcaaacaaactattcctgacataattgatgatgacgatgatcatgtcaaattgatcaagcaaatgcaggatgagtttccgttgttggagccacatgagaaatattgttttcaaatggagcttgattatccggatatccattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgccaaagcaaaaagcaagccgttatgggcttttggtccatttcatatgtttgtagaatcacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48294" stop="49652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48594" g_stop="49352" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E597180" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48594" e_stop="49352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATG-GTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTC</genome_strand>
        <mrna_strand>TGTA-TGTCCAGAACTCA-TTTTTCTCAGAGTTCTTTCTCC-TTTTGTTGCTATGGCTGCTACCAATGAAGTGATTGTAGCCATGNGTACCATTTTTTGATTACAGCCATCTCAATAACCTCATTGATCTTGCTCGTTTCATCGCGTCCCATAATATACCAGTACACTTCCTCTCCTTTGTTGATATGAACCGAGATTTGGAACTTCGTCTCCAAGGTAGTCTCGGGGCCTCAAACATCCATTTCGAAAACCTTTTGAGACCTTCTTCTCCAACAGAAAAAGATGTTCGCGATGGAGAGCCTCCGATTCTAATGTTTCTGGAAAAACTAACGAAGCCCATTAATGAAATATGTGTTCAACTCTCAACTAAGGCAAAAAAATTAGTCATAATTCATGACCTTATAATGAGTGAACAAGTAATGGATCTAAATACATTGTTGAATGTCAAGTCTTATATGTTCCACACCGGATCGACTTTTA-CAGATATTCTTCCCTCAAACAAACTATTCCTGACATAATTGATGATGACGATGATCATGTCAAATTGATCAAGCAAATGCAGGATGAGTTTCCGTTGTTGGAGCCACATGAGAAATATTGTTTTCAAATGGAGCTTGATTATCCGGATATCCATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCCAAAGCAAAAAGCAAGCCGTTATGGGCTTTTGGTCCATTTCATATGTTTGTAGAATCACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745173" ref_strand="+" ref_description="SGN-E745173 [GI|47105955]">
      <seq>ggtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataatataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccgtttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggctagctcagtgatattcgtgtcatttggatcaacgactacattatcacaagagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaacctctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcatttcaatccattcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48300" stop="76437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48599" g_stop="50196" g_length="1598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1598" r_length="1598" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E745173" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48599" e_stop="50196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTT</genome_strand>
        <mrna_strand>GGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAATATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCGTTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCTAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAAGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAACCTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329693" ref_strand="+" ref_description="SGN-E329693 [cTOD-3-D24]">
      <seq>gttttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48312" stop="49541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48611" g_stop="49241" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E329693" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48611" e_stop="49241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAAT</genome_strand>
        <mrna_strand>GTTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329823" ref_strand="+" ref_description="SGN-E329823 [cTOD-3-F7]">
      <seq>tttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcangatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48313" stop="49461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48613" g_stop="49161" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E329823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48613" e_stop="49161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAG</genome_strand>
        <mrna_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCANGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329385" ref_strand="+" ref_description="SGN-E329385 [cTOD-2-O18]">
      <seq>tttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48313" stop="49434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48613" g_stop="49134" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E329385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48613" e_stop="49134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTC</genome_strand>
        <mrna_strand>TTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265374" ref_strand="+" ref_description="SGN-E265374 [cLEI-9-G1]">
      <seq>gtcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatggacctataaggagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48319" stop="49461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48618" g_stop="49161" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E265374" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48618" e_stop="49161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAG</genome_strand>
        <mrna_strand>GTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGGACCTATAAGGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAAGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266374" ref_strand="+" ref_description="SGN-E266374 [cLEI-3-A16]">
      <seq>caaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48320" stop="49442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48620" g_stop="49142" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E266374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48620" e_stop="49142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTAT</genome_strand>
        <mrna_strand>CAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727957" ref_strand="+" ref_description="SGN-E727957 [LA16BA08]">
      <seq>gttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttgggatcacgactacnttatcacaggagcaaatcaatgagattgctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48324" stop="49780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48624" g_stop="49480" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E727957" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48624" e_stop="49480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGG</genome_strand>
        <mrna_strand>GTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGGATCACGACTACNTTATCACAGGAGCAAATCAATGAGATTGCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711034" ref_strand="+" ref_description="SGN-E711034 [FA57DA05]">
      <seq>tatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttccccccccccccccccccaaaaaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48345" stop="49543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48645" g_stop="49243" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E711034" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48645" e_stop="49243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCA</genome_strand>
        <mrna_strand>TATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTCCCCCCCCCCCCCCCCCCAAAAAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272674" ref_strand="+" ref_description="SGN-E272674 [cLEM-21-I3]">
      <seq>accaatgaagtcattgtggccatggtaccattttatgattacagccatctcaatggcctgttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48355" stop="49530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48655" g_stop="49230" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E272674" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48655" e_stop="49230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTAC</genome_strand>
        <mrna_strand>ACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATGGCCTGTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701165" ref_strand="+" ref_description="SGN-E701165 [FA15AH01]">
      <seq>gtcgttatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48370" stop="49879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48670" g_stop="49579" g_length="910"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="910" r_length="910" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E701165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48670" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAG</genome_strand>
        <mrna_strand>GTCGTTATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284246" ref_strand="+" ref_description="SGN-E284246 [cLER-16-O8]">
      <seq>acagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48395" stop="49483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48695" g_stop="49183" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E284246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48695" e_stop="49183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATG</genome_strand>
        <mrna_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284410" ref_strand="+" ref_description="SGN-E284410 [cLER-16-O10]">
      <seq>acagccatctcaataacctcttagatctctctcgtttcatcgcgtaccataacataccagtacacttcatctcatttgtgtgatatgaaccgagatttgaaacttcgtctcaaaggtagtaccggggcctcaaacatacatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgtgcaactctctacaaaagcaaaaaagttagtcattgtgcatgaccttataatgagtgaacaaatattggaagtgaatacattggcgaatgtgaaaagttacatgttccatacaggatcgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48395" stop="49369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48695" g_stop="49069" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E284410" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48695" e_stop="49069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGT-TGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTT</genome_strand>
        <mrna_strand>ACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTACCATAACATACCAGTACACTTCATCTCATTTGTGTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTACCGGGGCCTCAAACATACATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTGCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTGCATGACCTTATAATGAGTGAACAAATATTGGAAGTGAATACATTGGCGAATGTGAAAAGTTACATGTTCCATACAGGATCGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266911" ref_strand="+" ref_description="SGN-E266911 [cLEI-7-A12]">
      <seq>tctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48424" stop="49552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48724" g_stop="49252" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E266911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48724" e_stop="49252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGT</genome_strand>
        <mrna_strand>TCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267212" ref_strand="+" ref_description="SGN-E267212 [cLEI-4-M6]">
      <seq>catctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48462" stop="49563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48762" g_stop="49263" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E267212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48762" e_stop="49263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATG</genome_strand>
        <mrna_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266751" ref_strand="+" ref_description="SGN-E266751 [cLEI-7-M17]">
      <seq>catctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48462" stop="49451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48762" g_stop="49151" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E266751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48762" e_stop="49151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAAT</genome_strand>
        <mrna_strand>CATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268324" ref_strand="+" ref_description="SGN-E268324 [cLEI-13-C21]">
      <seq>ttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagggaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48473" stop="49658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48773" g_stop="49358" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E268324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48773" e_stop="49358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACAT</genome_strand>
        <mrna_strand>TTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGGAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238271" ref_strand="+" ref_description="SGN-E238271 [cLED-22-J4]">
      <seq>gatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48583" stop="49700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48883" g_stop="49400" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E238271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48883" e_stop="49400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCA</genome_strand>
        <mrna_strand>GATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267739" ref_strand="+" ref_description="SGN-E267739 [cLEI-12-H1]">
      <seq>aaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcacatcaatgagatagctctgggtttagaacagagtaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48666" stop="49799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48966" g_stop="49499" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E267739" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48966" e_stop="49499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCA</genome_strand>
        <mrna_strand>AAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCACATCAATGAGATAGCTCTGGGTTTAGAACAGAGTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266253" ref_strand="+" ref_description="SGN-E266253 [cLEI-3-D3]">
      <seq>gaacaaattttggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48703" stop="49801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49003" g_stop="49501" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E266253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49003" e_stop="49501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACA</genome_strand>
        <mrna_strand>GAACAAATTTTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371338" ref_strand="+" ref_description="SGN-E371338 [TUS-27-C17]">
      <seq>tcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48730" stop="50188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49030" g_stop="49267" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49385" g_stop="49888" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="742" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E371338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49030" e_stop="49267"/>
          <exon e_start="49385" e_stop="49888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGG</genome_strand>
        <mrna_strand>TCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265366" ref_strand="+" ref_description="SGN-E265366 [cLEI-9-A21]">
      <seq>gaatgtcaaaagttacatggggcatacaggatcgacttttagcaccccttcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggataaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgctaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48754" stop="49657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49032" g_stop="49357" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E265366" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49032" e_stop="49357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACA</genome_strand>
        <mrna_strand>GAATGTCAAAAGTTACATGGGGCATACAGGATCGACTTTTAGCACCCCTTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGATAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCTAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269076" ref_strand="+" ref_description="SGN-E269076 [cLEI-16-H12]">
      <seq>tccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48784" stop="50005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49084" g_stop="49267" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49385" g_stop="49705" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="505" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E269076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49084" e_stop="49267"/>
          <exon e_start="49385" e_stop="49705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCA</genome_strand>
        <mrna_strand>TCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220780" ref_strand="+" ref_description="SGN-E220780 [cLEL-22-I8](-)">
      <seq>caaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtccatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtnctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48789" stop="76441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49089" g_stop="49267" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49385" g_stop="49541" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="337" r_length="158" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E220780" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49089" e_stop="49267"/>
          <exon e_start="49385" e_stop="49541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGT-CATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAA</genome_strand>
        <mrna_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTNCTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221166" ref_strand="+" ref_description="SGN-E221166 [cLEL-22-I8](-)">
      <seq>caaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaaaaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtcctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48789" stop="76441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49089" g_stop="49267" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49385" g_stop="49541" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="336" r_length="157" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E221166" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49089" e_stop="49267"/>
          <exon e_start="49385" e_stop="49541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAA</genome_strand>
        <mrna_strand>CAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAAAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTCCTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272388" ref_strand="+" ref_description="SGN-E272388 [cLEM-19-E4]">
      <seq>ggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgggatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48963" stop="50003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49263" g_stop="49703" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E272388" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49263" e_stop="49703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAG</genome_strand>
        <mrna_strand>GGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGGGATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290198" ref_strand="+" ref_description="SGN-E290198 [cLET-5-C2]">
      <seq>tgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="49037" stop="49968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49337" g_stop="49668" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E290198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49337" e_stop="49668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTT</genome_strand>
        <mrna_strand>TGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265360" ref_strand="+" ref_description="SGN-E265360 [cLEI-9-P10]">
      <seq>gatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattactaacgaatatgttgaagattggaatcgctgtcaagagttgggctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="49116" stop="50290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49416" g_stop="49990" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E265360" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49416" e_stop="49990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATA</genome_strand>
        <mrna_strand>GATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTACTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGGCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371337" ref_strand="+" ref_description="SGN-E371337 [TUS-27-C17](-)">
      <seq>gggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcatttcaatccattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="49179" stop="76441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49479" g_stop="50200" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E371337" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49479" e_stop="50200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTTTTTT</genome_strand>
        <mrna_strand>GGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733928" ref_strand="+" ref_description="SGN-E733928 [LB11BC10]">
      <seq>gtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="49181" stop="50465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49481" g_stop="50178" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E733928" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49481" e_stop="50178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTC</genome_strand>
        <mrna_strand>GTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716136" ref_strand="+" ref_description="SGN-E716136 [FB16AH04]">
      <seq>atttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcatttcaatccattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnncccccccccccggccatttttggggggggggggccccctattagttgaacactgggggggaaaaacttccctcggggggggtcccccctttttttttcaatttttttgagaaaaaagggtccgtgtgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="49365" stop="76456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49665" g_stop="50184" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50185" i_stop="50734" i_length="550">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50735" g_stop="50739" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="525" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50740" i_stop="52441" i_length="1702">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52442" g_stop="52478" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="562" r_length="37" r_score="0.676"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52479" i_stop="53372" i_length="894">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.329" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53373" g_stop="53380" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="570" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53381" i_stop="53552" i_length="172">
            <donor d_prob="0.917" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53553" g_stop="53566" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="584" r_length="14" r_score="0.571"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53567" i_stop="55221" i_length="1655">
            <donor d_prob="0.400" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55222" g_stop="55249" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="610" r_length="26" r_score="0.500"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55250" i_stop="55312" i_length="63">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55313" g_stop="55414" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="711" r_length="101" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E716136" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49665" e_stop="50184"/>
          <exon e_start="50735" e_stop="50739"/>
          <exon e_start="52442" e_stop="52478"/>
          <exon e_start="53373" e_stop="53380"/>
          <exon e_start="53553" e_stop="53566"/>
          <exon e_start="55222" e_stop="55249"/>
          <exon e_start="55313" e_stop="55414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTTTTTTTGATGCTTGTCTTTTAAAAAACCAACATTATTATTAGGTAGATTGGACATATCCCTTGTACTAAATGATCTCCTCTTGCTTTGATTGCTGATAGAGACTGATGGAGATAGTCTATCGGAAACGGACTCTTACTAGGACTGAGTACGCTTTACCCTCCGCAGACCTCACTTGTGGGATTACAGTGGATATGTTGTTGTTGTTATGTTGCTTAGACTCTTCAAAGATATTGGCAGGTGTGTGTGTTGGATCCTCCAAAAGTAGTATACTTTTGGAGGATCCGACACAGGTGTTGCAGCATTGTTGAAGAGTCCGAGCAATATGACCTATCGGTCCTTACGGAAAAAAAATGAAACATATTGTTCATTGTTCAAAACAAGTAGATTTGTGAGGCATACCAGGAAGCACCAGCTGAAACTTGAGTCACTGATGTATCCTTATTGGGCTGATTCTGAACTATCTGTACAATAGCCTGCATTTGGTACAAACATTATGAATATAAAGTTTTGTTGTTGAAATCTTTTTTTTTTTCAAAAGAAGAAGTTGATGGCCGAGTAACACGTAAGGCAGGACAGACAACTTAATGCGGGAGAGGCATAAGTGGCAGTTCAATCTTTGTGGTATCATGTCCCTTAACTTGACGTCAGCTGACAAATATGATGGTCTTGAAGTCTCTCCAACATTCGTTTCGATGACCTTCAGCTGCCTTCTAAATTAGATGATACTGGAGACGTCGTTGATAATGATCTGCCTTTGATTGCAGTTCTGTCTTTGATTGCAATTCTGTTGGGGAAAAAAAACATGGTCTTGAAGTCTCTCCAACACTCATTTCGACAACCTTCAGCAGCCTTCGAAATTAGATGACCGTTAACTTGGTAATATTTGTATCGTTTAGGATTGTTAAGATATGGCATCCGGGCCTAACTCAACATGTGGGAGGTTTGTCCAAGTCCATATAAGGAGACTAAATTCTCATTACTCTACCGCTGTGGGACATCTTAACAGGGACAAACACTAAGTTCTCACAAGAACAAGCCAATGAGTTCATGCTCGGACATATACCTACAGGCGGGTTCTTCTCTTGAGTCACTGTGCACGGAATTCTTGTTTAGAGAACACTAGTATAGCAGCTTGGCCTAACAATGCAGACCAGCCATATAATGCTGTTTTTGTAATCACGAAAATCGGTATGTGTGGAGTTAGGTTCTGAGAGAAGGATCGGTGACAGCATCTGCTGTTAAAAAGCTGTCAACACAGGTTCGACAGAAAGGGAAGAAATGAGGCAGAGAGCAGTGGAATCTTTCATCTCCTACATTACCAAATAACTTTCTATGTTGTCCCACACTCCAAAAATGTTGTTGCACTTGTGTCGAATCCTGAAATATTACATTAATTTTGAAGGATCAAACGCACACAAAAAGATGACATTTTTGGAGAGCCTGAACAACATGATGAGGTTAAATATGACACAAGATCGCCATTAATAATAATACACTAGCCACCTTTGTTTCTTATGTTTGAATGCATATTACAAGGCATAATACATAAATATACCCTTTAACTTGACATCATTTCACATTTATGTCCTTCAATTTTACTAGTTTCCGAGCACGCGCTTTGCGCGTGTAACCCATGAGTGTATTATTTCTTAAAAGATAATACTATTAAATAATAAAATATGCCTAATTGAGATTTCTTACTTTGTTTTACTACTAATTGTGACATTCCAATTTTCTGACCTGCAAGTTAATGCATCGAGGTAATAATATGAGAAATTAATAAAATAAACTTTGTTTGTAATTCAAAAAATGAGTTTGCAAAGCTAAAAGGAAAAATAACAACTATCTAAATTAAATTTCTTGATAGTTCCGTTTTATTGGTAGAATAATTCTAGATAGTGTAAGATTAACTTTGAGTGAAGGAAAACAAAACCTTTCAACTTTTTTTAATGATTGTGTTTAAGTATTGTATTAATTTTTTATTCACAAACACTTTAAACTAATTAGTTAACTATAAATATTTAAAACTAAGATGTAAAAAGTTTTATCATTTATATTTTAAAAATCACGATATTTATGAATATCTACTATTTTTGTATAAAATTTAATTCTGTCATACATAACTTATCCACCATTAATCTAATATTATATGTTTCATCTTTTTTTTTTTCATAAAAAGAAAAGAAAAGAGTAAACATCCTATTTTATCACATTCATTCTTAAAGATGAAAATTAATGTATATGTAAAAAAATTATACGTACGGAGAAAAGAAAAAAAAAAGGTACACATGAGCAAGATAATTAGGCATTTCATTTTGTTTGTGTCTATAGTGAAACTGAACATTTGAGCATACAAAATACAAATATGAATTTAGAGCAACTTGCTAATAAAACAAGAATTCAACTACATGAAGAGAGACAAAAAAGTCTTATTATAATTCTTACTACAAATAAGTATAAAACTAACATATCAAGCTCCGATGCTTCAGTAATTGAATTTTTATCTACTCTCGTAATTGCATAAGGGAATCTCACAACTTTCACCTCAAATTGTGACATTATTTCACATGTTTAGAGTTCCTACATACAAGAATTGTAGGAGTGGTAAATAAAAGTTCTTCTTGAAAAAGTTAAATTTATAGAACAAAATTATAGAAACATGAAAAGTCACCTGAATTATTGTTAAAATAAATATAAAAAAGATAGAGATGAAATTTAATTTTAAAGATACATGAATCTACGTTAATTTCTTGATAATTACTCATTTTTGTTTTTATTTACATTTATGTTAGAAATTTGAAAGGTCAAGATTATGAAATGAGAATAAGAAGATTATATATATATAAATTATATAAGTTTTAATTTATTAGAGGGGCAAAATGATAATTCAACTTTTAAGTTTTGAGCTTCAGCTTCATGCTTATAATAATATATGATATGTGCTCAAATAAACACATACGTTTTACGTGGCATCCTACATGGCAATTTGCATCTTACGTAGTGTCCTATGTGCTTCATGTCTCGTAGGACTAATGTGTCTACTTATTCAACTTTATTCAGGTTTGAGCGCTTACTTGTGCACCCCCAAAGTAGGAGGGCCTAAATGTGAAATGAGGCCAAATTGATACGTGTCAACAACTAACATGAAAGAAATTTTGTATGCATGAAATTTAAAGGAAACATGGCACTTGAAAAATAGTTATTCATGACATACTTGATACAAAATGTTGATGTTCATTGAGTGAAATTTATTTGGTAATACAAGAAATGAAAGATTCCCTTTCCTTATGTGCAAGTCCTCCATGACTAATAGAGTTCTTGATCTTATTGCTCAACCCGATTGCCCTCTGTCGAATTTCTTCCCCTTCCGGTGAACCCATCAAAGTCCTAACAGCTTTCTCAATAGTTGTTGCTGTTACCAATTCTTCCCTACGAGACCAACTCCTAACCGGGATCCCAATCTTCAGCACGTTGGTTACAAAAACAGCGTTATACGGTTGGTCCACTTGAATTGGCCAAGTTGCTATAGGAACTCCCATGCTAACGCTCTCCATACAAGAATTCCATCCACAGTGACTCAAGAACCCTCCCGTAGATTTATGTCCCAAGATTTCCAGTTGAGGCACCCAATTCCTCACCACCATTCCTCTTCCTCCCACTCTTTCTTCGAACCCTTCTGGCAATTCAAAGTTCGAACCTTTACCTCCACATTTCTCCGTCTCCATCTTTTTATCCGCTTCTCTTATCACCCAAATGAACTTATGGTTACTCCTCTCCAAACCAAGCGCAAGCTCATTCACTTGCTCTCGTGACAATGTAGTAGTCGTTCCAAACGAAACAAACATTACTGAATCAAAATCTTGCTCATCGAGAAACTCAAGACACTCGTGGCGATCCCTATTGCTCATTGACTCGGGTAATTCTTGCAACAAATGAAATGGACCAAGAGCAAACAATGGCTTCTTCCTAACATTAACAAGTAAATCCAAGTACTCCCCTTCTAATTCCCTACAAGAATTCATTAACTCTCCACAATTACGATTACATTCCCTTTCCTTTTTCACAAACTCAAAAATATCGGGTCCAAAACAATCCCCGACTTCAGGCATTTCATCGAACAGTTGGCGTGCGACTCCGTCTTCAACTTCATCAGCAACCTGTTGAAATGTAGAATACATACAAAAAGCTGAAATCGCATGAAAAGAGTAACACTCAACATTTGATATCGAATACACTTCCTTAATCACATCAGTCATCAAAGAATCAAAAACAACCACCAATTTCTTCGCCTTCTTCGAGATTTCAACACAAATTTCACAAATGGGTTCCCCCAATTTATCCAAAAACTCCAAAAATGCAAACTCATCAGCAAAATCCTCTCTGGGTTCTGAAATTGGGATCAGAGGGGGTGCTAAAAGGTCATTAAAATGAATTTTTGAGGTATTTTGAACGCGGGTTTTTAGATCTTGATTTCGATCAGTGAGAGAGATGAAGTGTAAGGGGATATTGTGAGAAGAGATGAAGTTAGCTATATGGAAGAGTTGATTGAGATGACCATGTTCTGGCCATGGAATTACAGCTACAATTACTTCATTGAGCTCAAGAATGTTGGTTGATGAATTGGTAGCCATTGCAACAACAAAAATGGTTTGAATTTGAACAGTGAAATGTGATGAAAAGATATGATGCTTTGAATCACACCTGCCATTATAGAGTAATATTTCAGCGTTGCTAAAATTTTAATAGCTCGGTTGATTGATTAGTCGATTGATGAACTTTTTATTTTTGTAGACTCTAGTTGAGATTTTCGATTCAATTTCTTTGAACTTGTAAATTCTTTTTCAACTTTCCTTTCTCGAGTTTTAAATTGAGATCTCCATTTGAGTCTGACACCTTATTTAGTATTGTATTGTTAATTTAAGTACAATGTTTGTTTTGATTATTATTAAGGAATTTTCACATAGAGTGACTCAAATATAGCTTAATTACTTTTCATAACTATAATTTGATAATTATAATTCGTAGCTACTTATAGGAAGGAGAGAGGGAGGCCAGACTAGAGGAGAGAGGAGAGAGGCGAGCGAGAGAGGGCAAGGAGTGGGAGAGAGGTGAATTTTATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAANN............................................................................................................................................................................NNCCCCCCCCCCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATTTTTGG--GGGGGGGGGGCCCCC...............................................................TAT-TAGTTGAACACTGGGGGGGAAAAACTTCCCTCGGGGGGGGTCCCCCCTTTTTTTTTCAATTTTTTTGAGAAAAAAGGGTCCGTGTGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412277" ref_strand="-" ref_description="SGN-E412277 [STM-16-C17]">
      <seq>gaaagagtggaaggaagaggaatggtggtgaggaattgggtgcctcaattggaaatcttgggacataaatctacgggagggttcttgagtcactgtggatggaattcttgtatggagagcgttagcatgggagttccgatagcaacttggccaattcaagtggaccaaccgtataacgctgtttttgtaaccaacgtgctgaagattggaatcccggttaggagttgggctcgtagggatgaattggtaacagcaacaactattgagaaagctgtcaggactttgatgggtacaccggaaggagaagaaattcgacagagggcaatcgagttgagcaataagatcaagaactctgttagtcatggaggacttgcacagaaggaaagggaatctttcatttcttgtattaccaaataaatttcactcaatgaacatcaacattttgtgtcaagtatgtcatgaataactttttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="54161" stop="53085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53861" g_stop="53385" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="490"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E412277" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412277" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53861" e_stop="53385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTGGGAGGAAGAGGAATGGTGGTGAGGAATTGGGTGCCTCAACTGGAAATCTTGGGACATAAATCTACGGGAGGGTTCTTGAGTCACTGTGGATGGAATTCTTGTATGGAGAGCGTTAGCATGGGAGTTCCTATAGCAACTTGGCCAATTCAAGTGGACCAACCGTATAACGCTGTTTTTGTAACCAACGTGCTGAAGATTGGGATCCCGGTTAGGAGTTGGTCTCGTAGGGAAGAATTGGTAACAGCAACAACTATTGAGAAAGCTGTTAGGACTTTGATGGGTTCACCGGAAGGGGAAGAAATTCGACAGAGGGCAATCGGGTTGAGCAATAAGATCAAGAACTCTATTAGTCATGGAGGACTTGCACATAAGGAAAGGGAATCTTTCATTTCTTGTATTACCAAATAAATTTCACTCAATGAACATCAACATTTTGTATCAAGTATGTCATGAATAACTATTTTTCAA</genome_strand>
        <mrna_strand>GAAAGAGTGGAAGGAAGAGGAATGGTGGTGAGGAATTGGGTGCCTCAATTGGAAATCTTGGGACATAAATCTACGGGAGGGTTCTTGAGTCACTGTGGATGGAATTCTTGTATGGAGAGCGTTAGCATGGGAGTTCCGATAGCAACTTGGCCAATTCAAGTGGACCAACCGTATAACGCTGTTTTTGTAACCAACGTGCTGAAGATTGGAATCCCGGTTAGGAGTTGGGCTCGTAGGGATGAATTGGTAACAGCAACAACTATTGAGAAAGCTGTCAGGACTTTGATGGGTACACCGGAAGGAGAAGAAATTCGACAGAGGGCAATCGAGTTGAGCAATAAGATCAAGAACTCTGTTAGTCATGGAGGACTTGCACAGAAGGAAAGGGAATCTTTCATTTCTTGTATTACCAAATAAATTTCACTCAATGAACATCAACATTTTGTGTCAAGTATGTCATGAATAACTTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412276" ref_strand="+" ref_description="SGN-E412276 [STM-16-C17]">
      <seq>catcaaccaacattgttgagctcaatgaagtaattgtagctgtaattccatggccagaacatggtcatctcaatcaactcttccatattgctaacttcatctcttctcacaatatccctcatcacttcatctctctcactgatcgaaatcaagatctaaaaaatcgcgtccaaaatacctcaaaaatccattttaatgaccttttagcaccccctctgacccaaatttcagaacccagagaggattttgctgatgagtttgcatttttggagtttttggataaattgggggaacccatttgtgaaatttgtgttgaaatctcgaagcaggcgaagaaattagtggttgtttttgattctttgatgacggatgtgattaagggagtgtatgcgatatcaaatgttgagtgttactcttttcatgcgatttcagctntttgtatgtattctacatttcaacaggttgttggtgaagttgaagacggagttgcacgccaagtgttcgatgaaatgcctgaagtggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="55114" stop="53989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54814" g_stop="54289" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E412276" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54814" e_stop="54289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGCTGATGAAGTTGAAGACGGAGTCGCACGCCAACTGTTCGATGAAATGCCTGAAGTCGGGGA</genome_strand>
        <mrna_strand>CATCAACCAACATTGTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATTGCTAACTTCATCTCTTCTCACAATATCCCTCATCACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAAATCGCGTCCAAAATACCTCAAAAATCCATTTTAATGACCTTTTAGCACCCCCTCTGACCCAAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGCAGGCGAAGAAATTAGTGGTTGTTTTTGATTCTTTGATGACGGATGTGATTAAGGGAGTGTATGCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTNTTTGTATGTATTCTACATTTCAACAGGTTGTTGGTGAAGTTGAAGACGGAGTTGCACGCCAAGTGTTCGATGAAATGCCTGAAGTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470340" ref_strand="+" ref_description="SGN-E470340 [cSTB-17-J10]">
      <seq>catcaaccaacattgttgagctcaatgaagtaattgtagctgtaattccatggccagaacatggtcatctcaatcaactcttccatattgctaacttcatctcttctcacaatatccctcatcacttcatctctctcactgatcgaaatcaagatctaaaaaatcgcgtccaaaatacctcaaaaatccattttaatgaccttttagcaccccctctgacccaaatttcagaacccagagaggattttgctgatgagtttgcatttttggagtttttggataaattgggggaacccatttgtgaaatttgtgttgaaatctcgaagcaggcgaagaaattagtggttgtttttgattctttgatgacggatgtgattaagggagtgtatgcgatatcaaatgttgagtgttactcttttcatgcgatttcagctttttgtatgtattctacatttcaacaggttgttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="55114" stop="54043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54814" g_stop="54343" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E470340" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54814" e_stop="54343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGCTGATGA</genome_strand>
        <mrna_strand>CATCAACCAACATTGTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATTGCTAACTTCATCTCTTCTCACAATATCCCTCATCACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAAATCGCGTCCAAAATACCTCAAAAATCCATTTTAATGACCTTTTAGCACCCCCTCTGACCCAAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGCAGGCGAAGAAATTAGTGGTTGTTTTTGATTCTTTGATGACGGATGTGATTAAGGGAGTGTATGCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471602" ref_strand="+" ref_description="SGN-E471602 [cSTB-24-H15]">
      <seq>attcaaacaatttttgttgcaatggctaccaattcatcaaccaacattgttgagctcaatgaagtaattgtagctgtaattccatggccagaacatggtcatctcaatcaactcttccatattgctaacttcatctcttctcacaatatccctcttcacttcatctctctcactgatcgaaatcaagatctaaaaaatcgcgtccaaagtacctcaaaaatccattttaatgaccttttagcaccccctctgacccaaatttcagaacccagagaggattttgctgatgagtttgcatttttggagtttttggataaattgggggaacccatttgtgaaatttgtgttgaaatctcgaagcaggcgaagaaattagtggttgtttttgattctttgatgacggatgtgattaagggagtgtatgcgatatcaaatgttgagtgttactcttttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="55139" stop="54092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54851" g_stop="54392" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E471602" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54851" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCATTTTTGTTGTTGCAATGGCTACCAATTCATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATG</genome_strand>
        <mrna_strand>ATTCAAA-CAAT-TT-TTGTTGCAATGGCTACCAATTCATCAACCAACATTGTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATTGCTAACTTCATCTCTTCTCACAATATCCCTCTTCACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAAATCGCGTCCAAAGTACCTCAAAAATCCATTTTAATGACCTTTTAGCACCCCCTCTGACCCAAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGCAGGCGAAGAAATTAGTGGTTGTTTTTGATTCTTTGATGACGGATGTGATTAAGGGAGTGTATGCGATATCAAATGTTGAGTGTTACTCTTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745994" ref_strand="+" ref_description="SGN-E745994 [GI|47105408]">
      <seq>ggtagagaagagaggaaaaacaatatctctctttctctctctctctaaaaattcttactttctctctcttaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggttgagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgacagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaagttgaagctgaactgtttggggaagattcctctcggggtcgtgtggatagcaatgtgcaggtgcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaagagctcaagtttctgccaatcaagggggaggtcctgctcctacactgatcaaagctgaggtgccatggtcagttcgaaggggcactctttctgacaaagatcgtgtcttgaaaacagtcaaggggtaatctttctggaaattctagttaatgcttttaacaagttctgtattataattccaagctattttttcaccacatcttgaaagtagggaactgcatttcttctgtactaccttttctctattcatggatataataagccgtcattgcaaataaataaaaaggtttcaatatggtcttggtttcagatgtagtttgcacattcttttaaggtgaattttaggatatccttatttgtacatgattgatgcaagtattatcgatcttgcagaatacttaacaagttgaccccagagaaatttgatcttctcaaaggccaattaatagattcagggataacaagtgcagacattctggagggtgtgatctccttgatatttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttcctccatttccatctgatgaacctggtgggaaagaaatcacgtttaagcgagttcttctgaataattgccaagaggcatttgaaggttctgacaaactgagggaagagatgagacgaatgactgctccggagcaggagtcggaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagctattgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggttattgattgttttctattagcttaataatcttcttggtcctttccctcataaatgtaaccaatatatcaattttgtggaaaattgtcttcctgatcttgcttacaggaactattaggacaagatcccaaaagctgtccagaagaagagaacgttgaagctatatgtcagttctttaacaccattggtaagcagcttgacaagaagcaaaagtcgaggcacatcaatgatatatatttcaaccgattgaaagaactatcgacaaaccctcagctggtagcacgcctaaggtttttggttcgtgatgtgctggatttacgtgccaataactgggtccctaggcgggaagaggtgaaagccaaaaccattaacgagatccactcggaagcagagaagaccttggggttgcgtcctggtgctacattaagcattagaaatgctcgtgctcctccaggtattcaagggaatttgggtcctggtggctatcccattaatcgacccggcactggtggtatgatgccagggatgccaggagcaaggaagatgcctgggatgccaggaatggataatgacaactgggaagttcctaggtcacgaatgccaagaggtgctcagcaaccattgattgggaagtcgccggccttgaacacaagattgttgcctcagggtagcaatgtcggcatgagtggcaggagtagtgctctcttacaaggtagtggtggacctcctgtccgaccatcaggctatgtctctggtatggagcctgtatcacaagttccagtaccagttaagccatctccaactagtaccgttttgcctgttgctgggaaacctcaggctccagctgcaaggtcaaatcctgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttacagtgcattgaggaactcaaatcccctgccttctatcctgaggttgtcgagaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtctgctaaaaaggtttttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttaccaaaagcaccagcaaatttcggggagataatttcgaggctagttttgacaggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcgaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63805" stop="76441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64104" g_stop="64482" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="745" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68950" g_stop="69404" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="1200" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69495" g_stop="70196" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1201" r_stop="1902" r_length="702" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70277" g_stop="71632" g_length="1356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1903" r_stop="3258" r_length="1356" r_score="0.996"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71633" i_stop="72480" i_length="848">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72481" g_stop="72498" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="3259" r_stop="3276" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E745994" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>3276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64104" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="69404"/>
          <exon e_start="69495" e_stop="70196"/>
          <exon e_start="70277" e_stop="71632"/>
          <exon e_start="72481" e_stop="72498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATACGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAGGTCTTATCTTTCGGATACTTATATTTCTGTAATTTCTTGTTTCCATCGTATGTCTTGGTTAACTGATGTATTCTCTTCTCTAAATTCTAGGGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAGGTGATACACGATTTGCTTATGCAGTAGTTCTGACTAGTTAAGTCCACTTCTTTCTCATGATGTATTAACTTCTTTTATAGGTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCTTTTGCTGGGTATTTGCATCTGCAGATTTTATTCTCTATTAGCTTTGCTTTTAGCTACTTGTTAGTAATAATGATGTACACTCAAAGTCTTTGTTGCGCCCGTTATCGTGTAGTTTCTTATTCTTCGGTGTGTACTACTATCTGTTGATGCATTCCTTTTGTATCTTGGTATTTTGTCGTCTCTTTTCTACAATTGTGTATGATAGAGGGTTTTATCAGAAACAACCTCTCTACCTCACAAAAGATAGGGGTAAGATTTGCTTATATCTTAAACTCTTCAAATCACAAGCTCAAAATCCTTTGATGTTTGGCGGAGTTAAGTATATAAGAATCTTATTCAATTCATAAACACTCAATTGAGAGCAGCCTCTTGTGTAACATATTCTTAGACGTGAAAGCACTTTTTAAGTTTCATATTTCATTCGTGGTTTAGTTGATTATCTTTTAAATAACTTAATTTTTATAAATATTTTTCACATTGATTAATCGATTTATATATTTTGAACTCTTTATTATGTTTGTACTTTCCCGCATAAATCAGTTTTTCTTATTAAAAGAAATTTCATATAATATCTGAAGTTTGCATAAAAGTTCTGATTAAATTTAAATCACACTGCAAAGTTCATTCGGGGGAAACGCTCCAGCTATTTTTATCCTCATTTTGAGCTATTATTATCCTCTTGGGCTTAATCATTCGGTATTTGAAAAGTTTGAAAAAAAATACGTTCATCAGAGATGTCGTTCATCCTCGAAGTTTGAATTCAAAATCTTTTATCTAAAAATAAAGAAAAATTA</genome_strand>
        <mrna_strand>GGTAGAGAAGAGAGGAAAAACAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTTAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTGAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATATGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG..........................................................................................GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAACGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCGATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG................................................................................GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCAAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGATTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTAAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACAGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCGAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365089" ref_strand="+" ref_description="SGN-E365089 [cLPP-17-K13]">
      <seq>agtagagaagagaggaaaagcaatatctctctttctctctctctctaaaaattcttactttctcactctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggtttagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaaattgaagctgaactgtttggcgaagattcctctcggggtcgtgtggatagcaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63804" stop="68303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64104" g_stop="64482" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E365089" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64104" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT</genome_strand>
        <mrna_strand>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCACTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAATTGAAGCTGAACTGTTTGGCGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731681" ref_strand="+" ref_description="SGN-E731681 [LA27DE05]">
      <seq>ccctatagaggaaaagcaatatctctctttctctctctctccccatattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggtttagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcacacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgacagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggctgtcttacagttacctgaggttattctgcaaatcaaacacgaagttgaagctgaactgtttggggaagattcctctccgggtcgtgtggatagcaatgtgcacgtgcagtctcagggtcgttattctgaaccacacaatcgtgactggcgtaataggccaccacaattttctgcccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63812" stop="68679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64108" g_stop="64482" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="447" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="549" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68379" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="632" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E731681" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64108" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCAT</genome_strand>
        <mrna_strand>CCCTATAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCCCCATATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCACACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGCTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCCGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCACGTGCAGTCTCAGGGTCGTTATTCTGAACCACACAATCGTGACTGGCGTAATAGGCCACCACAATTTTCTGCCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731601" ref_strand="+" ref_description="SGN-E731601 [LA27CE05]">
      <seq>gaagagaggaaaagcaatatctctctttctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggtttagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgacagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaagttgaagctgaactgtttggggaagattcctctcggggtcgtgtggatagcaatgtgcaggtgcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaagagctcaagtttctgccaatcaagggggaggtcctgctcctacactgatcaaagctgaggtgccatggtcagttcgaaggggcactctttctgacaaagatcgtgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63810" stop="69333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64110" g_stop="64482" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="445" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="547" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="739" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68950" g_stop="69033" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="823" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E731601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64110" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="69033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTG</genome_strand>
        <mrna_strand>GAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546885" ref_strand="+" ref_description="SGN-E546885 [TUS-70-H17]">
      <seq>gcaatatctctctttctctctctctctaaaaattcttactttctcactctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggtttagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaaattgaagctgaactgtttggcgaagattcctctcggggtcgtgtggatagcaatgtgcaggtgcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaacttggtggccagtatactcggcaagagcaatcacagtttgcaagagctctagtttctgccaatctagggggaggtcctgctcctaccctgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63823" stop="69274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64124" g_stop="64482" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="360" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="432" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="534" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="726" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68950" g_stop="68974" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="751" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E546885" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64124" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="68974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCA</genome_strand>
        <mrna_strand>CAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCACTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAATTGAAGCTGAACTGTTTGGCGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAACTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCTAGTTTCTGCCAATCTAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCCTGCTCCTACCCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363696" ref_strand="+" ref_description="SGN-E363696 [cLPP-3-N18]">
      <seq>caatatctctctttctctctctctctaaaaattcttactttctcactctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggtttagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63824" stop="68242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64124" g_stop="64482" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="431" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="67942" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="475" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E363696" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64124" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="67942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACA</genome_strand>
        <mrna_strand>CAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCACTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455572" ref_strand="+" ref_description="SGN-E455572 [cSTS-26-N19]">
      <seq>aagcaatctctctttctctctctctgaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcaaacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcagtttttcgtcctcatggcggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatacgcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggtttttctgcaaatcaaacaagaaattgaagctgaactgtttggtgaagatgcctctcggggtcgtgtggatagcaatctgcaggttcagcctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttcttcccccatagaggagaggtcatgggaagcacttcgagaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63821" stop="68763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64125" g_stop="64482" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="429" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="531" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68463" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="697" r_length="166" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E455572" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64125" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAG</genome_strand>
        <mrna_strand>AAGCAATCTCTCTTTCTCTCTCTCTGAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAAACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGTTTTTCGTCCTCATGGCGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACGCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTTTTCTGCAAATCAAACAAGAAATTGAAGCTGAACTGTTTGGTGAAGATGCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................CTGCAGGTTCAGCCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTTCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAG-AAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437236" ref_strand="+" ref_description="SGN-E437236 [cSTA-3-I19]">
      <seq>gcaatctctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcagtttttcgtcctcatggtggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcaactcctgcaactgagggaggcggttgtcttacagttacctgaggtttttctgcaaatcaaacaagaaattgaagcggaactgtttggtgaagatgcctctcggggtcgtgtggataacaatgtgcaggttcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63835" stop="68680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64131" g_stop="64482" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="525" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="609" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E437236" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64131" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATA</genome_strand>
        <mrna_strand>GCAATCTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGTTTTTCGTCCTCATGGTGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAACTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTTTTCTGCAAATCAAACAAGAAATTGAAGCGGAACTGTTTGGTGAAGATGCCTCTCGGGGTCGTGTGGATAACAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTTCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559449" ref_strand="+" ref_description="SGN-E559449 [18949]">
      <seq>aatctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcagtttttcgtcctcatggtggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcaactcctgcaactgagggaggcggttgtcttacagttacctgaggtttttctgcaaatcaaacaagaaattgaagcggaactgtttggtgaagatgcctctcggggtcgtgtggataacaatgtgcaggttcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63837" stop="68669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64135" g_stop="64482" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="521" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68369" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="594" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E559449" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64135" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTT</genome_strand>
        <mrna_strand>AATCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGTTTTTCGTCCTCATGGTGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAACTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTTTTCTGCAAATCAAACAAGAAATTGAAGCGGAACTGTTTGGTGAAGATGCCTCTCGGGGTCGTGTGGATAACAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTTCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455819" ref_strand="+" ref_description="SGN-E455819 [cSTS-27-M20]">
      <seq>ggaaaagcaatctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcagtttttcgtcctcatggtggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcaactcctgcaactgagggaggcggttgtcttacagttacctgaggtttttctgcaaatcaaacaagaaattgaagcggaactgtttggtgaagatgcctctcggggtcgtgtggataacaatgtgcaggttcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaagagctcaagtttctgccaaccaagggggaagtcctgctcctacactgatcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63837" stop="69279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64137" g_stop="64482" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="355" r_length="345" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="427" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="721" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68950" g_stop="68979" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="751" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E455819" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64137" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="68979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCAAAGCT</genome_strand>
        <mrna_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGTTTTTCGTCCTCATGGTGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAACTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTTTTCTGCAAATCAAACAAGAAATTGAAGCGGAACTGTTTGGTGAAGATGCCTCTCGGGGTCGTGTGGATAACAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTTCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAACCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCCTGCTCCTACACTGATCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560558" ref_strand="+" ref_description="SGN-E560558 [20231]">
      <seq>gcacgaggggaaaagcatctctctctctctaaaaatcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccatgtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcagtttttcgtcctcatggtggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcaactcctgcaactgagggaggcggttgtcttacagttacctgaggtttttctgcaaatcaaacaagaaattgaagcggaactgtttggtgaagacgcttctcggggtcgtgtggataacaatgtgcaggttcagtctcaggctcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63837" stop="68709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64137" g_stop="64482" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="361" r_length="344" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="535" r_length="102" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68409" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="648" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E560558" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64137" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGA</genome_strand>
        <mrna_strand>TCTCTCTCTCTCTAAAAAT-CTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCATGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGTTTTTCGTCCTCATGGTGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAACTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTTTTCTGCAAATCAAACAAGAAATTGAAGCGGAACTGTTTGGTGAAGACGCTTCTCGGGGTCGTGTGGATAACAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTTCAGTCTCAGGCTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444507" ref_strand="+" ref_description="SGN-E444507 [cSTA-43-M3]">
      <seq>gaagagaggaaaagcaatctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcagtttttcgtcctcatggtggttcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcaactcctgcaactgagggaggcggttgtcttacagttacctgaggtttttctgcaaatcaaacaagaaattgaagcggaactgtttggtgaagacgcttctcggggtcgtgtggataacaatgtgcaggttcagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63810" stop="68308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64137" g_stop="64482" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="362" r_length="345" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="434" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="536" r_length="102" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68308" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="548" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E444507" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64137" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAG</genome_strand>
        <mrna_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGTTTTTCGTCCTCATGGTGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAACTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTTTTCTGCAAATCAAACAAGAAATTGAAGCGGAACTGTTTGGTGAAGACGCTTCTCGGGGTCGTGTGGATAACAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457779" ref_strand="+" ref_description="SGN-E457779 [cPRO-3-P7]">
      <seq>gagaggaaaagcaatctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatccgtatctatagctttttattgattcgtttttggtttagatttgccatttttcttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagaatttggctctcgctttgatacctcatctaccaattctgatctctcagattttcgtcctcatggtgggtcttcatctttgccatctttcaagactggagattctcgttttgagagccatgaacgtgttcgctatactcgagatcaactcctgcaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63837" stop="67885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64137" g_stop="64482" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="359" r_length="345" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67585" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="426" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E457779" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64137" e_stop="64482"/>
          <exon e_start="67519" e_stop="67585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGA</genome_strand>
        <mrna_strand>TCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCCGTATCTATAGCTTTTTATTGATTCGTTTTTGGTTTAGATTTGCCATTTTTC-TTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGAATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGATTTTCGTCCTCATGGTGGGTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGAGAGCCATGAACGTGTTCGCTATACTCGAGATCAACTCCTGCAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333692" ref_strand="+" ref_description="SGN-E333692 [cTOD-22-E3]">
      <seq>cgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaagttgaagctgaactgtttggggaagattcctctcggggtcgtgtggatagcaatgtgcaggtgcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaagagctcaagtttctgccaatcaagggggaggtcctgctcctacactgatcaaagctgaggtgccatggtcagttcgaaggggcactctttctgacaaagatcgtgtcttgaaaacagtcaagggaatacttaacaagttgaccccagagaaatttgatcttctcaaaggccaattaatagattcagggataacaagtgcagacattctggagggtgtgatctccttgatatttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttccctcatttccatctgatgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="67264" stop="69912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67564" g_stop="67590" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="129" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="321" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68950" g_stop="69047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69317" g_stop="69404" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="507" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69495" g_stop="69612" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="625" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E333692" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67564" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="69047"/>
          <exon e_start="69317" e_stop="69404"/>
          <exon e_start="69495" e_stop="69612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATACGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAGGTCTTATCTTTCGGATACTTATATTTCTGTAATTTCTTGTTTCCATCGTATGTCTTGGTTAACTGATGTATTCTCTTCTCTAAATTCTAGGGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTG</genome_strand>
        <mrna_strand>CGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG.............................................................................................................................................................................................................................................................................AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG..........................................................................................GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCCTCATTTCCATCTGATGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314888" ref_strand="+" ref_description="SGN-E314888 [cTOA-31-K7]">
      <seq>acattctggagggtgtgatctccttgatatttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttcctccatttccatctgatgaacctggtgggaaagaaatcacgtttaagcgagttcttctgaataattgccaagaggcatttgaaggttctgacaaactgagggaagagatgagacgaatgactgctccggagcaggagtcggaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagctattgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggaactattaggacaagatcccaaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="69187" stop="70283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69394" g_stop="69404" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69495" g_stop="69845" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="362" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69954" g_stop="69983" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="392" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E314888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69394" e_stop="69404"/>
          <exon e_start="69495" e_stop="69845"/>
          <exon e_start="69954" e_stop="69983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTGGAGGTCTTATCTTTCGGATACTTATATTTCTGTAATTTCTTGTTTCCATCGTATGTCTTGGTTAACTGATGTATTCTCTTCTCTAAATTCTAGGGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGT</genome_strand>
        <mrna_strand>ACATTCTGGAG..........................................................................................GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG............................................................................................................GAACTATTAGGACAAGATCCCAAAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726714" ref_strand="+" ref_description="SGN-E726714 [LA12CE02]">
      <seq>gtgtgatctccttgatatttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttcctccatttccatctgatgaacctggtgggaaagaaatcacgtttaagcgagttcttctgaataattgccaagaggcatttgaaggttctgacaaactgagggaagagatgagacgaatgactgctccggagcaggagtcggaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagctattgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggttattgattgttttctattagcttaataatcttcttggtcctttccctcataaatgtaaccaatatatcaattttgtggaaaattgtcttcctgatcttgcttacaggaactattaggacaagatcccaaaagctgtccagaagaagagaatgttgaagctatatgtcagttctttaacaccattggtaagcagcttgacaagaagcaaaagtcgaggcacatcaatgatatatatttcaaccaattgaaagaactatcgacaaaccctcagctggtagcacgcctaaggtttttggttcgtgatgtgctggatttacgtgccaataactgggtccctaggcgggaagaggtgaaagccaaaaccattaacgagatccactcggaagcagagaagaccttggggttgcgtcctggtgctacattaagcattagaaatgctcgtgctcctccangtattcaggggaatttgggtcctggtggctatcccattaatcgacccggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="69196" stop="70731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69496" g_stop="70196" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70277" g_stop="70431" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="856" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E726714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69496" e_stop="70196"/>
          <exon e_start="70277" e_stop="70431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAGGTGATACACGATTTGCTTATGCAGTAGTTCTGACTAGTTAAGTCCACTTCTTTCTCATGATGTATTAACTTCTTTTATAGGTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCAC</genome_strand>
        <mrna_strand>GTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG................................................................................GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCANGTATTCAGGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335893" ref_strand="+" ref_description="SGN-E335893 [cTOE-6-L8]">
      <seq>tttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttcctccatttccatctgatgaacctggtgggaaagaaatcacgtttaagcgagttcttctgaataattgccaagaggcatttgaaggttctgacaaactgagggaagagatgagacgaatgactgctccggagcaggagtcggaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagctattgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggaactattaggacaagatcccaaaagctgtccagaagaagagaatgttgaagctatatgtcagttctttaacaccattggtaagcagcttgacaagaagcaaaagtcgaggcacatcaatgatatatatttcaaccaattgaaagaactatcgacaaaccctcagctggtagcacgcctaaggtttttggttcgtgatgtgctggatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="69213" stop="70464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69513" g_stop="69845" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69954" g_stop="70164" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="544" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E335893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69513" e_stop="69845"/>
          <exon e_start="69954" e_stop="70164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTAC</genome_strand>
        <mrna_strand>TTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG............................................................................................................GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476773" ref_strand="+" ref_description="SGN-E476773 [cSTB-45-N10]">
      <seq>tgaataattgccaagaggcatttgaaggtgctgacaaattgagggaagaggcgagacaaatgactgctccggagcaggagtcagaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagcttttgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggaactattaggacaagatcccaaaagctgtccagaagaagagaacgttgaagctatatgccaattctttaacaccattggtaagcagcttgacaagaagcaaaagtcaaggcacatcaatgatatgtatttcaaccgattgaaagaactatcaacaaatcctcagctggtagcacgcctaaagtttttggtgcgtgatgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="69346" stop="70456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69646" g_stop="69845" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69954" g_stop="70156" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="403" r_length="203" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E476773" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69646" e_stop="69845"/>
          <exon e_start="69954" e_stop="70156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCT</genome_strand>
        <mrna_strand>TGAATAATTGCCAAGAGGCATTTGAAGGTGCTGACAAATTGAGGGAAGAGGCGAGACAAATGACTGCTCCGGAGCAGGAGTCAGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTTTTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG............................................................................................................GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAACGTTGAAGCTATATGCCAATTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCAAGGCACATCAATGATATGTATTTCAACCGATTGAAAGAACTATCAACAAATCCTCAGCTGGTAGCACGCCTAAAGTTTTTGGTGCGTGATGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698505" ref_strand="+" ref_description="SGN-E698505 [FA06CC09]">
      <seq>accgcccatatacggaaagctgtccagaagaagagaatgttgaagctatatgtcagttctttaacaccattggtaagcagcttgacaagaagcaaaagtcgaggcacatcaatgatatatatttcaaccaattgaaagaactatccacaaaccctcagctggtagcacgcctaaggtttttggttcgtgatgtgctggatttacgtgccaataactgggtccctaggcgggaagaggtgaaagccaaaaccattaacgagatccactcggaagcagagaagaccttggggctgcgtcctggtgctacattaagcattagaaatgctcgtgctcctccaggtattcaagggaatttgggtcctggtggctatcccattaatcgacccggcactggtggtatgatgccagggatgccaggagcaaggaagatgcctgggatgccaggaatggataatgacaactgggaagttcctaggtcacgaatgccgagaggtgctcagcaaccattgattgggaaatcgccggccttgaacacaagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="69664" stop="70881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69961" g_stop="70196" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70277" g_stop="70581" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="541" r_length="305" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E698505" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69961" e_stop="70196"/>
          <exon e_start="70277" e_stop="70581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAGGTGATACACGATTTGCTTATGCAGTAGTTCTGACTAGTTAAGTCCACTTCTTTCTCATGATGTATTAACTTCTTTTATAGGTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACT</genome_strand>
        <mrna_strand>ACCGCCCATATACGGAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCCACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG................................................................................GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGCTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAATCGCCGGCCTTGAACACAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391796" ref_strand="+" ref_description="SGN-E391796 [TUS-24-F1](-)">
      <seq>attgctaccttgaggcaacagtattgtgttcaaggccggcgacttcccaatcaatggttgctgagcacctctcggcattcgtgacctaggaacttcccagttgtcattatccattcctggcatcccaggcatcttccttgctcctggcatccctggcatcataccaccagtgccgggtcgattaatgggatagccaccaggacccaaattcccttgaatacctggaggagcacgagcatttctaatgcttaatgtagcaccaggctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70900" stop="70037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70600" g_stop="70332" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E391796" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70600" e_stop="70332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTACCCTGAGGCAACAGTCTTGTGTTCAAGGCCGGCGACTTCCCAATCAATGGTTGCTGAGCACCTCTCGGCATTCGTGACCTAGGAACTTCCCAGTTGTCATTATCCATTCCTGGCATCCCAGGCATCTTCCTTGCTCCTGGCATCCCTGGCATCATACCACCAGTGCCGGGTCGATTAATGGGATAGCCACCAGGACCCAAATTCCCTTGAATACCTGGAGGAGCACGAGCATTTCTAATGCTTAATGTAGCACCAGGACGCA</genome_strand>
        <mrna_strand>ATTGCTACCTTGAGGCAACAGTATTGTGTTCAAGGCCGGCGACTTCCCAATCAATGGTTGCTGAGCACCTCTCGGCATTCGTGACCTAGGAACTTCCCAGTTGTCATTATCCATTCCTGGCATCCCAGGCATCTTCCTTGCTCCTGGCATCCCTGGCATCATACCACCAGTGCCGGGTCGATTAATGGGATAGCCACCAGGACCCAAATTCCCTTGAATACCTGGAGGAGCACGAGCATTTCTAATGCTTAATGTAGCACCAGGCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729687" ref_strand="+" ref_description="SGN-E729687 [LA21DB12]">
      <seq>cctgccttgaacacaagactgttgcctcagggtagcaatgtcggcatgagtggcaggagtagtgctctcttacaaggtagtggtggacctcctgtccgaccatcaggctatgtctctggtatggagcctgtatcacaagttccagtaccagttaagccatctccaactagtaccgttttgcctgttgctgggaaacctcaggctccagctgcaaggtcaaatcctgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttacagtgcattgaggaactcaaatcccctgccttctatcctgaggttgtcgagaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtctgctgaaaaggtttttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttaccaaaagcaccagcaaatttcggggagataatttcgaggctagttttgacgggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70262" stop="71640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70562" g_stop="71340" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E729687" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70562" e_stop="71340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCT</genome_strand>
        <mrna_strand>CCTGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704361" ref_strand="+" ref_description="SGN-E704361 [FA24AC12]">
      <seq>caatgtcggcatgagtggcaggagtagtgctctcttacaaggtagtggtggacctcctgtccgaccatcaggctatgtctctggtatggagcctgtatcacaagttccagtaccagttaagccatctccaactagtaccgttttgcctgttgctgggaaacctcaggctccagctgcaaggtcaaatcctgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttacagtgcattgaggaactcaaatcccctgccttctatcctgaggttgtcgagaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtctgctgaaaaggtttttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttaccaaaagcaccagcaaatttcggggagataatttcgaggctagttttgacgggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtnaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70297" stop="71741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70597" g_stop="71439" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E704361" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70597" e_stop="71439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTT</genome_strand>
        <mrna_strand>CAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTNAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585076" ref_strand="+" ref_description="SGN-E585076 [66794]">
      <seq>gctatgtctctggtatggagcctgtatcacaagttccagtaccagttaagctatctccaactagtaccgttttgcctgttgctgagaaacctcaggttccagctgcaaggtcaaatcccgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttgcagtgcattgaggaactcaaatcccctgccttctatcctgaagttgtcgagaaagccatatcacttggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtttgctaaaaaggtttttactgcttcagacttggccactggatgcttgaactttgcttctcagttggaagatcttgcgatggatttaccaaaagcaccagcaaatttcggggagataatttcaaagctagttttgacaggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttgtacgagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtattagattcacaagcacctgatgttgaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctcgatatcacttatcctcgcaatggcctttccgttgtgctcagtggactaaagcactgtatcacagtttttcataattggaactgtaacacaacacgtgagtttatgtgagttgtatacttttcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70368" stop="71754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70668" g_stop="71454" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E585076" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70668" e_stop="71454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAA</genome_strand>
        <mrna_strand>GCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCTATCTCCAACTAGTACCGTTTTGCCTGTTGCTGAGAAACCTCAGGTTCCAGCTGCAAGGTCAAATCCCGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTGCAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAAGTTGTCGAGAAAGCCATATCACTTGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTTTGCTAAAAAGGTTTTTACTGCTTCAGACTTGGCCACTGGATGCTTGAACTTTGCTTCTCAGTTGGAAGATCTTGCGATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCAAAGCTAGTTTTGACAGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTGTACGAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTATTAGATTCACAAGCACCTGATGTTGAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCGATATCACTTATCCTCGCAATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCA-CTGTATCACAGTTTTTCATAATTGGAACTGTA--ACACAACACGTGAGTTTATGTGAGTTGTATACTTTTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544698" ref_strand="+" ref_description="SGN-E544698 [TUS-67-C16]">
      <seq>ctggtatggagcctgtatcacaagttccagtaccagttaagccatctccaactagtaccgttttgcctgttgctgggaaacctcaggctccagctgcaaggtcaaatcctgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttacagtgcattgaggaactcaaatcccctgccttctatcctgaggttgtcgagaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtctgctgaaaaggtttttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttaccaaaagcaccagcaaatttcggggagataatttcgaggctagttttgacgggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttcccgtgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70377" stop="71712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70677" g_stop="71412" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E544698" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70677" e_stop="71412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAG</genome_strand>
        <mrna_strand>CTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCCGTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305190" ref_strand="+" ref_description="SGN-E305190 [cLEY-18-H24]">
      <seq>tggtatggagcctgtatcacaagttccagtaccagttaagccatctccaactagtaccgttttgcctgttgctgggaaacctcaggctccagctgcaaggtcaaatcctgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttacagtgcattgaggaactcaaatcccctgccttctatcctgaggttgtcgagaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtctgctgaaaaggattttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70378" stop="71370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70678" g_stop="71070" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E305190" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70678" e_stop="71070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACC</genome_strand>
        <mrna_strand>TGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGATTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546884" ref_strand="+" ref_description="SGN-E546884 [TUS-70-H17](-)">
      <seq>agaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcatttgtctgctaaaaaggtttttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcgatggatttaccaaaagcaccagcaaatttcggggagataatttcaaggctagttttgacaggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctcaggctctactggtcaaggagtgttagactcacaagcacctgatgtcgaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgctcgaggcaacgggctgctttacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaatgcaactgttcctatctttacaccattttaaagctgaatttgataacataagtttgtcttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70608" stop="71994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70908" g_stop="71694" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="800"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E546884" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70908" e_stop="71694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCA</genome_strand>
        <mrna_strand>AGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCATTTGTCTGCTAAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCGATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCAAGGCTAGTTTTGACAGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCAGGCTCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCGAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAG-GGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTCGAGGCAACGGGCTGCTTTACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACATAAGTTTGTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391797" ref_strand="+" ref_description="SGN-E391797 [TUS-24-F1]">
      <seq>agaactagtctcgagttttttttttttttttttggtgtaaagataggaacagttgcattttatgaactcacaagttcgacaaaacttaatataacaagtcaacgggaaaaaataaatgaaaaactaatgtaatacaaaacggctggactccgtcaagcagcccgttgcctcaagcaaatatggcgtataatttaccatgttgcaaaactgtctttcgtcgtctaatgaacacactttgggaaaagtatacaactcacataaactcacctgtcctttactacagttccaatgatgaaaaactgtgatacagctgctttagtccactgagcacaacggaaaggccatctcgaggataagtgatatggagcacattccattgacgaggatttgagctttttactggaacagatttttgcaggctttgacatcaggtgcttgtgagtctaacactccttgaccagtagggctagagctaatagctttcatgatggcagcaaataagtccttctggtataagtcatcggttaccttctgcaggatctcattcaccaacttgaagtccattgcccccgtcaaaactagcctcgaaattatctccccgaaatttgctggtgcttttggtaaatccattgcaagatcttccaattgaaaagcaaagttcaagcatccagtagcccaattcggtacaataaaaacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76448" stop="70689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71691" g_stop="70989" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E391797" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71691" e_stop="70989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAAACTTACGTTATCAAATTCAGCTTTAAAATGGTGTAAAGATAGGAACAGTTGCATTTTATGAACTCACAAGTTCGACAAAACTTAATATAACAAGTCAACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTTGAAGTCCATTGCCCCCGTCAAAACTAGCCTCGAAATTATCTCCCCGAAATTTGCTGGTGCTTTTGGTAAATCCATTGCAAGATCTTCCAATTGAGAAGCAAAGTTCAAGCATCCAGTAG-CCAAGTCTGTAGCAGTAAAAACCTTTT</genome_strand>
        <mrna_strand>AGAACTAGTCTCG--AGTTTTTTTTTTTTTTTTTTGGTGTAAAGATAGGAACAGTTGCATTTTATGAACTCACAAGTTCGACAAAACTTAATATAACAAGTCAACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTTGAAGTCCATTGCCCCCGTCAAAACTAGCCTCGAAATTATCTCCCCGAAATTTGCTGGTGCTTTTGGTAAATCCATTGCAAGATCTTCCAATTGAAAAGCAAAGTTCAAGCATCCAGTAGCCCAATTCGGTA-CAATAAAAACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544697" ref_strand="+" ref_description="SGN-E544697 [TUS-67-C16](-)">
      <seq>tactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttaccaaaagcaccagcaaatttcggggagataatttcgaggctagttttgacgggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttgccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaatgcaactgttcctatctttacaccattttaaagctgaatttgataacgtaagttttcttcagtttatctctaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70699" stop="76451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70999" g_stop="71704" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="723"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E544697" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70999" e_stop="71704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCT</genome_strand>
        <mrna_strand>TACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTGCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTT-TCTTCAGTTTATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445364" ref_strand="+" ref_description="SGN-E445364 [cSTA-45-G2]">
      <seq>caaattcgacaaaacttaatataacaagtcaaagggaaaaaataaatgaaaaactaatggaatacaaaacggctggactacgtaaagcagcccgttgcctcgagcaaatatggcgtataatttaccatgttgcaaaactgtctttcgtcgtctaatgaacacacgttgggaaaagtatacaactcacataaactcacctgttctttacagttccaattatgaaaaactgtgatacagttgctttagtccactgagcacaacggaaaggccattgcgaggataagtgatatcgagcacattccattgacgaggatttgagctttttactggaacagatttttgcaggcttcgacatcaggtgcttgtgaatctaatactccttgaccagtagggctagagctaatagctttcatgatggcagcaaataagtccttctggtataagtcatcggttaccttctgcaggatctcattcaccaactggaagtccattgcccctgtcaaaactagccttgaaattatctccccgaaatttgctggtgcttttggtaaatccatcgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="71919" stop="70754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71619" g_stop="71054" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E445364" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71619" e_stop="71054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCGACAAAACTTAATATAACAAGTCAACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTTGAAGTCCATTGCCCCCGTCAAAACTAGCCTCGAAATTATCTCCCCGAAATTTGCTGGTGCTTTTGGTAAATCCATTGCAAG</genome_strand>
        <mrna_strand>CAAATTCGACAAAACTTAATATAACAAGTCAAAGGGAAAAAATAAATGAAAAACTAATGGAATACAAAACGGCTGGACTACGTAAAGCAGCCCGTTGCCTCGAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACGTTGGGAAAAGTATACAACTCACATAAACTCACCTGTTC-TT--TACAGTTCCAATTATGAAAAACTGTGATACAGTTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATTGCGAGGATAAGTGATATCGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTCGACATCAGGTGCTTGTGAATCTAATACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTGGAAGTCCATTGCCCCTGTCAAAACTAGCCTTGAAATTATCTCCCCGAAATTTGCTGGTGCTTTTGGTAAATCCATCGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204218" ref_strand="+" ref_description="SGN-E204218 [cLEC-13-D13]">
      <seq>tttttttttatcaaattcagctttaaaatggtgtaaagataggaacagttgcattttatgaactcacaagttcgacaaaacttaatataacaagtcaacgggaaaaaataaatgaaaaactaatgtaatacaaaacggctggactccgtcaagcagcccgttgcctcaagcaaatatggcgtataatttaccatgttgcaaaactgtctttcgtcgtctaatgaacacactttgggaaaagtatacaactcacataaactcacctgtcctttactacagttccaatgatgaaaaactgtgatacagctgctttagtccactgagcacaacggaaaggccatctcgaggataagtgatatggagcacattccattgacgaggatttgagctttttactggaacagatttttgcaggctttgacatcaggtgcttgtgagtctaacactccttgaccagtagggctagagctaatagctttcatgatggcagcaaataagtccttctggtataagtcatcggttaccttctgcaggatctcattcaccaacttgaagtccattgcccccgtcaaaactagcctcgaaattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="71978" stop="70794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71685" g_stop="71094" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E204218" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71685" e_stop="71094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACGTTATCAAATTCAGCTTTAAAATGGTGTAAAGATAGGAACAGTTGCATTTTATGAACTCACAAGTTCGACAAAACTTAATATAACAAGTCAACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTTGAAGTCCATTGCCCCCGTCAAAACTAGCCTCGAAATTATCT</genome_strand>
        <mrna_strand>TTTTTTTTTATCAAATTCAGCTTTAAAATGGTGTAAAGATAGGAACAGTTGCATTTTATGAACTCACAAGTTCGACAAAACTTAATATAACAAGTCAACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTTGAAGTCCATTGCCCCCGTCAAAACTAGCCTCGAAATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620722" ref_strand="+" ref_description="SGN-E620722 [71426]">
      <seq>tgttcaaagctagttttgacaggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttgtacgagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtattagattcacaagcacctgatgttgaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctcgatatcacttatcctcgcaatggcctttccgttgtgctcagtggactaaagcaactgtatcacagtttttcataattggaactgtaaagaacaggtgagtttatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70801" stop="71735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71099" g_stop="71435" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E620722" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71099" e_stop="71435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTG</genome_strand>
        <mrna_strand>TGTTCAAAGCTAGTTTTGACAGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTGTACGAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTATTAGATTCACAAGCACCTGATGTTGAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCGATATCACTTATCCTCGCAATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAACTGTATCACAGTTTTTCATAATTGGAAC--T-GTAAAGAACAGGTGAGTTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247495" ref_strand="-" ref_description="SGN-E247495 [cLEF-42-G11]">
      <seq>ctagttttgacgggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataccatgcaactgttcctatctttacaccaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70808" stop="76448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71108" g_stop="71664" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71665" i_stop="75050" i_length="3386">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75051" g_stop="75075" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="581" r_length="25" r_score="0.760"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E247495" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71108" e_stop="71664"/>
          <exon e_start="75051" e_stop="75075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCTTTTGCTGGGTATTTGCATCTGCAGATTTTATTCTCTATTAGCTTTGCTTTTAGCTACTTGTTAGTAATAATGATGTACACTCAAAGTCTTTGTTGCGCCCGTTATCGTGTAGTTTCTTATTCTTCGGTGTGTACTACTATCTGTTGATGCATTCCTTTTGTATCTTGGTATTTTGTCGTCTCTTTTCTACAATTGTGTATGATAGAGGGTTTTATCAGAAACAACCTCTCTACCTCACAAAAGATAGGGGTAAGATTTGCTTATATCTTAAACTCTTCAAATCACAAGCTCAAAATCCTTTGATGTTTGGCGGAGTTAAGTATATAAGAATCTTATTCAATTCATAAACACTCAATTGAGAGCAGCCTCTTGTGTAACATATTCTTAGACGTGAAAGCACTTTTTAAGTTTCATATTTCATTCGTGGTTTAGTTGATTATCTTTTAAATAACTTAATTTTTATAAATATTTTTCACATTGATTAATCGATTTATATATTTTGAACTCTTTATTATGTTTGTACTTTCCCGCATAAATCAGTTTTTCTTATTAAAAGAAATTTCATATAATATCTGAAGTTTGCATAAAAGTTCTGATTAAATTTAAATCACACTGCAAAGTTCATTCGGGGGAAACGCTCCAGCTATTTTTATCCTCATTTTGAGCTATTATTATCCTCTTGGGCTTAATCATTCGGTATTTGAAAAGTTTGAAAAAAAATACGTTCATCAGAGATGTCGTTCATCCTCGAAGTTTGAATTCAAAATCTTTTATCTAAAAATAAAGAAAAATTATTTGTTTGATCACATCTTTTCATCAATTTTCATTCATAAAATTACATCAAATATATTATTATCGTTTAAGATTTGTTGATACTATGAAGTGAGTAGGTGATCTCATAATAATTAGGTGGTAACTTATGCTATCTAACTTTTCCAAATCTGGTAAAGAAATTTTGTTGCATGATGCAAATTCAAATTATTTGTAATATTAAAACAAATATCAAATATTAAAAATTCAGCATTTCAATTTAAAATAGTAAATTTATATATTAAAATGATTTATGACCATATAGATATCTAAGATTTATTAAACATGATATGAGGCAACTATAAGATTTATTAAACATGATAGTTCAACATTAAGGTGGCCATTGGTCATTTCTGTAAGAAAAAACTTAAAATCCATCAAACTTAGTTGAAGCCACCAACAATGCAAGATGGTATCAGGATCTCTTCGTCCCGATGGACGAGAATCCACACAAACACTCAAAACCATCAATACGGAATTCATCAAAGAGAGGACGCGAAATCCCTAGCTTCACCAGAAAATATAGTGTATAATGTAGAGGATGAATCATACGGACCACATCTCGTTGCTAGCAATGAACATATAGTATGCATGTATTACATGTATAAGAAGTTTCTTTACACTAAAAGGATAATAATGTGCTAGCCTACATGTCAACACAAGTTCGACAATGCTCAGCATTAACACACAAGTTTCTTACCACATTTAACTAGACGGTGGAAGACGGATCAAACCCTCAAAGCAACAGGGTCTTGCCAAGATAATTTTTGTTTTCCCAACCGAGAAGTGTCTTCTCCAACATTTCTACACACCAATAGCTTCACATCATCATTGAGGTTTTGGATTGGACTTCTCTTTGGCTCCTCGAGCTGCACCTGCTCAGAATTTCCATCTCTTTCCTCTTCTCCCATCTGTAAGGATTAGAAAGTCTAGAGGTAAATGATGTAAAAAGTGTATGACTAACAAAATAACGGAAAGAGTACGTGTTGATTAGTTTGAGACTTACCGAGATCTCATTCAAATCAAAGACCGGAGCACGAGTGGGCAATGCAGTTTCTTTGCCACTATGACCAGCATCCTGATTTAAATCAAAAGTTGGCGAGCTGCTCTGTAAGATAGCATTGTCTGCGATGCACAATCTCTCATCCTGCTTCAAATCATAGGCTGGAGCTCCTTTTCGGGATGACACATCCTTTCCCCTATATACTCTTGATTTACGGTTCAACTCTAAATCTGCATTGCGAAAAACAGATTCTTGTCTACCACCTAATCTGTGCTTTTGGTTCACATGAATATCGGGTATGTTCTGCGAAGCAACTACCTTTGCAACCTGTATCCTTCCGTTTGGTTTAGGGCCAGGAAGAGGGGGCAGTTTGTTTAGCTTGGCTTCCTTTTTTCTCGTAACTTGATCCCTTGACCTACTCCTGGGGTAAGTTTCAACATTTGGTAGGGATACTAGCTCTTTCCCTTTTGGAGTTGTTAAGGACTTCGATTGCAATAGATGCTTGTGCCTCTGGCGTAAGAAACTGCACAATCATGCAAAAAAAATCTGCACTTAGATTCAAATAGAAAAGGAACTCCACGAGCATTTCAAGAAAATGCATATGCACAGAAGTACAGTTCTTTTTTCTTAATTCTACTATGCAAGCTATATATTTTGAAGTCTTCGAATCAAGCTGAATTCAAGAATTCCTAAAGAAAATGAAACTATATCAAATCAATATGAACACCATTTGATATGTTGAACAAACTTACCGAACTTCAGCTTGTAATCTTAGTTTCCTCAGCTTTGAATCCTCCAGCTTGTGCCTTGCGGCATCAGTTTCCTGAAAGTTGAAGGTTACATGTAAGAAAACCGGTTGATCACACGCACACACACATTACTATTTACTCTAACAAAACATATCAGCATTCGATCATCTTGCAGTTTGAAGTATCATCGACTATGATGGACATAATCTATGAACTGTTACGCCAACACTTTGGTCTAGTGATAAGAGTGCACTGCGTGATGTGTGTTTACACACATTACGGATTGAACTCTCAGACAAACAAAGCTTAGTATTCCTTTTATGACAAAGGAACCCGCAGTCGCTATCCTTTGGGAGTGCACAAGGTAAATCCCACCCTTGTATAATAGCTCGCGAACCACACGGGAGAGATAAACCGCACTAGGAAAGCCCCATGCAACAAGCTCGACCCCGAAGGCCGACCCCCTGTTGTTGCAGGCAAAGGGTTTTGAACATGAGACCTCCATTATGAAAGTACCTAGCCGAACTATTTGAGCCACCCCGAAGGATAACAAAGCCTAATTTAGATGGGGCAGGAGAGAGCCGTCCCTGTCATCAAACCGTGCTAAGAGTTGTTTTAGAGAGAATTCCTAATAACTCCTAGGAAAAAACACAAACAAATTCAACCAAGGGATACAATCTCAGGTGAGACCTCAATAATGAAATGATGAAAAGGGCAACTCCAGATAGAAATTGAACAAAGAGACAGCAAATAACACTCTATAAAGGTTCAATGACTAGCGGAGACAAAAAAAAACACTAGATGATTTC</genome_strand>
        <mrna_strand>CTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATACCATGCAACTGTTCCTATCTTTACACCA-AAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACTCGAGACTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352360" ref_strand="+" ref_description="SGN-E352360 [cTOS-9-M20]">
      <seq>ctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaatgcaactgttcctatctttacaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70853" stop="71957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71153" g_stop="71671" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E352360" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71153" e_stop="71671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAAT</genome_strand>
        <mrna_strand>CTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414981" ref_strand="+" ref_description="SGN-E414981 [STM-20-D5]">
      <seq>ataggaacagttgcattttatgaactcacaaattcgacaaaacttaatataacaagtcaaaagggaaaaaataaatgaaaaactaatggaatacaaaacggctggactacgtaaagcagcccggtgcctcgagcaaatatggcgtataatttaccatgttgcaaaactgtctttcgtcgactaatgaacacacgttgggaaaagtatacaagtcacataaactcacctgttctttacagttccaattatgaaaaactgtgatacagttgctttagtccactgagcacaacggaaaggccattgcgaggataagtgatatcgagcacattccattgacgaggatttgagctttttactggaacagatttttgcaggcttcaacatcaagtgcttgtgaatctaatactccttgaccagtagggctagagctaatagctttcatgatggcagcaaataagtccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="71947" stop="70881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71647" g_stop="71181" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E414981" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71647" e_stop="71181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAACAGTTGCATTTTATGAACTCACAAGTTCGACAAAACTTAATATAACAAGTC-AACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCT</genome_strand>
        <mrna_strand>ATAGGAACAGTTGCATTTTATGAACTCACAAATTCGACAAAACTTAATATAACAAGTCAAAAGGGAAAAAATAAATGAAAAACTAATGGAATACAAAACGGCTGGACTACGTAAAGCAGCCCGGTGCCTCGAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGACTAATGAACACACGTTGGGAAAAGTATACAAGTCACATAAACTCACCTGTTC-TT--TACAGTTCCAATTATGAAAAACTGTGATACAGTTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATTGCGAGGATAAGTGATATCGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTCAACATCAAGTGCTTGTGAATCTAATACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602290" ref_strand="+" ref_description="SGN-E602290 [55431]">
      <seq>gaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtattaattcacaagcacctgatgttgaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctcgatatcacttatcctcgcaatggcctttccgttgtgctcagtggactaaagcaactgtatcacagtttttcataattggaactgtaaagaacaggtgagtttatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70882" stop="71737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71182" g_stop="71437" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E602290" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71182" e_stop="71437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAG</genome_strand>
        <mrna_strand>GAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTATTA-ATTCACAAGCACCTGATGTTGAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCGATATCACTTATCCTCGCAATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAACTGTATCACAGTTTTTCATAATTGGAAC--T-GTAAAGAACAGGTGAGTTTATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356729" ref_strand="+" ref_description="SGN-E356729 [cTOS-21-I12]">
      <seq>aaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaatgcaactgttcctatctttacaccattttaaagctgaatttgataacgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70883" stop="71983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71183" g_stop="71679" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="514"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E356729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71183" e_stop="71679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAAC</genome_strand>
        <mrna_strand>AAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616000" ref_strand="+" ref_description="SGN-E616000 [65805]">
      <seq>gtaaaaagctcaaatcctcgtcaatggaatgtgctcgatatcacttatcctcgcaatggcctttccgttgtgctcagtggactaaagcaactgtatcacagtttttcataattggaactgtaaagaacaggtgagtttatgtgagttgtatacttttcccaacgtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgctcgaggcaacgggctgctttacgtagtccagccgttttgtattccattagtttttcatttattttttcccttttgacttgttatattaagttttgtcgaatttgtgagttcataaaatgcaactgttcctatcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="70990" stop="71954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71290" g_stop="71662" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E616000" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71290" e_stop="71662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCC-GTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTA</genome_strand>
        <mrna_strand>GTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCGATATCACTTATCCTCGCAATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAACTGTATCACAGTTTTTCATAATTGGAACTGT---AAAGAACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAACGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTCGAGGCAACGGGCTGCTTTACGTAGTCCAGCCGTTTTGTATTCCATTAGTTTTTCATTTATTTTTTCCCTTTTGACTTGTTATATTAAGTTTTGTCGAATTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291061" ref_strand="+" ref_description="SGN-E291061 [cLET-8-I9]">
      <seq>ttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaatgcaactgttcctatctttacaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="71094" stop="76456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71394" g_stop="71679" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71680" i_stop="72480" i_length="801">
            <donor d_prob="0.619" d_score="0.72"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72481" g_stop="72498" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="304" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E291061" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71394" e_stop="71679"/>
          <exon e_start="72481" e_stop="72498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCTTTTGCTGGGTATTTGCATCTGCAGATTTTATTCTCTATTAGCTTTGCTTTTAGCTACTTGTTAGTAATAATGATGTACACTCAAAGTCTTTGTTGCGCCCGTTATCGTGTAGTTTCTTATTCTTCGGTGTGTACTACTATCTGTTGATGCATTCCTTTTGTATCTTGGTATTTTGTCGTCTCTTTTCTACAATTGTGTATGATAGAGGGTTTTATCAGAAACAACCTCTCTACCTCACAAAAGATAGGGGTAAGATTTGCTTATATCTTAAACTCTTCAAATCACAAGCTCAAAATCCTTTGATGTTTGGCGGAGTTAAGTATATAAGAATCTTATTCAATTCATAAACACTCAATTGAGAGCAGCCTCTTGTGTAACATATTCTTAGACGTGAAAGCACTTTTTAAGTTTCATATTTCATTCGTGGTTTAGTTGATTATCTTTTAAATAACTTAATTTTTATAAATATTTTTCACATTGATTAATCGATTTATATATTTTGAACTCTTTATTATGTTTGTACTTTCCCGCATAAATCAGTTTTTCTTATTAAAAGAAATTTCATATAATATCTGAAGTTTGCATAAAAGTTCTGATTAAATTTAAATCACACTGCAAAGTTCATTCGGGGGAAACGCTCCAGCTATTTTTATCCTCATTTTGAGCTATTATTATCCTCTTGGGCTTAATCATTCGGTATTTGAAAAGTTTGAAAAAAAATACGTTCATCAGAGATGTCGTTCATCCTCGAAGTTTGAATTCAAAATCTTTTATCTAAAAATAAAGAAAAATTA</genome_strand>
        <mrna_strand>TTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCAAAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595320" ref_strand="+" ref_description="SGN-E595320 [38590]">
      <seq>agagcagctcgcctacttttgatttaaatcaggaaactggtcatagtggcaaagaaactgcattgcccactcgtgctccggtctttgatttgaatgagatctcgatgggagaagaggaaagagatgtaaatttcgagcaggtgcagctcgaggagccaaagagaagtcctatccaaaacctcaatgatgatgtgaagctattggtgtgtagaaatgttggagaagacacttctcggttgggaaaacaaaaattatcatggcaagaccctgttgctttgagggtttgatccgtcttccaccgtttagttaaatgtggtaagaaaattgtgttaatgctgagcattgtcaaacttgtgttgacatgtaggcctacattatccttttagtgtaaagaaacttcttatacatgtcatacatgcacactatatgttcattgctagcaacgagatgtggtccgtgtaactcatcctctacattaaatatcatatatcttcagcagtttttctggtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="73924" stop="72729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73624" g_stop="73521" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73520" i_stop="73426" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73425" g_stop="73046" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="477" r_length="373" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E595320" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73624" e_stop="73521"/>
          <exon e_start="73425" e_stop="73046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAGCTCGCCAACTTTTGATTTAAATCAGGATGCTGGTCATAGTGGCAAAGAAACTGCATTGCCCACTCGTGCTCCGGTCTTTGATTTGAATGAGATCTCGGTAAGTCTCAAACTAATCAACACGTACTCTTTCCGTTATTTTGTTAGTCATACACTTTTTACATCATTTACCTCTAGACTTTCTAATCCTTACAGATGGGAGAAGAGGAAAGAGATGGAAATTCTGAGCAGGTGCAGCTCGAGGAGCCAAAGAGAAGTCCAATCCAAAACCTCAATGATGATGTGAAGCTATTGGTGTGTAGAAATGTTGGAGAAGACACTTCTCGGTTGGGAAAACAAAAATTATCTTGGCAAGACCCTGTTGCTTTGAGGGTTTGATCCGTCTTCCACCGTCTAGTTAAATGTGGTAAGAAACTTGTGTGTTAATGCTGAGCATTGTCGAACTTGTGTTGACATGTAGGCTAGCACATTATTATCCTTTTAGTGTAAAGAAACTTCTTATACATGTAATACATGCATACTATATGTTCATTGCTAGCAACGAGATGTGGTCCGTATGATTCATCCTCTACATT</genome_strand>
        <mrna_strand>AGAGCAGCTCGCCTACTTTTGATTTAAATCAGGAAACTGGTCATAGTGGCAAAGAAACTGCATTGCCCACTCGTGCTCCGGTCTTTGATTTGAATGAGATCTCG...............................................................................................ATGGGAGAAGAGGAAAGAGATGTAAATTTCGAGCAGGTGCAGCTCGAGGAGCCAAAGAGAAGTCCTATCCAAAACCTCAATGATGATGTGAAGCTATTGGTGTGTAGAAATGTTGGAGAAGACACTTCTCGGTTGGGAAAACAAAAATTATCATGGCAAGACCCTGTTGCTTTGAGGGTTTGATCCGTCTTCCACCGTTTAGTTAAATGTGGTAAGAAA-AT-TGTGTTAATGCTGAGCATTGTCAAACTTGTGTTGACATGTAGGC---C-TA-CATTATCCTTTTAGTGTAAAGAAACTTCTTATACATGTCATACATGCACACTATATGTTCATTGCTAGCAACGAGATGTGGTCCGTGTAACTCATCCTCTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572665" ref_strand="+" ref_description="SGN-E572665 [31855]">
      <seq>atttttantgtgtataaanggcaaaacccacctcatacatacaacatatgaccataaagattgtatctttatgccataaataccctttctgcaacatccaaaaaaaatttcccaatcttcatcatctcttcactatctttccaataacaaaaacaagaacaatgtataatagtagtatatatagtattttcttttgtttaggttcttcatttatgtgggctttttggggtttgtcttggtcaagagaaccttcttgtcacctctctttctttctctataactccttttttttgtttggccctgttgttgtgttgttattattgtttctcccctctttccttctctcttatctgcttccttttgccccttttcttggttttttttcaacttttttgtctctttatttctccaagatctgatttttttatgtgaagggataagtttgattcatctgtgatctgatatgtctaagaagatgaaaaggggtgttttggaatcatcatcttatggtgtttttgaagacacaaaggctagtttgaaacatcaaacacttttgcaggactataaagagctccagaaggaaactgatgggcataaggcacaagttggaggattcaaagctgaggaagctaagattactagctgaagttccgttcttacgccagaggcacaagcatctatttgcataaggtccttaagttcttccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76231" stop="73708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75934" g_stop="75354" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75353" i_stop="74341" i_length="1013">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74340" g_stop="74270" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="652" r_length="72" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74269" i_stop="74041" i_length="229">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74040" g_stop="73983" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="709" r_length="57" r_score="0.793"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-E572665" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75934" e_stop="75354"/>
          <exon e_start="74340" e_stop="74270"/>
          <exon e_start="74040" e_stop="73983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTCATGTGTATAAGGCTAAACCCACCTCATACATACAACATATGACCATAAAGATACAATCTTTATGCCATAAATGCCCTTTCTGCAACATCCAAAAAAAAAAATTCCCAATCTTCATCACCTCTTCACTGTCTTTCCAATAACAAAAACAAGAACAATGTATAATAGTAGTATATATAGTATTTTCTTTTGTTATGGTTTTCCATTTATGTGGGCTTTTTGGGGTTTGTCTTGGTCAAGAGAACCTTCTTGCCACCTCTCTTTCTTTCTCTATAACTCCTTTTTTTTGTTTGGCCCTGTTGTTGTGTTGTTATTATTGTTTCTCCCCTCTTTACTTCTCTCTTATCTGCCTCCTTTTGCTCCTTTTCTTGG-TTTCTTTCAACTTTTTTGTCTCTTTATTTCTCCAAGATCTGATCTTTTTATGTGAAAGGATTAGTTTGATTCATCTGTGATCTGATATGTCTAAGAAGATGAAAAGGGGTGCTTTGGAATCATCATCTTATGGTGTTTTTGAAGACACAAAGGATAGGTTGAAACATCAAACACTTCTGCAGGACTATCAAGAGCTCCAGAAGGTATAAAAATCTTGTCTTTTTTCTTTTTTTGATCATTTGCTATGAAGAAATGGACTTTTTTGCTGTGTTGAATGGTTGATTTCTCTCTCTGTTGGAGTATCTTGTTCTTGCTTGTTAGAAATGTGGTGCCATTTGGTGTAGGAACCTCCTTTGAGTTTGATCTGTTTCCTATCAGTGATTCATAGAATTGTTAATTTTTTTTTATAATTGTGCGTGCACCTTGACTAATTTCACGGGAAACGGGCCACCTCCTGTTAACAACATGTACTAGATATAAAGAAATCATCTAGTGTTTTTTTTTGTCTCCGCTAGTCATTGAACCTTTATAGAGTGTTATTTGCTGTCTCTTTGTTCAATTTCTATCTGGAGTTGCCCTTTTCATCATTTCATTATTGAGGTCTCACCTGAGATTGTATCCCTTGGTTGAATTTGTTTGTGTTTTTTCCTAGGAGTTATTAGGAATTCTCTCTAAAACAACTCTTAGCACGGTTTGATGACAGGGACGGCTCTCTCCTGCCCCATCTAAATTAGGCTTTGTTATCCTTCGGGGTGGCTCAAATAGTTCGGCTAGGTACTTTCATAATGGAGGTCTCATGTTCAAAACCCTTTGCCTGCAACAACAGGGGGTCGGCCTTCGGGGTCGAGCTTGTTGCATGGGGCTTTCCTAGTGCGGTTTATCTCTCCCGTGTGGTTCGCGAGCTATTATACAAGGGTGGGATTTACCTTGTGCACTCCCAAAGGATAGCGACTGCGGGTTCCTTTGTCATAAAAGGAATACTAAGCTTTGTTTGTCTGAGAGTTCAATCCGTAATGTGTGTAAACACACATCACGCAGTGCACTCTTATCACTAGACCAAAGTGTTGGCGTAACAGTTCATAGATTATGTCCATCATAGTCGATGATACTTCAAACTGCAAGATGATCGAATGCTGATATGTTTTGTTAGAGTAAATAGTAATGTGTGTGTGCGTGTGATCAACCGGTTTTCTTACATGTAACCTTCAACTTTCAGGAAACTGAT-GCCGCAAGGCACAAGCTGGAGGATTCAAAGCTGAGGAAACTAAGATTACAAGCTGAAGTTCGGTAAGTTTGTTCAACATATCAAATGGTGTTCATATTGATTTGATATAGTTTCATTTTCTTTAGGAATTCTTGAATTCAGCTTGATTCGAAGACTTCAAAATATATAGCTTGCATAGTAGAATTAAGAAAAAAGAACTGTACTTCTGTGCATATGCATTTTCTTGAAATGCTCGTGGAGTTCCTTTTCTATTTGAATCTAAGTGCAGATTTTTTTTGCATGATTGTGCAGTTTCTTACGCCAGAGGCACAAGCATCTATTGCAATCGAAGTCCTTAACAACTCCAAAA</genome_strand>
        <mrna_strand>ATTTTTANTGTGTATAAANGGCAAAACCCACCTCATACATACAACATATGACCATAAAGATTGTATCTTTATGCCATAAATACCCTTTCTGCAACATCC--AAAAAAAATTTCCCAATCTTCATCATCTCTTCACTATCTTTCCAATAACAAAAACAAGAACAATGTATAATAGTAGTATATATAGTATTTTCTTTTGTTTAGGTTCTTCATTTATGTGGGCTTTTTGGGGTTTGTCTTGGTCAAGAGAACCTTCTTGTCACCTCTCTTTCTTTCTCTATAACTCCTTTTTTTTGTTTGGCCCTGTTGTTGTGTTGTTATTATTGTTTCTCCCCTCTTTCCTTCTCTCTTATCTGCTTCCTTTTGCCCCTTTTCTTGGTTTTTTTTCAACTTTTTTGTCTCTTTATTTCTCCAAGATCTGATTTTTTTATGTGAAGGGATAAGTTTGATTCATCTGTGATCTGATATGTCTAAGAAGATGAAAAGGGGTGTTTTGGAATCATCATCTTATGGTGTTTTTGAAGACACAAAGGCTAGTTTGAAACATCAAACACTTTTGCAGGACTATAAAGAGCTCCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTGATGGGCATAAGGCACAAGTTGGAGGATTCAAAGCTGAGGAAGCTAAGATTACTAGCTGAAGTTCC.....................................................................................................................................................................................................................................GTTCTTACGCCAGAGGCACAAGCATCTATTTGCAT-AAGGTCCTTAAGTTCTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358590" ref_strand="+" ref_description="SGN-E358590 [cLHT-22-J2]">
      <seq>taattttgtggtgaaaaaatggcgtctacaagtgctttcacagctgggatgtcaaatcttcatagcttcaaaaaaccgtgtcctaatgcaaatcaagttggtatgtggactttatcaagacatggctgtcgaaaggttttagataatcccagacctctgcaaatatgttctctgtttggaggaaaaaaggacaataatgagcagaacaacgatgctccttcaaaggcaggtctttttggcaacatgcaaaacttatacgagacagtgaagaaggcgcaaaatgtggttcaagttgaggcagtgcgagtacaaaaagagcttgctttagcagagtttgatggatactgtgaaggtgaactaatcaaggtaacactctctggaaatcagcagccgatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcatacaaggatgcgcatcagaaaagtgtactggcaatgaaggaaagaatgagtgatcttgctcagagtttgggaatgccagcaagccttggtgaaagattcaaacagtaaaaaaaaaattatcttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76447" stop="83435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76747" g_stop="76816" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79476" g_stop="79630" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="225" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80507" g_stop="80607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="326" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80714" g_stop="80753" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="366" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="438" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82357" g_stop="82413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="495" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83039" g_stop="83135" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="593" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E358590" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76747" e_stop="76816"/>
          <exon e_start="79476" e_stop="79630"/>
          <exon e_start="80507" e_stop="80607"/>
          <exon e_start="80714" e_stop="80753"/>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82413"/>
          <exon e_start="83039" e_stop="83135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCAGTAAGCACAATTTCTCCTCAGTATCCTTATGTAAACACTTTTCCACTTTAGTTAACATTTTTTGGGGATTTTTTTAGTTTAGAGAACTATTAGTTTGCCCTAAAAGAAAATATATTATTTTGTATTGGAAAGAATGTCTTGGATTTATATAGTCAATTAAACTAATATGGGACTGTGGTGAATTATTTTGAGAACAAATTGGCAATTTAATTAGTAAGTCCAATTTATCTTGCTTGGTTCAGATATTTAGAAAATGATATGAATAAGCTTAAATGAAGAAGTGGGGTTCATATAAACGACCCTAACTTGTTTGGGGCTAAGGCATTGTTGTTGTTATGGATTATGTTGGTGTGGAGTTCTTAATTTCTAATGGGGTTGTGTTGATAGTATACTAAATGCCATAAAAAATGAAGAGAGCCATTCGGCTGAAGCTGTTAGATTTCTTGATATGAAGTTAGCAACTTTCTTTGTTGAGAAGGTCTAATTTTGGATGGTAATCACAACAAATCCAATTTGTTTGAGGCTAAGGCATTGTTGTTGTTGTTGTTGGTCATGGTGGTGGTTACAATTCTTGATTGCTAATGGGGTTGTGTTAGTTTAGAAAATGCCATAAATATGAATATGGCCATTTGGTCGAAGCTTTAGCTTTCTTGATATTAAGTTAGCAACCTTCTTTGTTGAAAAAGTCTAATTTTGATGGTAATCACAAAATTTTACGACCCTTGAAGGAAGTTCTATCCAGCTTGTTTGGGGCTAAGACGTTGTTGTTACTACTTATGTTGGTTGGAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTTTATCAAAATGCCTTAAAAAACAAACATAGCCATTCATCGAAGCTATTAGCTTTCTTGTGTAATGCTAGGAACTTTCTTTGTTTAAAATCGCAATTTTGATGGCAATCACAAAATTTCCCAACCTTGGAAGGAAATTCTATCCAAGTTGCTTGGGACTAAGGCATTATTGTCATTATGGCTTATGTTGGTGTAGAGTTCTTAATGGCTAATGGGGTTGTGTTGAAAGCTTACAAAATGCCCTAAAGATGAATATAACCATTCAGTCGAAGCTATTAGCTTTCTCGATATAAAGTTAGCAACTTTCTTTGTTGAAAAATGCTAATTTTGATGATAATCACAAAATTTTCCAACCCTTGGATTTGTAAGTTATAGACTTATATCCAACTTGTTTGGGGCTAAGATGTTGTTGTTATGGCTTATGTTGGTGTAGAGTTCTTGATTGCTAATGGGTTTGTGTTGATAGTATACCAAATGTCCCAAAAAAATGAAGAGAGACATTCGGTTGAAGCTATTAACTTTATTGATATAAAGTTAGCAACTTTATTTTGTTGAAAAATTCTAGTTTCGATGATAATCGCAAGTTCTTCTAACCCTTGGAAGTTCTATCCATTATCCAACTTGTTTGGGGAGTCTGGGCTAAGGCATTGTTGGTGTTATGGCTTATGTTCGTGTATAGTGTATAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTACAAAATACCCTAAAAACCCAAGAGAGACATTCGGTCGAAGCTTTTAGCTTCTTGATATAAAGGTAACAATTTATTTTTTTGGATTAGTCTGATTTCGATGTTAAGCACAAAAAATTCAAACCCTTGTAAGTTCTATATACACATACACAAACAAAAATAAAAGAAAATCCCACATATATGTTTATGTTAAGTTTGTGCCTATTGCCATAAAGAAGTAGCAGAGTATATGTAGCAAAAAGTTAATGAATCAGACTCAGTATTTTCAACATGAAGTATAGACTTGTGTGTGAAGAACCACTAAAATTTCAAGCAATGAAATTTTAGAGGTGTTTCAAACAATTATTTACACAGGGAATAATAGATTTAACCAAGCTTCAAACTTAATTACCTCGTGTTTGAGTAACACGCTGCGCCTTCTGTTGATTAGGTCACTGTATCTCGGGGATGTGTAATTCTGATGCCCTTTCGTTTTCTTATCCTCAATCAATATAAGTTTATTCGTGAATTGTTTTCGAGAAATGATACTTATAAAAAGCTAAATGTTGTGGTTATTTATACGCGTCAAGAATTTCTTTTATGGTTAATAATTTAATTTCTAACCAAATGTTGTATGGAAGTCAGATTGCCCTTATGATGAAAATTATAGTAACAAAATGAAATGACTTGATACTTATCCATGATTTGTAGATAAGTAACAACCTTAGTTGCTCGGTCTCTTCACTTTTGGTGCCGCACCCTTGTCGACACAATGTGGAGTGGGTGTGGGACCCATACCTAACCTGGTCAACTAATTTTTAGTGCTTTGACCAAATTCGAGGAAGGAATTCTGGACTGATTCAATGAATTTTATAATCAAAATAAACACTAATGTGAATTCTCCACTTACATTAACTAAAATAAATCTTACATTTAACTCGAAAAAGAAAATGTATTAATATGCTTATTGAAATTTACTGAGTTATAGTTTTATATAGGCTTGATACACAGTTTTCTCCCTGAGTACCGTCTTGGAGTTCTTTATTCAGCATTCAGTTTACTCTTACAAGTGCTATACCTCCCTGGAAAAATTAAGCACTAACAAAAAATATTTCCTTTTTTACAATTTTGGTCTTTGCAGAAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAGGTATCTGAGTATATCCCTTTCCTTGTATAATATTGTATTGGTTACACTGACATTGGAGCTATCTTGTTTGATGACTTGTCGGTGATCATTTTAAGCTATGTGTAAGCACATAAAGACTAGAATGAAAAATCTTCTTATAGTAGCTTGCTAGTGTTATTGTTAATATTTATATTTTTGCTTCTAGTAGCTGCCATTCTCATAAAGTTGATTAACCGAATAAAACAGAACATGTCTTCATCACAAGGAGAATCACAAACCAAATTATCCGAGCTGTCTGCTGGAAAATCTTGTTTTTAACTTTAAAGCTTGATATCCTCAGCCAGTAAAGAAGTTGATAAAGGGAGAAGGTTAGAGGGATGGGTCCATTATCAACCGAGTTATGAACCGAAAAAAAATGAAATTAGTGAATTCAACTTGTATAAGTTTAAGGCTTATATGTTGTTGTTTACTACTTTACTTTCACTGGACACTCTGAAGATGGTGTTTGACCAAACTTGTTGGAGAAGAAAAACTGTTTTTGAGTAGAAGCAAAAGCTATTTTTGAGAAAATAAAAAAATATGCTCTCGATTTTTGAATAGCACTTCTAAGAAAATATATGTGGAAACACTTTGTGATAGCTTGACCAGATACTAATTGCTGCTCAAGTATTTTTTTAGATCGGTTAGCATAACACAAATTGTTTCTCGTCAAAAGTACTTTTTTGTAAGAACACTTCCCAAAATTAGCTGATTTTAGAAGCTTGGCCAAATTGGCTATTATAAGCATACTAATTATTCTATATTCACTTTTCTTATGCGTCACCTGTTGGTTCACTCGTTAACAATGTTATGCTATTTCACTGTAACCAACCTCAGGTTTTTTTATATTTTTCTTAGGCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTTGTATGTTTCTAATAGTGCACTTTATAATACGTTTTTAACCTTTATGTGAGCTAATCTTTAAGAGAATGCCACATAAATATTCATTTTTGGTGGTTTGTGTTTCCAGAGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAGGTATGTTCTTTTCTTGTTTTATTTTGGTGTCATCTAACTGAAGAGATCACTTCTGATCGAATGGATGTACTAATTCGACTATTCCAGAAGTTAAGATGCAATCTGGGAACCAATCTTAGAAAAATGACAAAAATGGTCCCTTTATGTTTAAGTTTAGGTTCAATATAGTCCCTTGAAACAGTTTTGCTCTTTTTAGTTTTGCCACTTTTAGTCCCCATCTAATATTTGTGGAGCTTTGTTGGTTAGATTTGATGGTATGAAAAAATGGACATTAGTGGGAACTCACGTTTAATGAAACAATTTCTTAGTTTCTGCTATTTGATTTATTTATTTCTAGAGTCTGCTACAACATTTTGAGGTAATTTCTGATATACTTTTTATTGTCTAGTGCAATTCTCAGTGTTGCGTGAATTTGATTAGACTTTCTTGATGTTTATGATTTAAAAAAATACTTCTACTGTTTCCGTCAAATCTATTGAACATTAATATTTGACAGGGACTAAAGTATTTAACTTTTGGCAAATTTAAATTACCAAAACTGTCCAATGCAACTTAATGACTATGAACCTACCCTCAAACAGAAGGGAACATTTTTGTTATTTTCTCGCCAATTTACTTGGCAACTTAAGTGTTGGGTCTGCACACAATTGAACAACCTATGTTCTAGACGTAGAATGCTCAGCCTTGGCCTAGTAGTTCTCGTGTCATTTTTGTCAAAACCTTCGATTACTAAGGCACAGTTGCTGTAGACAGACCTTGATAAGTAGAAAATGTGGAGAAATTCCATTTCGATACACTTTATGGGAACTTATAAATATTTACATCATTTGCAGGTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTGGTAAGAACCTCAAACTTGTTCCGTTTTACGTGACACTCTCTCCTTTTTATTCTGTTTTATATTTAGAAACAATACGACTTAAAACTTTCACCCTTCATGACATGATTTTAATACCACAAAAACGTCATGACATGACTGACATGCTTAAGATCACAAATTCCAAAAGTCTTTCTTATTTCCTTTAACATCGTCTCCTAAACTCTGTCCTATGTCAAACCCTTTCACTTAAGGGGCTTAACGAAGGTTCTCTATCTTCCAAAAGTCTTGGTTGACAGAGTTACTTGATACCTATATTGCATGAACTCTTCAATAATGTCGATGAGTACCTATCACGAGCGTGCAACACCATTTTAGGAGAGTTAGAGCAACATAGTAAGGTACTTGTCTTAATGGGAAGTAGCAGGTACCACAACAAGCTTGACTCGAGCACCACAATTATAAGAAAAAACAACGATTCACTATGTATACCCTAATGTGCCACGAGCCTCCGACCTAACAATTGGACGTAAAGGCACTTCATCGACTGAGTAATCCTCATTCGTGAAGGATTTCATGTAGGATCATATTTTCCGATATTTACTAGTACTCGTATCTTCTTGTTATTTTGTTGTCGTTATTTTTTCAGGCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGT-AAAAAAAAATTATCTTCATGA</genome_strand>
        <mrna_strand>TAATTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATGTCAAATCTTCATAGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACATGGCTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT..........................................................................................................AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTCTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAAGCCTTGGTGAAAGATTCAAACAGTAAAAAAAAAATTATCTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349030" ref_strand="+" ref_description="SGN-E349030 [cTOF-29-H16]">
      <seq>ttttgtggtgaaaaaatggcgtctacaagtgctttcacagctgggatttcaaatcttcatagcttcaaaaaaccgtgtcctaatgcaaatcaagttggtatgtggactttatcaagacctggttgtcgaaaggttttagataatcccagacctctgcaaatatgttctctgtttggaggaaaaaaggacaataatgagcagaacaacgatgctccttcaaaggcaggtctttttggcaacatgcaaaacttatacgagacagtgaagaaggcgcaaaatgtggttcaagttgaggcagtgcgagtacaaaaagagcttgctttagcagagtttgatggatactgtgaaggtgaactaatcaaggtaacactgtctggaaatcagcagccgatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcatacaaggatgcgcatcaganaagtgtactggcaatgaaggaaagaatgagtgatcttgctcagagtttgggaatgccagcaggccttggtgaaggattcaaacagtaaaaaaaattatcttcatgagtttcaattttgtaagctagcagacactaagtttatttttgcattaaaattatgaatacaatttttattatttattgtaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76450" stop="83518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76750" g_stop="76816" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79476" g_stop="79630" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="222" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80507" g_stop="80607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="323" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80714" g_stop="80753" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="363" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="435" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82357" g_stop="82413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="492" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83039" g_stop="83230" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="684" r_length="192" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E349030" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76750" e_stop="76816"/>
          <exon e_start="79476" e_stop="79630"/>
          <exon e_start="80507" e_stop="80607"/>
          <exon e_start="80714" e_stop="80753"/>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82413"/>
          <exon e_start="83039" e_stop="83230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCAGTAAGCACAATTTCTCCTCAGTATCCTTATGTAAACACTTTTCCACTTTAGTTAACATTTTTTGGGGATTTTTTTAGTTTAGAGAACTATTAGTTTGCCCTAAAAGAAAATATATTATTTTGTATTGGAAAGAATGTCTTGGATTTATATAGTCAATTAAACTAATATGGGACTGTGGTGAATTATTTTGAGAACAAATTGGCAATTTAATTAGTAAGTCCAATTTATCTTGCTTGGTTCAGATATTTAGAAAATGATATGAATAAGCTTAAATGAAGAAGTGGGGTTCATATAAACGACCCTAACTTGTTTGGGGCTAAGGCATTGTTGTTGTTATGGATTATGTTGGTGTGGAGTTCTTAATTTCTAATGGGGTTGTGTTGATAGTATACTAAATGCCATAAAAAATGAAGAGAGCCATTCGGCTGAAGCTGTTAGATTTCTTGATATGAAGTTAGCAACTTTCTTTGTTGAGAAGGTCTAATTTTGGATGGTAATCACAACAAATCCAATTTGTTTGAGGCTAAGGCATTGTTGTTGTTGTTGTTGGTCATGGTGGTGGTTACAATTCTTGATTGCTAATGGGGTTGTGTTAGTTTAGAAAATGCCATAAATATGAATATGGCCATTTGGTCGAAGCTTTAGCTTTCTTGATATTAAGTTAGCAACCTTCTTTGTTGAAAAAGTCTAATTTTGATGGTAATCACAAAATTTTACGACCCTTGAAGGAAGTTCTATCCAGCTTGTTTGGGGCTAAGACGTTGTTGTTACTACTTATGTTGGTTGGAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTTTATCAAAATGCCTTAAAAAACAAACATAGCCATTCATCGAAGCTATTAGCTTTCTTGTGTAATGCTAGGAACTTTCTTTGTTTAAAATCGCAATTTTGATGGCAATCACAAAATTTCCCAACCTTGGAAGGAAATTCTATCCAAGTTGCTTGGGACTAAGGCATTATTGTCATTATGGCTTATGTTGGTGTAGAGTTCTTAATGGCTAATGGGGTTGTGTTGAAAGCTTACAAAATGCCCTAAAGATGAATATAACCATTCAGTCGAAGCTATTAGCTTTCTCGATATAAAGTTAGCAACTTTCTTTGTTGAAAAATGCTAATTTTGATGATAATCACAAAATTTTCCAACCCTTGGATTTGTAAGTTATAGACTTATATCCAACTTGTTTGGGGCTAAGATGTTGTTGTTATGGCTTATGTTGGTGTAGAGTTCTTGATTGCTAATGGGTTTGTGTTGATAGTATACCAAATGTCCCAAAAAAATGAAGAGAGACATTCGGTTGAAGCTATTAACTTTATTGATATAAAGTTAGCAACTTTATTTTGTTGAAAAATTCTAGTTTCGATGATAATCGCAAGTTCTTCTAACCCTTGGAAGTTCTATCCATTATCCAACTTGTTTGGGGAGTCTGGGCTAAGGCATTGTTGGTGTTATGGCTTATGTTCGTGTATAGTGTATAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTACAAAATACCCTAAAAACCCAAGAGAGACATTCGGTCGAAGCTTTTAGCTTCTTGATATAAAGGTAACAATTTATTTTTTTGGATTAGTCTGATTTCGATGTTAAGCACAAAAAATTCAAACCCTTGTAAGTTCTATATACACATACACAAACAAAAATAAAAGAAAATCCCACATATATGTTTATGTTAAGTTTGTGCCTATTGCCATAAAGAAGTAGCAGAGTATATGTAGCAAAAAGTTAATGAATCAGACTCAGTATTTTCAACATGAAGTATAGACTTGTGTGTGAAGAACCACTAAAATTTCAAGCAATGAAATTTTAGAGGTGTTTCAAACAATTATTTACACAGGGAATAATAGATTTAACCAAGCTTCAAACTTAATTACCTCGTGTTTGAGTAACACGCTGCGCCTTCTGTTGATTAGGTCACTGTATCTCGGGGATGTGTAATTCTGATGCCCTTTCGTTTTCTTATCCTCAATCAATATAAGTTTATTCGTGAATTGTTTTCGAGAAATGATACTTATAAAAAGCTAAATGTTGTGGTTATTTATACGCGTCAAGAATTTCTTTTATGGTTAATAATTTAATTTCTAACCAAATGTTGTATGGAAGTCAGATTGCCCTTATGATGAAAATTATAGTAACAAAATGAAATGACTTGATACTTATCCATGATTTGTAGATAAGTAACAACCTTAGTTGCTCGGTCTCTTCACTTTTGGTGCCGCACCCTTGTCGACACAATGTGGAGTGGGTGTGGGACCCATACCTAACCTGGTCAACTAATTTTTAGTGCTTTGACCAAATTCGAGGAAGGAATTCTGGACTGATTCAATGAATTTTATAATCAAAATAAACACTAATGTGAATTCTCCACTTACATTAACTAAAATAAATCTTACATTTAACTCGAAAAAGAAAATGTATTAATATGCTTATTGAAATTTACTGAGTTATAGTTTTATATAGGCTTGATACACAGTTTTCTCCCTGAGTACCGTCTTGGAGTTCTTTATTCAGCATTCAGTTTACTCTTACAAGTGCTATACCTCCCTGGAAAAATTAAGCACTAACAAAAAATATTTCCTTTTTTACAATTTTGGTCTTTGCAGAAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAGGTATCTGAGTATATCCCTTTCCTTGTATAATATTGTATTGGTTACACTGACATTGGAGCTATCTTGTTTGATGACTTGTCGGTGATCATTTTAAGCTATGTGTAAGCACATAAAGACTAGAATGAAAAATCTTCTTATAGTAGCTTGCTAGTGTTATTGTTAATATTTATATTTTTGCTTCTAGTAGCTGCCATTCTCATAAAGTTGATTAACCGAATAAAACAGAACATGTCTTCATCACAAGGAGAATCACAAACCAAATTATCCGAGCTGTCTGCTGGAAAATCTTGTTTTTAACTTTAAAGCTTGATATCCTCAGCCAGTAAAGAAGTTGATAAAGGGAGAAGGTTAGAGGGATGGGTCCATTATCAACCGAGTTATGAACCGAAAAAAAATGAAATTAGTGAATTCAACTTGTATAAGTTTAAGGCTTATATGTTGTTGTTTACTACTTTACTTTCACTGGACACTCTGAAGATGGTGTTTGACCAAACTTGTTGGAGAAGAAAAACTGTTTTTGAGTAGAAGCAAAAGCTATTTTTGAGAAAATAAAAAAATATGCTCTCGATTTTTGAATAGCACTTCTAAGAAAATATATGTGGAAACACTTTGTGATAGCTTGACCAGATACTAATTGCTGCTCAAGTATTTTTTTAGATCGGTTAGCATAACACAAATTGTTTCTCGTCAAAAGTACTTTTTTGTAAGAACACTTCCCAAAATTAGCTGATTTTAGAAGCTTGGCCAAATTGGCTATTATAAGCATACTAATTATTCTATATTCACTTTTCTTATGCGTCACCTGTTGGTTCACTCGTTAACAATGTTATGCTATTTCACTGTAACCAACCTCAGGTTTTTTTATATTTTTCTTAGGCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTTGTATGTTTCTAATAGTGCACTTTATAATACGTTTTTAACCTTTATGTGAGCTAATCTTTAAGAGAATGCCACATAAATATTCATTTTTGGTGGTTTGTGTTTCCAGAGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAGGTATGTTCTTTTCTTGTTTTATTTTGGTGTCATCTAACTGAAGAGATCACTTCTGATCGAATGGATGTACTAATTCGACTATTCCAGAAGTTAAGATGCAATCTGGGAACCAATCTTAGAAAAATGACAAAAATGGTCCCTTTATGTTTAAGTTTAGGTTCAATATAGTCCCTTGAAACAGTTTTGCTCTTTTTAGTTTTGCCACTTTTAGTCCCCATCTAATATTTGTGGAGCTTTGTTGGTTAGATTTGATGGTATGAAAAAATGGACATTAGTGGGAACTCACGTTTAATGAAACAATTTCTTAGTTTCTGCTATTTGATTTATTTATTTCTAGAGTCTGCTACAACATTTTGAGGTAATTTCTGATATACTTTTTATTGTCTAGTGCAATTCTCAGTGTTGCGTGAATTTGATTAGACTTTCTTGATGTTTATGATTTAAAAAAATACTTCTACTGTTTCCGTCAAATCTATTGAACATTAATATTTGACAGGGACTAAAGTATTTAACTTTTGGCAAATTTAAATTACCAAAACTGTCCAATGCAACTTAATGACTATGAACCTACCCTCAAACAGAAGGGAACATTTTTGTTATTTTCTCGCCAATTTACTTGGCAACTTAAGTGTTGGGTCTGCACACAATTGAACAACCTATGTTCTAGACGTAGAATGCTCAGCCTTGGCCTAGTAGTTCTCGTGTCATTTTTGTCAAAACCTTCGATTACTAAGGCACAGTTGCTGTAGACAGACCTTGATAAGTAGAAAATGTGGAGAAATTCCATTTCGATACACTTTATGGGAACTTATAAATATTTACATCATTTGCAGGTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTGGTAAGAACCTCAAACTTGTTCCGTTTTACGTGACACTCTCTCCTTTTTATTCTGTTTTATATTTAGAAACAATACGACTTAAAACTTTCACCCTTCATGACATGATTTTAATACCACAAAAACGTCATGACATGACTGACATGCTTAAGATCACAAATTCCAAAAGTCTTTCTTATTTCCTTTAACATCGTCTCCTAAACTCTGTCCTATGTCAAACCCTTTCACTTAAGGGGCTTAACGAAGGTTCTCTATCTTCCAAAAGTCTTGGTTGACAGAGTTACTTGATACCTATATTGCATGAACTCTTCAATAATGTCGATGAGTACCTATCACGAGCGTGCAACACCATTTTAGGAGAGTTAGAGCAACATAGTAAGGTACTTGTCTTAATGGGAAGTAGCAGGTACCACAACAAGCTTGACTCGAGCACCACAATTATAAGAAAAAACAACGATTCACTATGTATACCCTAATGTGCCACGAGCCTCCGACCTAACAATTGGACGTAAAGGCACTTCATCGACTGAGTAATCCTCATTCGTGAAGGATTTCATGTAGGATCATATTTTCCGATATTTACTAGTACTCGTATCTTCTTGTTATTTTGTTGTCGTTATTTTTTCAGGCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATTTTTATTA-TTATTGTAATTTATTGGTAAGATTA</genome_strand>
        <mrna_strand>TTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT..........................................................................................................AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGANAAGTGTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGT-AAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATTTTTATTATTTATTGTAATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295858" ref_strand="+" ref_description="SGN-E295858 [cLET-27-C21]">
      <seq>ttgtggtgaaaaaatggcgtctacaagtgctttcacagctgggatttcaaatcttcatagcttcaaaaaaccgtgtcctaatgcaaatcaagttggtatgtggactttatcaagacctggttgtcgaaaggttttagataatcccagacctctgcaaatatgttctctgtttggaggaaaaaaggacaataatgagcagaacaacgatgctccttcaaaggcaggtctttttggcaacatgcaaaacttatacgagacagtgaagaaggcgcaaaatgtggttcaagttgaggcagtgcgagtacaaaaagagcttgctttagcagagtttgatggatactgtgaaggtgaactaatcaaggtaacactgtctggaaatcagcagccgatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcatacaaggatgcgcatcagaaaagtgtactggcaatgaaggaaagaatgagtgatcttgctcagagtttgggaatgccagcaggccttggtgaaggattcaaacagtaaaaaaaattatcttcttgagtttcaattttgtaagctagcagacactaagtttatttttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76452" stop="83479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76752" g_stop="76816" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79476" g_stop="79630" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="220" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80507" g_stop="80607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="321" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80714" g_stop="80753" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="361" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82357" g_stop="82413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="490" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83039" g_stop="83179" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="630" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E295858" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76752" e_stop="76816"/>
          <exon e_start="79476" e_stop="79630"/>
          <exon e_start="80507" e_stop="80607"/>
          <exon e_start="80714" e_stop="80753"/>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82413"/>
          <exon e_start="83039" e_stop="83179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCAGTAAGCACAATTTCTCCTCAGTATCCTTATGTAAACACTTTTCCACTTTAGTTAACATTTTTTGGGGATTTTTTTAGTTTAGAGAACTATTAGTTTGCCCTAAAAGAAAATATATTATTTTGTATTGGAAAGAATGTCTTGGATTTATATAGTCAATTAAACTAATATGGGACTGTGGTGAATTATTTTGAGAACAAATTGGCAATTTAATTAGTAAGTCCAATTTATCTTGCTTGGTTCAGATATTTAGAAAATGATATGAATAAGCTTAAATGAAGAAGTGGGGTTCATATAAACGACCCTAACTTGTTTGGGGCTAAGGCATTGTTGTTGTTATGGATTATGTTGGTGTGGAGTTCTTAATTTCTAATGGGGTTGTGTTGATAGTATACTAAATGCCATAAAAAATGAAGAGAGCCATTCGGCTGAAGCTGTTAGATTTCTTGATATGAAGTTAGCAACTTTCTTTGTTGAGAAGGTCTAATTTTGGATGGTAATCACAACAAATCCAATTTGTTTGAGGCTAAGGCATTGTTGTTGTTGTTGTTGGTCATGGTGGTGGTTACAATTCTTGATTGCTAATGGGGTTGTGTTAGTTTAGAAAATGCCATAAATATGAATATGGCCATTTGGTCGAAGCTTTAGCTTTCTTGATATTAAGTTAGCAACCTTCTTTGTTGAAAAAGTCTAATTTTGATGGTAATCACAAAATTTTACGACCCTTGAAGGAAGTTCTATCCAGCTTGTTTGGGGCTAAGACGTTGTTGTTACTACTTATGTTGGTTGGAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTTTATCAAAATGCCTTAAAAAACAAACATAGCCATTCATCGAAGCTATTAGCTTTCTTGTGTAATGCTAGGAACTTTCTTTGTTTAAAATCGCAATTTTGATGGCAATCACAAAATTTCCCAACCTTGGAAGGAAATTCTATCCAAGTTGCTTGGGACTAAGGCATTATTGTCATTATGGCTTATGTTGGTGTAGAGTTCTTAATGGCTAATGGGGTTGTGTTGAAAGCTTACAAAATGCCCTAAAGATGAATATAACCATTCAGTCGAAGCTATTAGCTTTCTCGATATAAAGTTAGCAACTTTCTTTGTTGAAAAATGCTAATTTTGATGATAATCACAAAATTTTCCAACCCTTGGATTTGTAAGTTATAGACTTATATCCAACTTGTTTGGGGCTAAGATGTTGTTGTTATGGCTTATGTTGGTGTAGAGTTCTTGATTGCTAATGGGTTTGTGTTGATAGTATACCAAATGTCCCAAAAAAATGAAGAGAGACATTCGGTTGAAGCTATTAACTTTATTGATATAAAGTTAGCAACTTTATTTTGTTGAAAAATTCTAGTTTCGATGATAATCGCAAGTTCTTCTAACCCTTGGAAGTTCTATCCATTATCCAACTTGTTTGGGGAGTCTGGGCTAAGGCATTGTTGGTGTTATGGCTTATGTTCGTGTATAGTGTATAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTACAAAATACCCTAAAAACCCAAGAGAGACATTCGGTCGAAGCTTTTAGCTTCTTGATATAAAGGTAACAATTTATTTTTTTGGATTAGTCTGATTTCGATGTTAAGCACAAAAAATTCAAACCCTTGTAAGTTCTATATACACATACACAAACAAAAATAAAAGAAAATCCCACATATATGTTTATGTTAAGTTTGTGCCTATTGCCATAAAGAAGTAGCAGAGTATATGTAGCAAAAAGTTAATGAATCAGACTCAGTATTTTCAACATGAAGTATAGACTTGTGTGTGAAGAACCACTAAAATTTCAAGCAATGAAATTTTAGAGGTGTTTCAAACAATTATTTACACAGGGAATAATAGATTTAACCAAGCTTCAAACTTAATTACCTCGTGTTTGAGTAACACGCTGCGCCTTCTGTTGATTAGGTCACTGTATCTCGGGGATGTGTAATTCTGATGCCCTTTCGTTTTCTTATCCTCAATCAATATAAGTTTATTCGTGAATTGTTTTCGAGAAATGATACTTATAAAAAGCTAAATGTTGTGGTTATTTATACGCGTCAAGAATTTCTTTTATGGTTAATAATTTAATTTCTAACCAAATGTTGTATGGAAGTCAGATTGCCCTTATGATGAAAATTATAGTAACAAAATGAAATGACTTGATACTTATCCATGATTTGTAGATAAGTAACAACCTTAGTTGCTCGGTCTCTTCACTTTTGGTGCCGCACCCTTGTCGACACAATGTGGAGTGGGTGTGGGACCCATACCTAACCTGGTCAACTAATTTTTAGTGCTTTGACCAAATTCGAGGAAGGAATTCTGGACTGATTCAATGAATTTTATAATCAAAATAAACACTAATGTGAATTCTCCACTTACATTAACTAAAATAAATCTTACATTTAACTCGAAAAAGAAAATGTATTAATATGCTTATTGAAATTTACTGAGTTATAGTTTTATATAGGCTTGATACACAGTTTTCTCCCTGAGTACCGTCTTGGAGTTCTTTATTCAGCATTCAGTTTACTCTTACAAGTGCTATACCTCCCTGGAAAAATTAAGCACTAACAAAAAATATTTCCTTTTTTACAATTTTGGTCTTTGCAGAAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAGGTATCTGAGTATATCCCTTTCCTTGTATAATATTGTATTGGTTACACTGACATTGGAGCTATCTTGTTTGATGACTTGTCGGTGATCATTTTAAGCTATGTGTAAGCACATAAAGACTAGAATGAAAAATCTTCTTATAGTAGCTTGCTAGTGTTATTGTTAATATTTATATTTTTGCTTCTAGTAGCTGCCATTCTCATAAAGTTGATTAACCGAATAAAACAGAACATGTCTTCATCACAAGGAGAATCACAAACCAAATTATCCGAGCTGTCTGCTGGAAAATCTTGTTTTTAACTTTAAAGCTTGATATCCTCAGCCAGTAAAGAAGTTGATAAAGGGAGAAGGTTAGAGGGATGGGTCCATTATCAACCGAGTTATGAACCGAAAAAAAATGAAATTAGTGAATTCAACTTGTATAAGTTTAAGGCTTATATGTTGTTGTTTACTACTTTACTTTCACTGGACACTCTGAAGATGGTGTTTGACCAAACTTGTTGGAGAAGAAAAACTGTTTTTGAGTAGAAGCAAAAGCTATTTTTGAGAAAATAAAAAAATATGCTCTCGATTTTTGAATAGCACTTCTAAGAAAATATATGTGGAAACACTTTGTGATAGCTTGACCAGATACTAATTGCTGCTCAAGTATTTTTTTAGATCGGTTAGCATAACACAAATTGTTTCTCGTCAAAAGTACTTTTTTGTAAGAACACTTCCCAAAATTAGCTGATTTTAGAAGCTTGGCCAAATTGGCTATTATAAGCATACTAATTATTCTATATTCACTTTTCTTATGCGTCACCTGTTGGTTCACTCGTTAACAATGTTATGCTATTTCACTGTAACCAACCTCAGGTTTTTTTATATTTTTCTTAGGCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTTGTATGTTTCTAATAGTGCACTTTATAATACGTTTTTAACCTTTATGTGAGCTAATCTTTAAGAGAATGCCACATAAATATTCATTTTTGGTGGTTTGTGTTTCCAGAGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAGGTATGTTCTTTTCTTGTTTTATTTTGGTGTCATCTAACTGAAGAGATCACTTCTGATCGAATGGATGTACTAATTCGACTATTCCAGAAGTTAAGATGCAATCTGGGAACCAATCTTAGAAAAATGACAAAAATGGTCCCTTTATGTTTAAGTTTAGGTTCAATATAGTCCCTTGAAACAGTTTTGCTCTTTTTAGTTTTGCCACTTTTAGTCCCCATCTAATATTTGTGGAGCTTTGTTGGTTAGATTTGATGGTATGAAAAAATGGACATTAGTGGGAACTCACGTTTAATGAAACAATTTCTTAGTTTCTGCTATTTGATTTATTTATTTCTAGAGTCTGCTACAACATTTTGAGGTAATTTCTGATATACTTTTTATTGTCTAGTGCAATTCTCAGTGTTGCGTGAATTTGATTAGACTTTCTTGATGTTTATGATTTAAAAAAATACTTCTACTGTTTCCGTCAAATCTATTGAACATTAATATTTGACAGGGACTAAAGTATTTAACTTTTGGCAAATTTAAATTACCAAAACTGTCCAATGCAACTTAATGACTATGAACCTACCCTCAAACAGAAGGGAACATTTTTGTTATTTTCTCGCCAATTTACTTGGCAACTTAAGTGTTGGGTCTGCACACAATTGAACAACCTATGTTCTAGACGTAGAATGCTCAGCCTTGGCCTAGTAGTTCTCGTGTCATTTTTGTCAAAACCTTCGATTACTAAGGCACAGTTGCTGTAGACAGACCTTGATAAGTAGAAAATGTGGAGAAATTCCATTTCGATACACTTTATGGGAACTTATAAATATTTACATCATTTGCAGGTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTGGTAAGAACCTCAAACTTGTTCCGTTTTACGTGACACTCTCTCCTTTTTATTCTGTTTTATATTTAGAAACAATACGACTTAAAACTTTCACCCTTCATGACATGATTTTAATACCACAAAAACGTCATGACATGACTGACATGCTTAAGATCACAAATTCCAAAAGTCTTTCTTATTTCCTTTAACATCGTCTCCTAAACTCTGTCCTATGTCAAACCCTTTCACTTAAGGGGCTTAACGAAGGTTCTCTATCTTCCAAAAGTCTTGGTTGACAGAGTTACTTGATACCTATATTGCATGAACTCTTCAATAATGTCGATGAGTACCTATCACGAGCGTGCAACACCATTTTAGGAGAGTTAGAGCAACATAGTAAGGTACTTGTCTTAATGGGAAGTAGCAGGTACCACAACAAGCTTGACTCGAGCACCACAATTATAAGAAAAAACAACGATTCACTATGTATACCCTAATGTGCCACGAGCCTCCGACCTAACAATTGGACGTAAAGGCACTTCATCGACTGAGTAATCCTCATTCGTGAAGGATTTCATGTAGGATCATATTTTCCGATATTTACTAGTACTCGTATCTTCTTGTTATTTTGTTGTCGTTATTTTTTCAGGCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCAT</genome_strand>
        <mrna_strand>TTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT..........................................................................................................AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGT-AAAAAAAATTATCTTCTTGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297709" ref_strand="+" ref_description="SGN-E297709 [cLET-28-C24]">
      <seq>ttgtggtgaaaaaatggcgtctacaagtgctttcacagctgggatttcaaatcttcatagcttcaaaaaaccgtgtcctaatgcaaatcaagttggtatgtggactttatcaagacctgggtgtcgaaaggttttagataatcccagacctctgcaaatatgtgctctgtttggaggaaaaaaggacaataatgagcataacaacgatgctccttcaaaggcaggtctttttggcaacatgcaaaacttatacgagacagtgaagaaggcgcaaaatgtggttcaagttgctgcagtgcgagtacaaaaagagcttgctttagcagagtttgatggatactgtgaaggtgaactaatcaaggtgacactgtctggaaatcagcagccgatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76452" stop="82686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76752" g_stop="76816" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79476" g_stop="79630" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="220" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80507" g_stop="80607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="321" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106">
            <donor d_prob="0.906" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80714" g_stop="80753" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="361" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82357" g_stop="82386" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="463" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E297709" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76752" e_stop="76816"/>
          <exon e_start="79476" e_stop="79630"/>
          <exon e_start="80507" e_stop="80607"/>
          <exon e_start="80714" e_stop="80753"/>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCAGTAAGCACAATTTCTCCTCAGTATCCTTATGTAAACACTTTTCCACTTTAGTTAACATTTTTTGGGGATTTTTTTAGTTTAGAGAACTATTAGTTTGCCCTAAAAGAAAATATATTATTTTGTATTGGAAAGAATGTCTTGGATTTATATAGTCAATTAAACTAATATGGGACTGTGGTGAATTATTTTGAGAACAAATTGGCAATTTAATTAGTAAGTCCAATTTATCTTGCTTGGTTCAGATATTTAGAAAATGATATGAATAAGCTTAAATGAAGAAGTGGGGTTCATATAAACGACCCTAACTTGTTTGGGGCTAAGGCATTGTTGTTGTTATGGATTATGTTGGTGTGGAGTTCTTAATTTCTAATGGGGTTGTGTTGATAGTATACTAAATGCCATAAAAAATGAAGAGAGCCATTCGGCTGAAGCTGTTAGATTTCTTGATATGAAGTTAGCAACTTTCTTTGTTGAGAAGGTCTAATTTTGGATGGTAATCACAACAAATCCAATTTGTTTGAGGCTAAGGCATTGTTGTTGTTGTTGTTGGTCATGGTGGTGGTTACAATTCTTGATTGCTAATGGGGTTGTGTTAGTTTAGAAAATGCCATAAATATGAATATGGCCATTTGGTCGAAGCTTTAGCTTTCTTGATATTAAGTTAGCAACCTTCTTTGTTGAAAAAGTCTAATTTTGATGGTAATCACAAAATTTTACGACCCTTGAAGGAAGTTCTATCCAGCTTGTTTGGGGCTAAGACGTTGTTGTTACTACTTATGTTGGTTGGAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTTTATCAAAATGCCTTAAAAAACAAACATAGCCATTCATCGAAGCTATTAGCTTTCTTGTGTAATGCTAGGAACTTTCTTTGTTTAAAATCGCAATTTTGATGGCAATCACAAAATTTCCCAACCTTGGAAGGAAATTCTATCCAAGTTGCTTGGGACTAAGGCATTATTGTCATTATGGCTTATGTTGGTGTAGAGTTCTTAATGGCTAATGGGGTTGTGTTGAAAGCTTACAAAATGCCCTAAAGATGAATATAACCATTCAGTCGAAGCTATTAGCTTTCTCGATATAAAGTTAGCAACTTTCTTTGTTGAAAAATGCTAATTTTGATGATAATCACAAAATTTTCCAACCCTTGGATTTGTAAGTTATAGACTTATATCCAACTTGTTTGGGGCTAAGATGTTGTTGTTATGGCTTATGTTGGTGTAGAGTTCTTGATTGCTAATGGGTTTGTGTTGATAGTATACCAAATGTCCCAAAAAAATGAAGAGAGACATTCGGTTGAAGCTATTAACTTTATTGATATAAAGTTAGCAACTTTATTTTGTTGAAAAATTCTAGTTTCGATGATAATCGCAAGTTCTTCTAACCCTTGGAAGTTCTATCCATTATCCAACTTGTTTGGGGAGTCTGGGCTAAGGCATTGTTGGTGTTATGGCTTATGTTCGTGTATAGTGTATAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTACAAAATACCCTAAAAACCCAAGAGAGACATTCGGTCGAAGCTTTTAGCTTCTTGATATAAAGGTAACAATTTATTTTTTTGGATTAGTCTGATTTCGATGTTAAGCACAAAAAATTCAAACCCTTGTAAGTTCTATATACACATACACAAACAAAAATAAAAGAAAATCCCACATATATGTTTATGTTAAGTTTGTGCCTATTGCCATAAAGAAGTAGCAGAGTATATGTAGCAAAAAGTTAATGAATCAGACTCAGTATTTTCAACATGAAGTATAGACTTGTGTGTGAAGAACCACTAAAATTTCAAGCAATGAAATTTTAGAGGTGTTTCAAACAATTATTTACACAGGGAATAATAGATTTAACCAAGCTTCAAACTTAATTACCTCGTGTTTGAGTAACACGCTGCGCCTTCTGTTGATTAGGTCACTGTATCTCGGGGATGTGTAATTCTGATGCCCTTTCGTTTTCTTATCCTCAATCAATATAAGTTTATTCGTGAATTGTTTTCGAGAAATGATACTTATAAAAAGCTAAATGTTGTGGTTATTTATACGCGTCAAGAATTTCTTTTATGGTTAATAATTTAATTTCTAACCAAATGTTGTATGGAAGTCAGATTGCCCTTATGATGAAAATTATAGTAACAAAATGAAATGACTTGATACTTATCCATGATTTGTAGATAAGTAACAACCTTAGTTGCTCGGTCTCTTCACTTTTGGTGCCGCACCCTTGTCGACACAATGTGGAGTGGGTGTGGGACCCATACCTAACCTGGTCAACTAATTTTTAGTGCTTTGACCAAATTCGAGGAAGGAATTCTGGACTGATTCAATGAATTTTATAATCAAAATAAACACTAATGTGAATTCTCCACTTACATTAACTAAAATAAATCTTACATTTAACTCGAAAAAGAAAATGTATTAATATGCTTATTGAAATTTACTGAGTTATAGTTTTATATAGGCTTGATACACAGTTTTCTCCCTGAGTACCGTCTTGGAGTTCTTTATTCAGCATTCAGTTTACTCTTACAAGTGCTATACCTCCCTGGAAAAATTAAGCACTAACAAAAAATATTTCCTTTTTTACAATTTTGGTCTTTGCAGAAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAGGTATCTGAGTATATCCCTTTCCTTGTATAATATTGTATTGGTTACACTGACATTGGAGCTATCTTGTTTGATGACTTGTCGGTGATCATTTTAAGCTATGTGTAAGCACATAAAGACTAGAATGAAAAATCTTCTTATAGTAGCTTGCTAGTGTTATTGTTAATATTTATATTTTTGCTTCTAGTAGCTGCCATTCTCATAAAGTTGATTAACCGAATAAAACAGAACATGTCTTCATCACAAGGAGAATCACAAACCAAATTATCCGAGCTGTCTGCTGGAAAATCTTGTTTTTAACTTTAAAGCTTGATATCCTCAGCCAGTAAAGAAGTTGATAAAGGGAGAAGGTTAGAGGGATGGGTCCATTATCAACCGAGTTATGAACCGAAAAAAAATGAAATTAGTGAATTCAACTTGTATAAGTTTAAGGCTTATATGTTGTTGTTTACTACTTTACTTTCACTGGACACTCTGAAGATGGTGTTTGACCAAACTTGTTGGAGAAGAAAAACTGTTTTTGAGTAGAAGCAAAAGCTATTTTTGAGAAAATAAAAAAATATGCTCTCGATTTTTGAATAGCACTTCTAAGAAAATATATGTGGAAACACTTTGTGATAGCTTGACCAGATACTAATTGCTGCTCAAGTATTTTTTTAGATCGGTTAGCATAACACAAATTGTTTCTCGTCAAAAGTACTTTTTTGTAAGAACACTTCCCAAAATTAGCTGATTTTAGAAGCTTGGCCAAATTGGCTATTATAAGCATACTAATTATTCTATATTCACTTTTCTTATGCGTCACCTGTTGGTTCACTCGTTAACAATGTTATGCTATTTCACTGTAACCAACCTCAGGTTTTTTTATATTTTTCTTAGGCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTTGTATGTTTCTAATAGTGCACTTTATAATACGTTTTTAACCTTTATGTGAGCTAATCTTTAAGAGAATGCCACATAAATATTCATTTTTGGTGGTTTGTGTTTCCAGAGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAGGTATGTTCTTTTCTTGTTTTATTTTGGTGTCATCTAACTGAAGAGATCACTTCTGATCGAATGGATGTACTAATTCGACTATTCCAGAAGTTAAGATGCAATCTGGGAACCAATCTTAGAAAAATGACAAAAATGGTCCCTTTATGTTTAAGTTTAGGTTCAATATAGTCCCTTGAAACAGTTTTGCTCTTTTTAGTTTTGCCACTTTTAGTCCCCATCTAATATTTGTGGAGCTTTGTTGGTTAGATTTGATGGTATGAAAAAATGGACATTAGTGGGAACTCACGTTTAATGAAACAATTTCTTAGTTTCTGCTATTTGATTTATTTATTTCTAGAGTCTGCTACAACATTTTGAGGTAATTTCTGATATACTTTTTATTGTCTAGTGCAATTCTCAGTGTTGCGTGAATTTGATTAGACTTTCTTGATGTTTATGATTTAAAAAAATACTTCTACTGTTTCCGTCAAATCTATTGAACATTAATATTTGACAGGGACTAAAGTATTTAACTTTTGGCAAATTTAAATTACCAAAACTGTCCAATGCAACTTAATGACTATGAACCTACCCTCAAACAGAAGGGAACATTTTTGTTATTTTCTCGCCAATTTACTTGGCAACTTAAGTGTTGGGTCTGCACACAATTGAACAACCTATGTTCTAGACGTAGAATGCTCAGCCTTGGCCTAGTAGTTCTCGTGTCATTTTTGTCAAAACCTTCGATTACTAAGGCACAGTTGCTGTAGACAGACCTTGATAAGTAGAAAATGTGGAGAAATTCCATTTCGATACACTTTATGGGAACTTATAAATATTTACATCATTTGCAGGTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATAC</genome_strand>
        <mrna_strand>TTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGGTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTGCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCATAACAACGATGCTCCTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGCTGCAGTGCGAGTACAAAAAGAGCTTGCTTT..........................................................................................................AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622329" ref_strand="+" ref_description="SGN-E622329 [72695]">
      <seq>ttgaaaaaatggcgtctacaagtgctttcacagctgggatttcaaatcttcatagcttcaacaaaccgtgtcctaatgcaaatcaagttggtatgtggactttatcaagatctggctgtcgaaaggttttagataatcccagacctctgcaaatatgttctctgtttggagggaaaaaggacaataatgagcagaacaatgatgctccttcaaaggcaggtctttttggcaacatgcaaaacttatacgagacggtgaagaaggcacaaaatgtagttcaagttgaggcagtgcgagtacaaaaagagcttgctttagcagagtttgatggatactgtgaaggtgaactaatcaaggtaacactgtctgggaatcagcaaccaatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcttacaaggatgcacatcagaaaagtgtactggcaatgaaggaaagaatgagtgatcttgctcagagcttgggaatgccagcaggccttggtgaaggattcaaacagtaaaaattgtcttcattgagtttcaattttgtacactagcagacactaagtttatttgcattaaaattatgaatacaatttttattattattgtaatttattggtaagattatgcactctaaaaactttggattgaaacgtttaaattcttttattttatagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76458" stop="83581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76757" g_stop="76816" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79476" g_stop="79630" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="215" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80507" g_stop="80607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="316" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80714" g_stop="80753" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="356" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="428" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82357" g_stop="82413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="485" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83039" g_stop="83281" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="724" r_length="239" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E622329" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76757" e_stop="76816"/>
          <exon e_start="79476" e_stop="79630"/>
          <exon e_start="80507" e_stop="80607"/>
          <exon e_start="80714" e_stop="80753"/>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82413"/>
          <exon e_start="83039" e_stop="83281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCAGTAAGCACAATTTCTCCTCAGTATCCTTATGTAAACACTTTTCCACTTTAGTTAACATTTTTTGGGGATTTTTTTAGTTTAGAGAACTATTAGTTTGCCCTAAAAGAAAATATATTATTTTGTATTGGAAAGAATGTCTTGGATTTATATAGTCAATTAAACTAATATGGGACTGTGGTGAATTATTTTGAGAACAAATTGGCAATTTAATTAGTAAGTCCAATTTATCTTGCTTGGTTCAGATATTTAGAAAATGATATGAATAAGCTTAAATGAAGAAGTGGGGTTCATATAAACGACCCTAACTTGTTTGGGGCTAAGGCATTGTTGTTGTTATGGATTATGTTGGTGTGGAGTTCTTAATTTCTAATGGGGTTGTGTTGATAGTATACTAAATGCCATAAAAAATGAAGAGAGCCATTCGGCTGAAGCTGTTAGATTTCTTGATATGAAGTTAGCAACTTTCTTTGTTGAGAAGGTCTAATTTTGGATGGTAATCACAACAAATCCAATTTGTTTGAGGCTAAGGCATTGTTGTTGTTGTTGTTGGTCATGGTGGTGGTTACAATTCTTGATTGCTAATGGGGTTGTGTTAGTTTAGAAAATGCCATAAATATGAATATGGCCATTTGGTCGAAGCTTTAGCTTTCTTGATATTAAGTTAGCAACCTTCTTTGTTGAAAAAGTCTAATTTTGATGGTAATCACAAAATTTTACGACCCTTGAAGGAAGTTCTATCCAGCTTGTTTGGGGCTAAGACGTTGTTGTTACTACTTATGTTGGTTGGAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTTTATCAAAATGCCTTAAAAAACAAACATAGCCATTCATCGAAGCTATTAGCTTTCTTGTGTAATGCTAGGAACTTTCTTTGTTTAAAATCGCAATTTTGATGGCAATCACAAAATTTCCCAACCTTGGAAGGAAATTCTATCCAAGTTGCTTGGGACTAAGGCATTATTGTCATTATGGCTTATGTTGGTGTAGAGTTCTTAATGGCTAATGGGGTTGTGTTGAAAGCTTACAAAATGCCCTAAAGATGAATATAACCATTCAGTCGAAGCTATTAGCTTTCTCGATATAAAGTTAGCAACTTTCTTTGTTGAAAAATGCTAATTTTGATGATAATCACAAAATTTTCCAACCCTTGGATTTGTAAGTTATAGACTTATATCCAACTTGTTTGGGGCTAAGATGTTGTTGTTATGGCTTATGTTGGTGTAGAGTTCTTGATTGCTAATGGGTTTGTGTTGATAGTATACCAAATGTCCCAAAAAAATGAAGAGAGACATTCGGTTGAAGCTATTAACTTTATTGATATAAAGTTAGCAACTTTATTTTGTTGAAAAATTCTAGTTTCGATGATAATCGCAAGTTCTTCTAACCCTTGGAAGTTCTATCCATTATCCAACTTGTTTGGGGAGTCTGGGCTAAGGCATTGTTGGTGTTATGGCTTATGTTCGTGTATAGTGTATAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTACAAAATACCCTAAAAACCCAAGAGAGACATTCGGTCGAAGCTTTTAGCTTCTTGATATAAAGGTAACAATTTATTTTTTTGGATTAGTCTGATTTCGATGTTAAGCACAAAAAATTCAAACCCTTGTAAGTTCTATATACACATACACAAACAAAAATAAAAGAAAATCCCACATATATGTTTATGTTAAGTTTGTGCCTATTGCCATAAAGAAGTAGCAGAGTATATGTAGCAAAAAGTTAATGAATCAGACTCAGTATTTTCAACATGAAGTATAGACTTGTGTGTGAAGAACCACTAAAATTTCAAGCAATGAAATTTTAGAGGTGTTTCAAACAATTATTTACACAGGGAATAATAGATTTAACCAAGCTTCAAACTTAATTACCTCGTGTTTGAGTAACACGCTGCGCCTTCTGTTGATTAGGTCACTGTATCTCGGGGATGTGTAATTCTGATGCCCTTTCGTTTTCTTATCCTCAATCAATATAAGTTTATTCGTGAATTGTTTTCGAGAAATGATACTTATAAAAAGCTAAATGTTGTGGTTATTTATACGCGTCAAGAATTTCTTTTATGGTTAATAATTTAATTTCTAACCAAATGTTGTATGGAAGTCAGATTGCCCTTATGATGAAAATTATAGTAACAAAATGAAATGACTTGATACTTATCCATGATTTGTAGATAAGTAACAACCTTAGTTGCTCGGTCTCTTCACTTTTGGTGCCGCACCCTTGTCGACACAATGTGGAGTGGGTGTGGGACCCATACCTAACCTGGTCAACTAATTTTTAGTGCTTTGACCAAATTCGAGGAAGGAATTCTGGACTGATTCAATGAATTTTATAATCAAAATAAACACTAATGTGAATTCTCCACTTACATTAACTAAAATAAATCTTACATTTAACTCGAAAAAGAAAATGTATTAATATGCTTATTGAAATTTACTGAGTTATAGTTTTATATAGGCTTGATACACAGTTTTCTCCCTGAGTACCGTCTTGGAGTTCTTTATTCAGCATTCAGTTTACTCTTACAAGTGCTATACCTCCCTGGAAAAATTAAGCACTAACAAAAAATATTTCCTTTTTTACAATTTTGGTCTTTGCAGAAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAGGTATCTGAGTATATCCCTTTCCTTGTATAATATTGTATTGGTTACACTGACATTGGAGCTATCTTGTTTGATGACTTGTCGGTGATCATTTTAAGCTATGTGTAAGCACATAAAGACTAGAATGAAAAATCTTCTTATAGTAGCTTGCTAGTGTTATTGTTAATATTTATATTTTTGCTTCTAGTAGCTGCCATTCTCATAAAGTTGATTAACCGAATAAAACAGAACATGTCTTCATCACAAGGAGAATCACAAACCAAATTATCCGAGCTGTCTGCTGGAAAATCTTGTTTTTAACTTTAAAGCTTGATATCCTCAGCCAGTAAAGAAGTTGATAAAGGGAGAAGGTTAGAGGGATGGGTCCATTATCAACCGAGTTATGAACCGAAAAAAAATGAAATTAGTGAATTCAACTTGTATAAGTTTAAGGCTTATATGTTGTTGTTTACTACTTTACTTTCACTGGACACTCTGAAGATGGTGTTTGACCAAACTTGTTGGAGAAGAAAAACTGTTTTTGAGTAGAAGCAAAAGCTATTTTTGAGAAAATAAAAAAATATGCTCTCGATTTTTGAATAGCACTTCTAAGAAAATATATGTGGAAACACTTTGTGATAGCTTGACCAGATACTAATTGCTGCTCAAGTATTTTTTTAGATCGGTTAGCATAACACAAATTGTTTCTCGTCAAAAGTACTTTTTTGTAAGAACACTTCCCAAAATTAGCTGATTTTAGAAGCTTGGCCAAATTGGCTATTATAAGCATACTAATTATTCTATATTCACTTTTCTTATGCGTCACCTGTTGGTTCACTCGTTAACAATGTTATGCTATTTCACTGTAACCAACCTCAGGTTTTTTTATATTTTTCTTAGGCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTTGTATGTTTCTAATAGTGCACTTTATAATACGTTTTTAACCTTTATGTGAGCTAATCTTTAAGAGAATGCCACATAAATATTCATTTTTGGTGGTTTGTGTTTCCAGAGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAGGTATGTTCTTTTCTTGTTTTATTTTGGTGTCATCTAACTGAAGAGATCACTTCTGATCGAATGGATGTACTAATTCGACTATTCCAGAAGTTAAGATGCAATCTGGGAACCAATCTTAGAAAAATGACAAAAATGGTCCCTTTATGTTTAAGTTTAGGTTCAATATAGTCCCTTGAAACAGTTTTGCTCTTTTTAGTTTTGCCACTTTTAGTCCCCATCTAATATTTGTGGAGCTTTGTTGGTTAGATTTGATGGTATGAAAAAATGGACATTAGTGGGAACTCACGTTTAATGAAACAATTTCTTAGTTTCTGCTATTTGATTTATTTATTTCTAGAGTCTGCTACAACATTTTGAGGTAATTTCTGATATACTTTTTATTGTCTAGTGCAATTCTCAGTGTTGCGTGAATTTGATTAGACTTTCTTGATGTTTATGATTTAAAAAAATACTTCTACTGTTTCCGTCAAATCTATTGAACATTAATATTTGACAGGGACTAAAGTATTTAACTTTTGGCAAATTTAAATTACCAAAACTGTCCAATGCAACTTAATGACTATGAACCTACCCTCAAACAGAAGGGAACATTTTTGTTATTTTCTCGCCAATTTACTTGGCAACTTAAGTGTTGGGTCTGCACACAATTGAACAACCTATGTTCTAGACGTAGAATGCTCAGCCTTGGCCTAGTAGTTCTCGTGTCATTTTTGTCAAAACCTTCGATTACTAAGGCACAGTTGCTGTAGACAGACCTTGATAAGTAGAAAATGTGGAGAAATTCCATTTCGATACACTTTATGGGAACTTATAAATATTTACATCATTTGCAGGTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTGGTAAGAACCTCAAACTTGTTCCGTTTTACGTGACACTCTCTCCTTTTTATTCTGTTTTATATTTAGAAACAATACGACTTAAAACTTTCACCCTTCATGACATGATTTTAATACCACAAAAACGTCATGACATGACTGACATGCTTAAGATCACAAATTCCAAAAGTCTTTCTTATTTCCTTTAACATCGTCTCCTAAACTCTGTCCTATGTCAAACCCTTTCACTTAAGGGGCTTAACGAAGGTTCTCTATCTTCCAAAAGTCTTGGTTGACAGAGTTACTTGATACCTATATTGCATGAACTCTTCAATAATGTCGATGAGTACCTATCACGAGCGTGCAACACCATTTTAGGAGAGTTAGAGCAACATAGTAAGGTACTTGTCTTAATGGGAAGTAGCAGGTACCACAACAAGCTTGACTCGAGCACCACAATTATAAGAAAAAACAACGATTCACTATGTATACCCTAATGTGCCACGAGCCTCCGACCTAACAATTGGACGTAAAGGCACTTCATCGACTGAGTAATCCTCATTCGTGAAGGATTTCATGTAGGATCATATTTTCCGATATTTACTAGTACTCGTATCTTCTTGTTATTTTGTTGTCGTTATTTTTTCAGGCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCA-TGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATTTTTATTATTATTGTAATTTATTGGTAAGATTATGCACTGTAGAAACTTTGGATTGAAA-GTTTTAAATCTTCAATTTTATAGTG</genome_strand>
        <mrna_strand>TTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGATCTGGCTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGGAAAAAGGACAATAATGAGCAGAACAATGATGCTCCTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACGGTGAAGAAGGCACAAAATGTAGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT..........................................................................................................AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTGTCTGGGAATCAGCAACCAATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCTTACAAGGATGCACATCAGAAAAGTGTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGCTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGT----AAAAATTGTCTTCATTGAGTTTCAATTTTGTACACTAGCAGACACTAAGTTTA--TTTGCATTAAAATTATGAATACAATTTTTATTATTATTGTAATTTATTGGTAAGATTATGCACTCTAAAAACTTTGGATTGAAACGTTTAAATTCTTTTATTTTATAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617411" ref_strand="+" ref_description="SGN-E617411 [90889]">
      <seq>gtgaactaatcaaggtaacactgtctgggaatcagcaaccaatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcttacaaggatgcacatcagaaaagtgtactggcaatgaaggaaagaatgagtgatcttgctcagagcttgggaatgccagcaggccttggtgaaggattcaaacagtaaaaattgtcttcattgagtttcaattttgtacactagcagacactaagtttatttgcattaaaattatgaataaattttttattattattgtaatttattggtaagattatgcactctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="81285" stop="83543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="86" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82357" g_stop="82413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="143" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83039" g_stop="83242" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="342" r_length="199" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E617411" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82413"/>
          <exon e_start="83039" e_stop="83242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTGGTAAGAACCTCAAACTTGTTCCGTTTTACGTGACACTCTCTCCTTTTTATTCTGTTTTATATTTAGAAACAATACGACTTAAAACTTTCACCCTTCATGACATGATTTTAATACCACAAAAACGTCATGACATGACTGACATGCTTAAGATCACAAATTCCAAAAGTCTTTCTTATTTCCTTTAACATCGTCTCCTAAACTCTGTCCTATGTCAAACCCTTTCACTTAAGGGGCTTAACGAAGGTTCTCTATCTTCCAAAAGTCTTGGTTGACAGAGTTACTTGATACCTATATTGCATGAACTCTTCAATAATGTCGATGAGTACCTATCACGAGCGTGCAACACCATTTTAGGAGAGTTAGAGCAACATAGTAAGGTACTTGTCTTAATGGGAAGTAGCAGGTACCACAACAAGCTTGACTCGAGCACCACAATTATAAGAAAAAACAACGATTCACTATGTATACCCTAATGTGCCACGAGCCTCCGACCTAACAATTGGACGTAAAGGCACTTCATCGACTGAGTAATCCTCATTCGTGAAGGATTTCATGTAGGATCATATTTTCCGATATTTACTAGTACTCGTATCTTCTTGTTATTTTGTTGTCGTTATTTTTTCAGGCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCA-TGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATTTTTATTATTATTGTAATTTATTGGTAAGATTATGCACTGTAGAA</genome_strand>
        <mrna_strand>GTAACACTGTCTGGGAATCAGCAACCAATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCTTACAAGGATGCACATCAGAAAAGTGTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGCTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGT----AAAAATTGTCTTCATTGAGTTTCAATTTTGTACACTAGCAGACACTAAGTTTA--TTTGCATTAAAATTATGAATAAATTTTTTATTATTATTGTAATTTATTGGTAAGATTATGCACTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290660" ref_strand="+" ref_description="SGN-E290660 [cLET-10-G1]">
      <seq>gaggccgaggcacgtgctgaggaaatgaagaaatcgaagcaggtgacccagcctgtaaaccataatcttggtaagaagcaaggacaagtgcataaaggcattatggatggaggcaatcaaaaaaagagaggtgctgaatcaggaaatgatagtgtagatggcgataaagtaaatagtcgttccatggaaaatggccatgggcgttctaaaattagtaaggaaaatggagtattgctggctaacgggaaagacaacagatgttctgattctggggcttttgatgtaaataatctacagaagcttagggctaaaggtggaaagaaaaccgataccattgtaaaggattacaaggcagagcctactaaaaaggcaaagaagaacatagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85824" stop="86881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86124" g_stop="86581" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E290660" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86124" e_stop="86581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATAC</genome_strand>
        <mrna_strand>GAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGACCCAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCATAAAGGCATTATGGATGGAGGCAATCAAAAAAAGAGAGGTGCTGAATCAGGAAATGATAGTGTAGATGGCGATAAAGTAAATAGTCGTTCCATGGAAAATGGCCATGGGCGTTCTAAAATTAGTAAGGAAAATGGAGTATTGCTGGCTAACGGGAAAGACAACAGATGTTCTGATTCTGGGGCTTTTGATGTAAATAATCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTACAAGGCAGAGCCTACTAAAAAGGCAAAGAAGAACATAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287875" ref_strand="+" ref_description="SGN-E287875 [cLES-19-B3]">
      <seq>gaggcacgtgctgaggaaatgaagaaatcgaagcaggtgagcaagcctgtaaaccataatcttggtaagaagcaaggacaagtgcagaagggcattatggatggaggcaatcaaaaaaagagtggtgctgaatcaggaaatgatagtggagatggtgataaagtaaatagtcgtgccatggaaaatggcaatgggcgttctaaagttagtaagggaaatggagtagtgcaggctaacggtaaagagaacagaagttctgattctggggcttttgatgtaaataagctacagaagcttatggctaaaggtggaaagaaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85830" stop="86819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86130" g_stop="86519" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E287875" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86130" e_stop="86519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGAT</genome_strand>
        <mrna_strand>GAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTATGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571708" ref_strand="+" ref_description="SGN-E571708 [30748]">
      <seq>ggtgagcaagcctgtaaaccataatcttggtaagaagcaaggacaagtgcagaagggcattatggatggaggcaatcaaaaaaagagtggtgccgaatcaggaaatgacagtggagatggtgataaagtaaatagtcgtgccatggaaaatggcaatgggcgttctaaaggtagtaaggaaaatggagtagtgcaggctaacggtaaagagaatagaagctctgattctggggcttttgatgtaaataagctacagaagcttagggctaaaggtggaaagaaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtggaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgaaactgaggaggatgaggagccagggaaagacaacaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggctgcaagtttggagggtaaaaagcttgggtcatttacgaagaatttcttcaacagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85865" stop="87663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86165" g_stop="86731" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="652" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87363" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="747" r_length="95" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E571708" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86165" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTAC-AAGAATTTCTTCAACAGTTC</genome_strand>
        <mrna_strand>GGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCCGAATCAGGAAATGACAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGGTAGTAAGGAAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAATAGAAGCTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTGGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAAACTGAGGAGGATGAGGAGCCAGGGAAAGACAACAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCTGCAAGTTTGGAGGGTAAAAAGCTTGGGTCATTTACGAAGAATTTCTTCAACAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279705" ref_strand="+" ref_description="SGN-E279705 [cLER-5-J9]">
      <seq>taagaagcaaggacaagtgcagaagggcattatggatggaggcaatcaaaaaaagagtggtgctgaatcaggaaatgatagtggagatggtgataaagtaaatagtcctgccatggaaaatggcaatgggcgttctaaagttagtaagggaaatggagtagtgcatgctaacggtaaagagaacagaagttctgattctggggcttttgatgtaaataagctacagaagcttatggctaaaggtggaaagaaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagctgtagaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagttgtgatagtgagactgatgaggatgaagagccagggaaagacagcaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85895" stop="86989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86195" g_stop="86689" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E279705" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86195" e_stop="86689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGT</genome_strand>
        <mrna_strand>TAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCCTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCATGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTATGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGCTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTTGTGATAGTGAGACTGATGAGGATGAAGAGCCAGGGAAAGACAGCAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256932" ref_strand="+" ref_description="SGN-E256932 [cLEG-44-O23]">
      <seq>aaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtagaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgagactgaggaggatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86145" stop="86967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86445" g_stop="86667" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E256932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86445" e_stop="86667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAG</genome_strand>
        <mrna_strand>AAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324098" ref_strand="+" ref_description="SGN-E324098 [cTOC-3-D15]">
      <seq>aaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtagaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgagactgaggaggatgaagagccagggaaagacagcaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86163" stop="87660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86463" g_stop="86731" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="354" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87360" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="445" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E324098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86463" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAG</genome_strand>
        <mrna_strand>AAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690339" ref_strand="+" ref_description="SGN-E690339 [LH_Ea03E01]">
      <seq>cacttctcgtgccgaattcggcacgagaccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtaggagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagcgagactgaggaggatgaagagccagggaaagacagcaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgcgacacatttcgatccggagctgtagagcagctccatactcatgctcaaagacttcaggtccccatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86164" stop="88444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86466" g_stop="86731" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="290" r_length="266" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="375" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="471" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87800" g_stop="87952" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="624" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="732" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88243" g_stop="88254" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="744" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E690339" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86466" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTT</genome_strand>
        <mrna_strand>GAGACCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGGAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGCGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGCGACACATTTCGATCCGGAGCTGTAGAGCAGCTCCATACTCATGCTCAAAGACTTCAG....................................................................................................GTCCCCATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576145" ref_strand="+" ref_description="SGN-E576145 [59317]">
      <seq>cgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtggaagcagttcaagggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgaaactgaggaggatgaggagccagggaaagacaacaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggctgcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtcaaccaatcttgctaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgcgacacatttcgatccggagctgtagagcagctccgtactcatgctcgggagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgcaangaaacaatcaggaggctaatcgaaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86233" stop="88623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86533" g_stop="86731" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="285" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="381" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87800" g_stop="87952" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="534" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="643" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88243" g_stop="88323" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="722" r_length="79" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E576145" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86533" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAG-GTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTC-GAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGT</genome_strand>
        <mrna_strand>CGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTGGAAGCAGTTCAAGGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAAACTGAGGAGGATGAGGAGCCAGGGAAAGACAACAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCTGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCAACCAATCTTGCTAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGCGACACATTTCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGGGAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTG-CAANGAAACAAT-CAGGAGGCTAATCGAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254065" ref_strand="+" ref_description="SGN-E254065 [cLEG-34-B5]">
      <seq>aaagaggagattgtgagtagtgatagtgagactgaggaggatgaagagccagggaaagacagcaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86322" stop="88433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86622" g_stop="86731" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="195" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="291" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87800" g_stop="87952" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="444" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88035" g_stop="88133" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="543" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E254065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86622" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87952"/>
          <exon e_start="88035" e_stop="88133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGA</genome_strand>
        <mrna_strand>AAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316085" ref_strand="+" ref_description="SGN-E316085 [cTOA-23-H5]">
      <seq>ttcctgagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcgagtttggagggtaaaaagcttggctcatttacaacaatttcttcaacagttcacgcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86752" stop="88233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="93" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="189" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87800" g_stop="87933" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="323" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E316085" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAA</genome_strand>
        <mrna_strand>TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCGAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAACAATTTCTTCAACAGTTCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240011" ref_strand="+" ref_description="SGN-E240011 [cLED-29-L10]">
      <seq>tgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="86969" stop="88237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87122" g_stop="87138" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="113" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87800" g_stop="87937" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="251" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E240011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87122" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCT</genome_strand>
        <mrna_strand>TGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310998" ref_strand="+" ref_description="SGN-E310998 [cLEZ-17-K1]">
      <seq>gaggcccttgttcggattttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87512" stop="89115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87812" g_stop="87952" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="249" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="495" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88768" g_stop="88815" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="543" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E310998" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87812" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGA</genome_strand>
        <mrna_strand>GAGGCCCTTGTTCGGATTTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235560" ref_strand="+" ref_description="SGN-E235560 [cLED-11-F4]">
      <seq>ttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87567" stop="89562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87867" g_stop="87952" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="194" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="314" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="440" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="524" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89222" g_stop="89262" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="565" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E235560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87867" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCC</genome_strand>
        <mrna_strand>TTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694179" ref_strand="+" ref_description="SGN-E694179 [LH_Ea03E01](-)">
      <seq>caaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgcgacacatttcgatccggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagccggtcgaatgcaggataatgaaccactgatgcgagcactttcaaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgatgctgttgatcagttgtcaaagttcacccagaaactaggtgacctttctccctcaccaaatccaagattgattgatggaattctccttaccaagtttgataccattgatgataaggtgggagcagcattgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaatgtcaagtccatagtgaagacactactcaaatgagaacacacaatctgtttcttaccttttagtttggcctttaatgtctgtttaagaagtgttgaacactttgtatgttgctgcttcagttgtgtttgtaactttgtattctctcatctgtgatttcccagtattttgattttgaaggtgaatcgtgtgacttaattggtgtatattagttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87576" stop="89830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87876" g_stop="87952" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="185" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="305" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="431" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="515" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89222" g_stop="89525" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="820" r_length="305" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="841"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E694179" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87876" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTC-TACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGTATATTAGTTT</genome_strand>
        <mrna_strand>CAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGCGACACATTTCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCCGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCAAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGATGCTGTTGATCAGTTGTCAAAGTTCACCCAG................................................................................AAACTAGGTGACCTTTCTCCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGATACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCATTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACACTACTCAAATGAGAACACACAATCTGTTTCTTACCTTTTAGTTTGGCCTTTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTGTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCCCAGTATTTTGATTTTGAAGGTGAATCGTGTGACTTAATTGGTGTATATTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576841" ref_strand="-" ref_description="SGN-E576841 [60123]">
      <seq>ttgtggtttttcgtaggagtaaatagggttgggaaagtcaaccaatcttgctaaggtttgcttattggcttcagcagccacaaggtcaatgttatgatggcttgcgtgcgacacatttcgatccggagctgtagagcagctccgtactcatgtctcggagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatcgaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagaagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgctttctcactattttgattttgaaggtgaatcatttgacttaatggtgtatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87600" stop="89821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87900" g_stop="87952" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="0.85"/>
            <acceptor a_prob="0.991" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="167" r_length="112" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="287" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="413" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="497" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89222" g_stop="89521" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="798" r_length="301" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E576841" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576841" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87900" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGG-TTTTCGTAGGAGTAAATGGGGTT-GGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGG-TTGCTTATTGGCTTCAGCAG-CACAAGGTCAATGTTATGATGGC-TGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATG-CTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGTATATTA</genome_strand>
        <mrna_strand>TTGTGGTTTTTCGTAGGAGTAAATAGGGTTGGGAAAGTCAACCAATCTTGCTAAG..................................................................................GTTTGCTTATTGGCTTCAGCAGCCACAAGGTCAATGTTATGATGGCTTGCGTGCGACACATTTCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGTCTCGGAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATCGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGCTTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGACTTAA-TGGTGTATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289081" ref_strand="+" ref_description="SGN-E289081 [cLES-18-C24]">
      <seq>cgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87731" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87948" g_stop="87952" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="113" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88243" g_stop="88353" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="224" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E289081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87948" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGT</genome_strand>
        <mrna_strand>CGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231609" ref_strand="+" ref_description="SGN-E231609 [cLED-4-C5]">
      <seq>ttggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagccccggtcatgtttgtgggatgtggtcagtcttacacagacttgaagaagctgaatgtcaagtccatagtgaagaccctnctcaaatgagaacacacaatctgcctctacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87743" stop="89673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88043" g_stop="88142" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="220" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="346" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="430" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89222" g_stop="89373" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="582" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E231609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88043" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTC</genome_strand>
        <mrna_strand>TTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTNCTCAAATGAGAACACACAATCTGCCTCTACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432485" ref_strand="+" ref_description="SGN-E432485 [STM-57-I15]">
      <seq>tcgatccggagctgtagagcagctccgtactcatgctcggagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatcgaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagtagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgatttctcactattttgattttgaaggtgaatcatttgacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87794" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88094" g_stop="88142" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="295" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="379" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89222" g_stop="89515" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="675" r_length="296" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E432485" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88094" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGT</genome_strand>
        <mrna_strand>TCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGGAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATCGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGTAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432486" ref_strand="-" ref_description="SGN-E432486 [STM-57-I15]">
      <seq>tcgatccggagctgtagagcagctccgtactcatgctcggagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatcgaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagtagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgatttctcactattttgattttgaaggtgaatcatttgattaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87794" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88094" g_stop="88142" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="295" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="379" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89222" g_stop="89503" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="663" r_length="284" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="676"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E432486" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88094" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGA</genome_strand>
        <mrna_strand>TCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGGAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATCGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGTAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401779" ref_strand="+" ref_description="SGN-E401779 [PPC-5-E6]">
      <seq>tcgatccggagctgtagagcagctccgtactcatgctcggagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatcgaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttaacttggctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87794" stop="89684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88094" g_stop="88142" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="295" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="379" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89222" g_stop="89386" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="546" r_length="167" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E401779" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88094" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTA</genome_strand>
        <mrna_strand>TCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGGAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATCGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAACTTGGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575088" ref_strand="-" ref_description="SGN-E575088 [34657]">
      <seq>ttcggcacgaggattgttggccaaggaagcaatccaggaggctaaatcgaaatggttcagatctcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagtagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgatttctcactattttgattttgaaggtgaatcatttgacttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87982" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88269" g_stop="88362" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="221" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="305" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89222" g_stop="89513" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="599" r_length="294" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E575088" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575088" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88269" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCCTGCTATTGTT-GCCAAGGAAGCAATCCAGGAGGCT-AATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGT</genome_strand>
        <mrna_strand>TTCGGCACGAG-GATTGTTGGCCAAGGAAGCAATCCAGGAGGCTAAATCGAAATGGTTCAGATCTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGTAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGACTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612246" ref_strand="+" ref_description="SGN-E612246 [62006]">
      <seq>cactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagaagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgatttctcactattttgattttgaaggtgaatcatttgacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="88272" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88572" g_stop="88687" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="200" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89222" g_stop="89516" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="497" r_length="297" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E612246" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88572" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGTA</genome_strand>
        <mrna_strand>CACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282546" ref_strand="-" ref_description="SGN-E282546 [cLER-18-J7]">
      <seq>agcttatatatgtgacaagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagccccggtcatgtttgtgggatgtggtcagtcttacacagacttgaagaagctgaatgtcaagtccatagtgaagaccctcctcaaatgagaacacacaatctgcctctacatttcagtttggcttgtaatgtctgtttaagaagtgttgaacactttgtctgttgctgcttcagttctgtttgtaactctgtattcactcatctgtgattttatactattttgattttgaaggtgaatcatttgacttaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="88293" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88593" g_stop="88687" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="179" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89222" g_stop="89507" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="465" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="483"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E282546" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282546" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88593" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTA</genome_strand>
        <mrna_strand>AGCTTATATATGTGACAAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216255" ref_strand="+" ref_description="SGN-E216255 [cLEL-13-J20](-)">
      <seq>caaagttcaaccagaaactaggtgacctttcagcccacccaaatccaagattgattgatggaattctcccttaccaaggtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagccccggtcatgtttgtgggatgtggtcagtcttacacagacttgaagaagctgaatgtcaagtccatagtgaagaccctcctcaaatgagaacacacaatctgcctctacatttcagtttggcttgtaatgtctgtttaagaagtgttgaacactttgtctgttgctgcttcagttctgtttgtaactctgtattcactcatctgtgattttatactattttgattttgaaggtgaatcatttgacttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="88465" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88674" g_stop="88687" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="100" r_length="86" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89222" g_stop="89507" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="386" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="405"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E216255" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88674" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCT-CCTTACCAA-GTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTA</genome_strand>
        <mrna_strand>CAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCAGCCCACCCAAATCCAAGATTGATTGATGGAATTCTCCCTTACCAAGGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598480" ref_strand="+" ref_description="SGN-E598480 [74152]">
      <seq>cagcgttgtccatggttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagtagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgatttctcactattttgattttgaaggtgaatcatttgacttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="88929" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89229" g_stop="89510" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E598480" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89229" e_stop="89510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATT</genome_strand>
        <mrna_strand>CAGCGTTGTCCATGG-TTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGTAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGACTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338092" ref_strand="+" ref_description="SGN-E338092 [cTOE-13-E9]">
      <seq>ccacccccacccccaacttccttcttcccctcttgtctgttcattagcaccatagttcatggattaacctcaaagacttcaattttactatatatgtgtttgattgtacaaaatgttagattatggttcgaagtcccaagatctggatgggcagcaaaaaaaaagtttgtaaggttggatgactttgattgcggactaacctcagcgtcaacaccgtagctgcaaataaatgtggcttcatcatggaagctttaagacattctggccatgcaactagcagcccgtcaaggtcttttaagagaggaatgagaaaaggatctgaaggactaaagtcgattggtcgatcacttggatttggtgtctctaaggcagtatttcctgaagatctgaaagtttcagagaagaagatttttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="93609" stop="97833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93909" g_stop="93992" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93993" i_stop="96777" i_length="2785">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96778" g_stop="96866" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="173" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96867" i_stop="97289" i_length="423">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97290" g_stop="97533" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="417" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E338092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93909" e_stop="93992"/>
          <exon e_start="96778" e_stop="96866"/>
          <exon e_start="97290" e_stop="97533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCCCACCCCCAACTTCCTTCTTCCCCTCTTGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATTGTAAGTCCCCTTTTCTTGATCCATTCTTCTTTTTATCTTTACTTTTGTAAATATTTTCATTAAATTAGCAATATAATTAAGTTTTTTGTTTTCATTTAGTTTGAGTCTTGATTAGTTTGCTTGCTATGCTATTATCTGTTTTTGTTGTCTAAAAGTGCTTATATTTAAATTTAAAGTTGAAGGGGTTAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCTTTTTTTTGTTTATATACAAATTTACAGAGATTATTGCTTTGGTTTTTTTTATATTTTTGTTTTACTAGTTAAATGAGTCTTAACTGGTTTGCTGGTTATGTTATTGTCTGTTTTTGTTGTCTGAATTGTTTGTATTCAAATTTACAGCTGAAGGGGTCAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCCCTTTTTTGCTTTTATGCAAATTTACGGAGATTATTTCTTTGTTTTTCTGTGTGTTCTCTATCTTTTTTGACTTGTTAAACGAGTCTTGATTAGTTTGCTGTTTATCTGAATTGCTTGTATACAAATTTAAATGAGTCTTGATTAATTTGCTGGTTATGCTATCATCTGTTTTTGTTGTATGAATTGCTTGTGTGTATTTATGTACAACTGTACGGCTGAAGTGTTCAATAAAGAGTCAATCTTTATTTGGTTAAATTTTGTGGGGTATGTGCCTTCTGTGGTCGAAATGAAAAAAGATCAAGTCTTTTAAAGGTAGGATGATTTTAGAGCCTCAATACTATGCACTAATGGTTGTTTTTTTTCTTCTCTTGATTATCAGTTCACTTACATGTCAATATTTTGCAGAAGCCACTAAAAATGTATCATTCATAAAAATGGAACTAGGATTTGGGCGGTTTTCAATTTGGAGCATTTTGAGATAAAAGAGGGAGAGGGAGAGGTGATTAAGTTGTGTGTGTGTTGGGGGATGGGCTAGCAGTTTAATCATGAAATGTCCCATCGCCTGGTCAAATGCAGATTTTCTTTTTTGGAAAAAGATGTCCTAGAACATGTTATTGGATTAGTGAGAGGTTCCTCTTTTCTTATCCCGGAGATTGTGTGTCTGAGCAATACTTTTGAGATTTTAAATAAGGCTGATACCAAGATTCTTTTTATATGTCTACTGATATGATGATATTTAAAAAAGATGCTAACCTTACGGTTTTGAGATAGTAAGTTTTCTATTAAATGTCTGAAGCTTTGTGTGTTGGACTTGCAATGGAATGGATATGACATCTTTACACTTTGGTTGAAAATTTGTAAACTTCTCGATTCAGCTAACATAGGTTGTTGTACCTATAATCTAATGCTTAGGAGCTCGACTGCAGCTAAGAAGTCATGTATTTAGTGGTTTTAGGTGAGCAGAAAATGTGTTCGGTACAAGACAAGTTTCTCTTATGGTATTTGTTTCAGCTTGTGCCTCAAGCTTAGCTTATATCCATTTTCTGAAATTCAATATGTGGTAAGAAAACTGTAATAGCTATGTAATTATCTGATTATGTGATAGGAGCCAATCTGTCACACACAATTGGGAAGATAAGGCACCTAGTTTTAGGTGAAGACTGAAAAATGTTTCGTTTGATAAATTTAACAATATTTTTGAATATGTTAGGAACGGGAACCATTTCTTTCAATGATGCTCTGACTTTGTAGAATTCAGGTTCACATAACTACTAAAACTAGAAAGGCTAAGTCCTCACAGGAAGAAAGCTTAGCCCCATATATGACTCGTGCAAATCCTACGCTGAAAACGTTTATCTCACAGCTTCCAAACTATCCTCTATTAGAGTAGGAGGGAAGTTCTTGTGTATCAGCTAGCTTAAGGGAATGATATCACATAGCTTCTGCATCAACTGCAGAGATATACCAAGTAATACATATTGGCAAGATTCGGGAATAATATCTTTTAGATTTCCCTTCTCTCTCTAATTCGGGCATAAGAGAGGACGGCTTCAGGGAAATGAGACAGTAAGTGAAGAGATTTAGCAATAACTGTGCTTCTTTCCTCCCCCTCCCCCTTGCTTTCCCCAGTTAAATAGAGGGAAGAAAGATTGGGTTGAGAGCAACAAAAGGTCTCAAGTTCAAATTCCAACTGAGACAAGAATACTAGGTGGTTTCTTCCCATCTGATCTAGCCTTGGTGGACTACCTGCTGTTGGTGGGAGGTGGCAGGTATCTCGTGAAATTAGTCAAGGTGCACACAAGCTGGCCTGGACACCACGGTTATTCAAAAAAAGGGGGTGGTGGTGGTGGTGGTGGTGGAAGAAAGATAGGAGAAGAATGGATGAATCTGCTAGGTAGATATGTCGCAGCAAAGCTTTACAGGAAGGTCGTCGGTTTTGTAACTCGGGCATTGGTTATTAGAGATATCGTGAAGGAGTGACTAATTAGAATATTTTTACATCTGTGTCATGTTGAGAGCACTTGATTGAACAAGCAAGATCTGCAACATCTAAAATTCAATTTATTCCAGTTGCCTTCTTCATTTTTCTGAACTTAGTTTTTCCTTTTTCTTTCATGTTAGAAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTCTCGTGGTTCCATTTTGGAAAATAAAGCTTACTGACATGGACTCCTGATGGCTTTAATGCGAATAGAGAGTGATGTAAAATGGCAAGGCTCTTGCTATATGCAGGCAGAATTGATGTCAATGTTTAGTCTTTCATGGCCAAAAGTTAGATTGAACTTTAATCCTGAACTTAGAATCTTTTGCTTTATTGCAGTTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAGGTACTAATGATCTTTTATCAAGGTTATTAAGCTTTTATTCAGTCCACTTCTTCCGGCATATATTTTGGGGGTTGTATGTTCTTAATGTGAAAATGGAAGTCGGAGCTATGGGCTAAATACAATGTGTTATATGGTGAACTGTTGGAAATTTTGTTGTAAATCATTGGACTCTAGTTTTTTTTGCAGATAACATCTTACCCTCGCTGTCTTTGAAGATTGTTTTTGACACTCTTTTGGTTGGAAGATACATTTTTCTATTAACTGAAGATAACACCTAAAATGTTAATGTTTAGCATTTAAGCAATTTATGGCTGATGGACAGGGCGGCTTGACATGAACAATGTATTTATGGCCATTTGTTGAGTCATTGATGAATTCTCCTCGAGTATCCCTACCTTATAATGCTTCTTTACATTTTTTTAGGTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATC</genome_strand>
        <mrna_strand>CCACCCCCACCCCCAACTTCCTTCTTCCCCTCTTGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324094" ref_strand="+" ref_description="SGN-E324094 [cTOC-3-B13]">
      <seq>cccccacccccaacttcgttcttcccctcttgtctgttcattagcaccatagttcatggattaacctcaaagacttcaattgttggatgactttgattgcggactaacctcagcgtcaacaccgtagctgcaaataaatgtggcttcatcatggaagctttaagacattctggccatgcaactagcagcccgtcaaggtcttttaagagaggaatgagaaaaggatctgaaggactaaagtcgattggtcgatcacttggatttggtgtctctaaggcagtatttcctgaagatctgaaagtttcagagaagaagatttttgatcctcaagataaattccttctcttgtggaataagctgtttgttatatcatgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="93612" stop="97887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93912" g_stop="93992" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93993" i_stop="97289" i_length="3297">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97290" g_stop="97587" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="379" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E324094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93912" e_stop="93992"/>
          <exon e_start="97290" e_stop="97587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCACCCCCAACTTCCTTCTTCCCCTCTTGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATTGTAAGTCCCCTTTTCTTGATCCATTCTTCTTTTTATCTTTACTTTTGTAAATATTTTCATTAAATTAGCAATATAATTAAGTTTTTTGTTTTCATTTAGTTTGAGTCTTGATTAGTTTGCTTGCTATGCTATTATCTGTTTTTGTTGTCTAAAAGTGCTTATATTTAAATTTAAAGTTGAAGGGGTTAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCTTTTTTTTGTTTATATACAAATTTACAGAGATTATTGCTTTGGTTTTTTTTATATTTTTGTTTTACTAGTTAAATGAGTCTTAACTGGTTTGCTGGTTATGTTATTGTCTGTTTTTGTTGTCTGAATTGTTTGTATTCAAATTTACAGCTGAAGGGGTCAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCCCTTTTTTGCTTTTATGCAAATTTACGGAGATTATTTCTTTGTTTTTCTGTGTGTTCTCTATCTTTTTTGACTTGTTAAACGAGTCTTGATTAGTTTGCTGTTTATCTGAATTGCTTGTATACAAATTTAAATGAGTCTTGATTAATTTGCTGGTTATGCTATCATCTGTTTTTGTTGTATGAATTGCTTGTGTGTATTTATGTACAACTGTACGGCTGAAGTGTTCAATAAAGAGTCAATCTTTATTTGGTTAAATTTTGTGGGGTATGTGCCTTCTGTGGTCGAAATGAAAAAAGATCAAGTCTTTTAAAGGTAGGATGATTTTAGAGCCTCAATACTATGCACTAATGGTTGTTTTTTTTCTTCTCTTGATTATCAGTTCACTTACATGTCAATATTTTGCAGAAGCCACTAAAAATGTATCATTCATAAAAATGGAACTAGGATTTGGGCGGTTTTCAATTTGGAGCATTTTGAGATAAAAGAGGGAGAGGGAGAGGTGATTAAGTTGTGTGTGTGTTGGGGGATGGGCTAGCAGTTTAATCATGAAATGTCCCATCGCCTGGTCAAATGCAGATTTTCTTTTTTGGAAAAAGATGTCCTAGAACATGTTATTGGATTAGTGAGAGGTTCCTCTTTTCTTATCCCGGAGATTGTGTGTCTGAGCAATACTTTTGAGATTTTAAATAAGGCTGATACCAAGATTCTTTTTATATGTCTACTGATATGATGATATTTAAAAAAGATGCTAACCTTACGGTTTTGAGATAGTAAGTTTTCTATTAAATGTCTGAAGCTTTGTGTGTTGGACTTGCAATGGAATGGATATGACATCTTTACACTTTGGTTGAAAATTTGTAAACTTCTCGATTCAGCTAACATAGGTTGTTGTACCTATAATCTAATGCTTAGGAGCTCGACTGCAGCTAAGAAGTCATGTATTTAGTGGTTTTAGGTGAGCAGAAAATGTGTTCGGTACAAGACAAGTTTCTCTTATGGTATTTGTTTCAGCTTGTGCCTCAAGCTTAGCTTATATCCATTTTCTGAAATTCAATATGTGGTAAGAAAACTGTAATAGCTATGTAATTATCTGATTATGTGATAGGAGCCAATCTGTCACACACAATTGGGAAGATAAGGCACCTAGTTTTAGGTGAAGACTGAAAAATGTTTCGTTTGATAAATTTAACAATATTTTTGAATATGTTAGGAACGGGAACCATTTCTTTCAATGATGCTCTGACTTTGTAGAATTCAGGTTCACATAACTACTAAAACTAGAAAGGCTAAGTCCTCACAGGAAGAAAGCTTAGCCCCATATATGACTCGTGCAAATCCTACGCTGAAAACGTTTATCTCACAGCTTCCAAACTATCCTCTATTAGAGTAGGAGGGAAGTTCTTGTGTATCAGCTAGCTTAAGGGAATGATATCACATAGCTTCTGCATCAACTGCAGAGATATACCAAGTAATACATATTGGCAAGATTCGGGAATAATATCTTTTAGATTTCCCTTCTCTCTCTAATTCGGGCATAAGAGAGGACGGCTTCAGGGAAATGAGACAGTAAGTGAAGAGATTTAGCAATAACTGTGCTTCTTTCCTCCCCCTCCCCCTTGCTTTCCCCAGTTAAATAGAGGGAAGAAAGATTGGGTTGAGAGCAACAAAAGGTCTCAAGTTCAAATTCCAACTGAGACAAGAATACTAGGTGGTTTCTTCCCATCTGATCTAGCCTTGGTGGACTACCTGCTGTTGGTGGGAGGTGGCAGGTATCTCGTGAAATTAGTCAAGGTGCACACAAGCTGGCCTGGACACCACGGTTATTCAAAAAAAGGGGGTGGTGGTGGTGGTGGTGGTGGAAGAAAGATAGGAGAAGAATGGATGAATCTGCTAGGTAGATATGTCGCAGCAAAGCTTTACAGGAAGGTCGTCGGTTTTGTAACTCGGGCATTGGTTATTAGAGATATCGTGAAGGAGTGACTAATTAGAATATTTTTACATCTGTGTCATGTTGAGAGCACTTGATTGAACAAGCAAGATCTGCAACATCTAAAATTCAATTTATTCCAGTTGCCTTCTTCATTTTTCTGAACTTAGTTTTTCCTTTTTCTTTCATGTTAGAAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTCTCGTGGTTCCATTTTGGAAAATAAAGCTTACTGACATGGACTCCTGATGGCTTTAATGCGAATAGAGAGTGATGTAAAATGGCAAGGCTCTTGCTATATGCAGGCAGAATTGATGTCAATGTTTAGTCTTTCATGGCCAAAAGTTAGATTGAACTTTAATCCTGAACTTAGAATCTTTTGCTTTATTGCAGTTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAGGTACTAATGATCTTTTATCAAGGTTATTAAGCTTTTATTCAGTCCACTTCTTCCGGCATATATTTTGGGGGTTGTATGTTCTTAATGTGAAAATGGAAGTCGGAGCTATGGGCTAAATACAATGTGTTATATGGTGAACTGTTGGAAATTTTGTTGTAAATCATTGGACTCTAGTTTTTTTTGCAGATAACATCTTACCCTCGCTGTCTTTGAAGATTGTTTTTGACACTCTTTTGGTTGGAAGATACATTTTTCTATTAACTGAAGATAACACCTAAAATGTTAATGTTTAGCATTTAAGCAATTTATGGCTGATGGACAGGGCGGCTTGACATGAACAATGTATTTATGGCCATTTGTTGAGTCATTGATGAATTCTCCTCGAGTATCCCTACCTTATAATGCTTCTTTACATTTTTTTAGGTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTC</genome_strand>
        <mrna_strand>CCCCCACCCCCAACTTCGTTCTTCCCCTCTTGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428003" ref_strand="+" ref_description="SGN-E428003 [STM-49-B13]">
      <seq>tgtctgttcttttgcaccatagttcatggattaacctcaaatattttaattaaattgttgttgaactagctcaatatatgattctcttttcgtggttccattttggaaaataaagcttgctgacttggacccctgatggctttaatgcgagtagagaatgatgtaaaatgttactatatatgtgtttgattgtacaaaatgtttgattacggttccaagtcccaagttctggatgggcagccaaaaaaagtttgtaaggttgaatgactttgattgcggactaacctcagcgtcgacaccgtagcagcaaataaatgtggcttcatcatggaagctttaagacattctggccatgcaactagcagcccgtcaaggtcttttaagagaggaatgagaaaaggatctgaaggactgaagtcgattggtcgatcactaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="93642" stop="97773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93942" g_stop="93992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93993" i_stop="96548" i_length="2556">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96549" g_stop="96667" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="170" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96668" i_stop="96777" i_length="110">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96778" g_stop="96866" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="258" r_length="88" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96867" i_stop="97289" i_length="423">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97290" g_stop="97473" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="442" r_length="184" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E428003" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93942" e_stop="93992"/>
          <exon e_start="96549" e_stop="96667"/>
          <exon e_start="96778" e_stop="96866"/>
          <exon e_start="97290" e_stop="97473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATTGTAAGTCCCCTTTTCTTGATCCATTCTTCTTTTTATCTTTACTTTTGTAAATATTTTCATTAAATTAGCAATATAATTAAGTTTTTTGTTTTCATTTAGTTTGAGTCTTGATTAGTTTGCTTGCTATGCTATTATCTGTTTTTGTTGTCTAAAAGTGCTTATATTTAAATTTAAAGTTGAAGGGGTTAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCTTTTTTTTGTTTATATACAAATTTACAGAGATTATTGCTTTGGTTTTTTTTATATTTTTGTTTTACTAGTTAAATGAGTCTTAACTGGTTTGCTGGTTATGTTATTGTCTGTTTTTGTTGTCTGAATTGTTTGTATTCAAATTTACAGCTGAAGGGGTCAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCCCTTTTTTGCTTTTATGCAAATTTACGGAGATTATTTCTTTGTTTTTCTGTGTGTTCTCTATCTTTTTTGACTTGTTAAACGAGTCTTGATTAGTTTGCTGTTTATCTGAATTGCTTGTATACAAATTTAAATGAGTCTTGATTAATTTGCTGGTTATGCTATCATCTGTTTTTGTTGTATGAATTGCTTGTGTGTATTTATGTACAACTGTACGGCTGAAGTGTTCAATAAAGAGTCAATCTTTATTTGGTTAAATTTTGTGGGGTATGTGCCTTCTGTGGTCGAAATGAAAAAAGATCAAGTCTTTTAAAGGTAGGATGATTTTAGAGCCTCAATACTATGCACTAATGGTTGTTTTTTTTCTTCTCTTGATTATCAGTTCACTTACATGTCAATATTTTGCAGAAGCCACTAAAAATGTATCATTCATAAAAATGGAACTAGGATTTGGGCGGTTTTCAATTTGGAGCATTTTGAGATAAAAGAGGGAGAGGGAGAGGTGATTAAGTTGTGTGTGTGTTGGGGGATGGGCTAGCAGTTTAATCATGAAATGTCCCATCGCCTGGTCAAATGCAGATTTTCTTTTTTGGAAAAAGATGTCCTAGAACATGTTATTGGATTAGTGAGAGGTTCCTCTTTTCTTATCCCGGAGATTGTGTGTCTGAGCAATACTTTTGAGATTTTAAATAAGGCTGATACCAAGATTCTTTTTATATGTCTACTGATATGATGATATTTAAAAAAGATGCTAACCTTACGGTTTTGAGATAGTAAGTTTTCTATTAAATGTCTGAAGCTTTGTGTGTTGGACTTGCAATGGAATGGATATGACATCTTTACACTTTGGTTGAAAATTTGTAAACTTCTCGATTCAGCTAACATAGGTTGTTGTACCTATAATCTAATGCTTAGGAGCTCGACTGCAGCTAAGAAGTCATGTATTTAGTGGTTTTAGGTGAGCAGAAAATGTGTTCGGTACAAGACAAGTTTCTCTTATGGTATTTGTTTCAGCTTGTGCCTCAAGCTTAGCTTATATCCATTTTCTGAAATTCAATATGTGGTAAGAAAACTGTAATAGCTATGTAATTATCTGATTATGTGATAGGAGCCAATCTGTCACACACAATTGGGAAGATAAGGCACCTAGTTTTAGGTGAAGACTGAAAAATGTTTCGTTTGATAAATTTAACAATATTTTTGAATATGTTAGGAACGGGAACCATTTCTTTCAATGATGCTCTGACTTTGTAGAATTCAGGTTCACATAACTACTAAAACTAGAAAGGCTAAGTCCTCACAGGAAGAAAGCTTAGCCCCATATATGACTCGTGCAAATCCTACGCTGAAAACGTTTATCTCACAGCTTCCAAACTATCCTCTATTAGAGTAGGAGGGAAGTTCTTGTGTATCAGCTAGCTTAAGGGAATGATATCACATAGCTTCTGCATCAACTGCAGAGATATACCAAGTAATACATATTGGCAAGATTCGGGAATAATATCTTTTAGATTTCCCTTCTCTCTCTAATTCGGGCATAAGAGAGGACGGCTTCAGGGAAATGAGACAGTAAGTGAAGAGATTTAGCAATAACTGTGCTTCTTTCCTCCCCCTCCCCCTTGCTTTCCCCAGTTAAATAGAGGGAAGAAAGATTGGGTTGAGAGCAACAAAAGGTCTCAAGTTCAAATTCCAACTGAGACAAGAATACTAGGTGGTTTCTTCCCATCTGATCTAGCCTTGGTGGACTACCTGCTGTTGGTGGGAGGTGGCAGGTATCTCGTGAAATTAGTCAAGGTGCACACAAGCTGGCCTGGACACCACGGTTATTCAAAAAAAGGGGGTGGTGGTGGTGGTGGTGGTGGAAGAAAGATAGGAGAAGAATGGATGAATCTGCTAGGTAGATATGTCGCAGCAAAGCTTTACAGGAAGGTCGTCGGTTTTGTAACTCGGGCATTGGTTATTAGAGATATCGTGAAGGAGTGACTAATTAGAATATTTTTACATCTGTGTCATGTTGAGAGCACTTGATTGAACAAGCAAGATCTGCAACATCTAAAATTCAATTTATTCCAGTTGCCTTCTTCATTTTTCTGAACTTAGTTTTTCCTTTTTCTTTCATGTTAGAAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTCTCGTGGTTCCATTTTGGAAAATAAAGCTTACTGACATGGACTCCTGATGGCTTTAATGCGAATAGAGAGTGATGTAAAATGGCAAGGCTCTTGCTATATGCAGGCAGAATTGATGTCAATGTTTAGTCTTTCATGGCCAAAAGTTAGATTGAACTTTAATCCTGAACTTAGAATCTTTTGCTTTATTGCAGTTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAGGTACTAATGATCTTTTATCAAGGTTATTAAGCTTTTATTCAGTCCACTTCTTCCGGCATATATTTTGGGGGTTGTATGTTCTTAATGTGAAAATGGAAGTCGGAGCTATGGGCTAAATACAATGTGTTATATGGTGAACTGTTGGAAATTTTGTTGTAAATCATTGGACTCTAGTTTTTTTTGCAGATAACATCTTACCCTCGCTGTCTTTGAAGATTGTTTTTGACACTCTTTTGGTTGGAAGATACATTTTTCTATTAACTGAAGATAACACCTAAAATGTTAATGTTTAGCATTTAAGCAATTTATGGCTGATGGACAGGGCGGCTTGACATGAACAATGTATTTATGGCCATTTGTTGAGTCATTGATGAATTCTCCTCGAGTATCCCTACCTTATAATGCTTCTTTACATTTTTTTAGGTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTG</genome_strand>
        <mrna_strand>TGTCTGTTCTTTTGCACCATAGTTCATGGATTAACCTCAAATATTTTAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTTTCGTGGTTCCATTTTGGAAAATAAAGCTTGCTGACTTGGACCCCTGATGGCTTTAATGCGAGTAGAGAATGATGTAAAATG..............................................................................................................TTACTATATATGTGTTTGATTGTACAAAATGTTTGATTACGGTTCCAAGTCCCAAGTTCTGGATGGGCAGC-CAAAAAAAGTTTGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATGACTTTGATTGCGGACTAACCTCAGCGTCGACACCGTAGCAGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTGAAGTCGATTGGTCGATCACTAAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478397" ref_strand="+" ref_description="SGN-E478397 [cSTD-4-L1]">
      <seq>tgtctgttcttttgcaccatagttcatggattaacctcaaagactttaattaaattgttgttgaactagctcaatatatgattctcttttcgtggttccattttggaaaataaagcttgctgacttggacccctgatggctttaatgcgagtagagaatgatgtaaaatgttactatatatgtgtttgattgtacaaaatgtttgattacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="93642" stop="97119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93942" g_stop="93992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93993" i_stop="96548" i_length="2556">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96549" g_stop="96667" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="170" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96668" i_stop="96777" i_length="110">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96778" g_stop="96819" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="212" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E478397" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93942" e_stop="93992"/>
          <exon e_start="96549" e_stop="96667"/>
          <exon e_start="96778" e_stop="96819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATTGTAAGTCCCCTTTTCTTGATCCATTCTTCTTTTTATCTTTACTTTTGTAAATATTTTCATTAAATTAGCAATATAATTAAGTTTTTTGTTTTCATTTAGTTTGAGTCTTGATTAGTTTGCTTGCTATGCTATTATCTGTTTTTGTTGTCTAAAAGTGCTTATATTTAAATTTAAAGTTGAAGGGGTTAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCTTTTTTTTGTTTATATACAAATTTACAGAGATTATTGCTTTGGTTTTTTTTATATTTTTGTTTTACTAGTTAAATGAGTCTTAACTGGTTTGCTGGTTATGTTATTGTCTGTTTTTGTTGTCTGAATTGTTTGTATTCAAATTTACAGCTGAAGGGGTCAATAAAGATTCAATCTTTATTGGTTAACATCTATGGGGTTTGTCCCTTTTTTGCTTTTATGCAAATTTACGGAGATTATTTCTTTGTTTTTCTGTGTGTTCTCTATCTTTTTTGACTTGTTAAACGAGTCTTGATTAGTTTGCTGTTTATCTGAATTGCTTGTATACAAATTTAAATGAGTCTTGATTAATTTGCTGGTTATGCTATCATCTGTTTTTGTTGTATGAATTGCTTGTGTGTATTTATGTACAACTGTACGGCTGAAGTGTTCAATAAAGAGTCAATCTTTATTTGGTTAAATTTTGTGGGGTATGTGCCTTCTGTGGTCGAAATGAAAAAAGATCAAGTCTTTTAAAGGTAGGATGATTTTAGAGCCTCAATACTATGCACTAATGGTTGTTTTTTTTCTTCTCTTGATTATCAGTTCACTTACATGTCAATATTTTGCAGAAGCCACTAAAAATGTATCATTCATAAAAATGGAACTAGGATTTGGGCGGTTTTCAATTTGGAGCATTTTGAGATAAAAGAGGGAGAGGGAGAGGTGATTAAGTTGTGTGTGTGTTGGGGGATGGGCTAGCAGTTTAATCATGAAATGTCCCATCGCCTGGTCAAATGCAGATTTTCTTTTTTGGAAAAAGATGTCCTAGAACATGTTATTGGATTAGTGAGAGGTTCCTCTTTTCTTATCCCGGAGATTGTGTGTCTGAGCAATACTTTTGAGATTTTAAATAAGGCTGATACCAAGATTCTTTTTATATGTCTACTGATATGATGATATTTAAAAAAGATGCTAACCTTACGGTTTTGAGATAGTAAGTTTTCTATTAAATGTCTGAAGCTTTGTGTGTTGGACTTGCAATGGAATGGATATGACATCTTTACACTTTGGTTGAAAATTTGTAAACTTCTCGATTCAGCTAACATAGGTTGTTGTACCTATAATCTAATGCTTAGGAGCTCGACTGCAGCTAAGAAGTCATGTATTTAGTGGTTTTAGGTGAGCAGAAAATGTGTTCGGTACAAGACAAGTTTCTCTTATGGTATTTGTTTCAGCTTGTGCCTCAAGCTTAGCTTATATCCATTTTCTGAAATTCAATATGTGGTAAGAAAACTGTAATAGCTATGTAATTATCTGATTATGTGATAGGAGCCAATCTGTCACACACAATTGGGAAGATAAGGCACCTAGTTTTAGGTGAAGACTGAAAAATGTTTCGTTTGATAAATTTAACAATATTTTTGAATATGTTAGGAACGGGAACCATTTCTTTCAATGATGCTCTGACTTTGTAGAATTCAGGTTCACATAACTACTAAAACTAGAAAGGCTAAGTCCTCACAGGAAGAAAGCTTAGCCCCATATATGACTCGTGCAAATCCTACGCTGAAAACGTTTATCTCACAGCTTCCAAACTATCCTCTATTAGAGTAGGAGGGAAGTTCTTGTGTATCAGCTAGCTTAAGGGAATGATATCACATAGCTTCTGCATCAACTGCAGAGATATACCAAGTAATACATATTGGCAAGATTCGGGAATAATATCTTTTAGATTTCCCTTCTCTCTCTAATTCGGGCATAAGAGAGGACGGCTTCAGGGAAATGAGACAGTAAGTGAAGAGATTTAGCAATAACTGTGCTTCTTTCCTCCCCCTCCCCCTTGCTTTCCCCAGTTAAATAGAGGGAAGAAAGATTGGGTTGAGAGCAACAAAAGGTCTCAAGTTCAAATTCCAACTGAGACAAGAATACTAGGTGGTTTCTTCCCATCTGATCTAGCCTTGGTGGACTACCTGCTGTTGGTGGGAGGTGGCAGGTATCTCGTGAAATTAGTCAAGGTGCACACAAGCTGGCCTGGACACCACGGTTATTCAAAAAAAGGGGGTGGTGGTGGTGGTGGTGGTGGAAGAAAGATAGGAGAAGAATGGATGAATCTGCTAGGTAGATATGTCGCAGCAAAGCTTTACAGGAAGGTCGTCGGTTTTGTAACTCGGGCATTGGTTATTAGAGATATCGTGAAGGAGTGACTAATTAGAATATTTTTACATCTGTGTCATGTTGAGAGCACTTGATTGAACAAGCAAGATCTGCAACATCTAAAATTCAATTTATTCCAGTTGCCTTCTTCATTTTTCTGAACTTAGTTTTTCCTTTTTCTTTCATGTTAGAAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTCTCGTGGTTCCATTTTGGAAAATAAAGCTTACTGACATGGACTCCTGATGGCTTTAATGCGAATAGAGAGTGATGTAAAATGGCAAGGCTCTTGCTATATGCAGGCAGAATTGATGTCAATGTTTAGTCTTTCATGGCCAAAAGTTAGATTGAACTTTAATCCTGAACTTAGAATCTTTTGCTTTATTGCAGTTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGG</genome_strand>
        <mrna_strand>TGTCTGTTCTTTTGCACCATAGTTCATGGATTAACCTCAAAGACTTTAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTTTCGTGGTTCCATTTTGGAAAATAAAGCTTGCTGACTTGGACCCCTGATGGCTTTAATGCGAGTAGAGAATGATGTAAAATG..............................................................................................................TTACTATATATGTGTTTGATTGTACAAAATGTTTGATTACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546196" ref_strand="+" ref_description="SGN-E546196 [TUS-69-G24]">
      <seq>ggttggatggctttgattgcggactaacctcagcgtcaacaccgtagctgcaaataaatgtggcttcatcatggaagctttaagacattctggccatgcaactagcagcccgtcaaggtcttttaagagaggaatgagaaaaggatctgaaggactaaagtcgattggtcgatcacttggatttggtgtctctaaggcagtatttcctgaagatctgaaagtttcagagaagaagatttttgatcctcaagataaattccttctcttgtggaataagctgtttgttatatcatgcattctggctgtgtctgttgatccgttgtttttctaccttccagttttcgatgacaagtcaaattgccttcagattgatcgaaagctagctgtgatagccacaactcttcgtaccgttgttgatgctttctatcttattcacatggcacttcagtttcgtacagcttatattgcaccatcctctcgagtttttggaaggggtgaactagtgatagatcctggacagattgctaaaagatacttgcgatcctattttatcatcgatcttcttgctgtggttcccttgcctcagattgtagctgggagattcctgcagagatcgacaggttctgatgttctggctaccaacaagctttgctctatatcattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="96989" stop="98832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97289" g_stop="97874" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98451" g_stop="98532" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="667" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E546196" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97289" e_stop="97874"/>
          <exon e_start="98451" e_stop="98532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAGGTTTAAAGAAATGCTTTATTTTTTTTTTATGTCTCTCTACATTGAAACTTTATTTCCTTTAGTAAACTACCATGGCTCTTATGATCACTGACCTTATACTCCCTCCAACCTAATTTGTGTGGCACCATTTAACTTGACACATAATTTAAGAAAGAAAGGTAGACCTTTGAAATTTGTGGTCCAAAACAAACCTTAGCCATTTTTCTGGCTATAATTTACTATAAATCATTTTATTAAGGGTAAGAGGAGAATTTTAAAGCTATTCTTTCTAATTATAGAAAGGTGACGATCTGCTTGGGACGGACCAAAAAGGGAAGTGTGCCACAAAATGATTGTCTCCTTCTTGTTATATCATGCTTTCACTTTTCAAGGTTCTTTCTTCTTACTGTCCTAAATGGGGTTGAGTGGGATTTTCATCCCGATTCTCTACCTTTCTGTGTTACGATACTGTCAATGGATGTTTTGATATGCTTTGCCTTTTTATTAAGTCATTTGTTTATGAATCAGCCCATACAGCTCTTTTGATGAATGGCCTATCGTCATTCACTTTGCTTTTCCTTTTATGGATCTATACAGATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGC</genome_strand>
        <mrna_strand>GGTTGGATGGCTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCTGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTTGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACC-AACAAGCTTTGCTCTATATCATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358538" ref_strand="+" ref_description="SGN-E358538 [cLHT-22-B11]">
      <seq>gttggatggctttgattgcggactaacctcagcgtcaacaccgtagctgcaaataaatgtggcttcatcatggaagctttaagacattctggccatgcaactagcagcccgtcaaggtcttttaagagaggaatgagaaaaggatctgaaggactaaagtcgattggtcgatcacttggatttggtgtctctaaggcagtatttcctgaagatctgaaagtttcagagaagaagatttttgatcctcaagataaattccttctcttgtggaataagctgtttgttatatcatgcattctggctgtgtctgttgatccgttgtttttctaccttccagttttcgatgacaagtcaaattgccttcagattgatcgaaagctagctgtgatagccacaactcttcgtaccgttgttgatgctttctatcttattcacatggcacttcagtttcgtacagcttatattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="96990" stop="98057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97290" g_stop="97757" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E358538" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97290" e_stop="97757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCA</genome_strand>
        <mrna_strand>GTTGGATGGCTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCTGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTTGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315619" ref_strand="+" ref_description="SGN-E315619 [cTOA-22-F23]">
      <seq>tttgatcctcaagataaattccttctcttgtggaataagctgtttgttatatcatgcattctggccgtgtctgttgatccgttgtttttctaccttccagttttcgatgacaagtcaaattgccttcagattgatcgaaagctagctgtgatagccacaactcttcgtaccgttgtcgatgctttctatcttattcacatggcacttcagtttcgtacagcttatattgcaccatcctctcgagtttttggaaggggtgaactagtgatagatcctggacagattgctaaaagatacttgcgatcctattttatcatcgatcttcttgctgtggttcccttgcctcagattgtagctgggagattcctgcagagatcgacaggttctgatgttctggctaccaaacaagctttgctctatatcattttgctccagtatatccccagatttgtccgagttatacccttaacgtcagaattgaaaagaactactggtgtcttcgctgaaactgcatgggctggtgctgcatcctatttgctgttgtacatgcttgctagtcacatagttggctcgttctggtatttgctttctgtggaacgctatgatacatgctgggaaagagcttgtagtcataacacaacatgccaaactgatttcttgtactngcggcatcaaggcatgacagggtataatgcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="97227" stop="99976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97527" g_stop="97874" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98451" g_stop="98663" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="561" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99538" g_stop="99676" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="700" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E315619" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97527" e_stop="97874"/>
          <exon e_start="98451" e_stop="98663"/>
          <exon e_start="99538" e_stop="99676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAGGTTTAAAGAAATGCTTTATTTTTTTTTTATGTCTCTCTACATTGAAACTTTATTTCCTTTAGTAAACTACCATGGCTCTTATGATCACTGACCTTATACTCCCTCCAACCTAATTTGTGTGGCACCATTTAACTTGACACATAATTTAAGAAAGAAAGGTAGACCTTTGAAATTTGTGGTCCAAAACAAACCTTAGCCATTTTTCTGGCTATAATTTACTATAAATCATTTTATTAAGGGTAAGAGGAGAATTTTAAAGCTATTCTTTCTAATTATAGAAAGGTGACGATCTGCTTGGGACGGACCAAAAAGGGAAGTGTGCCACAAAATGATTGTCTCCTTCTTGTTATATCATGCTTTCACTTTTCAAGGTTCTTTCTTCTTACTGTCCTAAATGGGGTTGAGTGGGATTTTCATCCCGATTCTCTACCTTTCTGTGTTACGATACTGTCAATGGATGTTTTGATATGCTTTGCCTTTTTATTAAGTCATTTGTTTATGAATCAGCCCATACAGCTCTTTTGATGAATGGCCTATCGTCATTCACTTTGCTTTTCCTTTTATGGATCTATACAGATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCACGTAAGCTACTTATTAAGTTGCCGAAATGTTTGCTATCTGTTCTGCTAAGATAACTGTCCATTGCATTGTTTTGAAATGTAAATCTTCTTTTTTTCATTGGCATAATACATAAATGTGCCCTTTAATTTGGCTTCAAATCACATTCATGCCCTTCAACTTTGGATGTGCACAATTAGACTACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTTGTCTTACGTGGTGTTCTACGTGTGTTGTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCCTATTTGTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTATAGCCAAGTTTAGGGTTCAATATATGTATTATACCATTTTCTTTTGTGTAAAATTCTCTTCTTTGCGGAAGTGGAAGTTCTGGTTTCCTGCTGTATTCTGTCATTTTGCAGATCATTATGAGGGAAAATCTTTATTAATATGAAATCTCTGTTTATAGCATCTTCATCGTCTTTTAGATGGATTGAAGCTAAAACCGCATCCGTAAAGTAAAGTTAATTTGTAAATGAAACAATTATCTGAAAATAGGTGAATAACTTATCAACAACTATACATGTTGTATTGGTTTAAAAGAAATGCAGTGTACTCTCCGTTTTCTGGTTCAATTGCATGTATATGGAGTTTGCTGTTTCATTTTCCAACTAGAAAATGTTCACTTGTTCTGCAAAGCATATGCAAATTAGATGGTTTTTCGTTGAAATTTCGGATTGCTCATCTTTGCTAGAACATCGCAAAGGTTATCTCAAGGTGGAATTTCTGATTGTTCCTTGCTTCCATTCTCGTTGGTTCTTTTCAGATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACT-GCGGCAATCAAGGCATGACAGGGTATAATGCTTGGA</genome_strand>
        <mrna_strand>TTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTNGCGGC-ATCAAGGCATGACAGGGTATAATGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285034" ref_strand="+" ref_description="SGN-E285034 [cLER-19-J13]">
      <seq>ggccgtgtctgttgatccgttgtttttctaccttccagttttcgatgacaagtcaaattgccttcagattgatcgaaagctagctgtgatagccacaactcttcgtaccgttgtcgatgctttctatcttattcacatggcacttcagtttcgtacagcttatattgcaccatcctctcgagtttttggaaggggtgaactagtgatagatcctggacagattgctaaaagatacttgcgatcctattttatcatcgatcttcttgctgtggttcccttgcctcagattgtagctgggagattcctgcagagatcgacaggttctgatgttctggctaccaaacaagctttgctctatatcattttgctccagtatatccccagatttgtccgagttatacccttaacgtcagaattgaaaagaactactggtgtcttcgctgaaactgcatgggctggtgctgcatcctatttgctgttgtacatgcttgctagtcacatagttggctcgttctggtatttgctttctgtggaacgctatgatacatgctgggaaagagcttgtagtcataacacaacatgccaaactgatttcttgtactgcggcaatcaaggcatgacagggtataatgcttggagcaatatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="97289" stop="99986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97589" g_stop="97874" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98451" g_stop="98663" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="499" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99538" g_stop="99686" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="648" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E285034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97589" e_stop="97874"/>
          <exon e_start="98451" e_stop="98663"/>
          <exon e_start="99538" e_stop="99686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAGGTTTAAAGAAATGCTTTATTTTTTTTTTATGTCTCTCTACATTGAAACTTTATTTCCTTTAGTAAACTACCATGGCTCTTATGATCACTGACCTTATACTCCCTCCAACCTAATTTGTGTGGCACCATTTAACTTGACACATAATTTAAGAAAGAAAGGTAGACCTTTGAAATTTGTGGTCCAAAACAAACCTTAGCCATTTTTCTGGCTATAATTTACTATAAATCATTTTATTAAGGGTAAGAGGAGAATTTTAAAGCTATTCTTTCTAATTATAGAAAGGTGACGATCTGCTTGGGACGGACCAAAAAGGGAAGTGTGCCACAAAATGATTGTCTCCTTCTTGTTATATCATGCTTTCACTTTTCAAGGTTCTTTCTTCTTACTGTCCTAAATGGGGTTGAGTGGGATTTTCATCCCGATTCTCTACCTTTCTGTGTTACGATACTGTCAATGGATGTTTTGATATGCTTTGCCTTTTTATTAAGTCATTTGTTTATGAATCAGCCCATACAGCTCTTTTGATGAATGGCCTATCGTCATTCACTTTGCTTTTCCTTTTATGGATCTATACAGATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCACGTAAGCTACTTATTAAGTTGCCGAAATGTTTGCTATCTGTTCTGCTAAGATAACTGTCCATTGCATTGTTTTGAAATGTAAATCTTCTTTTTTTCATTGGCATAATACATAAATGTGCCCTTTAATTTGGCTTCAAATCACATTCATGCCCTTCAACTTTGGATGTGCACAATTAGACTACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTTGTCTTACGTGGTGTTCTACGTGTGTTGTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCCTATTTGTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTATAGCCAAGTTTAGGGTTCAATATATGTATTATACCATTTTCTTTTGTGTAAAATTCTCTTCTTTGCGGAAGTGGAAGTTCTGGTTTCCTGCTGTATTCTGTCATTTTGCAGATCATTATGAGGGAAAATCTTTATTAATATGAAATCTCTGTTTATAGCATCTTCATCGTCTTTTAGATGGATTGAAGCTAAAACCGCATCCGTAAAGTAAAGTTAATTTGTAAATGAAACAATTATCTGAAAATAGGTGAATAACTTATCAACAACTATACATGTTGTATTGGTTTAAAAGAAATGCAGTGTACTCTCCGTTTTCTGGTTCAATTGCATGTATATGGAGTTTGCTGTTTCATTTTCCAACTAGAAAATGTTCACTTGTTCTGCAAAGCATATGCAAATTAGATGGTTTTTCGTTGAAATTTCGGATTGCTCATCTTTGCTAGAACATCGCAAAGGTTATCTCAAGGTGGAATTTCTGATTGTTCCTTGCTTCCATTCTCGTTGGTTCTTTTCAGATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAG</genome_strand>
        <mrna_strand>GGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213759" ref_strand="+" ref_description="SGN-E213759 [cLEC-76-E7]">
      <seq>accaaacaagctttgctctatatcattttgctccagtatatccccagatttgtccgagttatacccttaacgtcagaattgaaaagaactactggtgtcttcgctgaaactgcatgggctggtgctgcatcctatttgctgttgtacatgcttgctagtcacatagttggctcgttctggtatttgctttctgtggaacgctatgatacatgctgggaaagaacttggaatcataacacaacatgccaaactgatttcttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="98202" stop="99939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98502" g_stop="98663" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99538" g_stop="99639" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="264" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E213759" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98502" e_stop="98663"/>
          <exon e_start="99538" e_stop="99639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCACGTAAGCTACTTATTAAGTTGCCGAAATGTTTGCTATCTGTTCTGCTAAGATAACTGTCCATTGCATTGTTTTGAAATGTAAATCTTCTTTTTTTCATTGGCATAATACATAAATGTGCCCTTTAATTTGGCTTCAAATCACATTCATGCCCTTCAACTTTGGATGTGCACAATTAGACTACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTTGTCTTACGTGGTGTTCTACGTGTGTTGTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCCTATTTGTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTATAGCCAAGTTTAGGGTTCAATATATGTATTATACCATTTTCTTTTGTGTAAAATTCTCTTCTTTGCGGAAGTGGAAGTTCTGGTTTCCTGCTGTATTCTGTCATTTTGCAGATCATTATGAGGGAAAATCTTTATTAATATGAAATCTCTGTTTATAGCATCTTCATCGTCTTTTAGATGGATTGAAGCTAAAACCGCATCCGTAAAGTAAAGTTAATTTGTAAATGAAACAATTATCTGAAAATAGGTGAATAACTTATCAACAACTATACATGTTGTATTGGTTTAAAAGAAATGCAGTGTACTCTCCGTTTTCTGGTTCAATTGCATGTATATGGAGTTTGCTGTTTCATTTTCCAACTAGAAAATGTTCACTTGTTCTGCAAAGCATATGCAAATTAGATGGTTTTTCGTTGAAATTTCGGATTGCTCATCTTTGCTAGAACATCGCAAAGGTTATCTCAAGGTGGAATTTCTGATTGTTCCTTGCTTCCATTCTCGTTGGTTCTTTTCAGATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTAC</genome_strand>
        <mrna_strand>ACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAACTTGGAATCATAACACAACATGCCAAACTGATTTCTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200304" ref_strand="+" ref_description="SGN-E200304 [cLEC-1-A11]">
      <seq>gagttatacccttaacgtcagaattgaaaagaactactggtgtcttcgctgaaactgcatgggctggtgctgcatcctatttgctgttgtacatgcttgctagtcacatagttggctcgttctggtatttgctttctgtggaacgctatgatacatgctgggaaagagcttgttgtcataacacaacatgccaaactgatttcttgtactgcggcattcaaggcatgacagggtataatgcttggagcaatatcagagaatcggttttaaatggagcatgccctcgtagcggtgacaatacaccatttgattttggaattggcgcgcaggctttgtcatcaggcatagttttctcaatgaagattgtgactaaatattgctactgtttgtggtggggactccagaatttaagtacccttggacaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="98257" stop="101485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98557" g_stop="98663" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99538" g_stop="99842" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="412" r_length="305" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328">
            <donor d_prob="0.754" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101171" g_stop="101185" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="427" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E200304" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98557" e_stop="98663"/>
          <exon e_start="99538" e_stop="99842"/>
          <exon e_start="101171" e_stop="101185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCACGTAAGCTACTTATTAAGTTGCCGAAATGTTTGCTATCTGTTCTGCTAAGATAACTGTCCATTGCATTGTTTTGAAATGTAAATCTTCTTTTTTTCATTGGCATAATACATAAATGTGCCCTTTAATTTGGCTTCAAATCACATTCATGCCCTTCAACTTTGGATGTGCACAATTAGACTACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTTGTCTTACGTGGTGTTCTACGTGTGTTGTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCCTATTTGTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTATAGCCAAGTTTAGGGTTCAATATATGTATTATACCATTTTCTTTTGTGTAAAATTCTCTTCTTTGCGGAAGTGGAAGTTCTGGTTTCCTGCTGTATTCTGTCATTTTGCAGATCATTATGAGGGAAAATCTTTATTAATATGAAATCTCTGTTTATAGCATCTTCATCGTCTTTTAGATGGATTGAAGCTAAAACCGCATCCGTAAAGTAAAGTTAATTTGTAAATGAAACAATTATCTGAAAATAGGTGAATAACTTATCAACAACTATACATGTTGTATTGGTTTAAAAGAAATGCAGTGTACTCTCCGTTTTCTGGTTCAATTGCATGTATATGGAGTTTGCTGTTTCATTTTCCAACTAGAAAATGTTCACTTGTTCTGCAAAGCATATGCAAATTAGATGGTTTTTCGTTGAAATTTCGGATTGCTCATCTTTGCTAGAACATCGCAAAGGTTATCTCAAGGTGGAATTTCTGATTGTTCCTTGCTTCCATTCTCGTTGGTTCTTTTCAGATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAGGTGGCTTTACTCTTTAACATTATTCTTATCTCATTTGCTTTAGTCTCTCGTATCTTTCAGGGATTATGCCTAAGGAGTGAAAAACAAAGCATTAAAATTTTCCATCACATTACTACTAAATCCTTTTGTTGTTTGAAGTGTACATTTATGCCTAATTACTTCATTGTAGTTTACCATTTGCTCAACTATATGTTGATTAAACGTTATTTGAAAGTTGTATGAAAAGTCTGCATGCACTAGGTTTTGCATATTATGACTATTTCCTTTTGGCACTTTGTCATGCTCTCTATAGTATTTTGCCATAGCTTTTCCACTTCCGCCTTTCTTTTCGAACCGTATTGAATTGTTTTTCCTTGAGCCAATCTCTACATCCCAAGGTAGAGGTAATGTACACTTACACTCTACCCCTCCCCTATTCCCACTCGTCGGATTACACTGAATATGTTGTTGTTGCTGCTTGTTGGCGCTCACTTAGGTTCTATTCCTACCTGATAGCCTATAATTCAACGTGAACAAGTTTTTTTTTTTTATGTTAAGGTAACAAGATTATAGGGTGGTTATTAAAAATCAAAACCATATGGCTTTGCAGGAGTTACAGGGAGATATAAGACAAGCATCCATAGGTACTTTGGTCTAGTTGTAACTTGTATAAGTAAGAGCTCAACTTGTGATGTGTAAATTTGGTGCACGTTACAGGTTCAAATCCTACCGCAAATAAAAGCCTGGTATTTAAGTAGAAAACGATGGAGGGGAGAACCCATTATCCACCGAGTTTCGAACTGTGCACCAATGGCCTGCAGAGATTTATCTGTTACTAAGAAAATGTCAAGTTCCTAATTCAATTGTTCCAGAGTTCCAGTGTGACCATACTTTTTCCTGTTGAATACGAGAAGAGAAATTTCCTCCTAATCGTGTGCTATCATCGTATCTAAATGATTAATATTCCGATGGCCTTTTCGGTTCATATTGTCTATCAACTAATTGGTTTACGGAGGAGTAGTGTTTTCCTGTCACTGAATCATGACAGCCGATAATTAAATGTGAACACTAATTCAATATATTCCAGTATTATATGCTTCTTTTGGTTCATATTGTCTATTCACTATTTGGTTAGACCAATATTAGTTGTAGGATCTTCTTTTCGTTTTGTTCTTTACCCGGAGGACTGAAGAGGAAAAGAAGAATCGACTAAGCTGGAGTTCGGAAAACTAATTAAATGAATATTTACGTTATTTTCTTTTCATATGCTAAGGTATATCAATTGTTAATAAACCTTTTGGTGAACTTGTTCTAATAGCATTTCTTTTTTTCTTGTTTTGCTTGTGTAGTACCCTTGGACAGGG</genome_strand>
        <mrna_strand>GAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTTGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCATTCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGAGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATACACCATTTGATTTTGGAATTGGCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGATTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGGACAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705793" ref_strand="+" ref_description="SGN-E705793 [FA28AF06]">
      <seq>tcggttttaaatggagcatgccctcgtagcggtgacaatccaccatttgattttggaattttcgcgcaggctttgtcatcaggcatagttttctcaatgaagtttgtgactaaatattgctactgtttgtggtggggactccagaatttaagtacccttggacagggacttcaaactagcacatatcctggggagtctttattctctattgcactagcgatactcgggctcattctctttgcattgctgattggtaacatgcagacataccttcagtcacttactattcgacttgaagagatgagagttagaaggcgtgactcggaacaatggatgcatcacagattgcttccacaagaacttcgagaacgggtaaggggctatgatcagtacaagtggcaagaaacacgtggagtggatgaagaaaatatagttcagaatttgcccaaggatctcaggagggatatcaaacgtcatctttgtctggctctagtgaagagggtgcctctatttgcaaatatggaggagagattgcttgatgcaatttgtgagcatctaaaaccttgtttgtacatcgagaacacttaccttgttcgagaaggagatccagtggatgaaatgctctttgtgatacgagggcgccttgagagtgtgacaactgatggtgggagaagcggtttcttcaaccgcagcttgttaaaagaatccgacttctgtggagaagaacttcttacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="99391" stop="103902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99691" g_stop="99842" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101171" g_stop="101282" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="264" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102499" g_stop="102735" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="501" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103304" g_stop="103602" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="800" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E705793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99691" e_stop="99842"/>
          <exon e_start="101171" e_stop="101282"/>
          <exon e_start="102499" e_stop="102735"/>
          <exon e_start="103304" e_stop="103602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAGGTGGCTTTACTCTTTAACATTATTCTTATCTCATTTGCTTTAGTCTCTCGTATCTTTCAGGGATTATGCCTAAGGAGTGAAAAACAAAGCATTAAAATTTTCCATCACATTACTACTAAATCCTTTTGTTGTTTGAAGTGTACATTTATGCCTAATTACTTCATTGTAGTTTACCATTTGCTCAACTATATGTTGATTAAACGTTATTTGAAAGTTGTATGAAAAGTCTGCATGCACTAGGTTTTGCATATTATGACTATTTCCTTTTGGCACTTTGTCATGCTCTCTATAGTATTTTGCCATAGCTTTTCCACTTCCGCCTTTCTTTTCGAACCGTATTGAATTGTTTTTCCTTGAGCCAATCTCTACATCCCAAGGTAGAGGTAATGTACACTTACACTCTACCCCTCCCCTATTCCCACTCGTCGGATTACACTGAATATGTTGTTGTTGCTGCTTGTTGGCGCTCACTTAGGTTCTATTCCTACCTGATAGCCTATAATTCAACGTGAACAAGTTTTTTTTTTTTATGTTAAGGTAACAAGATTATAGGGTGGTTATTAAAAATCAAAACCATATGGCTTTGCAGGAGTTACAGGGAGATATAAGACAAGCATCCATAGGTACTTTGGTCTAGTTGTAACTTGTATAAGTAAGAGCTCAACTTGTGATGTGTAAATTTGGTGCACGTTACAGGTTCAAATCCTACCGCAAATAAAAGCCTGGTATTTAAGTAGAAAACGATGGAGGGGAGAACCCATTATCCACCGAGTTTCGAACTGTGCACCAATGGCCTGCAGAGATTTATCTGTTACTAAGAAAATGTCAAGTTCCTAATTCAATTGTTCCAGAGTTCCAGTGTGACCATACTTTTTCCTGTTGAATACGAGAAGAGAAATTTCCTCCTAATCGTGTGCTATCATCGTATCTAAATGATTAATATTCCGATGGCCTTTTCGGTTCATATTGTCTATCAACTAATTGGTTTACGGAGGAGTAGTGTTTTCCTGTCACTGAATCATGACAGCCGATAATTAAATGTGAACACTAATTCAATATATTCCAGTATTATATGCTTCTTTTGGTTCATATTGTCTATTCACTATTTGGTTAGACCAATATTAGTTGTAGGATCTTCTTTTCGTTTTGTTCTTTACCCGGAGGACTGAAGAGGAAAAGAAGAATCGACTAAGCTGGAGTTCGGAAAACTAATTAAATGAATATTTACGTTATTTTCTTTTCATATGCTAAGGTATATCAATTGTTAATAAACCTTTTGGTGAACTTGTTCTAATAGCATTTCTTTTTTTCTTGTTTTGCTTGTGTAGTACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAGGTAATCACCGAATGCTAGTAATGTAGCTTCTGCACTGACATAGCTTATAGAGATTGCTTGTCATTTTGTTACTAACATAATATTGTGCGAAAACTTCAGAAAGATCAGTTGCACGTGAGAGTTTACTGTTAAGTGGTTATGATACTGGTGCTTGATGAAAACGGAGCTCAAGACATTTGACAGTTTAGATAACGCACTTGGTGCAATCATTTAAAAAAATGCACTTTGTGTATTTCTTTCGGAAAAAATGAGTTAGGCATAATACATAATTAACACAATCAAACTTGGCCTTAGTTGGCAAGTAAACACTCCAACTTCGTGTATGCACATATCGACTCCTCAGCTCGTCTCCACTGTGTTAGTTGAGCACTCCTAACTTACAAAATGATCAGCTAGACACCTCGAAAATTTATGTGTCACATCACATCGGGTGTCAAGAGACACAGAGGAGACAAATTGGGGTTTGTTGCCAGTTGAAACCAAGTTGAGGTGTGTAGATGTGCACTCGCAAAGTTAGAGTTCTTACTTACTAGATGAGGCGATGTTTTAGGGTTTGTTTATGTATTTACGCCATTAGATAATTCCACTTTGTTTTAAGTGAAAAGTTCTTGCAAAATGTTGATATCATCTCAGCAGTGTCAAGTAAAGTGCTTCTCTCTCAGCAACAGTTAAGAGTTCACAGTAGTCATGAGACATACAGAGGGATTATTCATAATTTTTGAGATTGTGGTAAATGTCAAGCAATAGCATCTTTTAGACAATTCCAATAGAGGTTTAGGATCTTAAGATATGCCATCATAGAGTACTACACAGATATAAAGCTTTGTCGGATACCTCCTTGACATGATATTTTTATGTACGAGACCGGTTGCTGTTGTAGTGTTGTTTATTCTTCTTTTGGCTCCCATCTCTCGTTTCTTCCAAAATGATACTTAAAAAAAAAGTTTAAATTATGGAAGACTCTCACGAAAAGAAATTCTGAAGAAGATGCCAAGGGACAGAATTTTTGGATTACTTGCACTATGGCATCCGAGTAATGTATTCCTTTCGTTCGAGCAACCGACTCGCATGAAAATTACTTACACTATCAAAATCAAAACTGTTGTTCCACAATAAATTCATTTTATGATTTTCAGTTTCTTTGAAGTGTTTCTGATAATGGCATTTGTATCTATGGGAAATTGTTACTCAAGAGTTTGGTGTTTTGTTATCACAGACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGGGTAACTAAATTATATATTCCTGCTTTTTCGATAATATTTGTTTCTTCTGTTGCCTAGACCCTCCAAAAATGTTGCTGCACCAATGTCAGGTCCTCCAAAAATGCATAGCTCTTGGAGGACCCAACACACATCTGGTGATATTTATGAAGAGTCCGAGCAACATAGGTATCATTGTAGTCGTGGTACTGTCGTCGTGTGGTGCAGCAGAGTTGCTACCCCAACCTCACAAGTGGGGTCTGGGTAGGTTAAAGTGTAAGCACACCTTAACCCTACCGCGTGGAGGTAGAGAGTGTTTGCGAAAGACCCTCGGCTTAAGTGCAGCATATCAAAATTGCTGGAAAACGACAATGAAGAAAATATAGCAACTAATGATCTGGTCTTAGTAGTGTTCTTTCTTTTATTTCATGTTTTCCTAGTTACTTGCTACAATCCGATGTTATAATTCTTCTAAGAGTGAACGACCGAACATTCATTTTATGACTGGGACAAACGATTCTACAGCTGCTAAGCTTTACGTTATTGTCTTTTGCTAGTTTTACTTTACTAATATTCCATTGTTAATTTTCAGGTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGAC</genome_strand>
        <mrna_strand>TCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372656" ref_strand="+" ref_description="SGN-E372656 [TUS-31-E15]">
      <seq>tttattctctattgcactagcgatactcgggctcattctctttgcattgctgattggtaacatgcagacataccttcagtcacttactattcgacttgaagagatgagagttagaaggcgtgactcggaacaatggatgcatcacagattgcttccacaagaacttcgagaacgggtaaggggctatgatcagtacaagtggcaagaaacacgtggagtggatgaagaaaatatagttcagaatttgcccaaggatctcaggagggatatcaaacgtcatctttgtctggctctagtgaagagggtgcctctatttgcaaatatggaggagagattgcttgatgcaatttgtgagcatctaaaaccttgtttgtacatcgagaacacttaccttgttcgagaaggagatccagtggatgaaatgctctttgtgatacgagggcgccttgagagtgtgacaactgatggtgggagaagcggtttcttcaaccgcagcttgttaaaagaatccgacttctgtggagaagaacttcttacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="100916" stop="103995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101216" g_stop="101282" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102499" g_stop="102735" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="304" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103304" g_stop="103695" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="696" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E372656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101216" e_stop="101282"/>
          <exon e_start="102499" e_stop="102735"/>
          <exon e_start="103304" e_stop="103695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAGGTAATCACCGAATGCTAGTAATGTAGCTTCTGCACTGACATAGCTTATAGAGATTGCTTGTCATTTTGTTACTAACATAATATTGTGCGAAAACTTCAGAAAGATCAGTTGCACGTGAGAGTTTACTGTTAAGTGGTTATGATACTGGTGCTTGATGAAAACGGAGCTCAAGACATTTGACAGTTTAGATAACGCACTTGGTGCAATCATTTAAAAAAATGCACTTTGTGTATTTCTTTCGGAAAAAATGAGTTAGGCATAATACATAATTAACACAATCAAACTTGGCCTTAGTTGGCAAGTAAACACTCCAACTTCGTGTATGCACATATCGACTCCTCAGCTCGTCTCCACTGTGTTAGTTGAGCACTCCTAACTTACAAAATGATCAGCTAGACACCTCGAAAATTTATGTGTCACATCACATCGGGTGTCAAGAGACACAGAGGAGACAAATTGGGGTTTGTTGCCAGTTGAAACCAAGTTGAGGTGTGTAGATGTGCACTCGCAAAGTTAGAGTTCTTACTTACTAGATGAGGCGATGTTTTAGGGTTTGTTTATGTATTTACGCCATTAGATAATTCCACTTTGTTTTAAGTGAAAAGTTCTTGCAAAATGTTGATATCATCTCAGCAGTGTCAAGTAAAGTGCTTCTCTCTCAGCAACAGTTAAGAGTTCACAGTAGTCATGAGACATACAGAGGGATTATTCATAATTTTTGAGATTGTGGTAAATGTCAAGCAATAGCATCTTTTAGACAATTCCAATAGAGGTTTAGGATCTTAAGATATGCCATCATAGAGTACTACACAGATATAAAGCTTTGTCGGATACCTCCTTGACATGATATTTTTATGTACGAGACCGGTTGCTGTTGTAGTGTTGTTTATTCTTCTTTTGGCTCCCATCTCTCGTTTCTTCCAAAATGATACTTAAAAAAAAAGTTTAAATTATGGAAGACTCTCACGAAAAGAAATTCTGAAGAAGATGCCAAGGGACAGAATTTTTGGATTACTTGCACTATGGCATCCGAGTAATGTATTCCTTTCGTTCGAGCAACCGACTCGCATGAAAATTACTTACACTATCAAAATCAAAACTGTTGTTCCACAATAAATTCATTTTATGATTTTCAGTTTCTTTGAAGTGTTTCTGATAATGGCATTTGTATCTATGGGAAATTGTTACTCAAGAGTTTGGTGTTTTGTTATCACAGACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGGGTAACTAAATTATATATTCCTGCTTTTTCGATAATATTTGTTTCTTCTGTTGCCTAGACCCTCCAAAAATGTTGCTGCACCAATGTCAGGTCCTCCAAAAATGCATAGCTCTTGGAGGACCCAACACACATCTGGTGATATTTATGAAGAGTCCGAGCAACATAGGTATCATTGTAGTCGTGGTACTGTCGTCGTGTGGTGCAGCAGAGTTGCTACCCCAACCTCACAAGTGGGGTCTGGGTAGGTTAAAGTGTAAGCACACCTTAACCCTACCGCGTGGAGGTAGAGAGTGTTTGCGAAAGACCCTCGGCTTAAGTGCAGCATATCAAAATTGCTGGAAAACGACAATGAAGAAAATATAGCAACTAATGATCTGGTCTTAGTAGTGTTCTTTCTTTTATTTCATGTTTTCCTAGTTACTTGCTACAATCCGATGTTATAATTCTTCTAAGAGTGAACGACCGAACATTCATTTTATGACTGGGACAAACGATTCTACAGCTGCTAAGCTTTACGTTATTGTCTTTTGCTAGTTTTACTTTACTAATATTCCATTGTTAATTTTCAGGTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTT</genome_strand>
        <mrna_strand>TTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290614" ref_strand="+" ref_description="SGN-E290614 [cLES-20-D18]">
      <seq>tttattctctattgcactagcgatactcgggctcattctctttgcattgctgattggtaacatgcagacataccttcagtcacttactattcgacttgaagagatgagagttagaaggcgtgactcggaacaatggatgcatcacagattgcttccacaagaacttcgagaacgggtaaggggctatgatcagtacaagtggcaagaaacacgtggagtggatgaagaaaatatagttcagaatttgcccaaggatctcaggagggatatcaaacgtcatctttgtctggctctagtgaagagggtgcctctatttgcaaatatggaggagagattgcttgatgcaatttgtgagcatctaaaaccttgtttgtacatcgagaacacttaccttgttcgagaaggagatccagtggatgaaatgctctttgtgatacgagggcgccttgagagtgtgacaactgatggtgggagaagcggtttcttcaaccgcagcttgttaaaagaatccgacttctgtggagaagaacttcttacttgggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="100916" stop="103845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101216" g_stop="101282" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102499" g_stop="102735" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="304" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103304" g_stop="103545" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="546" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E290614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101216" e_stop="101282"/>
          <exon e_start="102499" e_stop="102735"/>
          <exon e_start="103304" e_stop="103545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAGGTAATCACCGAATGCTAGTAATGTAGCTTCTGCACTGACATAGCTTATAGAGATTGCTTGTCATTTTGTTACTAACATAATATTGTGCGAAAACTTCAGAAAGATCAGTTGCACGTGAGAGTTTACTGTTAAGTGGTTATGATACTGGTGCTTGATGAAAACGGAGCTCAAGACATTTGACAGTTTAGATAACGCACTTGGTGCAATCATTTAAAAAAATGCACTTTGTGTATTTCTTTCGGAAAAAATGAGTTAGGCATAATACATAATTAACACAATCAAACTTGGCCTTAGTTGGCAAGTAAACACTCCAACTTCGTGTATGCACATATCGACTCCTCAGCTCGTCTCCACTGTGTTAGTTGAGCACTCCTAACTTACAAAATGATCAGCTAGACACCTCGAAAATTTATGTGTCACATCACATCGGGTGTCAAGAGACACAGAGGAGACAAATTGGGGTTTGTTGCCAGTTGAAACCAAGTTGAGGTGTGTAGATGTGCACTCGCAAAGTTAGAGTTCTTACTTACTAGATGAGGCGATGTTTTAGGGTTTGTTTATGTATTTACGCCATTAGATAATTCCACTTTGTTTTAAGTGAAAAGTTCTTGCAAAATGTTGATATCATCTCAGCAGTGTCAAGTAAAGTGCTTCTCTCTCAGCAACAGTTAAGAGTTCACAGTAGTCATGAGACATACAGAGGGATTATTCATAATTTTTGAGATTGTGGTAAATGTCAAGCAATAGCATCTTTTAGACAATTCCAATAGAGGTTTAGGATCTTAAGATATGCCATCATAGAGTACTACACAGATATAAAGCTTTGTCGGATACCTCCTTGACATGATATTTTTATGTACGAGACCGGTTGCTGTTGTAGTGTTGTTTATTCTTCTTTTGGCTCCCATCTCTCGTTTCTTCCAAAATGATACTTAAAAAAAAAGTTTAAATTATGGAAGACTCTCACGAAAAGAAATTCTGAAGAAGATGCCAAGGGACAGAATTTTTGGATTACTTGCACTATGGCATCCGAGTAATGTATTCCTTTCGTTCGAGCAACCGACTCGCATGAAAATTACTTACACTATCAAAATCAAAACTGTTGTTCCACAATAAATTCATTTTATGATTTTCAGTTTCTTTGAAGTGTTTCTGATAATGGCATTTGTATCTATGGGAAATTGTTACTCAAGAGTTTGGTGTTTTGTTATCACAGACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGGGTAACTAAATTATATATTCCTGCTTTTTCGATAATATTTGTTTCTTCTGTTGCCTAGACCCTCCAAAAATGTTGCTGCACCAATGTCAGGTCCTCCAAAAATGCATAGCTCTTGGAGGACCCAACACACATCTGGTGATATTTATGAAGAGTCCGAGCAACATAGGTATCATTGTAGTCGTGGTACTGTCGTCGTGTGGTGCAGCAGAGTTGCTACCCCAACCTCACAAGTGGGGTCTGGGTAGGTTAAAGTGTAAGCACACCTTAACCCTACCGCGTGGAGGTAGAGAGTGTTTGCGAAAGACCCTCGGCTTAAGTGCAGCATATCAAAATTGCTGGAAAACGACAATGAAGAAAATATAGCAACTAATGATCTGGTCTTAGTAGTGTTCTTTCTTTTATTTCATGTTTTCCTAGTTACTTGCTACAATCCGATGTTATAATTCTTCTAAGAGTGAACGACCGAACATTCATTTTATGACTGGGACAAACGATTCTACAGCTGCTAAGCTTTACGTTATTGTCTTTTGCTAGTTTTACTTTACTAATATTCCATTGTTAATTTTCAGGTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACT</genome_strand>
        <mrna_strand>TTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290778" ref_strand="+" ref_description="SGN-E290778 [cLET-10-C19]">
      <seq>cggaacaatggatgcatcacagattgcttccacaagaacttcgagaacgggtaaggggctatgatcagtacaagtggcaagaaacacgtggagtggatgaagaaaatatagttcagaatttgcccaaggatctcaggagggatatcaaacgtcatctttgtctggctctagtgaagagggtgcctctatttgcaaatatggaggagagattgcttgatgcaatttgtgagcatctaaaaccttgtttgtacatcgagaacacttaccttgttcgagaaggagatccagtggatgaaatgctctttgtgatacgagggcgccttgagagtgtgacaactgatggtgggagaagcggtttcttcaaccgcagcttgttaaaagaatccgacttctgtggagaagaacttcttacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgttccgtttctactcacagcactggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="102257" stop="104022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102557" g_stop="102735" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103304" g_stop="103722" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="598" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E290778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102557" e_stop="102735"/>
          <exon e_start="103304" e_stop="103722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGGGTAACTAAATTATATATTCCTGCTTTTTCGATAATATTTGTTTCTTCTGTTGCCTAGACCCTCCAAAAATGTTGCTGCACCAATGTCAGGTCCTCCAAAAATGCATAGCTCTTGGAGGACCCAACACACATCTGGTGATATTTATGAAGAGTCCGAGCAACATAGGTATCATTGTAGTCGTGGTACTGTCGTCGTGTGGTGCAGCAGAGTTGCTACCCCAACCTCACAAGTGGGGTCTGGGTAGGTTAAAGTGTAAGCACACCTTAACCCTACCGCGTGGAGGTAGAGAGTGTTTGCGAAAGACCCTCGGCTTAAGTGCAGCATATCAAAATTGCTGGAAAACGACAATGAAGAAAATATAGCAACTAATGATCTGGTCTTAGTAGTGTTCTTTCTTTTATTTCATGTTTTCCTAGTTACTTGCTACAATCCGATGTTATAATTCTTCTAAGAGTGAACGACCGAACATTCATTTTATGACTGGGACAAACGATTCTACAGCTGCTAAGCTTTACGTTATTGTCTTTTGCTAGTTTTACTTTACTAATATTCCATTGTTAATTTTCAGGTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAAC</genome_strand>
        <mrna_strand>CGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311492" ref_strand="+" ref_description="SGN-E311492 [cLEZ-18-L14]">
      <seq>taaaaccttgtttgtacatcgagaacacttaccttgttcgagaaggagatccagtggatgaaatgctctttgtgatacgagggcgccttgagagtgtgacaactgatggtgggagaagcggtttcttcaaccgcagcttgttaaaagaatccgacttctgtggagaagaacttcttacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgttccgtttctactcacagcactggagaacttgggctgcttgcttcatccaagcagcatggaggcgtttcacgaaaaggaaacttatggaactacaaagaaaagaggatgaagaagcagaagcgttggccggggccagtagtaactcgggtggagcttcttttagtattggggcaacgttcttggcatcgagatttgcagctaatgctctccgaggcgttcataagaatcgaaatctcaagtctgctaaggagcttatgaagctgcaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="103059" stop="104265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103359" g_stop="103965" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E311492" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103359" e_stop="103965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACC</genome_strand>
        <mrna_strand>TAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAAGGAGCTTATGAAGCTGCAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546195" ref_strand="+" ref_description="SGN-E546195 [TUS-69-G24](-)">
      <seq>agagtgtgacaactgatggtggagaagcggttttttcaaccgcagcttgttaaaagaatccgacttctgtgangaagaacttcttacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgttccgtttctactcacagcactggagaacttgggctgcttgcttcatccaagcagcatggaggcgtttcacgaaaaggaaacttatggaactacaaagaaaagaggatgaagaagcagaagcgttggccggggccagtagtaactcgggtggagcttcttttagtattggggcaacgttcttggcatcgagatttgcagctaatgctctccgaggcgttcataagaatcgaaatctcaagtctgctagggagcttatgaagctgcaaaaacctccagaacctgatttcagtgaagatactgactgaattttgtatgcttaagctttgcaaaaagcttgatgtataatttatgtttattagtcttattgctacatatttatgtaagagtttaacttctttaaactgatactgattgtgtaaataaatatttacatttatcatctcgcctaaaaggtaactatgggtagctgcccgtgataagtagaaggcaccttttgtttcaatttatttgtctgttttaaattgatacaacgtttgtaaaaaagatttttaaattttgtggtattaaactaaagatacgtaaaatgtatcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="103149" stop="104450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103449" g_stop="104285" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="839" polyA_stop="852"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E546195" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103449" e_stop="104285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGA--CTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCATA</genome_strand>
        <mrna_strand>AGAGTGTGACAACTGATGGT-GGAGAAGCGGTTTTTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGANGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGGCACCTTTTGTTTCAATTTATTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGATTTTTAAATTTTGTGGTATTAAACTAAAGATACGTAAAATGTATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372655" ref_strand="+" ref_description="SGN-E372655 [TUS-31-E15](-)">
      <seq>tacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgttccgtttctactcacagcactggagaacttgggctgcttgcttcatccaagcagcatggaggcgtttcacgaaaaggaaacttatggaactacaaagaaaagaggatgaagaagcagaagcgttggccggggccagtagtaactcgggtggagcttcttttagtattggggcaacgttcttggcatcgagatttgcagctaatgctctccgaggcgttcataagaatcgaaatctcaagtctgctagggagcttatgaagctgcaaaaacctccagaacctgatttcagtgaagatactgactgaattttgtatgcttaagctttgcaaaaagcttgatgtataatttatgtttattagtcttattgctacatatttatgtaagagtttaacttctttaaactgatactgattgtgtaaataaatatttacatttatcatctcgcctaaaaggtaactatgggtagctgcccgtgataagtagaagacacctttcgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="103234" stop="104450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103534" g_stop="104195" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="678"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E372655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103534" e_stop="104195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCA</genome_strand>
        <mrna_strand>TACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712866" ref_strand="+" ref_description="SGN-E712866 [FB06AB09]">
      <seq>ccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgttccgtttctactcacagcactggagaacttgggctgcttgcttcatccaagcagcatggaggcgtttcacgaaaaggaaacttatggaactacaaagaaaagaggatgaagaagcagaagcgttggccggggccagtagtaactcgggtggagcttcttttagtattggggcaacgttcttggcatcgagatttgcagctaatgctctccgaggcgttcataagaatcgaaatctcaagtctgctagggagcttatgaagctgcaaaaacctccagaacctgatttcagtgaagatactgactgaattttgtatgcttaagctttgcaaaaagcttgatgtataatttatgtttattagtcttattgctacatatttatgtaagagtttaacttctttaaactgatactgattgtgtaaataaatatttacatttatcatctcgcctaaaaggtaactatgggtagctgcccgtgataagtagaagacacctttcgtttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="103250" stop="104450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103550" g_stop="104195" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="657"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E712866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103550" e_stop="104195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCA</genome_strand>
        <mrna_strand>CCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200305" ref_strand="+" ref_description="SGN-E200305 [cLEC-1-A11](-)">
      <seq>aaagaaaagaggatgaagaagcagaagcgttggccggggccagtagtaactcgggtggagcttcttttagtattggggcaacgttcttggcatcgagatttgcagctaatgctctccgaggcgttcataagaatcgaaatctcaagtctgctagggagcttatgaagctgcaaaaacctccagaacctgatttcagtgaagatactgactgaattttgtatgcttaagctttgcaaaaagcttgatgtataatttatgtttattagtcttattgctacatatttatgtaagagtttaaattctttaaactgatactgattgtataaataaatatttacatttatcatctcgcctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="103488" stop="104445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103788" g_stop="104145" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-E200305" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103788" e_stop="104145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAA</genome_strand>
        <mrna_strand>AAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAAATTCTTTAAACTGATACTGATTGTATAAATAAATATTTACATTTATCATCTCGCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>163</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9120" PGL_stop="8202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9120" e_stop="8202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="9120" e_stop="8202" e_length="919"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9120" stop="8466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9119" stop="8383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9119" stop="8528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9114" stop="8202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9113" stop="8713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9109" stop="8710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9108" stop="8586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8749" stop="8212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8670" stop="8211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8613" stop="8211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAATTATGAATG</gDNA_template>
            <first_frame> S  Q  T  R  H  *  E  I  L  S  N  L  L  L  L  L  S  Q  L  *  N  N  K  K  W  R  L  L  H  G  D  Q  P  D  R  C  S  V  H  Y  L  P  P  A  D  F  T  H  R  H  L  E  L  R  R  L  L  L  H  R  S  G  L  H  W  T  V  K  L  P  Q  A  G  L  F  P  *  *  T  G  R  K  H  W  L  L  L  R  R  R  G  V  C  V  R  R  R  I  I  Q  V  R  S  V  V  V  C  I  R  K  W  I  F  D  G  V  V  V  L  A  K  R  R  R  I  R  F  D  C  I  *  G  D  R  R  *  R  I  R  *  C  E  S  E  L  L  K  V  S  L  L  K  E  L  *  R  L  *  F  V  L  L  R  I  N  S  V  A  V  P  I  S  N  A  D  L  V  D  F  P  L  F  P  V  P  V  T  H  K  S  V  I  L  S  L  E  I  S  F  N  N  A  C  C  A  D  S  *  R  R  S  G  R  I  S  I  V  S  G  A  G  D  T  *  D  V  N  R  A  V  R  S  L  L  F  C  *  M  L  T  S  A  I  D  V  W  P  *  S  N  V  S  C  N  E  V  A  A  A  N  W  S  V  H  G  G  G  R  N  G  T  T  F  L  C  T  P  V  T  K  T  L  G  S  I  C  L  I  V  *  N  T  *  R  K  L  *  N  H  S  V  L  L  I  M  N  </first_frame>
            <second_frame>  A  K  R  G  T  K  K  Y  S  P  I  F  F  F  F  S  L  N  C  K  T  T  K  N  G  G  F  C  T  A  I  N  R  T  G  A  P  F  I  I  S  R  R  Q  I  L  L  I  V  I  *  N  F  V  V  F  C  F  I  D  P  V  Y  T  G  P  *  N  F  P  K  P  V  Y  F  R  N  E  P  A  E  N  T  G  F  F  S  E  E  E  V  Y  V  F  A  D  E  S  S  R  F  V  P  L  *  Y  A  *  E  N  G  Y  S  T  E  *  *  Y  *  P  N  G  V  E  F  D  S  I  A  Y  E  A  I  G  D  D  E  F  V  S  A  N  R  N  C  *  R  *  A  C  *  K  S  F  S  G  F  D  S  S  F  F  A  S  T  A  S  P  F  R  F  P  T  P  T  *  S  T  F  R  Y  F  Q  F  R  *  L  I  S  Q  L  F  F  L  *  K  F  H  S  T  T  R  A  A  P  I  L  S  A  D  L  A  G  S  P  L  F  P  V  P  V  I  R  R  T  *  I  E  L  L  E  V  C  F  S  V  E  C  *  P  Q  Q  S  M  S  G  R  E  V  T  S  A  A  T  R  W  R  R  R  T  G  V  Y  T  V  E  V  G  T  E  Q  L  F  C  V  L  R  *  P  K  R  *  D  P  Y  V  *  *  S  K  I  H  E  E  N  Y  K  I  I  Q  F  S  *  L  *  M </second_frame>
            <third_frame>   P  N  A  A  L  R  N  T  L  Q  S  S  S  S  S  L  S  T  V  K  Q  Q  K  M  A  A  S  A  R  R  S  T  G  P  V  L  R  S  L  S  P  A  G  R  F  Y  S  S  S  S  R  T  S  S  S  S  A  S  S  I  R  F  T  L  D  R  E  T  S  P  S  R  S  I  S  V  M  N  R  Q  K  T  L  A  S  S  Q  K  K  R  C  M  C  S  P  T  N  H  P  G  S  F  R  C  S  M  H  K  K  M  D  I  R  R  S  S  S  T  S  Q  T  A  S  N  S  I  R  L  H  M  R  R  S  A  M  T  N  S  L  V  R  I  G  T  V  E  G  E  L  V  K  R  A  L  A  A  L  I  R  P  S  S  H  Q  Q  R  R  R  S  D  F  Q  R  R  P  S  R  L  S  V  I  S  S  S  G  D  S  *  V  S  Y  S  F  S  R  N  F  I  Q  Q  R  V  L  R  R  F  L  A  Q  I  W  P  D  L  H  C  F  R  C  R  *  Y  V  G  R  E  *  S  C  *  K  F  A  F  L  L  N  A  D  L  S  N  R  C  L  A  V  K  *  R  Q  L  Q  R  G  G  G  G  E  L  E  C  T  R  W  R  S  E  R  N  N  F  F  V  Y  S  G  D  Q  N  V  R  I  H  M  S  N  S  L  K  Y  M  K  K  I  I  K  S  F  S  S  P  N  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9118" stop="8555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNAALRNTLQSSSSSLSTVKQQKMAASARRSTGPVLRSLSPAGRFYSSSSRTSSSSASSIRFTLDRETSPSRSISVMNRQKTLASSQKKRCMCSPTNHPGSFRCSMHKKMDIRRSSSTSQTASNSIRLHMRRSAMTNSLVRIGTVEGELVKRALAALIRPSSHQQRRRSDFQRRPSRLSVISSSGDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16810" PGL_stop="24766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16810" e_stop="16866"/>
            <exon e_start="18224" e_stop="18339"/>
            <exon e_start="18996" e_stop="19121"/>
            <exon e_start="19740" e_stop="19842"/>
            <exon e_start="20086" e_stop="20158"/>
            <exon e_start="20988" e_stop="21053"/>
            <exon e_start="21162" e_stop="21279"/>
            <exon e_start="21984" e_stop="22145"/>
            <exon e_start="22701" e_stop="22826"/>
            <exon e_start="23104" e_stop="23229"/>
            <exon e_start="23477" e_stop="23656"/>
            <exon e_start="24686" e_stop="24766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.301" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.599" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.851" e_score="0.992"/>
          <exon-intron don_prob="0.397" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.944"/>
          <exon-only e_score="0.790"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16810" e_stop="16866" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.895">
            <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18224" e_stop="18339" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.907">
            <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18996" e_stop="19121" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="0.815">
            <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19740" e_stop="19842" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.599" acc_prob="0.988">
            <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20086" e_stop="20158" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.978">
            <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20988" e_stop="21053" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.679" acc_prob="0.974">
            <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21162" e_stop="21279" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.946" acc_prob="0.832">
            <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21984" e_stop="22145" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.969" acc_prob="0.851">
            <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="22701" e_stop="22826" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.851">
            <gDNA_intron_boundary i_start="22827" i_stop="23103" i_length="277"/>
          </intron>
          <exon e_serial="10" e_score="0.960">
            <gDNA_exon_boundary e_start="23104" e_stop="23229" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.397" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23230" i_stop="23476" i_length="247"/>
          </intron>
          <exon e_serial="11" e_score="0.944">
            <gDNA_exon_boundary e_start="23477" e_stop="23656" e_length="180"/>
          </exon>
          <intron i_serial="11" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23657" i_stop="24685" i_length="1029"/>
          </intron>
          <exon e_serial="12" e_score="0.790">
            <gDNA_exon_boundary e_start="24686" e_stop="24766" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16810" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
              <exon start="21984" stop="22145"/>
              <exon start="22701" stop="22722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16810" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
              <exon start="21984" stop="22145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16810" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16811" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16823" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
              <exon start="21984" stop="22054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16823" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16831" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
              <exon start="21984" stop="22128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19050" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20106" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
              <exon start="21984" stop="22145"/>
              <exon start="22701" stop="22826"/>
              <exon start="23104" stop="23128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21984" stop="22145"/>
              <exon start="22701" stop="22826"/>
              <exon start="23104" stop="23229"/>
              <exon start="23477" stop="23656"/>
              <exon start="24686" stop="24766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22021" stop="22145"/>
              <exon start="22701" stop="22826"/>
              <exon start="23104" stop="23122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595848" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG : GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG : GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT : GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG : CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG : ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG : TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG : CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG : CTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTGTTAAAGGTTCGACAAAGGAGAAG : GTAGTCAGAGTTGTCATCTTGACTCTTAGGAATTTGCTTGCCAGAGGGTCATTTGGTTCTCAAATGGTAGACCTGGATGTGCTGCAAATTGTACAGAGCTTGAAAGCGCAGGCCTGGAGTGATGAG : GACCTTTTGGACGCTCTGAATCAACTTGAAGGAGGATTGAAGGCCAACATCAAAAAAATGAGTTCGTACGATAAGTACAAGCAGGAAGTCCTACTTGGCAGTCTTGATTGGTCCCCCATGCATAAAGATCCTCTATTCTGGAAGGAAAATATAACTTGTTTCGAGGAGAACGGATTTCAG : ATTTTGAGAGTGCTCATGACGATTTTGGATACATCAAATGATTCAAGGACACTTGCTGTAGCTTGCTATGACTTGTCACAG</gDNA_template>
            <first_frame> L  F  Q  I  S  T  P  I  C  G  T  S  V  H  H  H  L  H  M  :  V  E  G  N  N  R  F  *  I  F  L  F  H  *  R  I  S  D  F  Q  I  G  R  I  *  S  Q  *  Q  L  K  T  V  S  S  P  P  S  R :   F  *  G  G  I  F  H  G  R  L  T  *  P  R  S  *  S  V  E  Q  I  F  S  C  *  G  V  M  I  K  W  L  K  A  T  N  L  S  C  W  I  M :   T  V  Q  L  I  S  V  F  L  L  L  L  Y  E  I  S  S  R  T  K  P  W  N  M  F  *  L  *  L  M  K  C  L  Q  :  Q  T  Q  E  E  R  D  Y  S  M  I  A  L  Y  P  M  K  T  L  M  N  L  S  S   : D  F  F  G  K  V  I  G  S  S  K  R  R  A  V  R  F  S  L  *  *  *   : V  P  G  Q  M  F  R  M  L  L  M  Q  M  E  M  P  R  V  Q  R  G  H  S  P  L  W  K  I  F  *  M  A  *  *  I  G  Y  A  H  S :   *  E  S  L  L  I  L  V  V  A  F  P  L  Q  S  I  V  L  Q  H  C  *  R  S  L  L  F  D  V  H  L  F  N  L  M  E  *  S  C  S  F  L  *  F  H  Q  H  L  L  S  S  P  F  S :   F  S  T  R  H  V  Y  A  F  G  F  C  L  T  M  N  L  Q  L  S  T  W  L  L  L  G  P  Y  L  D  *  L  K  L  L  K  V  R  Q  R  R  R :   *  S  E  L  S  S  *  L  L  G  I  C  L  P  E  G  H  L  V  L  K  W  *  T  W  M  C  C  K  L  Y  R  A  *  K  R  R  P  G  V  M  R :   T  F  W  T  L  *  I  N  L  K  E  D  *  R  P  T  S  K  K  *  V  R  T  I  S  T  S  R  K  S  Y  L  A  V  L  I  G  P  P  C  I  K  I  L  Y  S  G  R  K  I  *  L  V  S  R  R  T  D  F  R :   F  *  E  C  S  *  R  F  W  I  H  Q  M  I  Q  G  H  L  L  *  L  A  M  T  C  H   </first_frame>
            <second_frame>  S  F  R  F  Q  L  P  S  V  A  P  L  F  I  T  I  F  I  W :   L  K  E  T  T  D  S  E  F  S  C  F  I  R  G  Y  Q  I  F  R  S  E  E  Y  N  H  N  D  N  *  K  R  *  A  H  H  R  A   : G  F  E  E  G  Y  S  M  G  D  L  H  D  H  E  A  D  Q  W  N  R  S  S  A  V  E  A  L  *  *  N  G  *  K  L  Q  I  S  V  A  G  *   : *  R  S  S  L  Y  P  C  F  C  Y  Y  F  T  R  Y  L  Q  G  R  N  R  G  I  C  F  S  F  N  *  *  N  A  Y  S :   K  P  K  K  S  E  I  I  P  *  *  L  F  I  Q  *  R  H  L  *  T  F  P  Q  :  I  S  L  E  R  *  L  V  H  P  R  E  E  L  *  D  S  L  F  D  S  E  :  C  Q  A  K  C  S  E  C  C  *  C  K  W  R  C  L  E  F  K  E  D  T  H  H  Y  G  K  Y  S  E  W  P  S  R  L  A  M  L  T   : A  E  K  A  F  S  S  *  L  *  H  S  L  C  N  Q  L  S  C  N  T  V  E  G  A  C  C  S  T  F  I  C  S  I  *  W  S  E  A  A  H  S  F  N  F  T  S  I  Y  S  A  V  H  S   : A  S  L  R  D  M  S  M  R  L  A  S  V  L  L  *  T  C  N  *  V  L  G  Y  F  *  G  P  T  S  I  D  *  S  C  *  R  F  D  K  G  E   : G  S  Q  S  C  H  L  D  S  *  E  F  A  C  Q  R  V  I  W  F  S  N  G  R  P  G  C  A  A  N  C  T  E  L  E  S  A  G  L  E  *  *   : G  P  F  G  R  S  E  S  T  *  R  R  I  E  G  Q  H  Q  K  N  E  F  V  R  *  V  Q  A  G  S  P  T  W  Q  S  *  L  V  P  H  A  *  R  S  S  I  L  E  G  K  Y  N  L  F  R  G  E  R  I  S   : D  F  E  S  A  H  D  D  F  G  Y  I  K  *  F  K  D  T  C  C  S  L  L  *  L  V  T  </second_frame>
            <third_frame>   L  S  D  F  N  S  H  L  W  H  L  C  S  S  P  S  S  Y   : G  *  R  K  Q  Q  I  L  N  F  L  V  S  L  E  D  I  R  F  S  D  R  K  N  I  I  T  M  T  I  E  N  G  E  L  T  T  E  Q  :  V  L  R  R  D  I  P  W  E  T  Y  M  T  T  K  L  I  S  G  T  D  L  Q  L  L  R  R  Y  D  K  M  A  E  S  Y  K  S  Q  L  L  D  N  :  D  G  P  A  Y  I  R  V  F  V  T  T  L  R  D  I  F  K  D  E  T  V  E  Y  V  L  A  L  I  D  E  M  L  T   : A  N  P  R  R  A  R  L  F  H  D  S  S  L  S  N  E  D  T  Y  E  P  F  L  R :   F  L  W  K  G  N  W  F  I  Q  E  K  S  C  K  I  L  S  L  I  V  S :   A  R  P  N  V  Q  N  V  A  D  A  N  G  D  A  S  S  S  K  R  T  L  T  T  M  E  N  I  L  N  G  L  V  D  W  L  C  S  Q  :  L  R  K  P  S  H  P  S  C  S  I  P  S  A  I  N  C  L  A  T  L  L  K  E  P  V  V  R  R  S  F  V  Q  S  D  G  V  K  L  L  I  P  L  I  S  P  A  S  T  Q  Q  S  I  Q  :  L  L  Y  E  T  C  L  C  V  W  L  L  S  Y  Y  E  P  A  I  E  Y  L  A  T  S  R  A  L  P  R  L  I  E  V  V  K  G  S  T  K  E  K  :  V  V  R  V  V  I  L  T  L  R  N  L  L  A  R  G  S  F  G  S  Q  M  V  D  L  D  V  L  Q  I  V  Q  S  L  K  A  Q  A  W  S  D  E  :  D  L  L  D  A  L  N  Q  L  E  G  G  L  K  A  N  I  K  K  M  S  S  Y  D  K  Y  K  Q  E  V  L  L  G  S  L  D  W  S  P  M  H  K  D  P  L  F  W  K  E  N  I  T  C  F  E  E  N  G  F  Q  :  I  L  R  V  L  M  T  I  L  D  T  S  N  D  S  R  T  L  A  V  A  C  Y  D  L  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18229" stop="18339"/>
                    <exon start="18996" stop="19121"/>
                    <exon start="19740" stop="19842"/>
                    <exon start="20086" stop="20158"/>
                    <exon start="20988" stop="21053"/>
                    <exon start="21162" stop="21279"/>
                    <exon start="21984" stop="22145"/>
                    <exon start="22701" stop="22826"/>
                    <exon start="23104" stop="23229"/>
                    <exon start="23477" stop="23656"/>
                    <exon start="24686" stop="24766"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1272</number_coding_nucleotides>
                  <number_encoded_amino_acids>424</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQQILNFLVSLEDIRFSDRKNIITMTIENGELTTEQVLRRDIPWETYMTTKLISGTDLQLLRRYDKMAESYKSQLLDNDGPAYIRVFVTTLRDIFKDETVEYVLALIDEMLTANPRRARLFHDSSLSNEDTYEPFLRFLWKGNWFIQEKSCKILSLIVSARPNVQNVADANGDASSSKRTLTTMENILNGLVDWLCSQLRKPSHPSCSIPSAINCLATLLKEPVVRRSFVQSDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRALPRLIEVVKGSTKEKVVRVVILTLRNLLARGSFGSQMVDLDVLQIVQSLKAQAWSDEDLLDALNQLEGGLKANIKKMSSYDKYKQEVLLGSLDWSPMHKDPLFWKENITCFEENGFQILRVLMTILDTSNDSRTLAVACYDLSQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30757" PGL_stop="31746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30757" e_stop="31746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="30757" e_stop="31746" e_length="990"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30757" stop="31459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30793" stop="31324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30914" stop="31668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30982" stop="31746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31033" stop="31664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGTTCTTCTCTTATTTTCTTCCAATGTCTACAAACTCATCAAACAATGTTGTTCACCTTGATGAAGTGATTGTAGCCATGGTGCCATTTCCTGATTTTAGCCATCTCAATCAGCTCTACGTTGTTGCTCGTTTCATCACTTCTCATAATATACCAGTACACTTCATCTGCCTTGCTGATCGTAACCAAGATTTGAAACATCGCGTCCAAGGTGGGCTATCTGCCTCAAACATCCATTTTCATGACCTTTTGGTACCTTCTTCTCTTGACGCGGGTAATGGTTTGCCTTCGATTGTTATATTTATGAAAAAGCTCGTCGAGCCTATTAGAAGAACGTGTATTGATATCTCTACCAACGCGAAGAGATTGGTTATAATTCATGATTCCATAATGATGGATCATATAAGGGATGTTCATTCATTGATCCCGAACGTGGAGTCTTATAAGTTCCACGCCATTTCAACTTTTGCAATATACTCTGGGCTCCGACAAAGTATTGATCACTTAGTTGTTGATGATGATGATGATGATCATGAAAAAATGATCAAACAAATGCACGATGAATTTCCGTTGTTGGATAGATGTTGTGGACCTTATGCAGCCGCGAGTTAGAAAAGAACATGAATGGAAGCTCAACTCGGGAAATATCATCAACTCGTGCAGAGAAGTCGAAAGTAAGTACGTGGATTTACTTGCACATACAACAGACAGGCAGTATTGGGCTGTTGGTCCAGTTCATATGTTGCTAGAATCACGCGACTCTAGCAACATGACGAAGAATGAGTGTATAGAATTTCTAGACAAGCAAGACGTTAACTCAGTAATATACGTCTCGTTTGGAACGACTACTACTTTAACACAAGAGCAAGTCAATGAGCTCGCGTTTGGTTTAGAACAGAGCAATCGTAACTTCATTTGGGTACTAAGACAAGCAGATAAAAAGATGGAAACTGAAAATTTTGAAGAGAATGATGAGAAGATTGAATTGC</gDNA_template>
            <first_frame> S  V  L  L  L  F  S  S  N  V  Y  K  L  I  K  Q  C  C  S  P  *  *  S  D  C  S  H  G  A  I  S  *  F  *  P  S  Q  S  A  L  R  C  C  S  F  H  H  F  S  *  Y  T  S  T  L  H  L  P  C  *  S  *  P  R  F  E  T  S  R  P  R  W  A  I  C  L  K  H  P  F  S  *  P  F  G  T  F  F  S  *  R  G  *  W  F  A  F  D  C  Y  I  Y  E  K  A  R  R  A  Y  *  K  N  V  Y  *  Y  L  Y  Q  R  E  E  I  G  Y  N  S  *  F  H  N  D  G  S  Y  K  G  C  S  F  I  D  P  E  R  G  V  L  *  V  P  R  H  F  N  F  C  N  I  L  W  A  P  T  K  Y  *  S  L  S  C  *  *  *  *  *  *  S  *  K  N  D  Q  T  N  A  R  *  I  S  V  V  G  *  M  L  W  T  L  C  S  R  E  L  E  K  N  M  N  G  S  S  T  R  E  I  S  S  T  R  A  E  K  S  K  V  S  T  W  I  Y  L  H  I  Q  Q  T  G  S  I  G  L  L  V  Q  F  I  C  C  *  N  H  A  T  L  A  T  *  R  R  M  S  V  *  N  F  *  T  S  K  T  L  T  Q  *  Y  T  S  R  L  E  R  L  L  L  *  H  K  S  K  S  M  S  S  R  L  V  *  N  R  A  I  V  T  S  F  G  Y  *  D  K  Q  I  K  R  W  K  L  K  I  L  K  R  M  M  R  R  L  N  C </first_frame>
            <second_frame>  Q  F  F  S  Y  F  L  P  M  S  T  N  S  S  N  N  V  V  H  L  D  E  V  I  V  A  M  V  P  F  P  D  F  S  H  L  N  Q  L  Y  V  V  A  R  F  I  T  S  H  N  I  P  V  H  F  I  C  L  A  D  R  N  Q  D  L  K  H  R  V  Q  G  G  L  S  A  S  N  I  H  F  H  D  L  L  V  P  S  S  L  D  A  G  N  G  L  P  S  I  V  I  F  M  K  K  L  V  E  P  I  R  R  T  C  I  D  I  S  T  N  A  K  R  L  V  I  I  H  D  S  I  M  M  D  H  I  R  D  V  H  S  L  I  P  N  V  E  S  Y  K  F  H  A  I  S  T  F  A  I  Y  S  G  L  R  Q  S  I  D  H  L  V  V  D  D  D  D  D  D  H  E  K  M  I  K  Q  M  H  D  E  F  P  L  L  D  R  C  C  G  P  Y  A  A  A  S  *  K  R  T  *  M  E  A  Q  L  G  K  Y  H  Q  L  V  Q  R  S  R  K  *  V  R  G  F  T  C  T  Y  N  R  Q  A  V  L  G  C  W  S  S  S  Y  V  A  R  I  T  R  L  *  Q  H  D  E  E  *  V  Y  R  I  S  R  Q  A  R  R  *  L  S  N  I  R  L  V  W  N  D  Y  Y  F  N  T  R  A  S  Q  *  A  R  V  W  F  R  T  E  Q  S  *  L  H  L  G  T  K  T  S  R  *  K  D  G  N  *  K  F  *  R  E  *  *  E  D  *  I   </second_frame>
            <third_frame>   S  S  S  L  I  F  F  Q  C  L  Q  T  H  Q  T  M  L  F  T  L  M  K  *  L  *  P  W  C  H  F  L  I  L  A  I  S  I  S  S  T  L  L  L  V  S  S  L  L  I  I  Y  Q  Y  T  S  S  A  L  L  I  V  T  K  I  *  N  I  A  S  K  V  G  Y  L  P  Q  T  S  I  F  M  T  F  W  Y  L  L  L  L  T  R  V  M  V  C  L  R  L  L  Y  L  *  K  S  S  S  S  L  L  E  E  R  V  L  I  S  L  P  T  R  R  D  W  L  *  F  M  I  P  *  *  W  I  I  *  G  M  F  I  H  *  S  R  T  W  S  L  I  S  S  T  P  F  Q  L  L  Q  Y  T  L  G  S  D  K  V  L  I  T  *  L  L  M  M  M  M  M  I  M  K  K  *  S  N  K  C  T  M  N  F  R  C  W  I  D  V  V  D  L  M  Q  P  R  V  R  K  E  H  E  W  K  L  N  S  G  N  I  I  N  S  C  R  E  V  E  S  K  Y  V  D  L  L  A  H  T  T  D  R  Q  Y  W  A  V  G  P  V  H  M  L  L  E  S  R  D  S  S  N  M  T  K  N  E  C  I  E  F  L  D  K  Q  D  V  N  S  V  I  Y  V  S  F  G  T  T  T  T  L  T  Q  E  Q  V  N  E  L  A  F  G  L  E  Q  S  N  R  N  F  I  W  V  L  R  Q  A  D  K  K  M  E  T  E  N  F  E  E  N  D  E  K  I  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30758" stop="31369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFFSYFLPMSTNSSNNVVHLDEVIVAMVPFPDFSHLNQLYVVARFITSHNIPVHFICLADRNQDLKHRVQGGLSASNIHFHDLLVPSSLDAGNGLPSIVIFMKKLVEPIRRTCIDISTNAKRLVIIHDSIMMDHIRDVHSLIPNVESYKFHAISTFAIYSGLRQSIDHLVVDDDDDDHEKMIKQMHDEFPLLDRCCGPYAAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="46502" PGL_stop="34215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46502" e_stop="46125"/>
            <exon e_start="41181" e_stop="41135"/>
            <exon e_start="40993" e_stop="40969"/>
            <exon e_start="34428" e_stop="34412"/>
            <exon e_start="34232" e_stop="34215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.745"/>
          <exon-intron don_prob="0.000" acc_prob="0.716" e_score="0.400"/>
          <exon-intron don_prob="0.937" acc_prob="0.895" e_score="0.647"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="46502" e_stop="46125" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46124" i_stop="41182" i_length="4943"/>
          </intron>
          <exon e_serial="2" e_score="0.745">
            <gDNA_exon_boundary e_start="41181" e_stop="41135" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41134" i_stop="40994" i_length="141"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="40993" e_stop="40969" e_length="25"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.716">
            <gDNA_intron_boundary i_start="40968" i_stop="34429" i_length="6540"/>
          </intron>
          <exon e_serial="4" e_score="0.647">
            <gDNA_exon_boundary e_start="34428" e_stop="34412" e_length="17"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.895">
            <gDNA_intron_boundary i_start="34411" i_stop="34233" i_length="179"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="34232" e_stop="34215" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46502" stop="46125"/>
              <exon start="41181" stop="41135"/>
              <exon start="40993" stop="40969"/>
              <exon start="34428" stop="34412"/>
              <exon start="34232" stop="34215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTACTAA : AAAATAAGAAAAACGTAAAAAAATAAAAATTAGGAGCGAAAAATTAA : GATGGTGTTGTTGCGGGGAAGGGGG : CAAACAAATCAACCCAA : GGCTTGTGAGAAAAAATC</gDNA_template>
            <first_frame> V  Q  G  Q  L  H  S  L  L  P  G  Y  V  H  L  A  K  R  T  N  I  F  S  S  R  D  *  T  A  L  M  P  L  A  H  Q  V  D  R  S  A  L  R  K  Q  C  H  S  A  I  N  F  F  F  T  F  I  V  F  V  P  N  A  G  H  C  R  V  Q  N  Q  *  F  K  C  E  S  L  G  R  C  F  L  V  C  L  T  N  L  L  V  L  N  N  E  Q  Y  V  S  F  C  V  L  R  V  L  C  H  I  G  Y  A  C  L  F  V  Q  F  *  T  S  L  T  A  Y  *  :  K  I  R  K  T  *  K  N  K  N  *  E  R  K  I  K :   M  V  L  L  R  G  R  G  :  Q  T  N  Q  P  K :   A  C  E  K  K   </first_frame>
            <second_frame>  S  K  D  N  F  I  L  F  F  L  A  M  F  T  L  Q  R  E  Q  I  F  S  V  V  E  I  E  L  H  S  C  L  S  R  I  K  L  T  V  P  P  Y  V  S  N  A  I  Q  P  L  T  S  S  L  H  S  L  C  L  Y  Q  M  Q  A  I  V  E  F  R  I  S  D  S  S  V  K  V  S  A  G  V  S  W  Y  A  S  Q  I  Y  L  F  *  T  M  N  N  M  F  H  F  V  S  Y  V  Y  Y  V  I  *  D  T  R  V  Y  L  F  N  F  K  Q  V  *  L  L  T  K :   K  *  E  K  R  K  K  I  K  I  R  S  E  K  L   : R  W  C  C  C  G  E  G  G :   K  Q  I  N  P   : R  L  V  R  K  N  </second_frame>
            <third_frame>   P  R  T  T  S  F  S  S  S  W  L  C  S  P  C  K  E  N  K  Y  F  Q  *  *  R  L  N  C  T  H  A  S  R  A  S  S  *  P  F  R  L  T  *  A  M  P  F  S  H  *  L  L  L  Y  I  H  C  V  C  T  K  C  R  P  L  *  S  S  E  S  V  I  Q  V  *  K  S  R  Q  V  F  P  G  M  P  H  K  S  T  C  F  E  Q  *  T  I  C  F  I  L  C  L  T  C  I  M  S  Y  R  I  R  V  S  I  C  S  I  L  N  K  F  N  C  L  L   : K  N  K  K  N  V  K  K  *  K  L  G  A  K  N  *  :  D  G  V  V  A  G  K  G   : A  N  K  S  T  Q  :  G  L  *  E  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46501" stop="46226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKDNFILFFLAMFTLQREQIFSVVEIELHSCLSRIKLTVPPYVSNAIQPLTSSLHSLCLYQMQAIVEFRISDSSVKVSAGVSWYASQIYLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42117" PGL_stop="42578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42117" e_stop="42578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="42117" e_stop="42578" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42117" stop="42578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTCAAAAAATTTTATATCATTTTTGATAAATTTAATTACCACATATGAATTTGAGTAAAAATCTTTGTTCAAAAATTGTGATAAATAATTCTCGGGTAACTATTTTTATACGTAAAAATCATTTATCTTTTTTCATCTTCTTCATACTTGTTCCTTGTTTTTATGAGATTTGAAATAAATCATACTAAGACTTTCTTTCAAATCTGAATCTTTATAGTTAATTTTCATTTATCTTCATATTTGGAAAATATAAATTTTTTGTATATAAAAAAGAAAAAAAACTGTGTTAGAGCTAAAATGAAGAAAGTTTTGTAAACTAAATTATGAAGAAGATGATAGATAGGGAGTGAGATGTTTTCTTTTTTGAAAAAAATGTAAATAAAGAAGAAAATATTTTTTAAGTTATTTATAATGCCAAGTGTCAATAAAAGAAGAAAAAATGTAAAAAAAAATGAAAAA</gDNA_template>
            <first_frame> S  F  K  K  F  Y  I  I  F  D  K  F  N  Y  H  I  *  I  *  V  K  I  F  V  Q  K  L  *  *  I  I  L  G  *  L  F  L  Y  V  K  I  I  Y  L  F  S  S  S  S  Y  L  F  L  V  F  M  R  F  E  I  N  H  T  K  T  F  F  Q  I  *  I  F  I  V  N  F  H  L  S  S  Y  L  E  N  I  N  F  L  Y  I  K  K  K  K  N  C  V  R  A  K  M  K  K  V  L  *  T  K  L  *  R  R  *  *  I  G  S  E  M  F  S  F  L  K  K  M  *  I  K  K  K  I  F  F  K  L  F  I  M  P  S  V  N  K  R  R  K  N  V  K  K  N  E  K </first_frame>
            <second_frame>  L  S  K  N  F  I  S  F  L  I  N  L  I  T  T  Y  E  F  E  *  K  S  L  F  K  N  C  D  K  *  F  S  G  N  Y  F  Y  T  *  K  S  F  I  F  F  H  L  L  H  T  C  S  L  F  L  *  D  L  K  *  I  I  L  R  L  S  F  K  S  E  S  L  *  L  I  F  I  Y  L  H  I  W  K  I  *  I  F  C  I  *  K  R  K  K  T  V  L  E  L  K  *  R  K  F  C  K  L  N  Y  E  E  D  D  R  *  G  V  R  C  F  L  F  *  K  K  C  K  *  R  R  K  Y  F  L  S  Y  L  *  C  Q  V  S  I  K  E  E  K  M  *  K  K  M  K   </second_frame>
            <third_frame>   F  Q  K  I  L  Y  H  F  *  *  I  *  L  P  H  M  N  L  S  K  N  L  C  S  K  I  V  I  N  N  S  R  V  T  I  F  I  R  K  N  H  L  S  F  F  I  F  F  I  L  V  P  C  F  Y  E  I  *  N  K  S  Y  *  D  F  L  S  N  L  N  L  Y  S  *  F  S  F  I  F  I  F  G  K  Y  K  F  F  V  Y  K  K  E  K  K  L  C  *  S  *  N  E  E  S  F  V  N  *  I  M  K  K  M  I  D  R  E  *  D  V  F  F  F  E  K  N  V  N  K  E  E  N  I  F  *  V  I  Y  N  A  K  C  Q  *  K  K  K  K  C  K  K  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0012N14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44262" PGL_stop="46502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44645" e_stop="45600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="44645" e_stop="45600" e_length="956"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44645" stop="45260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44646" stop="45188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44770" stop="45296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44902" stop="45600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45271" stop="45579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45271" stop="45579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45272" stop="45579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTTGCTAATGTTAACGAATATTTGAAACTTCGCGTTCAAGGTGATGTAAGAGCTTCAAACATCTATTTCGATAACCTGTTGAGACCTTCATCTCCAACGCAAAAAAATGATCGCGATCAAGCAACATCACTCTGCGTTATGATCAATGCCTAGAATTTCTCGAATCAAACAAGATGTTAACTCGGTGATACTCATCTCATCTGGATCAACGACTACGTTATCACAAGAGCAAGTCAATGAGATTGCTCTGGGTTTAGAACAGAGCAACCGTAGATTTATTTGGGTACTAAGAAAAGGAGATAACGCGGAGAAACTTAAAGATAAAGTCGTAAAGATTGAATTACCCGAAGGGTTTGAAGTAAGAGTGGAAGGAAGAGGAATAATGGTTAATTGGGCAACACAATTAGAATTCTTGGGACATTCATCGACAGGGGGGTTTATGAGTCACTGTGGATGGAATTCATGTATCGAGAGCATTAACATGGGAGTACCTATAGCTACTAGGCCAATCAGTTTCGATCAGCCATTTAACGCTATACTTGTAACTAATTTGTTGGAGATTGGAATCACTGTCAAGTGTTGGTCTCACCGCGATGAATTGGTAAAAGCATCAACCATAGAGAAATCTATCGAGACATTGACGAGTACCATAGAAGGGGAAGAAATGAGGCAAACGGCAATGGAATTGAGCAAAAAGATCAAAAACTCTGTTAGCCACGGAGGACTTGCACGCGAGGCCATGGAATCATTCATATCACATATAATTGAATAACTTCACCGTTGAAGTTTGCTTTTAGTTACGTTGTTATGCAATAGTAATTTTTAGCAAAATAAGTTTGATATTTAAGATTGTTTTAAATTTCAAATTATGTGTTTATGATGTCTATTGTAAGTCCTTCAACGCTTAATAAAATTATTGAAAGTCATTTCAATCTATTGAGAGACATTTTCA</gDNA_template>
            <first_frame> L  F  C  *  C  *  R  I  F  E  T  S  R  S  R  *  C  K  S  F  K  H  L  F  R  *  P  V  E  T  F  I  S  N  A  K  K  *  S  R  S  S  N  I  T  L  R  Y  D  Q  C  L  E  F  L  E  S  N  K  M  L  T  R  *  Y  S  S  H  L  D  Q  R  L  R  Y  H  K  S  K  S  M  R  L  L  W  V  *  N  R  A  T  V  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  I  K  S  *  R  L  N  Y  P  K  G  L  K  *  E  W  K  E  E  E  *  W  L  I  G  Q  H  N  *  N  S  W  D  I  H  R  Q  G  G  L  *  V  T  V  D  G  I  H  V  S  R  A  L  T  W  E  Y  L  *  L  L  G  Q  S  V  S  I  S  H  L  T  L  Y  L  *  L  I  C  W  R  L  E  S  L  S  S  V  G  L  T  A  M  N  W  *  K  H  Q  P  *  R  N  L  S  R  H  *  R  V  P  *  K  G  K  K  *  G  K  R  Q  W  N  *  A  K  R  S  K  T  L  L  A  T  E  D  L  H  A  R  P  W  N  H  S  Y  H  I  *  L  N  N  F  T  V  E  V  C  F  *  L  R  C  Y  A  I  V  I  F  S  K  I  S  L  I  F  K  I  V  L  N  F  K  L  C  V  Y  D  V  Y  C  K  S  F  N  A  *  *  N  Y  *  K  S  F  Q  S  I  E  R  H  F   </first_frame>
            <second_frame>  C  F  A  N  V  N  E  Y  L  K  L  R  V  Q  G  D  V  R  A  S  N  I  Y  F  D  N  L  L  R  P  S  S  P  T  Q  K  N  D  R  D  Q  A  T  S  L  C  V  M  I  N  A  *  N  F  S  N  Q  T  R  C  *  L  G  D  T  H  L  I  W  I  N  D  Y  V  I  T  R  A  S  Q  *  D  C  S  G  F  R  T  E  Q  P  *  I  Y  L  G  T  K  K  R  R  *  R  G  E  T  *  R  *  S  R  K  D  *  I  T  R  R  V  *  S  K  S  G  R  K  R  N  N  G  *  L  G  N  T  I  R  I  L  G  T  F  I  D  R  G  V  Y  E  S  L  W  M  E  F  M  Y  R  E  H  *  H  G  S  T  Y  S  Y  *  A  N  Q  F  R  S  A  I  *  R  Y  T  C  N  *  F  V  G  D  W  N  H  C  Q  V  L  V  S  P  R  *  I  G  K  S  I  N  H  R  E  I  Y  R  D  I  D  E  Y  H  R  R  G  R  N  E  A  N  G  N  G  I  E  Q  K  D  Q  K  L  C  *  P  R  R  T  C  T  R  G  H  G  I  I  H  I  T  Y  N  *  I  T  S  P  L  K  F  A  F  S  Y  V  V  M  Q  *  *  F  L  A  K  *  V  *  Y  L  R  L  F  *  I  S  N  Y  V  F  M  M  S  I  V  S  P  S  T  L  N  K  I  I  E  S  H  F  N  L  L  R  D  I  F  </second_frame>
            <third_frame>   V  L  L  M  L  T  N  I  *  N  F  A  F  K  V  M  *  E  L  Q  T  S  I  S  I  T  C  *  D  L  H  L  Q  R  K  K  M  I  A  I  K  Q  H  H  S  A  L  *  S  M  P  R  I  S  R  I  K  Q  D  V  N  S  V  I  L  I  S  S  G  S  T  T  T  L  S  Q  E  Q  V  N  E  I  A  L  G  L  E  Q  S  N  R  R  F  I  W  V  L  R  K  G  D  N  A  E  K  L  K  D  K  V  V  K  I  E  L  P  E  G  F  E  V  R  V  E  G  R  G  I  M  V  N  W  A  T  Q  L  E  F  L  G  H  S  S  T  G  G  F  M  S  H  C  G  W  N  S  C  I  E  S  I  N  M  G  V  P  I  A  T  R  P  I  S  F  D  Q  P  F  N  A  I  L  V  T  N  L  L  E  I  G  I  T  V  K  C  W  S  H  R  D  E  L  V  K  A  S  T  I  E  K  S  I  E  T  L  T  S  T  I  E  G  E  E  M  R  Q  T  A  M  E  L  S  K  K  I  K  N  S  V  S  H  G  G  L  A  R  E  A  M  E  S  F  I  S  H  I  I  E  *  L  H  R  *  S  L  L  L  V  T  L  L  C  N  S  N  F  *  Q  N  K  F  D  I  *  D  C  F  K  F  Q  I  M  C  L  *  C  L  L  *  V  L  Q  R  L  I  K  L  L  K  V  I  S  I  Y  *  E  T  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44791" stop="45420"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMPRISRIKQDVNSVILISSGSTTTLSQEQVNEIALGLEQSNRRFIWVLRKGDNAEKLKDKVVKIELPEGFEVRVEGRGIMVNWATQLEFLGHSSTGGFMSHCGWNSCIESINMGVPIATRPISFDQPFNAILVTNLLEIGITVKCWSHRDELVKASTIEKSIETLTSTIEGEEMRQTAMELSKKIKNSVSHGGLAREAMESFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44262" e_stop="44282"/>
            <exon e_start="46119" e_stop="46502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.524"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.524">
            <gDNA_exon_boundary e_start="44262" e_stop="44282" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44283" i_stop="46118" i_length="1836"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="46119" e_stop="46502" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44262" stop="44282"/>
              <exon start="46119" stop="46502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740498" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTATTTATATATGAAA : TGTGCATTAGTAAGCAGTTAAACTTGTTTAAAATTGAACAAATAGACACGCGTATCCTATATGACATAATACACGTAAGACACAAAATGAAACATATTGTTCATTGTTCAAAACAAGTAGATTTGTGAGGCATACCAGGAAACACCTGCCGAGACTTTCACACTTGAATCACTGATTCTGAACTCTACAATGGCCTGCATTTGGTACAAACACAATGAATGTAAAGAAGAAGTTAATGGCTGAATGGCATTGCTTACGTAAGGCGGAACGGTCAACTTGATGCGCGAGAGGCATGAGTGCAGTTCAATCTCTACTACTGAAAATATTTGTTCTCTTTGCAAGGTGAACATAGCCAGGAAGAAGAGAATGAAGTTGTCCTTGGAC</gDNA_template>
            <first_frame> I  I  Y  L  Y  M  K  :  C  A  L  V  S  S  *  T  C  L  K  L  N  K  *  T  R  V  S  Y  M  T  *  Y  T  *  D  T  K  *  N  I  L  F  I  V  Q  N  K  *  I  C  E  A  Y  Q  E  T  P  A  E  T  F  T  L  E  S  L  I  L  N  S  T  M  A  C  I  W  Y  K  H  N  E  C  K  E  E  V  N  G  *  M  A  L  L  T  *  G  G  T  V  N  L  M  R  E  R  H  E  C  S  S  I  S  T  T  E  N  I  C  S  L  C  K  V  N  I  A  R  K  K  R  M  K  L  S  L  D </first_frame>
            <second_frame>  L  F  I  Y  I  *  N :   V  H  *  *  A  V  K  L  V  *  N  *  T  N  R  H  A  Y  P  I  *  H  N  T  R  K  T  Q  N  E  T  Y  C  S  L  F  K  T  S  R  F  V  R  H  T  R  K  H  L  P  R  L  S  H  L  N  H  *  F  *  T  L  Q  W  P  A  F  G  T  N  T  M  N  V  K  K  K  L  M  A  E  W  H  C  L  R  K  A  E  R  S  T  *  C  A  R  G  M  S  A  V  Q  S  L  L  L  K  I  F  V  L  F  A  R  *  T  *  P  G  R  R  E  *  S  C  P  W   </second_frame>
            <third_frame>   Y  L  F  I  Y  E   : M  C  I  S  K  Q  L  N  L  F  K  I  E  Q  I  D  T  R  I  L  Y  D  I  I  H  V  R  H  K  M  K  H  I  V  H  C  S  K  Q  V  D  L  *  G  I  P  G  N  T  C  R  D  F  H  T  *  I  T  D  S  E  L  Y  N  G  L  H  L  V  Q  T  Q  *  M  *  R  R  S  *  W  L  N  G  I  A  Y  V  R  R  N  G  Q  L  D  A  R  E  A  *  V  Q  F  N  L  Y  Y  *  K  Y  L  F  S  L  Q  G  E  H  S  Q  E  E  E  N  E  V  V  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0012N14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48519" PGL_stop="55414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48519" e_stop="50200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="48519" e_stop="50200" e_length="1682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48519" stop="49367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48520" stop="49213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48594" stop="49352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48599" stop="50196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48611" stop="49241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48613" stop="49161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48613" stop="49134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48618" stop="49161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48620" stop="49142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48624" stop="49480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48645" stop="49243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48655" stop="49230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48670" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48724" stop="49252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48762" stop="49263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48762" stop="49151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48773" stop="49358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48883" stop="49400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48966" stop="49499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49003" stop="49501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49032" stop="49357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49263" stop="49703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49337" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49416" stop="49990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49479" stop="50200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49481" stop="50178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTTTTTT</gDNA_template>
            <first_frame> *  K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R  *  V  P  R  F  T  C  E  S  K  R  Q  A  V  M  G  F  W  T  I  S  Y  A  A  R  I  K  L  *  H  H  S  A  S  *  S  M  S  R  I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q  S  *  *  N  Y  *  Q  S  F  Q  S  I  Q  R  Y  F  Q  S  F   </first_frame>
            <second_frame>  K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E  G  K  Y  P  D  L  L  A  K  A  K  G  K  P  L  W  A  F  G  P  F  H  M  L  L  E  S  N  S  N  I  T  P  R  H  D  Q  C  L  E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  A  N  K  I  I  D  S  H  F  N  P  F  R  D  I  F  N  L  F  </second_frame>
            <third_frame>   K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  V  S  T  Q  I  Y  L  R  K  Q  K  A  S  R  Y  G  L  L  D  H  F  I  C  C  *  N  Q  T  L  T  S  L  R  V  M  I  N  V  *  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K  L  I  K  L  L  T  V  I  S  I  H  S  E  I  F  S  I  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48577" stop="50001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEGKYPDLLAKAKGKPLWAFGPFHMLLESNSNITPRHDQCLEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48519" e_stop="50184"/>
            <exon e_start="50735" e_stop="50739"/>
            <exon e_start="52442" e_stop="52478"/>
            <exon e_start="53373" e_stop="53380"/>
            <exon e_start="53553" e_stop="53566"/>
            <exon e_start="55222" e_stop="55249"/>
            <exon e_start="55313" e_stop="55414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.000" acc_prob="0.329" e_score="0.676"/>
          <exon-intron don_prob="0.917" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.400" acc_prob="1.000" e_score="0.571"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="48519" e_stop="50184" e_length="1666"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50185" i_stop="50734" i_length="550"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="50735" e_stop="50739" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50740" i_stop="52441" i_length="1702"/>
          </intron>
          <exon e_serial="3" e_score="0.676">
            <gDNA_exon_boundary e_start="52442" e_stop="52478" e_length="37"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.329">
            <gDNA_intron_boundary i_start="52479" i_stop="53372" i_length="894"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="53373" e_stop="53380" e_length="8"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53381" i_stop="53552" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="0.571">
            <gDNA_exon_boundary e_start="53553" e_stop="53566" e_length="14"/>
          </exon>
          <intron i_serial="5" don_prob="0.400" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53567" i_stop="55221" i_length="1655"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="55222" e_stop="55249" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55250" i_stop="55312" i_length="63"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="55313" e_stop="55414" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48519" stop="49367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48520" stop="49213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48594" stop="49352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48611" stop="49241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48613" stop="49161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48613" stop="49134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48618" stop="49161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48620" stop="49142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48624" stop="49480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48645" stop="49243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48655" stop="49230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48670" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48724" stop="49252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48762" stop="49263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48762" stop="49151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48773" stop="49358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48883" stop="49400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48966" stop="49499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49003" stop="49501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49032" stop="49357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49263" stop="49703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49337" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49416" stop="49990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49481" stop="50178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49665" stop="50184"/>
              <exon start="50735" stop="50739"/>
              <exon start="52442" stop="52478"/>
              <exon start="53373" stop="53380"/>
              <exon start="53553" stop="53566"/>
              <exon start="55222" stop="55249"/>
              <exon start="55313" stop="55414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGAT : AAGAA : AAAAAAATTATACGTACGGAGAAAAGAAAAAAAAAAG : GAAACATG : TTCTTCCCCTTCCG : CTACTTATAGGAAGGAGAGAGGGAGGCC : TATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R  *  V  P  R  F  T  C  E  S  K  R  Q  A  V  M  G  F  W  T  I  S  Y  A  A  R  I  K  L  *  H  H  S  A  S  *  S  M  S  R  I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q  S  *  *  N  Y  *  Q  S  F  Q  S  I  Q  R   : *  E  :  K  K  I  I  R  T  E  K  R  K  K  K   : G  N  M  :  F  F  P  F  R :   Y  L  *  E  G  E  R  E  A  :  Y  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E  G  K  Y  P  D  L  L  A  K  A  K  G  K  P  L  W  A  F  G  P  F  H  M  L  L  E  S  N  S  N  I  T  P  R  H  D  Q  C  L  E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  A  N  K  I  I  D  S  H  F  N  P  F  R  D  :  K  K :   K  K  L  Y  V  R  R  K  E  K  K  K  :  E  T  C :   S  S  P  S   : A  T  Y  R  K  E  R  G  R  P :   I  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  V  S  T  Q  I  Y  L  R  K  Q  K  A  S  R  Y  G  L  L  D  H  F  I  C  C  *  N  Q  T  L  T  S  L  R  V  M  I  N  V  *  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K  L  I  K  L  L  T  V  I  S  I  H  S  E  I :   R   : K  K  N  Y  T  Y  G  E  K  K  K  K  R :   K  H   : V  L  P  L  P  :  L  L  I  G  R  R  E  G  G   : L  Y  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48577" stop="50001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEGKYPDLLAKAKGKPLWAFGPFHMLLESNSNITPRHDQCLEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50092" stop="50184"/>
                    <exon start="50735" stop="50739"/>
                    <exon start="52442" stop="52478"/>
                    <exon start="53373" stop="53380"/>
                    <exon start="53553" stop="53566"/>
                    <exon start="55222" stop="55249"/>
                    <exon start="55313" stop="55412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEFQIKQIMSLWWLFKANKIIDSHFNPFRDKKKKLYVRRKEKKKETCSSPSATYRKERGRPIYFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48520" e_stop="49267"/>
            <exon e_start="49385" e_stop="50200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.628" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48520" e_stop="49267" e_length="748"/>
          </exon>
          <intron i_serial="1" don_prob="0.628" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="49385" e_stop="50200" e_length="816"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48520" stop="49213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48611" stop="49241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48613" stop="49161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48613" stop="49134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48618" stop="49161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48620" stop="49142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48645" stop="49243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48655" stop="49230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48695" stop="49069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48724" stop="49252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48762" stop="49263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48762" stop="49151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49030" stop="49267"/>
              <exon start="49385" stop="49888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49084" stop="49267"/>
              <exon start="49385" stop="49705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49089" stop="49267"/>
              <exon start="49385" stop="49541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49089" stop="49267"/>
              <exon start="49385" stop="49541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49416" stop="49990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49479" stop="50200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49481" stop="50178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG : AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAGAGATATTTTCAATCTTTTTT</gDNA_template>
            <first_frame> K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E   : E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  A  N  K  I  I  D  S  H  F  N  P  F  R  D  I  F  N  L  F  </first_frame>
            <second_frame>  K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  :  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K  L  I  K  L  L  T  V  I  S  I  H  S  E  I  F  S  I  F  F </second_frame>
            <third_frame>   K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R :   I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q  S  *  *  N  Y  *  Q  S  F  Q  S  I  Q  R  Y  F  Q  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48577" stop="49267"/>
                    <exon start="49385" stop="50001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="53861" PGL_stop="53385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53861" e_stop="53385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="53861" e_stop="53385" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53861" stop="53385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412277" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAGTGGGAGGAAGAGGAATGGTGGTGAGGAATTGGGTGCCTCAACTGGAAATCTTGGGACATAAATCTACGGGAGGGTTCTTGAGTCACTGTGGATGGAATTCTTGTATGGAGAGCGTTAGCATGGGAGTTCCTATAGCAACTTGGCCAATTCAAGTGGACCAACCGTATAACGCTGTTTTTGTAACCAACGTGCTGAAGATTGGGATCCCGGTTAGGAGTTGGTCTCGTAGGGAAGAATTGGTAACAGCAACAACTATTGAGAAAGCTGTTAGGACTTTGATGGGTTCACCGGAAGGGGAAGAAATTCGACAGAGGGCAATCGGGTTGAGCAATAAGATCAAGAACTCTATTAGTCATGGAGGACTTGCACATAAGGAAAGGGAATCTTTCATTTCTTGTATTACCAAATAAATTTCACTCAATGAACATCAACATTTTGTATCAAGTATGTCATGAATAACTATTTTTCAA</gDNA_template>
            <first_frame> E  R  V  G  G  R  G  M  V  V  R  N  W  V  P  Q  L  E  I  L  G  H  K  S  T  G  G  F  L  S  H  C  G  W  N  S  C  M  E  S  V  S  M  G  V  P  I  A  T  W  P  I  Q  V  D  Q  P  Y  N  A  V  F  V  T  N  V  L  K  I  G  I  P  V  R  S  W  S  R  R  E  E  L  V  T  A  T  T  I  E  K  A  V  R  T  L  M  G  S  P  E  G  E  E  I  R  Q  R  A  I  G  L  S  N  K  I  K  N  S  I  S  H  G  G  L  A  H  K  E  R  E  S  F  I  S  C  I  T  K  *  I  S  L  N  E  H  Q  H  F  V  S  S  M  S  *  I  T  I  F  Q </first_frame>
            <second_frame>  K  E  W  E  E  E  E  W  W  *  G  I  G  C  L  N  W  K  S  W  D  I  N  L  R  E  G  S  *  V  T  V  D  G  I  L  V  W  R  A  L  A  W  E  F  L  *  Q  L  G  Q  F  K  W  T  N  R  I  T  L  F  L  *  P  T  C  *  R  L  G  S  R  L  G  V  G  L  V  G  K  N  W  *  Q  Q  Q  L  L  R  K  L  L  G  L  *  W  V  H  R  K  G  K  K  F  D  R  G  Q  S  G  *  A  I  R  S  R  T  L  L  V  M  E  D  L  H  I  R  K  G  N  L  S  F  L  V  L  P  N  K  F  H  S  M  N  I  N  I  L  Y  Q  V  C  H  E  *  L  F  F   </second_frame>
            <third_frame>   K  S  G  R  K  R  N  G  G  E  E  L  G  A  S  T  G  N  L  G  T  *  I  Y  G  R  V  L  E  S  L  W  M  E  F  L  Y  G  E  R  *  H  G  S  S  Y  S  N  L  A  N  S  S  G  P  T  V  *  R  C  F  C  N  Q  R  A  E  D  W  D  P  G  *  E  L  V  S  *  G  R  I  G  N  S  N  N  Y  *  E  S  C  *  D  F  D  G  F  T  G  R  G  R  N  S  T  E  G  N  R  V  E  Q  *  D  Q  E  L  Y  *  S  W  R  T  C  T  *  G  K  G  I  F  H  F  L  Y  Y  Q  I  N  F  T  Q  *  T  S  T  F  C  I  K  Y  V  M  N  N  Y  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53861" stop="53445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERVGGRGMVVRNWVPQLEILGHKSTGGFLSHCGWNSCMESVSMGVPIATWPIQVDQPYNAVFVTNVLKIGIPVRSWSRREELVTATTIEKAVRTLMGSPEGEEIRQRAIGLSNKIKNSISHGGLAHKERESFISCITK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="54851" PGL_stop="54289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54851" e_stop="54289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="54851" e_stop="54289" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54851" stop="54392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54814" stop="54289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54814" stop="54343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCAAACCATTTTTGTTGTTGCAATGGCTACCAATTCATCAACCAACATTCTTGAGCTCAATGAAGTAATTGTAGCTGTAATTCCATGGCCAGAACATGGTCATCTCAATCAACTCTTCCATATAGCTAACTTCATCTCTTCTCACAATATCCCCTTACACTTCATCTCTCTCACTGATCGAAATCAAGATCTAAAAACCCGCGTTCAAAATACCTCAAAAATTCATTTTAATGACCTTTTAGCACCCCCTCTGATCCCAATTTCAGAACCCAGAGAGGATTTTGCTGATGAGTTTGCATTTTTGGAGTTTTTGGATAAATTGGGGGAACCCATTTGTGAAATTTGTGTTGAAATCTCGAAGAAGGCGAAGAAATTGGTGGTTGTTTTTGATTCTTTGATGACTGATGTGATTAAGGAAGTGTATTCGATATCAAATGTTGAGTGTTACTCTTTTCATGCGATTTCAGCTTTTTGTATGTATTCTACATTTCAACAGGTTGCTGATGAAGTTGAAGACGGAGTCGCACGCCAACTGTTCGATGAAATGCCTGAAGTCGGGGA</gDNA_template>
            <first_frame> I  Q  T  I  F  V  V  A  M  A  T  N  S  S  T  N  I  L  E  L  N  E  V  I  V  A  V  I  P  W  P  E  H  G  H  L  N  Q  L  F  H  I  A  N  F  I  S  S  H  N  I  P  L  H  F  I  S  L  T  D  R  N  Q  D  L  K  T  R  V  Q  N  T  S  K  I  H  F  N  D  L  L  A  P  P  L  I  P  I  S  E  P  R  E  D  F  A  D  E  F  A  F  L  E  F  L  D  K  L  G  E  P  I  C  E  I  C  V  E  I  S  K  K  A  K  K  L  V  V  V  F  D  S  L  M  T  D  V  I  K  E  V  Y  S  I  S  N  V  E  C  Y  S  F  H  A  I  S  A  F  C  M  Y  S  T  F  Q  Q  V  A  D  E  V  E  D  G  V  A  R  Q  L  F  D  E  M  P  E  V  G   </first_frame>
            <second_frame>  F  K  P  F  L  L  L  Q  W  L  P  I  H  Q  P  T  F  L  S  S  M  K  *  L  *  L  *  F  H  G  Q  N  M  V  I  S  I  N  S  S  I  *  L  T  S  S  L  L  T  I  S  P  Y  T  S  S  L  S  L  I  E  I  K  I  *  K  P  A  F  K  I  P  Q  K  F  I  L  M  T  F  *  H  P  L  *  S  Q  F  Q  N  P  E  R  I  L  L  M  S  L  H  F  W  S  F  W  I  N  W  G  N  P  F  V  K  F  V  L  K  S  R  R  R  R  R  N  W  W  L  F  L  I  L  *  *  L  M  *  L  R  K  C  I  R  Y  Q  M  L  S  V  T  L  F  M  R  F  Q  L  F  V  C  I  L  H  F  N  R  L  L  M  K  L  K  T  E  S  H  A  N  C  S  M  K  C  L  K  S  G  </second_frame>
            <third_frame>   S  N  H  F  C  C  C  N  G  Y  Q  F  I  N  Q  H  S  *  A  Q  *  S  N  C  S  C  N  S  M  A  R  T  W  S  S  Q  S  T  L  P  Y  S  *  L  H  L  F  S  Q  Y  P  L  T  L  H  L  S  H  *  S  K  S  R  S  K  N  P  R  S  K  Y  L  K  N  S  F  *  *  P  F  S  T  P  S  D  P  N  F  R  T  Q  R  G  F  C  *  *  V  C  I  F  G  V  F  G  *  I  G  G  T  H  L  *  N  L  C  *  N  L  E  E  G  E  E  I  G  G  C  F  *  F  F  D  D  *  C  D  *  G  S  V  F  D  I  K  C  *  V  L  L  F  S  C  D  F  S  F  L  Y  V  F  Y  I  S  T  G  C  *  *  S  *  R  R  S  R  T  P  T  V  R  *  N  A  *  S  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54851" stop="54291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQTIFVVAMATNSSTNILELNEVIVAVIPWPEHGHLNQLFHIANFISSHNIPLHFISLTDRNQDLKTRVQNTSKIHFNDLLAPPLIPISEPREDFADEFAFLEFLDKLGEPICEICVEISKKAKKLVVVFDSLMTDVIKEVYSISNVECYSFHAISAFCMYSTFQQVADEVEDGVARQLFDEMPEVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64104" PGL_stop="75075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64104" e_stop="64482"/>
            <exon e_start="67519" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69047"/>
            <exon e_start="69317" e_stop="69404"/>
            <exon e_start="69495" e_stop="69845"/>
            <exon e_start="69954" e_stop="70196"/>
            <exon e_start="70277" e_stop="71704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64104" e_stop="64482" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67519" e_stop="67590" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68950" e_stop="69047" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69317" e_stop="69404" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69495" e_stop="69845" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69954" e_stop="70196" e_length="243"/>
          </exon>
          <intron i_serial="8" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.999">
            <gDNA_exon_boundary e_start="70277" e_stop="71704" e_length="1428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64108" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="67942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64125" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64131" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64135" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67564" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69047"/>
              <exon start="69317" stop="69404"/>
              <exon start="69495" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69394" stop="69404"/>
              <exon start="69495" stop="69845"/>
              <exon start="69954" stop="69983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69513" stop="69845"/>
              <exon start="69954" stop="70164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69646" stop="69845"/>
              <exon start="69954" stop="70156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69961" stop="70196"/>
              <exon start="70277" stop="70581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70562" stop="71340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70597" stop="71439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70668" stop="71454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70677" stop="71412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70678" stop="71070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70908" stop="71694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="71704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71099" stop="71435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71153" stop="71671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71182" stop="71437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71183" stop="71679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71290" stop="71662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG : ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG : AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG : GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG : GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCT</gDNA_template>
            <first_frame> S  R  E  E  R  K  S  N  I  S  L  S  L  S  L  *  K  F  L  L  S  L  S  K  N  L  I  F  C  I  S  I  H  I  *  I  H  V  Y  L  Y  L  *  L  F  V  D  S  F  L  V  *  I  C  H  F  S  F  C  V  W  R  C  S  N  *  S  D  C  G  E  L  R  Y  A  G  *  S  D  G  D  K  F  E  T  R  W  W  *  Q  R  W  W  K  Q  S  I  W  L  S  L  *  Y  L  I  Y  Q  F  *  S  L  R  F  S  S  S  W  R  F  F  I  F  A  I  F  Q   : D  W  R  F  S  F  *  Q  P  *  T  C  S  L  Y  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  :  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S   : G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I  F  Q  P  I  E  R  T  I  D  K  P  S  A  G  S  T  P  K  V  F  G  S  *  C  A  G  F  T  C  Q  *  L  G  P  *  A  G  R   : G  E  S  Q  N  H  *  R  D  P  L  G  S  R  E  D  L  G  V  A  S  W  C  Y  I  K  H  *  K  C  S  C  S  S  R  Y  S  R  E  F  G  S  W  W  L  S  H  *  S  T  R  H  W  W  Y  D  A  R  D  A  R  S  K  E  D  A  W  D  A  R  N  G  *  *  Q  L  G  S  S  *  V  T  N  A  E  R  C  S  A  T  I  D  W  E  V  A  G  L  E  H  K  T  V  A  S  G  *  Q  C  R  H  E  W  Q  E  *  C  S  L  T  R  *  W  W  T  S  C  P  T  I  R  L  C  L  W  Y  G  A  C  I  T  S  S  S  T  S  *  A  I  S  N  *  Y  R  F  A  C  C  W  E  T  S  G  S  S  C  K  V  K  S  *  G  A  E  K  K  N  S  F  T  F  G  G  I  F  *  C  S  D  F  G  *  S  L  T  V  H  *  G  T  Q  I  P  C  L  L  S  *  G  C  R  E  S  H  I  T  R  T  G  Q  K  P  T  T  R  *  T  S  C  T  T  S  *  A  L  V  C  *  K  G  F  Y  C  Y  R  L  G  Y  W  M  L  E  L  C  F  S  I  G  R  S  C  N  G  F  T  K  S  T  S  K  F  R  G  D  N  F  E  A  S  F  D  G  G  N  G  L  Q  V  G  E  *  D  P  A  E  G  N  R  *  L  I  P  E  G  L  I  C  C  H  H  E  S  Y  *  L  *  P  Y  W  S  R  S  V  R  L  T  S  T  *  C  Q  S  L  Q  K  S  V  P  V  K  S  S  N  P  R  Q  W  N  V  L  H  I  T  Y  P  R  D  G  L  S  V  V  L  S  G  L  K  Q  L  Y  H  S  F  S  S  L  E  L  *  *  R  T  G  E  F  M  *  V  V  Y  F  S  Q  S  V  F  I  R  R  R  K  T  V  L  Q  H  G  K  L  Y  A  I  F  A  *  G  N  G  L  L  D  G  V  Q  P  F  C  I  T  L  V  F  H  L  F  F  P  V  D  L  L  Y  *  V  L  S  N  L  *  V  H  K  M  Q  L  F  L  S  L  H  H  F  K  A  E  F  D  N  V  S  L  S  S  V  Y  L  </first_frame>
            <second_frame>  V  E  K  R  G  K  A  I  S  L  F  L  S  L  S  K  N  S  Y  F  L  S  L  K  I  *  S  F  V  S  L  Y  T  Y  R  Y  T  F  I  C  I  Y  S  F  L  L  I  R  F  W  F  R  F  A  I  F  L  F  V  C  G  G  V  R  I  D  R  T  V  E  N  *  G  M  Q  A  D  Q  T  V  I  S  L  R  P  G  G  G  N  R  G  G  G  S  R  V  F  G  S  R  F  D  T  S  S  T  N  S  D  L  S  G  F  R  P  H  G  G  S  S  S  L  P  S  F  K  :  T  G  D  S  R  F  D  S  H  E  R  V  R  Y  T  R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G :   I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  :  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  F  N  Q  L  K  E  L  S  T  N  P  Q  L  V  A  R  L  R  F  L  V  R  D  V  L  D  L  R  A  N  N  W  V  P  R  R  E  E  :  V  K  A  K  T  I  N  E  I  H  S  E  A  E  K  T  L  G  L  R  P  G  A  T  L  S  I  R  N  A  R  A  P  P  G  I  Q  G  N  L  G  P  G  G  Y  P  I  N  R  P  G  T  G  G  M  M  P  G  M  P  G  A  R  K  M  P  G  M  P  G  M  D  N  D  N  W  E  V  P  R  S  R  M  P  R  G  A  Q  Q  P  L  I  G  K  S  P  A  L  N  T  R  L  L  P  Q  G  S  N  V  G  M  S  G  R  S  S  A  L  L  Q  G  S  G  G  P  P  V  R  P  S  G  Y  V  S  G  M  E  P  V  S  Q  V  P  V  P  V  K  P  S  P  T  S  T  V  L  P  V  A  G  K  P  Q  A  P  A  A  R  S  N  P  E  E  L  K  R  K  T  V  S  L  L  E  E  Y  F  S  V  R  I  L  D  E  A  L  Q  C  I  E  E  L  K  S  P  A  F  Y  P  E  V  V  E  K  A  I  S  L  G  L  D  K  S  P  P  R  V  E  P  V  A  Q  L  L  E  H  L  S  A  E  K  V  F  T  A  T  D  L  A  T  G  C  L  N  F  A  S  Q  L  E  D  L  A  M  D  L  P  K  A  P  A  N  F  G  E  I  I  S  R  L  V  L  T  G  A  M  D  F  K  L  V  N  E  I  L  Q  K  V  T  D  D  L  Y  Q  K  D  L  F  A  A  I  M  K  A  I  S  S  S  P  T  G  Q  G  V  L  D  S  Q  A  P  D  V  K  A  C  K  N  L  F  Q  *  K  A  Q  I  L  V  N  G  M  C  S  I  S  L  I  L  E  M  A  F  P  L  C  S  V  D  *  S  S  C  I  T  V  F  H  H  W  N  C  S  K  G  Q  V  S  L  C  E  L  Y  T  F  P  K  V  C  S  L  D  D  E  R  Q  F  C  N  M  V  N  Y  T  P  Y  L  L  E  A  T  G  C  L  T  E  S  S  R  F  V  L  H  *  F  F  I  Y  F  F  P  L  T  C  Y  I  K  F  C  R  T  C  E  F  I  K  C  N  C  S  Y  L  Y  T  I  L  K  L  N  L  I  T  *  V  C  L  Q  F  I  S </second_frame>
            <third_frame>   *  R  R  E  E  K  Q  Y  L  S  F  S  L  S  L  K  I  L  T  F  S  L  *  K  S  N  L  L  Y  L  Y  T  H  I  D  T  R  L  S  V  S  I  A  F  C  *  F  V  F  G  L  D  L  P  F  F  F  L  C  V  E  V  F  E  L  I  G  L  W  R  I  E  V  C  R  L  I  R  R  *  *  V  *  D  Q  V  V  V  T  E  V  V  E  A  E  Y  L  A  L  A  L  I  P  H  L  P  I  L  I  S  Q  V  F  V  L  M  E  V  L  H  L  C  H  L  S  R :   L  E  I  L  V  L  T  A  M  N  V  F  A  I  L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R   : E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R :   N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I  S  T  N  *  K  N  Y  R  Q  T  L  S  W  *  H  A  *  G  F  W  F  V  M  C  W  I  Y  V  P  I  T  G  S  L  G  G  K  R :   *  K  P  K  P  L  T  R  S  T  R  K  Q  R  R  P  W  G  C  V  L  V  L  H  *  A  L  E  M  L  V  L  L  Q  V  F  K  G  I  W  V  L  V  A  I  P  L  I  D  P  A  L  V  V  *  C  Q  G  C  Q  E  Q  G  R  C  L  G  C  Q  E  W  I  M  T  T  G  K  F  L  G  H  E  C  R  E  V  L  S  N  H  *  L  G  S  R  R  P  *  T  Q  D  C  C  L  R  V  A  M  S  A  *  V  A  G  V  V  L  S  Y  K  V  V  V  D  L  L  S  D  H  Q  A  M  S  L  V  W  S  L  Y  H  K  F  Q  Y  Q  L  S  H  L  Q  L  V  P  F  C  L  L  L  G  N  L  R  L  Q  L  Q  G  Q  I  L  R  S  *  K  E  K  Q  F  H  F  W  R  N  I  L  V  F  G  F  W  M  K  P  Y  S  A  L  R  N  S  N  P  L  P  S  I  L  R  L  S  R  K  P  Y  H  S  D  W  T  K  A  H  H  A  L  N  Q  L  H  N  F  L  S  T  C  L  L  K  R  F  L  L  L  Q  T  W  L  L  D  A  *  T  L  L  L  N  W  K  I  L  Q  W  I  Y  Q  K  H  Q  Q  I  S  G  R  *  F  R  G  *  F  *  R  G  Q  W  T  S  S  W  *  M  R  S  C  R  R  *  P  M  T  Y  T  R  R  T  Y  L  L  P  S  *  K  L  L  A  L  A  L  L  V  K  E  C  *  T  H  K  H  L  M  S  K  P  A  K  I  C  S  S  K  K  L  K  S  S  S  M  E  C  A  P  Y  H  L  S  S  R  W  P  F  R  C  A  Q  W  T  K  A  A  V  S  Q  F  F  I  I  G  T  V  V  K  D  R  *  V  Y  V  S  C  I  L  F  P  K  C  V  H  *  T  T  K  D  S  F  A  T  W  *  I  I  R  H  I  C  L  R  Q  R  A  A  *  R  S  P  A  V  L  Y  Y  I  S  F  S  F  I  F  S  R  *  L  V  I  L  S  F  V  E  L  V  S  S  *  N  A  T  V  P  I  F  T  P  F  *  S  *  I  *  *  R  K  F  V  F  S  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64321" stop="64482"/>
                    <exon start="67519" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69047"/>
                    <exon start="69317" stop="69404"/>
                    <exon start="69495" stop="69845"/>
                    <exon start="69954" stop="70196"/>
                    <exon start="70277" stop="71293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2322</number_coding_nucleotides>
                  <number_encoded_amino_acids>774</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQADQTVISLRPGGGNRGGGSRVFGSRFDTSSTNSDLSGFRPHGGSSSLPSFKTGDSRFDSHERVRYTRDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIYFNQLKELSTNPQLVARLRFLVRDVLDLRANNWVPRREEVKAKTINEIHSEAEKTLGLRPGATLSIRNARAPPGIQGNLGPGGYPINRPGTGGMMPGMPGARKMPGMPGMDNDNWEVPRSRMPRGAQQPLIGKSPALNTRLLPQGSNVGMSGRSSALLQGSGGPPVRPSGYVSGMEPVSQVPVPVKPSPTSTVLPVAGKPQAPAARSNPEELKRKTVSLLEEYFSVRILDEALQCIEELKSPAFYPEVVEKAISLGLDKSPPRVEPVAQLLEHLSAEKVFTATDLATGCLNFASQLEDLAMDLPKAPANFGEIISRLVLTGAMDFKLVNEILQKVTDDLYQKDLFAAIMKAISSSPTGQGVLDSQAPDVKACKNLFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64104" e_stop="64482"/>
            <exon e_start="67519" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69047"/>
            <exon e_start="69317" e_stop="69404"/>
            <exon e_start="69495" e_stop="69845"/>
            <exon e_start="69954" e_stop="70196"/>
            <exon e_start="70277" e_stop="71679"/>
            <exon e_start="72481" e_stop="72498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.619" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64104" e_stop="64482" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67519" e_stop="67590" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68950" e_stop="69047" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69317" e_stop="69404" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69495" e_stop="69845" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69954" e_stop="70196" e_length="243"/>
          </exon>
          <intron i_serial="8" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.999">
            <gDNA_exon_boundary e_start="70277" e_stop="71679" e_length="1403"/>
          </exon>
          <intron i_serial="9" don_prob="0.619" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71680" i_stop="72480" i_length="801"/>
          </intron>
          <exon e_serial="10" e_score="0.778">
            <gDNA_exon_boundary e_start="72481" e_stop="72498" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64108" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="67942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64125" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64131" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64135" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67564" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69047"/>
              <exon start="69317" stop="69404"/>
              <exon start="69495" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69394" stop="69404"/>
              <exon start="69495" stop="69845"/>
              <exon start="69954" stop="69983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69513" stop="69845"/>
              <exon start="69954" stop="70164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69646" stop="69845"/>
              <exon start="69954" stop="70156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69961" stop="70196"/>
              <exon start="70277" stop="70581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70562" stop="71340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70597" stop="71439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70668" stop="71454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70677" stop="71412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70678" stop="71070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71099" stop="71435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71153" stop="71671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71182" stop="71437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71183" stop="71679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71290" stop="71662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71394" stop="71679"/>
              <exon start="72481" stop="72498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG : ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG : AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG : GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG : GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAAC : AAAAATAAAGAAAAATTA</gDNA_template>
            <first_frame> S  R  E  E  R  K  S  N  I  S  L  S  L  S  L  *  K  F  L  L  S  L  S  K  N  L  I  F  C  I  S  I  H  I  *  I  H  V  Y  L  Y  L  *  L  F  V  D  S  F  L  V  *  I  C  H  F  S  F  C  V  W  R  C  S  N  *  S  D  C  G  E  L  R  Y  A  G  *  S  D  G  D  K  F  E  T  R  W  W  *  Q  R  W  W  K  Q  S  I  W  L  S  L  *  Y  L  I  Y  Q  F  *  S  L  R  F  S  S  S  W  R  F  F  I  F  A  I  F  Q   : D  W  R  F  S  F  *  Q  P  *  T  C  S  L  Y  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  :  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S   : G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I  F  Q  P  I  E  R  T  I  D  K  P  S  A  G  S  T  P  K  V  F  G  S  *  C  A  G  F  T  C  Q  *  L  G  P  *  A  G  R   : G  E  S  Q  N  H  *  R  D  P  L  G  S  R  E  D  L  G  V  A  S  W  C  Y  I  K  H  *  K  C  S  C  S  S  R  Y  S  R  E  F  G  S  W  W  L  S  H  *  S  T  R  H  W  W  Y  D  A  R  D  A  R  S  K  E  D  A  W  D  A  R  N  G  *  *  Q  L  G  S  S  *  V  T  N  A  E  R  C  S  A  T  I  D  W  E  V  A  G  L  E  H  K  T  V  A  S  G  *  Q  C  R  H  E  W  Q  E  *  C  S  L  T  R  *  W  W  T  S  C  P  T  I  R  L  C  L  W  Y  G  A  C  I  T  S  S  S  T  S  *  A  I  S  N  *  Y  R  F  A  C  C  W  E  T  S  G  S  S  C  K  V  K  S  *  G  A  E  K  K  N  S  F  T  F  G  G  I  F  *  C  S  D  F  G  *  S  L  T  V  H  *  G  T  Q  I  P  C  L  L  S  *  G  C  R  E  S  H  I  T  R  T  G  Q  K  P  T  T  R  *  T  S  C  T  T  S  *  A  L  V  C  *  K  G  F  Y  C  Y  R  L  G  Y  W  M  L  E  L  C  F  S  I  G  R  S  C  N  G  F  T  K  S  T  S  K  F  R  G  D  N  F  E  A  S  F  D  G  G  N  G  L  Q  V  G  E  *  D  P  A  E  G  N  R  *  L  I  P  E  G  L  I  C  C  H  H  E  S  Y  *  L  *  P  Y  W  S  R  S  V  R  L  T  S  T  *  C  Q  S  L  Q  K  S  V  P  V  K  S  S  N  P  R  Q  W  N  V  L  H  I  T  Y  P  R  D  G  L  S  V  V  L  S  G  L  K  Q  L  Y  H  S  F  S  S  L  E  L  *  *  R  T  G  E  F  M  *  V  V  Y  F  S  Q  S  V  F  I  R  R  R  K  T  V  L  Q  H  G  K  L  Y  A  I  F  A  *  G  N  G  L  L  D  G  V  Q  P  F  C  I  T  L  V  F  H  L  F  F  P  V  D  L  L  Y  *  V  L  S  N  L  *  V  H  K  M  Q  L  F  L  S  L  H  H  F  K  A  E  F  D  N  :  K  N  K  E  K  L </first_frame>
            <second_frame>  V  E  K  R  G  K  A  I  S  L  F  L  S  L  S  K  N  S  Y  F  L  S  L  K  I  *  S  F  V  S  L  Y  T  Y  R  Y  T  F  I  C  I  Y  S  F  L  L  I  R  F  W  F  R  F  A  I  F  L  F  V  C  G  G  V  R  I  D  R  T  V  E  N  *  G  M  Q  A  D  Q  T  V  I  S  L  R  P  G  G  G  N  R  G  G  G  S  R  V  F  G  S  R  F  D  T  S  S  T  N  S  D  L  S  G  F  R  P  H  G  G  S  S  S  L  P  S  F  K  :  T  G  D  S  R  F  D  S  H  E  R  V  R  Y  T  R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G :   I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  :  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  F  N  Q  L  K  E  L  S  T  N  P  Q  L  V  A  R  L  R  F  L  V  R  D  V  L  D  L  R  A  N  N  W  V  P  R  R  E  E  :  V  K  A  K  T  I  N  E  I  H  S  E  A  E  K  T  L  G  L  R  P  G  A  T  L  S  I  R  N  A  R  A  P  P  G  I  Q  G  N  L  G  P  G  G  Y  P  I  N  R  P  G  T  G  G  M  M  P  G  M  P  G  A  R  K  M  P  G  M  P  G  M  D  N  D  N  W  E  V  P  R  S  R  M  P  R  G  A  Q  Q  P  L  I  G  K  S  P  A  L  N  T  R  L  L  P  Q  G  S  N  V  G  M  S  G  R  S  S  A  L  L  Q  G  S  G  G  P  P  V  R  P  S  G  Y  V  S  G  M  E  P  V  S  Q  V  P  V  P  V  K  P  S  P  T  S  T  V  L  P  V  A  G  K  P  Q  A  P  A  A  R  S  N  P  E  E  L  K  R  K  T  V  S  L  L  E  E  Y  F  S  V  R  I  L  D  E  A  L  Q  C  I  E  E  L  K  S  P  A  F  Y  P  E  V  V  E  K  A  I  S  L  G  L  D  K  S  P  P  R  V  E  P  V  A  Q  L  L  E  H  L  S  A  E  K  V  F  T  A  T  D  L  A  T  G  C  L  N  F  A  S  Q  L  E  D  L  A  M  D  L  P  K  A  P  A  N  F  G  E  I  I  S  R  L  V  L  T  G  A  M  D  F  K  L  V  N  E  I  L  Q  K  V  T  D  D  L  Y  Q  K  D  L  F  A  A  I  M  K  A  I  S  S  S  P  T  G  Q  G  V  L  D  S  Q  A  P  D  V  K  A  C  K  N  L  F  Q  *  K  A  Q  I  L  V  N  G  M  C  S  I  S  L  I  L  E  M  A  F  P  L  C  S  V  D  *  S  S  C  I  T  V  F  H  H  W  N  C  S  K  G  Q  V  S  L  C  E  L  Y  T  F  P  K  V  C  S  L  D  D  E  R  Q  F  C  N  M  V  N  Y  T  P  Y  L  L  E  A  T  G  C  L  T  E  S  S  R  F  V  L  H  *  F  F  I  Y  F  F  P  L  T  C  Y  I  K  F  C  R  T  C  E  F  I  K  C  N  C  S  Y  L  Y  T  I  L  K  L  N  L  I  T :   K  I  K  K  N   </second_frame>
            <third_frame>   *  R  R  E  E  K  Q  Y  L  S  F  S  L  S  L  K  I  L  T  F  S  L  *  K  S  N  L  L  Y  L  Y  T  H  I  D  T  R  L  S  V  S  I  A  F  C  *  F  V  F  G  L  D  L  P  F  F  F  L  C  V  E  V  F  E  L  I  G  L  W  R  I  E  V  C  R  L  I  R  R  *  *  V  *  D  Q  V  V  V  T  E  V  V  E  A  E  Y  L  A  L  A  L  I  P  H  L  P  I  L  I  S  Q  V  F  V  L  M  E  V  L  H  L  C  H  L  S  R :   L  E  I  L  V  L  T  A  M  N  V  F  A  I  L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R   : E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R :   N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I  S  T  N  *  K  N  Y  R  Q  T  L  S  W  *  H  A  *  G  F  W  F  V  M  C  W  I  Y  V  P  I  T  G  S  L  G  G  K  R :   *  K  P  K  P  L  T  R  S  T  R  K  Q  R  R  P  W  G  C  V  L  V  L  H  *  A  L  E  M  L  V  L  L  Q  V  F  K  G  I  W  V  L  V  A  I  P  L  I  D  P  A  L  V  V  *  C  Q  G  C  Q  E  Q  G  R  C  L  G  C  Q  E  W  I  M  T  T  G  K  F  L  G  H  E  C  R  E  V  L  S  N  H  *  L  G  S  R  R  P  *  T  Q  D  C  C  L  R  V  A  M  S  A  *  V  A  G  V  V  L  S  Y  K  V  V  V  D  L  L  S  D  H  Q  A  M  S  L  V  W  S  L  Y  H  K  F  Q  Y  Q  L  S  H  L  Q  L  V  P  F  C  L  L  L  G  N  L  R  L  Q  L  Q  G  Q  I  L  R  S  *  K  E  K  Q  F  H  F  W  R  N  I  L  V  F  G  F  W  M  K  P  Y  S  A  L  R  N  S  N  P  L  P  S  I  L  R  L  S  R  K  P  Y  H  S  D  W  T  K  A  H  H  A  L  N  Q  L  H  N  F  L  S  T  C  L  L  K  R  F  L  L  L  Q  T  W  L  L  D  A  *  T  L  L  L  N  W  K  I  L  Q  W  I  Y  Q  K  H  Q  Q  I  S  G  R  *  F  R  G  *  F  *  R  G  Q  W  T  S  S  W  *  M  R  S  C  R  R  *  P  M  T  Y  T  R  R  T  Y  L  L  P  S  *  K  L  L  A  L  A  L  L  V  K  E  C  *  T  H  K  H  L  M  S  K  P  A  K  I  C  S  S  K  K  L  K  S  S  S  M  E  C  A  P  Y  H  L  S  S  R  W  P  F  R  C  A  Q  W  T  K  A  A  V  S  Q  F  F  I  I  G  T  V  V  K  D  R  *  V  Y  V  S  C  I  L  F  P  K  C  V  H  *  T  T  K  D  S  F  A  T  W  *  I  I  R  H  I  C  L  R  Q  R  A  A  *  R  S  P  A  V  L  Y  Y  I  S  F  S  F  I  F  S  R  *  L  V  I  L  S  F  V  E  L  V  S  S  *  N  A  T  V  P  I  F  T  P  F  *  S  *  I  *  *   : Q  K  *  R  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64321" stop="64482"/>
                    <exon start="67519" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69047"/>
                    <exon start="69317" stop="69404"/>
                    <exon start="69495" stop="69845"/>
                    <exon start="69954" stop="70196"/>
                    <exon start="70277" stop="71293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2322</number_coding_nucleotides>
                  <number_encoded_amino_acids>774</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQADQTVISLRPGGGNRGGGSRVFGSRFDTSSTNSDLSGFRPHGGSSSLPSFKTGDSRFDSHERVRYTRDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIYFNQLKELSTNPQLVARLRFLVRDVLDLRANNWVPRREEVKAKTINEIHSEAEKTLGLRPGATLSIRNARAPPGIQGNLGPGGYPINRPGTGGMMPGMPGARKMPGMPGMDNDNWEVPRSRMPRGAQQPLIGKSPALNTRLLPQGSNVGMSGRSSALLQGSGGPPVRPSGYVSGMEPVSQVPVPVKPSPTSTVLPVAGKPQAPAARSNPEELKRKTVSLLEEYFSVRILDEALQCIEELKSPAFYPEVVEKAISLGLDKSPPRVEPVAQLLEHLSAEKVFTATDLATGCLNFASQLEDLAMDLPKAPANFGEIISRLVLTGAMDFKLVNEILQKVTDDLYQKDLFAAIMKAISSSPTGQGVLDSQAPDVKACKNLFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64104" e_stop="64482"/>
            <exon e_start="67519" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69047"/>
            <exon e_start="69317" e_stop="69404"/>
            <exon e_start="69495" e_stop="70196"/>
            <exon e_start="70277" e_stop="71704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64104" e_stop="64482" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67519" e_stop="67590" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68950" e_stop="69047" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69317" e_stop="69404" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69495" e_stop="70196" e_length="702"/>
          </exon>
          <intron i_serial="7" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.999">
            <gDNA_exon_boundary e_start="70277" e_stop="71704" e_length="1428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64108" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="67942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64125" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64131" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64135" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67564" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69047"/>
              <exon start="69317" stop="69404"/>
              <exon start="69495" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69496" stop="70196"/>
              <exon start="70277" stop="70431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69961" stop="70196"/>
              <exon start="70277" stop="70581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70562" stop="71340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70597" stop="71439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70668" stop="71454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70677" stop="71412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70678" stop="71070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70908" stop="71694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="71704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71099" stop="71435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71153" stop="71671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71182" stop="71437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71183" stop="71679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71290" stop="71662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG : ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG : AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG : GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCT</gDNA_template>
            <first_frame> S  R  E  E  R  K  S  N  I  S  L  S  L  S  L  *  K  F  L  L  S  L  S  K  N  L  I  F  C  I  S  I  H  I  *  I  H  V  Y  L  Y  L  *  L  F  V  D  S  F  L  V  *  I  C  H  F  S  F  C  V  W  R  C  S  N  *  S  D  C  G  E  L  R  Y  A  G  *  S  D  G  D  K  F  E  T  R  W  W  *  Q  R  W  W  K  Q  S  I  W  L  S  L  *  Y  L  I  Y  Q  F  *  S  L  R  F  S  S  S  W  R  F  F  I  F  A  I  F  Q   : D  W  R  F  S  F  *  Q  P  *  T  C  S  L  Y  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  :  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S  G  Y  *  L  F  S  I  S  L  I  I  F  L  V  L  S  L  I  N  V  T  N  I  S  I  L  W  K  I  V  F  L  I  L  L  T  G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I  F  Q  P  I  E  R  T  I  D  K  P  S  A  G  S  T  P  K  V  F  G  S  *  C  A  G  F  T  C  Q  *  L  G  P  *  A  G  R   : G  E  S  Q  N  H  *  R  D  P  L  G  S  R  E  D  L  G  V  A  S  W  C  Y  I  K  H  *  K  C  S  C  S  S  R  Y  S  R  E  F  G  S  W  W  L  S  H  *  S  T  R  H  W  W  Y  D  A  R  D  A  R  S  K  E  D  A  W  D  A  R  N  G  *  *  Q  L  G  S  S  *  V  T  N  A  E  R  C  S  A  T  I  D  W  E  V  A  G  L  E  H  K  T  V  A  S  G  *  Q  C  R  H  E  W  Q  E  *  C  S  L  T  R  *  W  W  T  S  C  P  T  I  R  L  C  L  W  Y  G  A  C  I  T  S  S  S  T  S  *  A  I  S  N  *  Y  R  F  A  C  C  W  E  T  S  G  S  S  C  K  V  K  S  *  G  A  E  K  K  N  S  F  T  F  G  G  I  F  *  C  S  D  F  G  *  S  L  T  V  H  *  G  T  Q  I  P  C  L  L  S  *  G  C  R  E  S  H  I  T  R  T  G  Q  K  P  T  T  R  *  T  S  C  T  T  S  *  A  L  V  C  *  K  G  F  Y  C  Y  R  L  G  Y  W  M  L  E  L  C  F  S  I  G  R  S  C  N  G  F  T  K  S  T  S  K  F  R  G  D  N  F  E  A  S  F  D  G  G  N  G  L  Q  V  G  E  *  D  P  A  E  G  N  R  *  L  I  P  E  G  L  I  C  C  H  H  E  S  Y  *  L  *  P  Y  W  S  R  S  V  R  L  T  S  T  *  C  Q  S  L  Q  K  S  V  P  V  K  S  S  N  P  R  Q  W  N  V  L  H  I  T  Y  P  R  D  G  L  S  V  V  L  S  G  L  K  Q  L  Y  H  S  F  S  S  L  E  L  *  *  R  T  G  E  F  M  *  V  V  Y  F  S  Q  S  V  F  I  R  R  R  K  T  V  L  Q  H  G  K  L  Y  A  I  F  A  *  G  N  G  L  L  D  G  V  Q  P  F  C  I  T  L  V  F  H  L  F  F  P  V  D  L  L  Y  *  V  L  S  N  L  *  V  H  K  M  Q  L  F  L  S  L  H  H  F  K  A  E  F  D  N  V  S  L  S  S  V  Y  L  </first_frame>
            <second_frame>  V  E  K  R  G  K  A  I  S  L  F  L  S  L  S  K  N  S  Y  F  L  S  L  K  I  *  S  F  V  S  L  Y  T  Y  R  Y  T  F  I  C  I  Y  S  F  L  L  I  R  F  W  F  R  F  A  I  F  L  F  V  C  G  G  V  R  I  D  R  T  V  E  N  *  G  M  Q  A  D  Q  T  V  I  S  L  R  P  G  G  G  N  R  G  G  G  S  R  V  F  G  S  R  F  D  T  S  S  T  N  S  D  L  S  G  F  R  P  H  G  G  S  S  S  L  P  S  F  K  :  T  G  D  S  R  F  D  S  H  E  R  V  R  Y  T  R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G :   I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  V  I  D  C  F  L  L  A  *  *  S  S  W  S  F  P  S  *  M  *  P  I  Y  Q  F  C  G  K  L  S  S  *  S  C  L  Q  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  F  N  Q  L  K  E  L  S  T  N  P  Q  L  V  A  R  L  R  F  L  V  R  D  V  L  D  L  R  A  N  N  W  V  P  R  R  E  E  :  V  K  A  K  T  I  N  E  I  H  S  E  A  E  K  T  L  G  L  R  P  G  A  T  L  S  I  R  N  A  R  A  P  P  G  I  Q  G  N  L  G  P  G  G  Y  P  I  N  R  P  G  T  G  G  M  M  P  G  M  P  G  A  R  K  M  P  G  M  P  G  M  D  N  D  N  W  E  V  P  R  S  R  M  P  R  G  A  Q  Q  P  L  I  G  K  S  P  A  L  N  T  R  L  L  P  Q  G  S  N  V  G  M  S  G  R  S  S  A  L  L  Q  G  S  G  G  P  P  V  R  P  S  G  Y  V  S  G  M  E  P  V  S  Q  V  P  V  P  V  K  P  S  P  T  S  T  V  L  P  V  A  G  K  P  Q  A  P  A  A  R  S  N  P  E  E  L  K  R  K  T  V  S  L  L  E  E  Y  F  S  V  R  I  L  D  E  A  L  Q  C  I  E  E  L  K  S  P  A  F  Y  P  E  V  V  E  K  A  I  S  L  G  L  D  K  S  P  P  R  V  E  P  V  A  Q  L  L  E  H  L  S  A  E  K  V  F  T  A  T  D  L  A  T  G  C  L  N  F  A  S  Q  L  E  D  L  A  M  D  L  P  K  A  P  A  N  F  G  E  I  I  S  R  L  V  L  T  G  A  M  D  F  K  L  V  N  E  I  L  Q  K  V  T  D  D  L  Y  Q  K  D  L  F  A  A  I  M  K  A  I  S  S  S  P  T  G  Q  G  V  L  D  S  Q  A  P  D  V  K  A  C  K  N  L  F  Q  *  K  A  Q  I  L  V  N  G  M  C  S  I  S  L  I  L  E  M  A  F  P  L  C  S  V  D  *  S  S  C  I  T  V  F  H  H  W  N  C  S  K  G  Q  V  S  L  C  E  L  Y  T  F  P  K  V  C  S  L  D  D  E  R  Q  F  C  N  M  V  N  Y  T  P  Y  L  L  E  A  T  G  C  L  T  E  S  S  R  F  V  L  H  *  F  F  I  Y  F  F  P  L  T  C  Y  I  K  F  C  R  T  C  E  F  I  K  C  N  C  S  Y  L  Y  T  I  L  K  L  N  L  I  T  *  V  C  L  Q  F  I  S </second_frame>
            <third_frame>   *  R  R  E  E  K  Q  Y  L  S  F  S  L  S  L  K  I  L  T  F  S  L  *  K  S  N  L  L  Y  L  Y  T  H  I  D  T  R  L  S  V  S  I  A  F  C  *  F  V  F  G  L  D  L  P  F  F  F  L  C  V  E  V  F  E  L  I  G  L  W  R  I  E  V  C  R  L  I  R  R  *  *  V  *  D  Q  V  V  V  T  E  V  V  E  A  E  Y  L  A  L  A  L  I  P  H  L  P  I  L  I  S  Q  V  F  V  L  M  E  V  L  H  L  C  H  L  S  R :   L  E  I  L  V  L  T  A  M  N  V  F  A  I  L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R   : E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R  L  L  I  V  F  Y  *  L  N  N  L  L  G  P  F  P  H  K  C  N  Q  Y  I  N  F  V  E  N  C  L  P  D  L  A  Y  R  N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I  S  T  N  *  K  N  Y  R  Q  T  L  S  W  *  H  A  *  G  F  W  F  V  M  C  W  I  Y  V  P  I  T  G  S  L  G  G  K  R :   *  K  P  K  P  L  T  R  S  T  R  K  Q  R  R  P  W  G  C  V  L  V  L  H  *  A  L  E  M  L  V  L  L  Q  V  F  K  G  I  W  V  L  V  A  I  P  L  I  D  P  A  L  V  V  *  C  Q  G  C  Q  E  Q  G  R  C  L  G  C  Q  E  W  I  M  T  T  G  K  F  L  G  H  E  C  R  E  V  L  S  N  H  *  L  G  S  R  R  P  *  T  Q  D  C  C  L  R  V  A  M  S  A  *  V  A  G  V  V  L  S  Y  K  V  V  V  D  L  L  S  D  H  Q  A  M  S  L  V  W  S  L  Y  H  K  F  Q  Y  Q  L  S  H  L  Q  L  V  P  F  C  L  L  L  G  N  L  R  L  Q  L  Q  G  Q  I  L  R  S  *  K  E  K  Q  F  H  F  W  R  N  I  L  V  F  G  F  W  M  K  P  Y  S  A  L  R  N  S  N  P  L  P  S  I  L  R  L  S  R  K  P  Y  H  S  D  W  T  K  A  H  H  A  L  N  Q  L  H  N  F  L  S  T  C  L  L  K  R  F  L  L  L  Q  T  W  L  L  D  A  *  T  L  L  L  N  W  K  I  L  Q  W  I  Y  Q  K  H  Q  Q  I  S  G  R  *  F  R  G  *  F  *  R  G  Q  W  T  S  S  W  *  M  R  S  C  R  R  *  P  M  T  Y  T  R  R  T  Y  L  L  P  S  *  K  L  L  A  L  A  L  L  V  K  E  C  *  T  H  K  H  L  M  S  K  P  A  K  I  C  S  S  K  K  L  K  S  S  S  M  E  C  A  P  Y  H  L  S  S  R  W  P  F  R  C  A  Q  W  T  K  A  A  V  S  Q  F  F  I  I  G  T  V  V  K  D  R  *  V  Y  V  S  C  I  L  F  P  K  C  V  H  *  T  T  K  D  S  F  A  T  W  *  I  I  R  H  I  C  L  R  Q  R  A  A  *  R  S  P  A  V  L  Y  Y  I  S  F  S  F  I  F  S  R  *  L  V  I  L  S  F  V  E  L  V  S  S  *  N  A  T  V  P  I  F  T  P  F  *  S  *  I  *  *  R  K  F  V  F  S  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69942" stop="70196"/>
                    <exon start="70277" stop="71293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIYFNQLKELSTNPQLVARLRFLVRDVLDLRANNWVPRREEVKAKTINEIHSEAEKTLGLRPGATLSIRNARAPPGIQGNLGPGGYPINRPGTGGMMPGMPGARKMPGMPGMDNDNWEVPRSRMPRGAQQPLIGKSPALNTRLLPQGSNVGMSGRSSALLQGSGGPPVRPSGYVSGMEPVSQVPVPVKPSPTSTVLPVAGKPQAPAARSNPEELKRKTVSLLEEYFSVRILDEALQCIEELKSPAFYPEVVEKAISLGLDKSPPRVEPVAQLLEHLSAEKVFTATDLATGCLNFASQLEDLAMDLPKAPANFGEIISRLVLTGAMDFKLVNEILQKVTDDLYQKDLFAAIMKAISSSPTGQGVLDSQAPDVKACKNLFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64321" stop="64482"/>
                    <exon start="67519" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69047"/>
                    <exon start="69317" stop="69404"/>
                    <exon start="69495" stop="69872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQADQTVISLRPGGGNRGGGSRVFGSRFDTSSTNSDLSGFRPHGGSSSLPSFKTGDSRFDSHERVRYTRDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQVIDCFLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="64104" e_stop="64482"/>
            <exon e_start="67519" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69047"/>
            <exon e_start="69317" e_stop="69404"/>
            <exon e_start="69495" e_stop="69845"/>
            <exon e_start="69954" e_stop="70196"/>
            <exon e_start="70277" e_stop="71664"/>
            <exon e_start="75051" e_stop="75075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.760"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64104" e_stop="64482" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67519" e_stop="67590" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68950" e_stop="69047" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69317" e_stop="69404" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69495" e_stop="69845" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69954" e_stop="70196" e_length="243"/>
          </exon>
          <intron i_serial="8" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.999">
            <gDNA_exon_boundary e_start="70277" e_stop="71664" e_length="1388"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71665" i_stop="75050" i_length="3386"/>
          </intron>
          <exon e_serial="10" e_score="0.760">
            <gDNA_exon_boundary e_start="75051" e_stop="75075" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64108" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="67942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64125" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64131" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64135" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67564" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69047"/>
              <exon start="69317" stop="69404"/>
              <exon start="69495" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69394" stop="69404"/>
              <exon start="69495" stop="69845"/>
              <exon start="69954" stop="69983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69513" stop="69845"/>
              <exon start="69954" stop="70164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69646" stop="69845"/>
              <exon start="69954" stop="70156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69961" stop="70196"/>
              <exon start="70277" stop="70581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70562" stop="71340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70597" stop="71439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70668" stop="71454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70677" stop="71412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70678" stop="71070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71099" stop="71435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71108" stop="71664"/>
              <exon start="75051" stop="75075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71182" stop="71437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71290" stop="71662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG : ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG : AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG : GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG : GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAA : ACAAAAAAAAACACTAGATGATTTC</gDNA_template>
            <first_frame> S  R  E  E  R  K  S  N  I  S  L  S  L  S  L  *  K  F  L  L  S  L  S  K  N  L  I  F  C  I  S  I  H  I  *  I  H  V  Y  L  Y  L  *  L  F  V  D  S  F  L  V  *  I  C  H  F  S  F  C  V  W  R  C  S  N  *  S  D  C  G  E  L  R  Y  A  G  *  S  D  G  D  K  F  E  T  R  W  W  *  Q  R  W  W  K  Q  S  I  W  L  S  L  *  Y  L  I  Y  Q  F  *  S  L  R  F  S  S  S  W  R  F  F  I  F  A  I  F  Q   : D  W  R  F  S  F  *  Q  P  *  T  C  S  L  Y  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  :  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S   : G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I  F  Q  P  I  E  R  T  I  D  K  P  S  A  G  S  T  P  K  V  F  G  S  *  C  A  G  F  T  C  Q  *  L  G  P  *  A  G  R   : G  E  S  Q  N  H  *  R  D  P  L  G  S  R  E  D  L  G  V  A  S  W  C  Y  I  K  H  *  K  C  S  C  S  S  R  Y  S  R  E  F  G  S  W  W  L  S  H  *  S  T  R  H  W  W  Y  D  A  R  D  A  R  S  K  E  D  A  W  D  A  R  N  G  *  *  Q  L  G  S  S  *  V  T  N  A  E  R  C  S  A  T  I  D  W  E  V  A  G  L  E  H  K  T  V  A  S  G  *  Q  C  R  H  E  W  Q  E  *  C  S  L  T  R  *  W  W  T  S  C  P  T  I  R  L  C  L  W  Y  G  A  C  I  T  S  S  S  T  S  *  A  I  S  N  *  Y  R  F  A  C  C  W  E  T  S  G  S  S  C  K  V  K  S  *  G  A  E  K  K  N  S  F  T  F  G  G  I  F  *  C  S  D  F  G  *  S  L  T  V  H  *  G  T  Q  I  P  C  L  L  S  *  G  C  R  E  S  H  I  T  R  T  G  Q  K  P  T  T  R  *  T  S  C  T  T  S  *  A  L  V  C  *  K  G  F  Y  C  Y  R  L  G  Y  W  M  L  E  L  C  F  S  I  G  R  S  C  N  G  F  T  K  S  T  S  K  F  R  G  D  N  F  E  A  S  F  D  G  G  N  G  L  Q  V  G  E  *  D  P  A  E  G  N  R  *  L  I  P  E  G  L  I  C  C  H  H  E  S  Y  *  L  *  P  Y  W  S  R  S  V  R  L  T  S  T  *  C  Q  S  L  Q  K  S  V  P  V  K  S  S  N  P  R  Q  W  N  V  L  H  I  T  Y  P  R  D  G  L  S  V  V  L  S  G  L  K  Q  L  Y  H  S  F  S  S  L  E  L  *  *  R  T  G  E  F  M  *  V  V  Y  F  S  Q  S  V  F  I  R  R  R  K  T  V  L  Q  H  G  K  L  Y  A  I  F  A  *  G  N  G  L  L  D  G  V  Q  P  F  C  I  T  L  V  F  H  L  F  F  P  V  D  L  L  Y  *  V  L  S  N  L  *  V  H  K  M  Q  L  F  L  S  L  H  H  F  K  :  T  K  K  N  T  R  *  F  </first_frame>
            <second_frame>  V  E  K  R  G  K  A  I  S  L  F  L  S  L  S  K  N  S  Y  F  L  S  L  K  I  *  S  F  V  S  L  Y  T  Y  R  Y  T  F  I  C  I  Y  S  F  L  L  I  R  F  W  F  R  F  A  I  F  L  F  V  C  G  G  V  R  I  D  R  T  V  E  N  *  G  M  Q  A  D  Q  T  V  I  S  L  R  P  G  G  G  N  R  G  G  G  S  R  V  F  G  S  R  F  D  T  S  S  T  N  S  D  L  S  G  F  R  P  H  G  G  S  S  S  L  P  S  F  K  :  T  G  D  S  R  F  D  S  H  E  R  V  R  Y  T  R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G :   I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  :  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  F  N  Q  L  K  E  L  S  T  N  P  Q  L  V  A  R  L  R  F  L  V  R  D  V  L  D  L  R  A  N  N  W  V  P  R  R  E  E  :  V  K  A  K  T  I  N  E  I  H  S  E  A  E  K  T  L  G  L  R  P  G  A  T  L  S  I  R  N  A  R  A  P  P  G  I  Q  G  N  L  G  P  G  G  Y  P  I  N  R  P  G  T  G  G  M  M  P  G  M  P  G  A  R  K  M  P  G  M  P  G  M  D  N  D  N  W  E  V  P  R  S  R  M  P  R  G  A  Q  Q  P  L  I  G  K  S  P  A  L  N  T  R  L  L  P  Q  G  S  N  V  G  M  S  G  R  S  S  A  L  L  Q  G  S  G  G  P  P  V  R  P  S  G  Y  V  S  G  M  E  P  V  S  Q  V  P  V  P  V  K  P  S  P  T  S  T  V  L  P  V  A  G  K  P  Q  A  P  A  A  R  S  N  P  E  E  L  K  R  K  T  V  S  L  L  E  E  Y  F  S  V  R  I  L  D  E  A  L  Q  C  I  E  E  L  K  S  P  A  F  Y  P  E  V  V  E  K  A  I  S  L  G  L  D  K  S  P  P  R  V  E  P  V  A  Q  L  L  E  H  L  S  A  E  K  V  F  T  A  T  D  L  A  T  G  C  L  N  F  A  S  Q  L  E  D  L  A  M  D  L  P  K  A  P  A  N  F  G  E  I  I  S  R  L  V  L  T  G  A  M  D  F  K  L  V  N  E  I  L  Q  K  V  T  D  D  L  Y  Q  K  D  L  F  A  A  I  M  K  A  I  S  S  S  P  T  G  Q  G  V  L  D  S  Q  A  P  D  V  K  A  C  K  N  L  F  Q  *  K  A  Q  I  L  V  N  G  M  C  S  I  S  L  I  L  E  M  A  F  P  L  C  S  V  D  *  S  S  C  I  T  V  F  H  H  W  N  C  S  K  G  Q  V  S  L  C  E  L  Y  T  F  P  K  V  C  S  L  D  D  E  R  Q  F  C  N  M  V  N  Y  T  P  Y  L  L  E  A  T  G  C  L  T  E  S  S  R  F  V  L  H  *  F  F  I  Y  F  F  P  L  T  C  Y  I  K  F  C  R  T  C  E  F  I  K  C  N  C  S  Y  L  Y  T  I  L  K :   Q  K  K  T  L  D  D  F </second_frame>
            <third_frame>   *  R  R  E  E  K  Q  Y  L  S  F  S  L  S  L  K  I  L  T  F  S  L  *  K  S  N  L  L  Y  L  Y  T  H  I  D  T  R  L  S  V  S  I  A  F  C  *  F  V  F  G  L  D  L  P  F  F  F  L  C  V  E  V  F  E  L  I  G  L  W  R  I  E  V  C  R  L  I  R  R  *  *  V  *  D  Q  V  V  V  T  E  V  V  E  A  E  Y  L  A  L  A  L  I  P  H  L  P  I  L  I  S  Q  V  F  V  L  M  E  V  L  H  L  C  H  L  S  R :   L  E  I  L  V  L  T  A  M  N  V  F  A  I  L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R   : E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R :   N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I  S  T  N  *  K  N  Y  R  Q  T  L  S  W  *  H  A  *  G  F  W  F  V  M  C  W  I  Y  V  P  I  T  G  S  L  G  G  K  R :   *  K  P  K  P  L  T  R  S  T  R  K  Q  R  R  P  W  G  C  V  L  V  L  H  *  A  L  E  M  L  V  L  L  Q  V  F  K  G  I  W  V  L  V  A  I  P  L  I  D  P  A  L  V  V  *  C  Q  G  C  Q  E  Q  G  R  C  L  G  C  Q  E  W  I  M  T  T  G  K  F  L  G  H  E  C  R  E  V  L  S  N  H  *  L  G  S  R  R  P  *  T  Q  D  C  C  L  R  V  A  M  S  A  *  V  A  G  V  V  L  S  Y  K  V  V  V  D  L  L  S  D  H  Q  A  M  S  L  V  W  S  L  Y  H  K  F  Q  Y  Q  L  S  H  L  Q  L  V  P  F  C  L  L  L  G  N  L  R  L  Q  L  Q  G  Q  I  L  R  S  *  K  E  K  Q  F  H  F  W  R  N  I  L  V  F  G  F  W  M  K  P  Y  S  A  L  R  N  S  N  P  L  P  S  I  L  R  L  S  R  K  P  Y  H  S  D  W  T  K  A  H  H  A  L  N  Q  L  H  N  F  L  S  T  C  L  L  K  R  F  L  L  L  Q  T  W  L  L  D  A  *  T  L  L  L  N  W  K  I  L  Q  W  I  Y  Q  K  H  Q  Q  I  S  G  R  *  F  R  G  *  F  *  R  G  Q  W  T  S  S  W  *  M  R  S  C  R  R  *  P  M  T  Y  T  R  R  T  Y  L  L  P  S  *  K  L  L  A  L  A  L  L  V  K  E  C  *  T  H  K  H  L  M  S  K  P  A  K  I  C  S  S  K  K  L  K  S  S  S  M  E  C  A  P  Y  H  L  S  S  R  W  P  F  R  C  A  Q  W  T  K  A  A  V  S  Q  F  F  I  I  G  T  V  V  K  D  R  *  V  Y  V  S  C  I  L  F  P  K  C  V  H  *  T  T  K  D  S  F  A  T  W  *  I  I  R  H  I  C  L  R  Q  R  A  A  *  R  S  P  A  V  L  Y  Y  I  S  F  S  F  I  F  S  R  *  L  V  I  L  S  F  V  E  L  V  S  S  *  N  A  T  V  P  I  F  T  P  F  *   : N  K  K  K  H  *  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64321" stop="64482"/>
                    <exon start="67519" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69047"/>
                    <exon start="69317" stop="69404"/>
                    <exon start="69495" stop="69845"/>
                    <exon start="69954" stop="70196"/>
                    <exon start="70277" stop="71293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2322</number_coding_nucleotides>
                  <number_encoded_amino_acids>774</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQADQTVISLRPGGGNRGGGSRVFGSRFDTSSTNSDLSGFRPHGGSSSLPSFKTGDSRFDSHERVRYTRDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIYFNQLKELSTNPQLVARLRFLVRDVLDLRANNWVPRREEVKAKTINEIHSEAEKTLGLRPGATLSIRNARAPPGIQGNLGPGGYPINRPGTGGMMPGMPGARKMPGMPGMDNDNWEVPRSRMPRGAQQPLIGKSPALNTRLLPQGSNVGMSGRSSALLQGSGGPPVRPSGYVSGMEPVSQVPVPVKPSPTSTVLPVAGKPQAPAARSNPEELKRKTVSLLEEYFSVRILDEALQCIEELKSPAFYPEVVEKAISLGLDKSPPRVEPVAQLLEHLSAEKVFTATDLATGCLNFASQLEDLAMDLPKAPANFGEIISRLVLTGAMDFKLVNEILQKVTDDLYQKDLFAAIMKAISSSPTGQGVLDSQAPDVKACKNLFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="64104" e_stop="64482"/>
            <exon e_start="67519" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69404"/>
            <exon e_start="69495" e_stop="70196"/>
            <exon e_start="70277" e_stop="71632"/>
            <exon e_start="72481" e_stop="72498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="0.998"/>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64104" e_stop="64482" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67519" e_stop="67590" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="68950" e_stop="69404" e_length="455"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69495" e_stop="70196" e_length="702"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="70277" e_stop="71632" e_length="1356"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71633" i_stop="72480" i_length="848"/>
          </intron>
          <exon e_serial="8" e_score="0.778">
            <gDNA_exon_boundary e_start="72481" e_stop="72498" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69404"/>
              <exon start="69495" stop="70196"/>
              <exon start="70277" stop="71632"/>
              <exon start="72481" stop="72498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64108" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64110" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64124" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="67942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64125" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64131" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64135" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="68979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64137" stop="64482"/>
              <exon start="67519" stop="67585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69496" stop="70196"/>
              <exon start="70277" stop="70431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69961" stop="70196"/>
              <exon start="70277" stop="70581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70562" stop="71340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70597" stop="71439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70668" stop="71454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70677" stop="71412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70678" stop="71070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71099" stop="71435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71182" stop="71437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG : ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATACGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG : GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAA : AAAAATAAAGAAAAATTA</gDNA_template>
            <first_frame> S  R  E  E  R  K  S  N  I  S  L  S  L  S  L  *  K  F  L  L  S  L  S  K  N  L  I  F  C  I  S  I  H  I  *  I  H  V  Y  L  Y  L  *  L  F  V  D  S  F  L  V  *  I  C  H  F  S  F  C  V  W  R  C  S  N  *  S  D  C  G  E  L  R  Y  A  G  *  S  D  G  D  K  F  E  T  R  W  W  *  Q  R  W  W  K  Q  S  I  W  L  S  L  *  Y  L  I  Y  Q  F  *  S  L  R  F  S  S  S  W  R  F  F  I  F  A  I  F  Q   : D  W  R  F  S  F  *  Q  P  *  T  C  S  L  Y  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  V  I  F  L  E  I  L  V  N  A  F  N  K  F  C  I  I  I  P  S  Y  F  F  T  T  S  *  K  *  G  T  A  F  L  L  Y  Y  L  F  S  I  H  G  Y  N  K  P  S  L  Q  I  N  K  K  V  S  I  R  S  W  F  Q  M  *  F  A  H  S  F  K  V  N  F  R  I  S  L  F  V  H  D  *  C  K  Y  Y  R  S  C  R  I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  V  I  D  C  F  L  L  A  *  *  S  S  W  S  F  P  S  *  M  *  P  I  Y  Q  F  C  G  K  L  S  S  *  S  C  L  Q  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  F  N  Q  L  K  E  L  S  T  N  P  Q  L  V  A  R  L  R  F  L  V  R  D  V  L  D  L  R  A  N  N  W  V  P  R  R  E  E  :  V  K  A  K  T  I  N  E  I  H  S  E  A  E  K  T  L  G  L  R  P  G  A  T  L  S  I  R  N  A  R  A  P  P  G  I  Q  G  N  L  G  P  G  G  Y  P  I  N  R  P  G  T  G  G  M  M  P  G  M  P  G  A  R  K  M  P  G  M  P  G  M  D  N  D  N  W  E  V  P  R  S  R  M  P  R  G  A  Q  Q  P  L  I  G  K  S  P  A  L  N  T  R  L  L  P  Q  G  S  N  V  G  M  S  G  R  S  S  A  L  L  Q  G  S  G  G  P  P  V  R  P  S  G  Y  V  S  G  M  E  P  V  S  Q  V  P  V  P  V  K  P  S  P  T  S  T  V  L  P  V  A  G  K  P  Q  A  P  A  A  R  S  N  P  E  E  L  K  R  K  T  V  S  L  L  E  E  Y  F  S  V  R  I  L  D  E  A  L  Q  C  I  E  E  L  K  S  P  A  F  Y  P  E  V  V  E  K  A  I  S  L  G  L  D  K  S  P  P  R  V  E  P  V  A  Q  L  L  E  H  L  S  A  E  K  V  F  T  A  T  D  L  A  T  G  C  L  N  F  A  S  Q  L  E  D  L  A  M  D  L  P  K  A  P  A  N  F  G  E  I  I  S  R  L  V  L  T  G  A  M  D  F  K  L  V  N  E  I  L  Q  K  V  T  D  D  L  Y  Q  K  D  L  F  A  A  I  M  K  A  I  S  S  S  P  T  G  Q  G  V  L  D  S  Q  A  P  D  V  K  A  C  K  N  L  F  Q  *  K  A  Q  I  L  V  N  G  M  C  S  I  S  L  I  L  E  M  A  F  P  L  C  S  V  D  *  S  S  C  I  T  V  F  H  H  W  N  C  S  K  G  Q  V  S  L  C  E  L  Y  T  F  P  K  V  C  S  L  D  D  E  R  Q  F  C  N  M  V  N  Y  T  P  Y  L  L  E  A  T  G  C  L  T  E  S  S  R  F  V  L  H  *  F  F  I  Y  F  F  P  L  T  C  Y  I  K  F  C  R  T  C  E  F  I  K  :  K  N  K  E  K  L </first_frame>
            <second_frame>  V  E  K  R  G  K  A  I  S  L  F  L  S  L  S  K  N  S  Y  F  L  S  L  K  I  *  S  F  V  S  L  Y  T  Y  R  Y  T  F  I  C  I  Y  S  F  L  L  I  R  F  W  F  R  F  A  I  F  L  F  V  C  G  G  V  R  I  D  R  T  V  E  N  *  G  M  Q  A  D  Q  T  V  I  S  L  R  P  G  G  G  N  R  G  G  G  S  R  V  F  G  S  R  F  D  T  S  S  T  N  S  D  L  S  G  F  R  P  H  G  G  S  S  S  L  P  S  F  K  :  T  G  D  S  R  F  D  S  H  E  R  V  R  Y  T  R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G  *  S  F  W  K  F  *  L  M  L  L  T  S  S  V  L  *  F  Q  A  I  F  S  P  H  L  E  S  R  E  L  H  F  F  C  T  T  F  S  L  F  M  D  I  I  S  R  H  C  K  *  I  K  R  F  Q  Y  G  L  G  F  R  C  S  L  H  I  L  L  R  *  I  L  G  Y  P  Y  L  Y  M  I  D  A  S  I  I  D  L  A  E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R  L  L  I  V  F  Y  *  L  N  N  L  L  G  P  F  P  H  K  C  N  Q  Y  I  N  F  V  E  N  C  L  P  D  L  A  Y  R  N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I  S  T  N  *  K  N  Y  R  Q  T  L  S  W  *  H  A  *  G  F  W  F  V  M  C  W  I  Y  V  P  I  T  G  S  L  G  G  K  R :   *  K  P  K  P  L  T  R  S  T  R  K  Q  R  R  P  W  G  C  V  L  V  L  H  *  A  L  E  M  L  V  L  L  Q  V  F  K  G  I  W  V  L  V  A  I  P  L  I  D  P  A  L  V  V  *  C  Q  G  C  Q  E  Q  G  R  C  L  G  C  Q  E  W  I  M  T  T  G  K  F  L  G  H  E  C  R  E  V  L  S  N  H  *  L  G  S  R  R  P  *  T  Q  D  C  C  L  R  V  A  M  S  A  *  V  A  G  V  V  L  S  Y  K  V  V  V  D  L  L  S  D  H  Q  A  M  S  L  V  W  S  L  Y  H  K  F  Q  Y  Q  L  S  H  L  Q  L  V  P  F  C  L  L  L  G  N  L  R  L  Q  L  Q  G  Q  I  L  R  S  *  K  E  K  Q  F  H  F  W  R  N  I  L  V  F  G  F  W  M  K  P  Y  S  A  L  R  N  S  N  P  L  P  S  I  L  R  L  S  R  K  P  Y  H  S  D  W  T  K  A  H  H  A  L  N  Q  L  H  N  F  L  S  T  C  L  L  K  R  F  L  L  L  Q  T  W  L  L  D  A  *  T  L  L  L  N  W  K  I  L  Q  W  I  Y  Q  K  H  Q  Q  I  S  G  R  *  F  R  G  *  F  *  R  G  Q  W  T  S  S  W  *  M  R  S  C  R  R  *  P  M  T  Y  T  R  R  T  Y  L  L  P  S  *  K  L  L  A  L  A  L  L  V  K  E  C  *  T  H  K  H  L  M  S  K  P  A  K  I  C  S  S  K  K  L  K  S  S  S  M  E  C  A  P  Y  H  L  S  S  R  W  P  F  R  C  A  Q  W  T  K  A  A  V  S  Q  F  F  I  I  G  T  V  V  K  D  R  *  V  Y  V  S  C  I  L  F  P  K  C  V  H  *  T  T  K  D  S  F  A  T  W  *  I  I  R  H  I  C  L  R  Q  R  A  A  *  R  S  P  A  V  L  Y  Y  I  S  F  S  F  I  F  S  R  *  L  V  I  L  S  F  V  E  L  V  S  S  *  K :   K  I  K  K  N   </second_frame>
            <third_frame>   *  R  R  E  E  K  Q  Y  L  S  F  S  L  S  L  K  I  L  T  F  S  L  *  K  S  N  L  L  Y  L  Y  T  H  I  D  T  R  L  S  V  S  I  A  F  C  *  F  V  F  G  L  D  L  P  F  F  F  L  C  V  E  V  F  E  L  I  G  L  W  R  I  E  V  C  R  L  I  R  R  *  *  V  *  D  Q  V  V  V  T  E  V  V  E  A  E  Y  L  A  L  A  L  I  P  H  L  P  I  L  I  S  Q  V  F  V  L  M  E  V  L  H  L  C  H  L  S  R :   L  E  I  L  V  L  T  A  M  N  V  F  A  I  L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R  G  N  L  S  G  N  S  S  *  C  F  *  Q  V  L  Y  Y  N  S  K  L  F  F  H  H  I  L  K  V  G  N  C  I  S  S  V  L  P  F  L  Y  S  W  I  *  *  A  V  I  A  N  K  *  K  G  F  N  T  V  L  V  S  D  V  V  C  T  F  F  *  G  E  F  *  D  I  L  I  C  T  *  L  M  Q  V  L  S  I  L  Q  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S  G  Y  *  L  F  S  I  S  L  I  I  F  L  V  L  S  L  I  N  V  T  N  I  S  I  L  W  K  I  V  F  L  I  L  L  T  G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I  F  Q  P  I  E  R  T  I  D  K  P  S  A  G  S  T  P  K  V  F  G  S  *  C  A  G  F  T  C  Q  *  L  G  P  *  A  G  R   : G  E  S  Q  N  H  *  R  D  P  L  G  S  R  E  D  L  G  V  A  S  W  C  Y  I  K  H  *  K  C  S  C  S  S  R  Y  S  R  E  F  G  S  W  W  L  S  H  *  S  T  R  H  W  W  Y  D  A  R  D  A  R  S  K  E  D  A  W  D  A  R  N  G  *  *  Q  L  G  S  S  *  V  T  N  A  E  R  C  S  A  T  I  D  W  E  V  A  G  L  E  H  K  T  V  A  S  G  *  Q  C  R  H  E  W  Q  E  *  C  S  L  T  R  *  W  W  T  S  C  P  T  I  R  L  C  L  W  Y  G  A  C  I  T  S  S  S  T  S  *  A  I  S  N  *  Y  R  F  A  C  C  W  E  T  S  G  S  S  C  K  V  K  S  *  G  A  E  K  K  N  S  F  T  F  G  G  I  F  *  C  S  D  F  G  *  S  L  T  V  H  *  G  T  Q  I  P  C  L  L  S  *  G  C  R  E  S  H  I  T  R  T  G  Q  K  P  T  T  R  *  T  S  C  T  T  S  *  A  L  V  C  *  K  G  F  Y  C  Y  R  L  G  Y  W  M  L  E  L  C  F  S  I  G  R  S  C  N  G  F  T  K  S  T  S  K  F  R  G  D  N  F  E  A  S  F  D  G  G  N  G  L  Q  V  G  E  *  D  P  A  E  G  N  R  *  L  I  P  E  G  L  I  C  C  H  H  E  S  Y  *  L  *  P  Y  W  S  R  S  V  R  L  T  S  T  *  C  Q  S  L  Q  K  S  V  P  V  K  S  S  N  P  R  Q  W  N  V  L  H  I  T  Y  P  R  D  G  L  S  V  V  L  S  G  L  K  Q  L  Y  H  S  F  S  S  L  E  L  *  *  R  T  G  E  F  M  *  V  V  Y  F  S  Q  S  V  F  I  R  R  R  K  T  V  L  Q  H  G  K  L  Y  A  I  F  A  *  G  N  G  L  L  D  G  V  Q  P  F  C  I  T  L  V  F  H  L  F  F  P  V  D  L  L  Y  *  V  L  S  N  L  *  V  H  K   : K  K  *  R  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69942" stop="70196"/>
                    <exon start="70277" stop="71293"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIYFNQLKELSTNPQLVARLRFLVRDVLDLRANNWVPRREEVKAKTINEIHSEAEKTLGLRPGATLSIRNARAPPGIQGNLGPGGYPINRPGTGGMMPGMPGARKMPGMPGMDNDNWEVPRSRMPRGAQQPLIGKSPALNTRLLPQGSNVGMSGRSSALLQGSGGPPVRPSGYVSGMEPVSQVPVPVKPSPTSTVLPVAGKPQAPAARSNPEELKRKTVSLLEEYFSVRILDEALQCIEELKSPAFYPEVVEKAISLGLDKSPPRVEPVAQLLEHLSAEKVFTATDLATGCLNFASQLEDLAMDLPKAPANFGEIISRLVLTGAMDFKLVNEILQKVTDDLYQKDLFAAIMKAISSSPTGQGVLDSQAPDVKACKNLFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64321" stop="64482"/>
                    <exon start="67519" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQADQTVISLRPGGGNRGGGSRVFGSRFDTSSTNSDLSGFRPHGGSSSLPSFKTGDSRFDSHERVRYTRDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69294" stop="69404"/>
                    <exon start="69495" stop="69872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKYYRSCRILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQVIDCFLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="70600" PGL_stop="70332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70600" e_stop="70332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="70600" e_stop="70332" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70600" stop="70332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCTACCCTGAGGCAACAGTCTTGTGTTCAAGGCCGGCGACTTCCCAATCAATGGTTGCTGAGCACCTCTCGGCATTCGTGACCTAGGAACTTCCCAGTTGTCATTATCCATTCCTGGCATCCCAGGCATCTTCCTTGCTCCTGGCATCCCTGGCATCATACCACCAGTGCCGGGTCGATTAATGGGATAGCCACCAGGACCCAAATTCCCTTGAATACCTGGAGGAGCACGAGCATTTCTAATGCTTAATGTAGCACCAGGACGCA</gDNA_template>
            <first_frame> I  A  T  L  R  Q  Q  S  C  V  Q  G  R  R  L  P  N  Q  W  L  L  S  T  S  R  H  S  *  P  R  N  F  P  V  V  I  I  H  S  W  H  P  R  H  L  P  C  S  W  H  P  W  H  H  T  T  S  A  G  S  I  N  G  I  A  T  R  T  Q  I  P  L  N  T  W  R  S  T  S  I  S  N  A  *  C  S  T  R  T   </first_frame>
            <second_frame>  L  L  P  *  G  N  S  L  V  F  K  A  G  D  F  P  I  N  G  C  *  A  P  L  G  I  R  D  L  G  T  S  Q  L  S  L  S  I  P  G  I  P  G  I  F  L  A  P  G  I  P  G  I  I  P  P  V  P  G  R  L  M  G  *  P  P  G  P  K  F  P  *  I  P  G  G  A  R  A  F  L  M  L  N  V  A  P  G  R  </second_frame>
            <third_frame>   C  Y  P  E  A  T  V  L  C  S  R  P  A  T  S  Q  S  M  V  A  E  H  L  S  A  F  V  T  *  E  L  P  S  C  H  Y  P  F  L  A  S  Q  A  S  S  L  L  L  A  S  L  A  S  Y  H  Q  C  R  V  D  *  W  D  S  H  Q  D  P  N  S  L  E  Y  L  E  E  H  E  H  F  *  C  L  M  *  H  Q  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0012N14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71691" PGL_stop="70989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71691" e_stop="70989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="71691" e_stop="70989" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71691" stop="70989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71685" stop="71094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71647" stop="71181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71619" stop="71054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACAAACTTACGTTATCAAATTCAGCTTTAAAATGGTGTAAAGATAGGAACAGTTGCATTTTATGAACTCACAAGTTCGACAAAACTTAATATAACAAGTCAACGGGAAAAAATAAATGAAAAACTAATGTAATACAAAACGGCTGGACTCCGTCAAGCAGCCCGTTGCCTCAAGCAAATATGGCGTATAATTTACCATGTTGCAAAACTGTCTTTCGTCGTCTAATGAACACACTTTGGGAAAAGTATACAACTCACATAAACTCACCTGTCCTTTACTACAGTTCCAATGATGAAAAACTGTGATACAGCTGCTTTAGTCCACTGAGCACAACGGAAAGGCCATCTCGAGGATAAGTGATATGGAGCACATTCCATTGACGAGGATTTGAGCTTTTTACTGGAACAGATTTTTGCAGGCTTTGACATCAGGTGCTTGTGAGTCTAACACTCCTTGACCAGTAGGGCTAGAGCTAATAGCTTTCATGATGGCAGCAAATAAGTCCTTCTGGTATAAGTCATCGGTTACCTTCTGCAGGATCTCATTCACCAACTTGAAGTCCATTGCCCCCGTCAAAACTAGCCTCGAAATTATCTCCCCGAAATTTGCTGGTGCTTTTGGTAAATCCATTGCAAGATCTTCCAATTGAGAAGCAAAGTTCAAGCATCCAGTAGCCAAGTCTGTAGCAGTAAAAACCTTTT</gDNA_template>
            <first_frame> R  Q  T  Y  V  I  K  F  S  F  K  M  V  *  R  *  E  Q  L  H  F  M  N  S  Q  V  R  Q  N  L  I  *  Q  V  N  G  K  K  *  M  K  N  *  C  N  T  K  R  L  D  S  V  K  Q  P  V  A  S  S  K  Y  G  V  *  F  T  M  L  Q  N  C  L  S  S  S  N  E  H  T  L  G  K  V  Y  N  S  H  K  L  T  C  P  L  L  Q  F  Q  *  *  K  T  V  I  Q  L  L  *  S  T  E  H  N  G  K  A  I  S  R  I  S  D  M  E  H  I  P  L  T  R  I  *  A  F  Y  W  N  R  F  L  Q  A  L  T  S  G  A  C  E  S  N  T  P  *  P  V  G  L  E  L  I  A  F  M  M  A  A  N  K  S  F  W  Y  K  S  S  V  T  F  C  R  I  S  F  T  N  L  K  S  I  A  P  V  K  T  S  L  E  I  I  S  P  K  F  A  G  A  F  G  K  S  I  A  R  S  S  N  *  E  A  K  F  K  H  P  V  A  K  S  V  A  V  K  T  F  </first_frame>
            <second_frame>  D  K  L  T  L  S  N  S  A  L  K  W  C  K  D  R  N  S  C  I  L  *  T  H  K  F  D  K  T  *  Y  N  K  S  T  G  K  N  K  *  K  T  N  V  I  Q  N  G  W  T  P  S  S  S  P  L  P  Q  A  N  M  A  Y  N  L  P  C  C  K  T  V  F  R  R  L  M  N  T  L  W  E  K  Y  T  T  H  I  N  S  P  V  L  Y  Y  S  S  N  D  E  K  L  *  Y  S  C  F  S  P  L  S  T  T  E  R  P  S  R  G  *  V  I  W  S  T  F  H  *  R  G  F  E  L  F  T  G  T  D  F  C  R  L  *  H  Q  V  L  V  S  L  T  L  L  D  Q  *  G  *  S  *  *  L  S  *  W  Q  Q  I  S  P  S  G  I  S  H  R  L  P  S  A  G  S  H  S  P  T  *  S  P  L  P  P  S  K  L  A  S  K  L  S  P  R  N  L  L  V  L  L  V  N  P  L  Q  D  L  P  I  E  K  Q  S  S  S  I  Q  *  P  S  L  *  Q  *  K  P  F </second_frame>
            <third_frame>   T  N  L  R  Y  Q  I  Q  L  *  N  G  V  K  I  G  T  V  A  F  Y  E  L  T  S  S  T  K  L  N  I  T  S  Q  R  E  K  I  N  E  K  L  M  *  Y  K  T  A  G  L  R  Q  A  A  R  C  L  K  Q  I  W  R  I  I  Y  H  V  A  K  L  S  F  V  V  *  *  T  H  F  G  K  S  I  Q  L  T  *  T  H  L  S  F  T  T  V  P  M  M  K  N  C  D  T  A  A  L  V  H  *  A  Q  R  K  G  H  L  E  D  K  *  Y  G  A  H  S  I  D  E  D  L  S  F  L  L  E  Q  I  F  A  G  F  D  I  R  C  L  *  V  *  H  S  L  T  S  R  A  R  A  N  S  F  H  D  G  S  K  *  V  L  L  V  *  V  I  G  Y  L  L  Q  D  L  I  H  Q  L  E  V  H  C  P  R  Q  N  *  P  R  N  Y  L  P  E  I  C  W  C  F  W  *  I  H  C  K  I  F  Q  L  R  S  K  V  Q  A  S  S  S  Q  V  C  S  S  K  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0012N14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73624" PGL_stop="73046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73624" e_stop="73521"/>
            <exon e_start="73425" e_stop="73046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.971"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="73624" e_stop="73521" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73520" i_stop="73426" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="73425" e_stop="73046" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73624" stop="73521"/>
              <exon start="73425" stop="73046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGCAGCTCGCCAACTTTTGATTTAAATCAGGATGCTGGTCATAGTGGCAAAGAAACTGCATTGCCCACTCGTGCTCCGGTCTTTGATTTGAATGAGATCTCG : ATGGGAGAAGAGGAAAGAGATGGAAATTCTGAGCAGGTGCAGCTCGAGGAGCCAAAGAGAAGTCCAATCCAAAACCTCAATGATGATGTGAAGCTATTGGTGTGTAGAAATGTTGGAGAAGACACTTCTCGGTTGGGAAAACAAAAATTATCTTGGCAAGACCCTGTTGCTTTGAGGGTTTGATCCGTCTTCCACCGTCTAGTTAAATGTGGTAAGAAACTTGTGTGTTAATGCTGAGCATTGTCGAACTTGTGTTGACATGTAGGCTAGCACATTATTATCCTTTTAGTGTAAAGAAACTTCTTATACATGTAATACATGCATACTATATGTTCATTGCTAGCAACGAGATGTGGTCCGTATGATTCATCCTCTACATT</gDNA_template>
            <first_frame> R  A  A  R  Q  L  L  I  *  I  R  M  L  V  I  V  A  K  K  L  H  C  P  L  V  L  R  S  L  I  *  M  R  S  R :   W  E  K  R  K  E  M  E  I  L  S  R  C  S  S  R  S  Q  R  E  V  Q  S  K  T  S  M  M  M  *  S  Y  W  C  V  E  M  L  E  K  T  L  L  G  W  E  N  K  N  Y  L  G  K  T  L  L  L  *  G  F  D  P  S  S  T  V  *  L  N  V  V  R  N  L  C  V  N  A  E  H  C  R  T  C  V  D  M  *  A  S  T  L  L  S  F  *  C  K  E  T  S  Y  T  C  N  T  C  I  L  Y  V  H  C  *  Q  R  D  V  V  R  M  I  H  P  L  H  </first_frame>
            <second_frame>  E  Q  L  A  N  F  *  F  K  S  G  C  W  S  *  W  Q  R  N  C  I  A  H  S  C  S  G  L  *  F  E  *  D  L   : D  G  R  R  G  K  R  W  K  F  *  A  G  A  A  R  G  A  K  E  K  S  N  P  K  P  Q  *  *  C  E  A  I  G  V  *  K  C  W  R  R  H  F  S  V  G  K  T  K  I  I  L  A  R  P  C  C  F  E  G  L  I  R  L  P  P  S  S  *  M  W  *  E  T  C  V  L  M  L  S  I  V  E  L  V  L  T  C  R  L  A  H  Y  Y  P  F  S  V  K  K  L  L  I  H  V  I  H  A  Y  Y  M  F  I  A  S  N  E  M  W  S  V  *  F  I  L  Y  I </second_frame>
            <third_frame>   S  S  S  P  T  F  D  L  N  Q  D  A  G  H  S  G  K  E  T  A  L  P  T  R  A  P  V  F  D  L  N  E  I  S  :  M  G  E  E  E  R  D  G  N  S  E  Q  V  Q  L  E  E  P  K  R  S  P  I  Q  N  L  N  D  D  V  K  L  L  V  C  R  N  V  G  E  D  T  S  R  L  G  K  Q  K  L  S  W  Q  D  P  V  A  L  R  V  *  S  V  F  H  R  L  V  K  C  G  K  K  L  V  C  *  C  *  A  L  S  N  L  C  *  H  V  G  *  H  I  I  I  L  L  V  *  R  N  F  L  Y  M  *  Y  M  H  T  I  C  S  L  L  A  T  R  C  G  P  Y  D  S  S  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73622" stop="73521"/>
                    <exon start="73425" stop="73243"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSPTFDLNQDAGHSGKETALPTRAPVFDLNEISMGEEERDGNSEQVQLEEPKRSPIQNLNDDVKLLVCRNVGEDTSRLGKQKLSWQDPVALRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="75934" PGL_stop="73983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75934" e_stop="75354"/>
            <exon e_start="74340" e_stop="74270"/>
            <exon e_start="74040" e_stop="73983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.933"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="0.873"/>
          <exon-only e_score="0.793"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="75934" e_stop="75354" e_length="581"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75353" i_stop="74341" i_length="1013"/>
          </intron>
          <exon e_serial="2" e_score="0.873">
            <gDNA_exon_boundary e_start="74340" e_stop="74270" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74269" i_stop="74041" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.793">
            <gDNA_exon_boundary e_start="74040" e_stop="73983" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75934" stop="75354"/>
              <exon start="74340" stop="74270"/>
              <exon start="74040" stop="73983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTTCATGTGTATAAGGCTAAACCCACCTCATACATACAACATATGACCATAAAGATACAATCTTTATGCCATAAATGCCCTTTCTGCAACATCCAAAAAAAAAAATTCCCAATCTTCATCACCTCTTCACTGTCTTTCCAATAACAAAAACAAGAACAATGTATAATAGTAGTATATATAGTATTTTCTTTTGTTATGGTTTTCCATTTATGTGGGCTTTTTGGGGTTTGTCTTGGTCAAGAGAACCTTCTTGCCACCTCTCTTTCTTTCTCTATAACTCCTTTTTTTTGTTTGGCCCTGTTGTTGTGTTGTTATTATTGTTTCTCCCCTCTTTACTTCTCTCTTATCTGCCTCCTTTTGCTCCTTTTCTTGGTTTCTTTCAACTTTTTTGTCTCTTTATTTCTCCAAGATCTGATCTTTTTATGTGAAAGGATTAGTTTGATTCATCTGTGATCTGATATGTCTAAGAAGATGAAAAGGGGTGCTTTGGAATCATCATCTTATGGTGTTTTTGAAGACACAAAGGATAGGTTGAAACATCAAACACTTCTGCAGGACTATCAAGAGCTCCAGAAG : GAAACTGATGCCGCAAGGCACAAGCTGGAGGATTCAAAGCTGAGGAAACTAAGATTACAAGCTGAAGTTCG : TTTCTTACGCCAGAGGCACAAGCATCTATTGCAATCGAAGTCCTTAACAACTCCAAAA</gDNA_template>
            <first_frame> F  I  F  M  C  I  R  L  N  P  P  H  T  Y  N  I  *  P  *  R  Y  N  L  Y  A  I  N  A  L  S  A  T  S  K  K  K  N  S  Q  S  S  S  P  L  H  C  L  S  N  N  K  N  K  N  N  V  *  *  *  Y  I  *  Y  F  L  L  L  W  F  S  I  Y  V  G  F  L  G  F  V  L  V  K  R  T  F  L  P  P  L  F  L  S  L  *  L  L  F  F  V  W  P  C  C  C  V  V  I  I  V  S  P  L  F  T  S  L  L  S  A  S  F  C  S  F  S  W  F  L  S  T  F  L  S  L  Y  F  S  K  I  *  S  F  Y  V  K  G  L  V  *  F  I  C  D  L  I  C  L  R  R  *  K  G  V  L  W  N  H  H  L  M  V  F  L  K  T  Q  R  I  G  *  N  I  K  H  F  C  R  T  I  K  S  S  R  R :   K  L  M  P  Q  G  T  S  W  R  I  Q  S  *  G  N  *  D  Y  K  L  K  F   : V  S  Y  A  R  G  T  S  I  Y  C  N  R  S  P  *  Q  L  Q   </first_frame>
            <second_frame>  S  F  S  C  V  *  G  *  T  H  L  I  H  T  T  Y  D  H  K  D  T  I  F  M  P  *  M  P  F  L  Q  H  P  K  K  K  I  P  N  L  H  H  L  F  T  V  F  P  I  T  K  T  R  T  M  Y  N  S  S  I  Y  S  I  F  F  C  Y  G  F  P  F  M  W  A  F  W  G  L  S  W  S  R  E  P  S  C  H  L  S  F  F  L  Y  N  S  F  F  L  F  G  P  V  V  V  L  L  L  L  F  L  P  S  L  L  L  S  Y  L  P  P  F  A  P  F  L  G  F  F  Q  L  F  C  L  F  I  S  P  R  S  D  L  F  M  *  K  D  *  F  D  S  S  V  I  *  Y  V  *  E  D  E  K  G  C  F  G  I  I  I  L  W  C  F  *  R  H  K  G  *  V  E  T  S  N  T  S  A  G  L  S  R  A  P  E   : G  N  *  C  R  K  A  Q  A  G  G  F  K  A  E  E  T  K  I  T  S  *  S  S  :  F  L  T  P  E  A  Q  A  S  I  A  I  E  V  L  N  N  S  K  </second_frame>
            <third_frame>   H  F  H  V  Y  K  A  K  P  T  S  Y  I  Q  H  M  T  I  K  I  Q  S  L  C  H  K  C  P  F  C  N  I  Q  K  K  K  F  P  I  F  I  T  S  S  L  S  F  Q  *  Q  K  Q  E  Q  C  I  I  V  V  Y  I  V  F  S  F  V  M  V  F  H  L  C  G  L  F  G  V  C  L  G  Q  E  N  L  L  A  T  S  L  S  F  S  I  T  P  F  F  C  L  A  L  L  L  C  C  Y  Y  C  F  S  P  L  Y  F  S  L  I  C  L  L  L  L  L  F  L  V  S  F  N  F  F  V  S  L  F  L  Q  D  L  I  F  L  C  E  R  I  S  L  I  H  L  *  S  D  M  S  K  K  M  K  R  G  A  L  E  S  S  S  Y  G  V  F  E  D  T  K  D  R  L  K  H  Q  T  L  L  Q  D  Y  Q  E  L  Q  K  :  E  T  D  A  A  R  H  K  L  E  D  S  K  L  R  K  L  R  L  Q  A  E  V  R :   F  L  R  Q  R  H  K  H  L  L  Q  S  K  S  L  T  T  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75855" stop="75502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPFLQHPKKKIPNLHHLFTVFPITKTRTMYNSSIYSIFFCYGFPFMWAFWGLSWSREPSCHLSFFLYNSFFLFGPVVVLLLLFLPSLLLSYLPPFAPFLGFFQLFCLFISPRSDLFM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75785" stop="75477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKQEQCIIVVYIVFSFVMVFHLCGLFGVCLGQENLLATSLSFSITPFFCLALLLCCYYCFSPLYFSLICLLLLLFLVSFNFFVSLFLQDLIFLCERISLIHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75476" stop="75354"/>
                    <exon start="74340" stop="74270"/>
                    <exon start="74040" stop="73983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDMSKKMKRGALESSSYGVFEDTKDRLKHQTLLQDYQELQKETDAARHKLEDSKLRKLRLQAEVRFLRQRHKHLLQSKSLTTPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="76747" PGL_stop="83281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76747" e_stop="76816"/>
            <exon e_start="79476" e_stop="79630"/>
            <exon e_start="80507" e_stop="80607"/>
            <exon e_start="80714" e_stop="80753"/>
            <exon e_start="81587" e_stop="81658"/>
            <exon e_start="82357" e_stop="82413"/>
            <exon e_start="83039" e_stop="83281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76747" e_stop="76816" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79476" e_stop="79630" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80507" e_stop="80607" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.981">
            <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80714" e_stop="80753" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81587" e_stop="81658" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.945">
            <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82357" e_stop="82413" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625"/>
          </intron>
          <exon e_serial="7" e_score="0.918">
            <gDNA_exon_boundary e_start="83039" e_stop="83281" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76747" stop="76816"/>
              <exon start="79476" stop="79630"/>
              <exon start="80507" stop="80607"/>
              <exon start="80714" stop="80753"/>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82413"/>
              <exon start="83039" stop="83135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76750" stop="76816"/>
              <exon start="79476" stop="79630"/>
              <exon start="80507" stop="80607"/>
              <exon start="80714" stop="80753"/>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82413"/>
              <exon start="83039" stop="83230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76752" stop="76816"/>
              <exon start="79476" stop="79630"/>
              <exon start="80507" stop="80607"/>
              <exon start="80714" stop="80753"/>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82413"/>
              <exon start="83039" stop="83179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76752" stop="76816"/>
              <exon start="79476" stop="79630"/>
              <exon start="80507" stop="80607"/>
              <exon start="80714" stop="80753"/>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76757" stop="76816"/>
              <exon start="79476" stop="79630"/>
              <exon start="80507" stop="80607"/>
              <exon start="80714" stop="80753"/>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82413"/>
              <exon start="83039" stop="83281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82413"/>
              <exon start="83039" stop="83242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA : AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAG : GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT : AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG : GTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA : AAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTG : GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATTTTTATTATTATTGTAATTTATTGGTAAGATTATGCACTGTAGAAACTTTGGATTGAAAGTTTTAAATCTTCAATTTTATAGTG</gDNA_template>
            <first_frame> *  F  C  G  E  K  M  A  S  T  S  A  F  T  A  G  I  S  N  L  H  S  F   : K  K  P  C  P  N  A  N  Q  V  G  M  W  T  L  S  R  P  G  C  R  K  V  L  D  N  P  R  P  L  Q  I  C  S  L  F  G  G  K  K  D  N  N  E  Q  N  N  D  A  P  S  K  :  A  G  L  F  G  N  M  Q  N  L  Y  E  T  V  K  K  A  Q  N  V  V  Q  V  E  A  V  R  V  Q  K  E  L  A  L :   A  E  F  D  G  Y  C  E  G  E  L  I  K  :  V  T  L  S  G  N  Q  Q  P  I  R  T  E  I  T  E  A  A  M  A  L  G  P  E  :  K  L  S  L  L  I  T  E  A  Y  K  D  A  H  Q  K  S  V  L  :  A  M  K  E  R  M  S  D  L  A  Q  S  L  G  M  P  A  G  L  G  E  G  F  K  Q  *  K  K  I  I  F  M  S  F  N  F  V  S  *  Q  T  L  S  L  F  L  H  *  N  Y  E  Y  N  F  Y  Y  Y  C  N  L  L  V  R  L  C  T  V  E  T  L  D  *  K  F  *  I  F  N  F  I  V </first_frame>
            <second_frame>  N  F  V  V  K  K  W  R  L  Q  V  L  S  Q  L  G  F  Q  I  F  I  A  S  :  K  N  R  V  L  M  Q  I  K  L  V  C  G  L  Y  Q  D  L  V  V  E  R  F  *  I  I  P  D  L  C  K  Y  V  L  C  L  E  E  K  R  T  I  M  S  R  T  T  M  L  L  Q  R :   Q  V  F  L  A  T  C  K  T  Y  T  R  Q  *  R  R  R  K  M  W  F  K  L  R  Q  C  E  Y  K  K  S  L  L   : *  Q  S  L  M  D  T  V  K  V  N  *  S  R :   *  H  C  L  E  I  S  S  R  Y  A  L  K  L  L  R  L  P  W  H  *  A  Q  K :   N  S  H  F  *  L  Q  R  H  T  R  M  R  I  R  K  V  Y  W :   Q  *  R  K  E  *  V  I  L  L  R  V  W  E  C  Q  Q  A  L  V  K  D  S  N  S  K  K  K  L  S  S  *  V  S  I  L  *  A  S  R  H  *  V  Y  F  C  I  K  I  M  N  T  I  F  I  I  I  V  I  Y  W  *  D  Y  A  L  *  K  L  W  I  E  S  F  K  S  S  I  L  *   </second_frame>
            <third_frame>   I  L  W  *  K  N  G  V  Y  K  C  F  H  S  W  D  F  K  S  S  *  L  Q :   K  T  V  S  *  C  K  S  S  W  Y  V  D  F  I  K  T  W  L  S  K  G  F  R  *  S  Q  T  S  A  N  M  F  S  V  W  R  K  K  G  Q  *  *  A  E  Q  R  C  S  F  K   : G  R  S  F  W  Q  H  A  K  L  I  R  D  S  E  E  G  A  K  C  G  S  S  *  G  S  A  S  T  K  R  A  C  F  :  S  R  V  *  W  I  L  *  R  *  T  N  Q   : G  N  T  V  W  K  S  A  A  D  T  H  *  N  Y  *  G  C  H  G  I  R  P  R   : K  T  L  T  S  D  Y  R  G  I  Q  G  C  A  S  E  K  C  T   : G  N  E  G  K  N  E  *  S  C  S  E  F  G  N  A  S  R  P  W  *  R  I  Q  T  V  K  K  N  Y  L  H  E  F  Q  F  C  K  L  A  D  T  K  F  I  F  A  L  K  L  *  I  Q  F  L  L  L  L  *  F  I  G  K  I  M  H  C  R  N  F  G  L  K  V  L  N  L  Q  F  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76750" stop="76816"/>
                    <exon start="79476" stop="79630"/>
                    <exon start="80507" stop="80607"/>
                    <exon start="80714" stop="80753"/>
                    <exon start="81587" stop="81658"/>
                    <exon start="82357" stop="82413"/>
                    <exon start="83039" stop="83116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCGEKMASTSAFTAGISNLHSFKKPCPNANQVGMWTLSRPGCRKVLDNPRPLQICSLFGGKKDNNEQNNDAPSKAGLFGNMQNLYETVKKAQNVVQVEAVRVQKELALAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMALGPEKLSLLITEAYKDAHQKSVLAMKERMSDLAQSLGMPAGLGEGFKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="86124" PGL_stop="89525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86124" e_stop="86731"/>
            <exon e_start="87054" e_stop="87138"/>
            <exon e_start="87270" e_stop="87365"/>
            <exon e_start="87800" e_stop="87952"/>
            <exon e_start="88035" e_stop="88142"/>
            <exon e_start="88243" e_stop="88362"/>
            <exon e_start="88562" e_stop="88687"/>
            <exon e_start="88768" e_stop="88851"/>
            <exon e_start="89222" e_stop="89525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="86124" e_stop="86731" e_length="608"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87054" e_stop="87138" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87270" e_stop="87365" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.936">
            <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87800" e_stop="87952" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88035" e_stop="88142" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88243" e_stop="88362" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="88562" e_stop="88687" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88768" e_stop="88851" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89222" e_stop="89525" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86124" stop="86581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86130" stop="86519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86165" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86195" stop="86689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86445" stop="86667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86463" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86466" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86533" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86622" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87952"/>
              <exon start="88035" stop="88133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87122" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87812" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87867" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87876" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87900" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576841" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87948" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88043" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88094" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88094" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88094" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88269" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575088" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88572" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88593" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282546" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88674" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89229" stop="89510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG : TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG : GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG : GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG : GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG : GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG : GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG : AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG : GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGTATATTAGTTT</gDNA_template>
            <first_frame> E  A  E  A  R  A  E  E  M  K  K  S  K  Q  V  S  K  P  V  N  H  N  L  G  K  K  Q  G  Q  V  Q  K  G  I  M  D  G  G  N  Q  K  K  S  G  A  E  S  G  N  D  S  G  D  G  D  K  V  N  S  R  A  M  E  N  G  N  G  R  S  K  V  S  K  G  N  G  V  V  Q  A  N  G  K  E  N  R  S  S  D  S  G  A  F  D  V  N  K  L  Q  K  L  R  A  K  G  G  K  K  T  D  T  I  V  K  D  S  K  A  E  P  T  K  K  A  K  K  N  R  V  W  D  D  S  P  K  E  S  K  L  D  F  T  D  P  M  C  E  N  A  N  G  N  T  A  V  V  E  A  V  Q  G  E  S  M  M  D  K  E  E  I  V  S  S  D  S  E  T  E  E  D  E  E  P  G  K  D  S  K  V  E  A  K  K  K  G  W  F  S  S  M  F  Q  S :   I  A  G  K  A  N  L  D  K  A  D  L  E  P  A  L  K  A  L  K  D  R  L  M  T  K  N  V  :  A  E  E  I  A  E  K  L  C  E  S  V  A  A  S  L  E  G  K  K  L  G  S  F  T  R  I  S  S  T  V  Q  :  A  A  M  E  E  A  L  V  R  I  L  T  P  K  R  S  I  D  I  L  R  D  V  H  A  A  K  E  Q  G  K  P  Y  V  V  V  F  V  G  V  N  G  V  G  K  S  T  N  L  A  K  :  V  A  Y  W  L  Q  Q  H  K  V  N  V  M  M  A  A  C  D  T  F  R  S  G  A  V  E  Q  L  R  T  H  A  R  R  L  Q  :  V  P  I  F  E  K  G  Y  E  K  D  P  A  I  V  A  K  E  A  I  Q  E  A  N  R  N  G  S  D  V  V  L  V  D  T  A  G  R  M  Q  :  D  N  E  P  L  M  R  A  L  S  K  L  I  Y  V  N  S  P  D  L  I  L  F  V  G  E  A  L  V  G  N  D  A  V  D  Q  L  S  K  F  N  Q  :  K  L  G  D  L  S  P  S  P  N  P  R  L  I  D  G  I  L  L  T  K  F  D  T  I  D  D  K  :  V  G  A  A  L  S  M  V  Y  I  S  G  A  P  V  M  F  V  G  C  G  Q  S  Y  T  D  L  K  K  L  N  V  K  S  I  V  K  T  L  L  K  *  E  H  T  I  C  L  Y  I  S  V  W  L  V  M  S  V  *  E  V  L  N  T  L  S  V  A  A  S  V  L  F  V  T  L  Y  S  L  I  C  D  F  I  L  F  *  F  *  R  *  I  I  *  L  N  W  C  I  L  V  </first_frame>
            <second_frame>  R  P  R  H  V  L  R  K  *  R  N  R  S  R  *  A  S  L  *  T  I  I  L  V  R  S  K  D  K  C  R  R  A  L  W  M  E  A  I  K  K  R  V  V  L  N  Q  E  M  I  V  E  M  V  I  K  *  I  V  V  P  W  K  M  A  M  G  V  L  K  L  V  R  E  M  E  *  C  R  L  T  V  K  R  T  E  V  L  I  L  G  L  L  M  *  I  S  Y  R  S  L  G  L  K  V  E  R  K  P  I  P  L  *  R  I  P  R  Q  S  L  Q  K  R  Q  R  R  T  E  S  G  M  I  H  L  R  S  R  N  W  I  S  R  I  L  C  V  R  M  Q  M  E  I  Q  Q  L  *  K  Q  F  K  V  R  V  *  W  T  K  R  R  L  *  V  V  I  V  R  L  R  R  M  K  S  Q  G  K  T  A  R  S  R  Q  R  R  K  V  G  S  H  P  C  S  R   : V  S  Q  E  R  Q  I  W  T  K  L  T  *  S  Q  L  *  K  L  L  R  T  G  *  *  P  R  M  W :   P  K  K  L  L  K  S  F  V  N  Q  W  Q  Q  V  W  R  V  K  S  L  A  H  L  Q  E  F  L  Q  Q  F  R :   Q  Q  W  R  R  P  L  F  G  S  *  L  L  N  V  P  L  I  S  *  G  M  F  M  P  Q  R  N  R  G  N  H  M  L  W  F  S  *  E  *  M  G  L  E  S  L  P  I  L  R  R :   L  L  I  G  F  S  S  T  R  S  M  L  *  W  L  R  V  T  H  F  D  L  E  L  *  S  S  S  V  L  M  L  E  D  F  R :   S  P  Y  L  R  R  A  M  R  R  I  L  L  L  L  P  R  K  Q  S  R  R  L  I  E  M  V  Q  M  S  F  L  L  I  Q  L  V  E  C  R :   I  M  N  H  *  C  E  H  F  R  S  L  Y  M  *  T  V  Q  I  *  S  F  L  L  V  R  H  L  L  E  M  T  L  L  I  S  Y  Q  S  S  T  R :   N  *  V  T  F  H  P  H  Q  I  Q  D  *  L  M  E  F  S  L  P  S  L  T  P  L  M  I  R :   W  E  Q  R  C  P  W  F  T  Y  L  E  P  R  S  C  L  W  D  V  V  S  L  T  Q  T  *  R  S  *  M  S  S  P  *  *  R  P  S  S  N  E  N  T  Q  S  A  S  T  F  Q  F  G  L  *  C  L  F  K  K  C  *  T  L  C  L  L  L  L  Q  F  C  L  *  L  C  I  H  S  S  V  I  L  Y  Y  F  D  F  E  G  E  S  F  D  L  I  G  V  Y  *  F </second_frame>
            <third_frame>   G  R  G  T  C  *  G  N  E  E  I  E  A  G  E  Q  A  C  K  P  *  S  W  *  E  A  R  T  S  A  E  G  H  Y  G  W  R  Q  S  K  K  E  W  C  *  I  R  K  *  *  W  R  W  *  *  S  K  *  S  C  H  G  K  W  Q  W  A  F  *  S  *  *  G  K  W  S  S  A  G  *  R  *  R  E  Q  K  F  *  F  W  G  F  *  C  K  *  A  T  E  A  *  G  *  R  W  K  E  N  R  Y  H  C  K  G  F  Q  G  R  A  Y  K  K  G  K  E  E  Q  S  L  G  *  F  T  *  G  V  E  I  G  F  H  G  S  Y  V  *  E  C  K  W  K  Y  S  S  C  R  S  S  S  R  *  E  Y  D  G  Q  R  G  D  C  E  *  *  *  *  D  *  G  G  *  R  A  R  E  R  Q  Q  G  R  G  K  E  E  R  L  V  L  I  H  V  P  E  :  Y  R  R  K  G  K  F  G  Q  S  *  L  R  A  S  F  K  S  S  *  G  Q  A  D  D  Q  E  C   : G  R  R  N  C  *  K  A  L  *  I  S  G  S  K  F  G  G  *  K  A  W  L  I  Y  K  N  F  F  N  S  S   : G  S  N  G  G  G  P  C  S  D  L  N  S  *  T  F  H  *  Y  L  E  G  C  S  C  R  K  G  T  G  E  T  I  C  C  G  F  R  R  S  K  W  G  W  K  V  Y  Q  S  C  E   : G  C  L  L  A  S  A  A  Q  G  Q  C  Y  D  G  C  V  *  H  I  S  I  W  S  C  R  A  A  P  Y  S  C  S  K  T  S   : G  P  H  I  *  E  G  L  *  E  G  S  C  Y  C  C  Q  G  S  N  P  G  G  *  *  K  W  F  R  C  R  S  C  *  Y  S  W  S  N  A   : G  *  *  T  T  D  A  S  T  F  E  A  Y  I  C  E  Q  S  R  S  D  P  F  C  W  *  G  T  C  W  K  *  R  C  *  S  V  I  K  V  Q  P   : E  T  R  *  P  F  T  L  T  K  S  K  I  D  *  W  N  S  P  Y  Q  V  *  H  H  *  *  *   : G  G  S  S  V  V  H  G  L  H  I  W  S  P  G  H  V  C  G  M  W  S  V  L  H  R  L  E  E  A  E  C  Q  V  H  S  E  D  P  P  Q  M  R  T  H  N  L  P  L  H  F  S  L  A  C  N  V  C  L  R  S  V  E  H  F  V  C  C  C  F  S  S  V  C  N  S  V  F  T  H  L  *  F  Y  T  I  L  I  L  K  V  N  H  L  T  *  L  V  Y  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86124" stop="86731"/>
                    <exon start="87054" stop="87138"/>
                    <exon start="87270" stop="87365"/>
                    <exon start="87800" stop="87952"/>
                    <exon start="88035" stop="88142"/>
                    <exon start="88243" stop="88362"/>
                    <exon start="88562" stop="88687"/>
                    <exon start="88768" stop="88851"/>
                    <exon start="89222" stop="89347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1503</number_coding_nucleotides>
                  <number_encoded_amino_acids>501</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAEARAEEMKKSKQVSKPVNHNLGKKQGQVQKGIMDGGNQKKSGAESGNDSGDGDKVNSRAMENGNGRSKVSKGNGVVQANGKENRSSDSGAFDVNKLQKLRAKGGKKTDTIVKDSKAEPTKKAKKNRVWDDSPKESKLDFTDPMCENANGNTAVVEAVQGESMMDKEEIVSSDSETEEDEEPGKDSKVEAKKKGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQAAMEEALVRILTPKRSIDILRDVHAAKEQGKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVNVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEANRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDLILFVGEALVGNDAVDQLSKFNQKLGDLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="93909" PGL_stop="104285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93942" e_stop="93992"/>
            <exon e_start="96549" e_stop="96667"/>
            <exon e_start="96778" e_stop="96866"/>
            <exon e_start="97290" e_stop="97874"/>
            <exon e_start="98451" e_stop="98663"/>
            <exon e_start="99538" e_stop="99842"/>
            <exon e_start="101171" e_stop="101282"/>
            <exon e_start="102499" e_stop="102735"/>
            <exon e_start="103304" e_stop="104285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.941"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-intron don_prob="0.984" acc_prob="0.990" e_score="0.933"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.950" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.990" e_score="0.977"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="93942" e_stop="93992" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93993" i_stop="96548" i_length="2556"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="96549" e_stop="96667" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96668" i_stop="96777" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.933">
            <gDNA_exon_boundary e_start="96778" e_stop="96866" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96867" i_stop="97289" i_length="423"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="97290" e_stop="97874" e_length="585"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98451" e_stop="98663" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.885">
            <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="99538" e_stop="99842" e_length="305"/>
          </exon>
          <intron i_serial="6" don_prob="0.754" acc_prob="0.990">
            <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101171" e_stop="101282" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102499" e_stop="102735" e_length="237"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="103304" e_stop="104285" e_length="982"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93942" stop="93992"/>
              <exon start="96549" stop="96667"/>
              <exon start="96778" stop="96866"/>
              <exon start="97290" stop="97473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93942" stop="93992"/>
              <exon start="96549" stop="96667"/>
              <exon start="96778" stop="96819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97290" stop="97757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97527" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97589" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98502" stop="98663"/>
              <exon start="99538" stop="99639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98557" stop="98663"/>
              <exon start="99538" stop="99842"/>
              <exon start="101171" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99691" stop="99842"/>
              <exon start="101171" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102557" stop="102735"/>
              <exon start="103304" stop="103722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103359" stop="103965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103449" stop="104285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103534" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103550" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103788" stop="104145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATT : AAATTGTTGTTGAACTAGCTCAATATATGATTCTCTTCTCGTGGTTCCATTTTGGAAAATAAAGCTTACTGACATGGACTCCTGATGGCTTTAATGCGAATAGAGAGTGATGTAAAATG : TTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAG : GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG : ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC : ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG : TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG : ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG : GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGACTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCATA</gDNA_template>
            <first_frame> C  L  F  I  S  T  I  V  H  G  L  T  S  K  T  S  I  :  K  L  L  L  N  *  L  N  I  *  F  S  S  R  G  S  I  L  E  N  K  A  Y  *  H  G  L  L  M  A  L  M  R  I  E  S  D  V  K  C :   Y  Y  I  C  V  *  L  Y  K  M  L  D  Y  G  S  K  S  Q  D  L  D  G  Q  Q  K  K  S  L  *   : G  W  M  T  L  I  A  D  *  P  Q  R  Q  H  R  S  C  K  *  M  W  L  H  H  G  S  F  K  T  F  W  P  C  N  *  Q  P  V  K  V  F  *  E  R  N  E  K  R  I  *  R  T  K  V  D  W  S  I  T  W  I  W  C  L  *  G  S  I  S  *  R  S  E  S  F  R  E  E  D  F  *  S  S  R  *  I  P  S  L  V  E  *  A  V  C  Y  I  M  H  S  G  R  V  C  *  S  V  V  F  L  P  S  S  F  R  *  Q  V  K  L  P  S  D  *  S  K  A  S  C  D  S  H  N  S  S  Y  R  C  R  C  F  L  S  Y  S  H  G  T  S  V  S  Y  S  L  Y  C  T  I  L  S  S  F  W  K  G  *  T  S  D  R  S  W  T  D  C  *  K  I  L  A  I  L  F  Y  H  R  S  S  C  C  G  S  L  A  S   : D  C  S  W  E  I  P  A  E  I  D  R  F  *  C  S  G  Y  Q  T  S  F  A  L  Y  H  F  A  P  V  Y  P  Q  I  C  P  S  Y  T  L  N  V  R  I  E  K  N  Y  W  C  L  R  *  N  C  M  G  W  C  C  I  L  F  A  V  V  H  A  C  *  S   : H  S  W  L  V  L  V  F  A  F  C  G  T  L  *  Y  M  L  G  K  S  L  *  S  *  H  N  M  P  N  *  F  L  V  L  R  Q  S  R  H  D  R  V  *  C  L  E  Q  Y  Q  *  I  G  F  K  W  S  M  P  S  *  R  *  Q  S  T  I  *  F  W  N  F  R  A  G  F  V  I  R  H  S  F  L  N  E  V  C  D  *  I  L  L  L  F  V  V  G  T  P  E  F  K  :  Y  P  W  T  G  T  S  N  *  H  I  S  W  G  V  F  I  L  Y  C  T  S  D  T  R  A  H  S  L  C  I  A  D  W  *  H  A   : D  I  P  S  V  T  Y  Y  S  T  *  R  D  E  S  *  K  A  *  L  G  T  M  D  A  S  Q  I  A  S  T  R  T  S  R  T  G  K  G  L  *  S  V  Q  V  A  R  N  T  W  S  G  *  R  K  Y  S  S  E  F  A  Q  G  S  Q  E  G  Y  Q  T  S  S  L  S  G  S  S  E  E   : G  A  S  I  C  K  Y  G  G  E  I  A  *  C  N  L  *  A  S  K  T  L  F  V  H  R  E  H  L  P  C  S  R  R  R  S  S  G  *  N  A  L  C  D  T  R  A  P  *  E  C  D  N  *  W  W  E  K  R  F  L  Q  P  Q  L  V  K  R  I  R  L  L  W  R  R  T  S  Y  L  G  T  R  P  E  I  R  F  *  P  P  I  F  Y  S  Y  R  E  S  S  D  R  G  R  G  F  C  I  N  S  R  *  V  E  I  R  R  Q  S  V  Q  K  A  P  Q  *  T  G  T  A  H  V  P  F  L  L  T  A  L  E  N  L  G  C  L  L  H  P  S  S  M  E  A  F  H  E  K  E  T  Y  G  T  T  K  K  R  G  *  R  S  R  S  V  G  R  G  Q  *  *  L  G  W  S  F  F  *  Y  W  G  N  V  L  G  I  E  I  C  S  *  C  S  P  R  R  S  *  E  S  K  S  Q  V  C  *  G  A  Y  E  A  A  K  T  S  R  T  *  F  Q  *  R  Y  *  L  N  F  V  C  L  S  F  A  K  S  L  M  Y  N  L  C  L  L  V  L  L  L  H  I  Y  V  R  V  *  L  L  *  T  D  T  D  C  V  N  K  Y  L  H  L  S  S  R  L  K  G  N  Y  G  *  L  P  V  I  S  R  R  H  L  S  F  Q  F  V  C  L  F  *  I  D  T  T  F  V  K  K  T  *  I  L  W  Y  *  T  K  N  T  L  N  V  S   </first_frame>
            <second_frame>  V  C  S  L  A  P  *  F  M  D  *  P  Q  R  L  Q  L :   N  C  C  *  T  S  S  I  Y  D  S  L  L  V  V  P  F  W  K  I  K  L  T  D  M  D  S  *  W  L  *  C  E  *  R  V  M  *  N   : V  T  I  Y  V  F  D  C  T  K  C  *  I  M  V  R  S  P  K  I  W  M  G  S  K  K  K  V  C  K  :  V  G  *  L  *  L  R  T  N  L  S  V  N  T  V  A  A  N  K  C  G  F  I  M  E  A  L  R  H  S  G  H  A  T  S  S  P  S  R  S  F  K  R  G  M  R  K  G  S  E  G  L  K  S  I  G  R  S  L  G  F  G  V  S  K  A  V  F  P  E  D  L  K  V  S  E  K  K  I  F  D  P  Q  D  K  F  L  L  L  W  N  K  L  F  V  I  S  C  I  L  A  V  S  V  D  P  L  F  F  Y  L  P  V  F  D  D  K  S  N  C  L  Q  I  D  R  K  L  A  V  I  A  T  T  L  R  T  V  V  D  A  F  Y  L  I  H  M  A  L  Q  F  R  T  A  Y  I  A  P  S  S  R  V  F  G  R  G  E  L  V  I  D  P  G  Q  I  A  K  R  Y  L  R  S  Y  F  I  I  D  L  L  A  V  V  P  L  P  Q  :  I  V  A  G  R  F  L  Q  R  S  T  G  S  D  V  L  A  T  K  Q  A  L  L  Y  I  I  L  L  Q  Y  I  P  R  F  V  R  V  I  P  L  T  S  E  L  K  R  T  T  G  V  F  A  E  T  A  W  A  G  A  A  S  Y  L  L  L  Y  M  L  A  S  H  :  I  V  G  S  F  W  Y  L  L  S  V  E  R  Y  D  T  C  W  E  R  A  C  S  H  N  T  T  C  Q  T  D  F  L  Y  C  G  N  Q  G  M  T  G  Y  N  A  W  S  N  I  S  E  S  V  L  N  G  A  C  P  R  S  G  D  N  P  P  F  D  F  G  I  F  A  Q  A  L  S  S  G  I  V  F  S  M  K  F  V  T  K  Y  C  Y  C  L  W  W  G  L  Q  N  L  S :   T  L  G  Q  G  L  Q  T  S  T  Y  P  G  E  S  L  F  S  I  A  L  A  I  L  G  L  I  L  F  A  L  L  I  G  N  M  Q  :  T  Y  L  Q  S  L  T  I  R  L  E  E  M  R  V  R  R  R  D  S  E  Q  W  M  H  H  R  L  L  P  Q  E  L  R  E  R  V  R  G  Y  D  Q  Y  K  W  Q  E  T  R  G  V  D  E  E  N  I  V  Q  N  L  P  K  D  L  R  R  D  I  K  R  H  L  C  L  A  L  V  K  R  :  V  P  L  F  A  N  M  E  E  R  L  L  D  A  I  C  E  H  L  K  P  C  L  Y  I  E  N  T  Y  L  V  R  E  G  D  P  V  D  E  M  L  F  V  I  R  G  R  L  E  S  V  T  T  D  G  G  R  S  G  F  F  N  R  S  L  L  K  E  S  D  F  C  G  E  E  L  L  T  W  A  L  D  P  K  S  G  S  N  L  P  S  S  T  R  T  V  K  A  L  T  E  V  E  A  F  A  L  I  A  D  E  L  K  F  V  A  S  Q  F  R  K  L  H  S  R  Q  V  Q  H  T  F  R  F  Y  S  Q  H  W  R  T  W  A  A  C  F  I  Q  A  A  W  R  R  F  T  K  R  K  L  M  E  L  Q  R  K  E  D  E  E  A  E  A  L  A  G  A  S  S  N  S  G  G  A  S  F  S  I  G  A  T  F  L  A  S  R  F  A  A  N  A  L  R  G  V  H  K  N  R  N  L  K  S  A  R  E  L  M  K  L  Q  K  P  P  E  P  D  F  S  E  D  T  D  *  I  L  Y  A  *  A  L  Q  K  A  *  C  I  I  Y  V  Y  *  S  Y  C  Y  I  F  M  *  E  F  N  F  F  K  L  I  L  I  V  *  I  N  I  Y  I  Y  H  L  A  *  K  V  T  M  G  S  C  P  *  *  V  E  D  T  F  R  F  N  L  F  V  C  F  K  L  I  Q  R  L  *  K  R  L  K  F  C  G  I  K  L  K  I  R  *  M  Y  H  </second_frame>
            <third_frame>   S  V  H  *  H  H  S  S  W  I  N  L  K  D  F  N   : *  I  V  V  E  L  A  Q  Y  M  I  L  F  S  W  F  H  F  G  K  *  S  L  L  T  W  T  P  D  G  F  N  A  N  R  E  *  C  K  M  :  L  L  Y  M  C  L  I  V  Q  N  V  R  L  W  F  E  V  P  R  S  G  W  A  A  K  K  K  F  V  R :   L  D  D  F  D  C  G  L  T  S  A  S  T  P  *  L  Q  I  N  V  A  S  S  W  K  L  *  D  I  L  A  M  Q  L  A  A  R  Q  G  L  L  R  E  E  *  E  K  D  L  K  D  *  S  R  L  V  D  H  L  D  L  V  S  L  R  Q  Y  F  L  K  I  *  K  F  Q  R  R  R  F  L  I  L  K  I  N  S  F  S  C  G  I  S  C  L  L  Y  H  A  F  W  P  C  L  L  I  R  C  F  S  T  F  Q  F  S  M  T  S  Q  I  A  F  R  L  I  E  S  *  L  *  *  P  Q  L  F  V  P  L  S  M  L  S  I  L  F  T  W  H  F  S  F  V  Q  L  I  L  H  H  P  L  E  F  L  E  G  V  N  *  *  *  I  L  D  R  L  L  K  D  T  C  D  P  I  L  S  S  I  F  L  L  W  F  P  C  L  R :   L  *  L  G  D  S  C  R  D  R  Q  V  L  M  F  W  L  P  N  K  L  C  S  I  S  F  C  S  S  I  S  P  D  L  S  E  L  Y  P  *  R  Q  N  *  K  E  L  L  V  S  S  L  K  L  H  G  L  V  L  H  P  I  C  C  C  T  C  L  L  V  T :   *  L  A  R  S  G  I  C  F  L  W  N  A  M  I  H  A  G  K  E  L  V  V  I  T  Q  H  A  K  L  I  S  C  T  A  A  I  K  A  *  Q  G  I  M  L  G  A  I  S  V  N  R  F  *  M  E  H  A  L  V  A  V  T  I  H  H  L  I  L  E  F  S  R  R  L  C  H  Q  A  *  F  S  Q  *  S  L  *  L  N  I  A  T  V  C  G  G  D  S  R  I  *   : V  P  L  D  R  D  F  K  L  A  H  I  L  G  S  L  Y  S  L  L  H  *  R  Y  S  G  S  F  S  L  H  C  *  L  V  T  C  R :   H  T  F  S  H  L  L  F  D  L  K  R  *  E  L  E  G  V  T  R  N  N  G  C  I  T  D  C  F  H  K  N  F  E  N  G  *  G  A  M  I  S  T  S  G  K  K  H  V  E  W  M  K  K  I  *  F  R  I  C  P  R  I  S  G  G  I  S  N  V  I  F  V  W  L  *  *  R  G :   C  L  Y  L  Q  I  W  R  R  D  C  L  M  Q  F  V  S  I  *  N  L  V  C  T  S  R  T  L  T  L  F  E  K  E  I  Q  W  M  K  C  S  L  *  Y  E  G  A  L  R  V  *  Q  L  M  V  G  E  A  V  S  S  T  A  A  C  *  K  N  P  T  S  V  E  K  N  F  L  L  G  H  *  T  R  N  Q  V  L  T  S  H  L  L  L  V  P  *  K  L  *  Q  R  *  R  L  L  H  *  *  Q  M  S  *  N  S  S  P  V  S  S  E  S  S  T  V  D  R  Y  S  T  R  S  V  S  T  H  S  T  G  E  L  G  L  L  A  S  S  K  Q  H  G  G  V  S  R  K  G  N  L  W  N  Y  K  E  K  R  M  K  K  Q  K  R  W  P  G  P  V  V  T  R  V  E  L  L  L  V  L  G  Q  R  S  W  H  R  D  L  Q  L  M  L  S  E  A  F  I  R  I  E  I  S  S  L  L  G  S  L  *  S  C  K  N  L  Q  N  L  I  S  V  K  I  L  T  E  F  C  M  L  K  L  C  K  K  L  D  V  *  F  M  F  I  S  L  I  A  T  Y  L  C  K  S  L  T  S  L  N  *  Y  *  L  C  K  *  I  F  T  F  I  I  S  P  K  R  *  L  W  V  A  A  R  D  K  *  K  T  P  F  V  S  I  C  L  S  V  L  N  *  Y  N  V  C  K  K  D  L  N  F  V  V  L  N  *  K  Y  V  K  C  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97305" stop="97874"/>
                    <exon start="98451" stop="98663"/>
                    <exon start="99538" stop="99842"/>
                    <exon start="101171" stop="101282"/>
                    <exon start="102499" stop="102735"/>
                    <exon start="103304" stop="103999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2130</number_coding_nucleotides>
                  <number_encoded_amino_acids>710</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTNLSVNTVAANKCGFIMEALRHSGHATSSPSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVFDDKSNCLQIDRKLAVIATTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPGQIAKRYLRSYFIIDLLAVVPLPQIVAGRFLQRSTGSDVLATKQALLYIILLQYIPRFVRVIPLTSELKRTTGVFAETAWAGAASYLLLYMLASHIVGSFWYLLSVERYDTCWERACSHNTTCQTDFLYCGNQGMTGYNAWSNISESVLNGACPRSGDNPPFDFGIFAQALSSGIVFSMKFVTKYCYCLWWGLQNLSTLGQGLQTSTYPGESLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVRRRDSEQWMHHRLLPQELRERVRGYDQYKWQETRGVDEENIVQNLPKDLRRDIKRHLCLALVKRVPLFANMEERLLDAICEHLKPCLYIENTYLVREGDPVDEMLFVIRGRLESVTTDGGRSGFFNRSLLKESDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRKLHSRQVQHTFRFYSQHWRTWAACFIQAAWRRFTKRKLMELQRKEDEEAEALAGASSNSGGASFSIGATFLASRFAANALRGVHKNRNLKSARELMKLQKPPEPDFSEDTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97289" e_stop="97874"/>
            <exon e_start="98451" e_stop="98663"/>
            <exon e_start="99538" e_stop="99842"/>
            <exon e_start="101171" e_stop="101282"/>
            <exon e_start="102499" e_stop="102735"/>
            <exon e_start="103304" e_stop="104285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.950" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.990" e_score="0.977"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="97289" e_stop="97874" e_length="586"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98451" e_stop="98663" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.885">
            <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="99538" e_stop="99842" e_length="305"/>
          </exon>
          <intron i_serial="3" don_prob="0.754" acc_prob="0.990">
            <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101171" e_stop="101282" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102499" e_stop="102735" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="103304" e_stop="104285" e_length="982"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97289" stop="97874"/>
              <exon start="98451" stop="98532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97290" stop="97757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97527" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97589" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98502" stop="98663"/>
              <exon start="99538" stop="99639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98557" stop="98663"/>
              <exon start="99538" stop="99842"/>
              <exon start="101171" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99691" stop="99842"/>
              <exon start="101171" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102557" stop="102735"/>
              <exon start="103304" stop="103722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103359" stop="103965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103449" stop="104285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103534" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103550" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103788" stop="104145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG : ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC : ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG : TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG : ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG : GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGACTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCATA</gDNA_template>
            <first_frame> G  W  M  T  L  I  A  D  *  P  Q  R  Q  H  R  S  C  K  *  M  W  L  H  H  G  S  F  K  T  F  W  P  C  N  *  Q  P  V  K  V  F  *  E  R  N  E  K  R  I  *  R  T  K  V  D  W  S  I  T  W  I  W  C  L  *  G  S  I  S  *  R  S  E  S  F  R  E  E  D  F  *  S  S  R  *  I  P  S  L  V  E  *  A  V  C  Y  I  M  H  S  G  R  V  C  *  S  V  V  F  L  P  S  S  F  R  *  Q  V  K  L  P  S  D  *  S  K  A  S  C  D  S  H  N  S  S  Y  R  C  R  C  F  L  S  Y  S  H  G  T  S  V  S  Y  S  L  Y  C  T  I  L  S  S  F  W  K  G  *  T  S  D  R  S  W  T  D  C  *  K  I  L  A  I  L  F  Y  H  R  S  S  C  C  G  S  L  A  S   : D  C  S  W  E  I  P  A  E  I  D  R  F  *  C  S  G  Y  Q  T  S  F  A  L  Y  H  F  A  P  V  Y  P  Q  I  C  P  S  Y  T  L  N  V  R  I  E  K  N  Y  W  C  L  R  *  N  C  M  G  W  C  C  I  L  F  A  V  V  H  A  C  *  S   : H  S  W  L  V  L  V  F  A  F  C  G  T  L  *  Y  M  L  G  K  S  L  *  S  *  H  N  M  P  N  *  F  L  V  L  R  Q  S  R  H  D  R  V  *  C  L  E  Q  Y  Q  *  I  G  F  K  W  S  M  P  S  *  R  *  Q  S  T  I  *  F  W  N  F  R  A  G  F  V  I  R  H  S  F  L  N  E  V  C  D  *  I  L  L  L  F  V  V  G  T  P  E  F  K  :  Y  P  W  T  G  T  S  N  *  H  I  S  W  G  V  F  I  L  Y  C  T  S  D  T  R  A  H  S  L  C  I  A  D  W  *  H  A   : D  I  P  S  V  T  Y  Y  S  T  *  R  D  E  S  *  K  A  *  L  G  T  M  D  A  S  Q  I  A  S  T  R  T  S  R  T  G  K  G  L  *  S  V  Q  V  A  R  N  T  W  S  G  *  R  K  Y  S  S  E  F  A  Q  G  S  Q  E  G  Y  Q  T  S  S  L  S  G  S  S  E  E   : G  A  S  I  C  K  Y  G  G  E  I  A  *  C  N  L  *  A  S  K  T  L  F  V  H  R  E  H  L  P  C  S  R  R  R  S  S  G  *  N  A  L  C  D  T  R  A  P  *  E  C  D  N  *  W  W  E  K  R  F  L  Q  P  Q  L  V  K  R  I  R  L  L  W  R  R  T  S  Y  L  G  T  R  P  E  I  R  F  *  P  P  I  F  Y  S  Y  R  E  S  S  D  R  G  R  G  F  C  I  N  S  R  *  V  E  I  R  R  Q  S  V  Q  K  A  P  Q  *  T  G  T  A  H  V  P  F  L  L  T  A  L  E  N  L  G  C  L  L  H  P  S  S  M  E  A  F  H  E  K  E  T  Y  G  T  T  K  K  R  G  *  R  S  R  S  V  G  R  G  Q  *  *  L  G  W  S  F  F  *  Y  W  G  N  V  L  G  I  E  I  C  S  *  C  S  P  R  R  S  *  E  S  K  S  Q  V  C  *  G  A  Y  E  A  A  K  T  S  R  T  *  F  Q  *  R  Y  *  L  N  F  V  C  L  S  F  A  K  S  L  M  Y  N  L  C  L  L  V  L  L  L  H  I  Y  V  R  V  *  L  L  *  T  D  T  D  C  V  N  K  Y  L  H  L  S  S  R  L  K  G  N  Y  G  *  L  P  V  I  S  R  R  H  L  S  F  Q  F  V  C  L  F  *  I  D  T  T  F  V  K  K  T  *  I  L  W  Y  *  T  K  N  T  L  N  V  S   </first_frame>
            <second_frame>  V  G  *  L  *  L  R  T  N  L  S  V  N  T  V  A  A  N  K  C  G  F  I  M  E  A  L  R  H  S  G  H  A  T  S  S  P  S  R  S  F  K  R  G  M  R  K  G  S  E  G  L  K  S  I  G  R  S  L  G  F  G  V  S  K  A  V  F  P  E  D  L  K  V  S  E  K  K  I  F  D  P  Q  D  K  F  L  L  L  W  N  K  L  F  V  I  S  C  I  L  A  V  S  V  D  P  L  F  F  Y  L  P  V  F  D  D  K  S  N  C  L  Q  I  D  R  K  L  A  V  I  A  T  T  L  R  T  V  V  D  A  F  Y  L  I  H  M  A  L  Q  F  R  T  A  Y  I  A  P  S  S  R  V  F  G  R  G  E  L  V  I  D  P  G  Q  I  A  K  R  Y  L  R  S  Y  F  I  I  D  L  L  A  V  V  P  L  P  Q  :  I  V  A  G  R  F  L  Q  R  S  T  G  S  D  V  L  A  T  K  Q  A  L  L  Y  I  I  L  L  Q  Y  I  P  R  F  V  R  V  I  P  L  T  S  E  L  K  R  T  T  G  V  F  A  E  T  A  W  A  G  A  A  S  Y  L  L  L  Y  M  L  A  S  H  :  I  V  G  S  F  W  Y  L  L  S  V  E  R  Y  D  T  C  W  E  R  A  C  S  H  N  T  T  C  Q  T  D  F  L  Y  C  G  N  Q  G  M  T  G  Y  N  A  W  S  N  I  S  E  S  V  L  N  G  A  C  P  R  S  G  D  N  P  P  F  D  F  G  I  F  A  Q  A  L  S  S  G  I  V  F  S  M  K  F  V  T  K  Y  C  Y  C  L  W  W  G  L  Q  N  L  S :   T  L  G  Q  G  L  Q  T  S  T  Y  P  G  E  S  L  F  S  I  A  L  A  I  L  G  L  I  L  F  A  L  L  I  G  N  M  Q  :  T  Y  L  Q  S  L  T  I  R  L  E  E  M  R  V  R  R  R  D  S  E  Q  W  M  H  H  R  L  L  P  Q  E  L  R  E  R  V  R  G  Y  D  Q  Y  K  W  Q  E  T  R  G  V  D  E  E  N  I  V  Q  N  L  P  K  D  L  R  R  D  I  K  R  H  L  C  L  A  L  V  K  R  :  V  P  L  F  A  N  M  E  E  R  L  L  D  A  I  C  E  H  L  K  P  C  L  Y  I  E  N  T  Y  L  V  R  E  G  D  P  V  D  E  M  L  F  V  I  R  G  R  L  E  S  V  T  T  D  G  G  R  S  G  F  F  N  R  S  L  L  K  E  S  D  F  C  G  E  E  L  L  T  W  A  L  D  P  K  S  G  S  N  L  P  S  S  T  R  T  V  K  A  L  T  E  V  E  A  F  A  L  I  A  D  E  L  K  F  V  A  S  Q  F  R  K  L  H  S  R  Q  V  Q  H  T  F  R  F  Y  S  Q  H  W  R  T  W  A  A  C  F  I  Q  A  A  W  R  R  F  T  K  R  K  L  M  E  L  Q  R  K  E  D  E  E  A  E  A  L  A  G  A  S  S  N  S  G  G  A  S  F  S  I  G  A  T  F  L  A  S  R  F  A  A  N  A  L  R  G  V  H  K  N  R  N  L  K  S  A  R  E  L  M  K  L  Q  K  P  P  E  P  D  F  S  E  D  T  D  *  I  L  Y  A  *  A  L  Q  K  A  *  C  I  I  Y  V  Y  *  S  Y  C  Y  I  F  M  *  E  F  N  F  F  K  L  I  L  I  V  *  I  N  I  Y  I  Y  H  L  A  *  K  V  T  M  G  S  C  P  *  *  V  E  D  T  F  R  F  N  L  F  V  C  F  K  L  I  Q  R  L  *  K  R  L  K  F  C  G  I  K  L  K  I  R  *  M  Y  H  </second_frame>
            <third_frame>   L  D  D  F  D  C  G  L  T  S  A  S  T  P  *  L  Q  I  N  V  A  S  S  W  K  L  *  D  I  L  A  M  Q  L  A  A  R  Q  G  L  L  R  E  E  *  E  K  D  L  K  D  *  S  R  L  V  D  H  L  D  L  V  S  L  R  Q  Y  F  L  K  I  *  K  F  Q  R  R  R  F  L  I  L  K  I  N  S  F  S  C  G  I  S  C  L  L  Y  H  A  F  W  P  C  L  L  I  R  C  F  S  T  F  Q  F  S  M  T  S  Q  I  A  F  R  L  I  E  S  *  L  *  *  P  Q  L  F  V  P  L  S  M  L  S  I  L  F  T  W  H  F  S  F  V  Q  L  I  L  H  H  P  L  E  F  L  E  G  V  N  *  *  *  I  L  D  R  L  L  K  D  T  C  D  P  I  L  S  S  I  F  L  L  W  F  P  C  L  R :   L  *  L  G  D  S  C  R  D  R  Q  V  L  M  F  W  L  P  N  K  L  C  S  I  S  F  C  S  S  I  S  P  D  L  S  E  L  Y  P  *  R  Q  N  *  K  E  L  L  V  S  S  L  K  L  H  G  L  V  L  H  P  I  C  C  C  T  C  L  L  V  T :   *  L  A  R  S  G  I  C  F  L  W  N  A  M  I  H  A  G  K  E  L  V  V  I  T  Q  H  A  K  L  I  S  C  T  A  A  I  K  A  *  Q  G  I  M  L  G  A  I  S  V  N  R  F  *  M  E  H  A  L  V  A  V  T  I  H  H  L  I  L  E  F  S  R  R  L  C  H  Q  A  *  F  S  Q  *  S  L  *  L  N  I  A  T  V  C  G  G  D  S  R  I  *   : V  P  L  D  R  D  F  K  L  A  H  I  L  G  S  L  Y  S  L  L  H  *  R  Y  S  G  S  F  S  L  H  C  *  L  V  T  C  R :   H  T  F  S  H  L  L  F  D  L  K  R  *  E  L  E  G  V  T  R  N  N  G  C  I  T  D  C  F  H  K  N  F  E  N  G  *  G  A  M  I  S  T  S  G  K  K  H  V  E  W  M  K  K  I  *  F  R  I  C  P  R  I  S  G  G  I  S  N  V  I  F  V  W  L  *  *  R  G :   C  L  Y  L  Q  I  W  R  R  D  C  L  M  Q  F  V  S  I  *  N  L  V  C  T  S  R  T  L  T  L  F  E  K  E  I  Q  W  M  K  C  S  L  *  Y  E  G  A  L  R  V  *  Q  L  M  V  G  E  A  V  S  S  T  A  A  C  *  K  N  P  T  S  V  E  K  N  F  L  L  G  H  *  T  R  N  Q  V  L  T  S  H  L  L  L  V  P  *  K  L  *  Q  R  *  R  L  L  H  *  *  Q  M  S  *  N  S  S  P  V  S  S  E  S  S  T  V  D  R  Y  S  T  R  S  V  S  T  H  S  T  G  E  L  G  L  L  A  S  S  K  Q  H  G  G  V  S  R  K  G  N  L  W  N  Y  K  E  K  R  M  K  K  Q  K  R  W  P  G  P  V  V  T  R  V  E  L  L  L  V  L  G  Q  R  S  W  H  R  D  L  Q  L  M  L  S  E  A  F  I  R  I  E  I  S  S  L  L  G  S  L  *  S  C  K  N  L  Q  N  L  I  S  V  K  I  L  T  E  F  C  M  L  K  L  C  K  K  L  D  V  *  F  M  F  I  S  L  I  A  T  Y  L  C  K  S  L  T  S  L  N  *  Y  *  L  C  K  *  I  F  T  F  I  I  S  P  K  R  *  L  W  V  A  A  R  D  K  *  K  T  P  F  V  S  I  C  L  S  V  L  N  *  Y  N  V  C  K  K  D  L  N  F  V  V  L  N  *  K  Y  V  K  C  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97305" stop="97874"/>
                    <exon start="98451" stop="98663"/>
                    <exon start="99538" stop="99842"/>
                    <exon start="101171" stop="101282"/>
                    <exon start="102499" stop="102735"/>
                    <exon start="103304" stop="103999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2130</number_coding_nucleotides>
                  <number_encoded_amino_acids>710</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTNLSVNTVAANKCGFIMEALRHSGHATSSPSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVFDDKSNCLQIDRKLAVIATTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPGQIAKRYLRSYFIIDLLAVVPLPQIVAGRFLQRSTGSDVLATKQALLYIILLQYIPRFVRVIPLTSELKRTTGVFAETAWAGAASYLLLYMLASHIVGSFWYLLSVERYDTCWERACSHNTTCQTDFLYCGNQGMTGYNAWSNISESVLNGACPRSGDNPPFDFGIFAQALSSGIVFSMKFVTKYCYCLWWGLQNLSTLGQGLQTSTYPGESLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVRRRDSEQWMHHRLLPQELRERVRGYDQYKWQETRGVDEENIVQNLPKDLRRDIKRHLCLALVKRVPLFANMEERLLDAICEHLKPCLYIENTYLVREGDPVDEMLFVIRGRLESVTTDGGRSGFFNRSLLKESDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRKLHSRQVQHTFRFYSQHWRTWAACFIQAAWRRFTKRKLMELQRKEDEEAEALAGASSNSGGASFSIGATFLASRFAANALRGVHKNRNLKSARELMKLQKPPEPDFSEDTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93912" e_stop="93992"/>
            <exon e_start="97290" e_stop="97874"/>
            <exon e_start="98451" e_stop="98663"/>
            <exon e_start="99538" e_stop="99842"/>
            <exon e_start="101171" e_stop="101282"/>
            <exon e_start="102499" e_stop="102735"/>
            <exon e_start="103304" e_stop="104285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.950" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.990" e_score="0.977"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="93912" e_stop="93992" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93993" i_stop="97289" i_length="3297"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="97290" e_stop="97874" e_length="585"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98451" e_stop="98663" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.885">
            <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="99538" e_stop="99842" e_length="305"/>
          </exon>
          <intron i_serial="4" don_prob="0.754" acc_prob="0.990">
            <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101171" e_stop="101282" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102499" e_stop="102735" e_length="237"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="103304" e_stop="104285" e_length="982"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93912" stop="93992"/>
              <exon start="97290" stop="97587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97290" stop="97757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97527" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97589" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98502" stop="98663"/>
              <exon start="99538" stop="99639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98557" stop="98663"/>
              <exon start="99538" stop="99842"/>
              <exon start="101171" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99691" stop="99842"/>
              <exon start="101171" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102557" stop="102735"/>
              <exon start="103304" stop="103722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103359" stop="103965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103449" stop="104285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103534" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103550" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103788" stop="104145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCCACCCCCAACTTCCTTCTTCCCCTCTTGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATT : GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG : ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC : ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG : TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG : ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG : GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGACTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCATA</gDNA_template>
            <first_frame> P  P  P  P  T  S  F  F  P  S  C  L  F  I  S  T  I  V  H  G  L  T  S  K  T  S  I  :  V  G  *  L  *  L  R  T  N  L  S  V  N  T  V  A  A  N  K  C  G  F  I  M  E  A  L  R  H  S  G  H  A  T  S  S  P  S  R  S  F  K  R  G  M  R  K  G  S  E  G  L  K  S  I  G  R  S  L  G  F  G  V  S  K  A  V  F  P  E  D  L  K  V  S  E  K  K  I  F  D  P  Q  D  K  F  L  L  L  W  N  K  L  F  V  I  S  C  I  L  A  V  S  V  D  P  L  F  F  Y  L  P  V  F  D  D  K  S  N  C  L  Q  I  D  R  K  L  A  V  I  A  T  T  L  R  T  V  V  D  A  F  Y  L  I  H  M  A  L  Q  F  R  T  A  Y  I  A  P  S  S  R  V  F  G  R  G  E  L  V  I  D  P  G  Q  I  A  K  R  Y  L  R  S  Y  F  I  I  D  L  L  A  V  V  P  L  P  Q  :  I  V  A  G  R  F  L  Q  R  S  T  G  S  D  V  L  A  T  K  Q  A  L  L  Y  I  I  L  L  Q  Y  I  P  R  F  V  R  V  I  P  L  T  S  E  L  K  R  T  T  G  V  F  A  E  T  A  W  A  G  A  A  S  Y  L  L  L  Y  M  L  A  S  H  :  I  V  G  S  F  W  Y  L  L  S  V  E  R  Y  D  T  C  W  E  R  A  C  S  H  N  T  T  C  Q  T  D  F  L  Y  C  G  N  Q  G  M  T  G  Y  N  A  W  S  N  I  S  E  S  V  L  N  G  A  C  P  R  S  G  D  N  P  P  F  D  F  G  I  F  A  Q  A  L  S  S  G  I  V  F  S  M  K  F  V  T  K  Y  C  Y  C  L  W  W  G  L  Q  N  L  S :   T  L  G  Q  G  L  Q  T  S  T  Y  P  G  E  S  L  F  S  I  A  L  A  I  L  G  L  I  L  F  A  L  L  I  G  N  M  Q  :  T  Y  L  Q  S  L  T  I  R  L  E  E  M  R  V  R  R  R  D  S  E  Q  W  M  H  H  R  L  L  P  Q  E  L  R  E  R  V  R  G  Y  D  Q  Y  K  W  Q  E  T  R  G  V  D  E  E  N  I  V  Q  N  L  P  K  D  L  R  R  D  I  K  R  H  L  C  L  A  L  V  K  R  :  V  P  L  F  A  N  M  E  E  R  L  L  D  A  I  C  E  H  L  K  P  C  L  Y  I  E  N  T  Y  L  V  R  E  G  D  P  V  D  E  M  L  F  V  I  R  G  R  L  E  S  V  T  T  D  G  G  R  S  G  F  F  N  R  S  L  L  K  E  S  D  F  C  G  E  E  L  L  T  W  A  L  D  P  K  S  G  S  N  L  P  S  S  T  R  T  V  K  A  L  T  E  V  E  A  F  A  L  I  A  D  E  L  K  F  V  A  S  Q  F  R  K  L  H  S  R  Q  V  Q  H  T  F  R  F  Y  S  Q  H  W  R  T  W  A  A  C  F  I  Q  A  A  W  R  R  F  T  K  R  K  L  M  E  L  Q  R  K  E  D  E  E  A  E  A  L  A  G  A  S  S  N  S  G  G  A  S  F  S  I  G  A  T  F  L  A  S  R  F  A  A  N  A  L  R  G  V  H  K  N  R  N  L  K  S  A  R  E  L  M  K  L  Q  K  P  P  E  P  D  F  S  E  D  T  D  *  I  L  Y  A  *  A  L  Q  K  A  *  C  I  I  Y  V  Y  *  S  Y  C  Y  I  F  M  *  E  F  N  F  F  K  L  I  L  I  V  *  I  N  I  Y  I  Y  H  L  A  *  K  V  T  M  G  S  C  P  *  *  V  E  D  T  F  R  F  N  L  F  V  C  F  K  L  I  Q  R  L  *  K  R  L  K  F  C  G  I  K  L  K  I  R  *  M  Y  H  </first_frame>
            <second_frame>  P  H  P  Q  L  P  S  S  P  L  V  C  S  L  A  P  *  F  M  D  *  P  Q  R  L  Q  L :   L  D  D  F  D  C  G  L  T  S  A  S  T  P  *  L  Q  I  N  V  A  S  S  W  K  L  *  D  I  L  A  M  Q  L  A  A  R  Q  G  L  L  R  E  E  *  E  K  D  L  K  D  *  S  R  L  V  D  H  L  D  L  V  S  L  R  Q  Y  F  L  K  I  *  K  F  Q  R  R  R  F  L  I  L  K  I  N  S  F  S  C  G  I  S  C  L  L  Y  H  A  F  W  P  C  L  L  I  R  C  F  S  T  F  Q  F  S  M  T  S  Q  I  A  F  R  L  I  E  S  *  L  *  *  P  Q  L  F  V  P  L  S  M  L  S  I  L  F  T  W  H  F  S  F  V  Q  L  I  L  H  H  P  L  E  F  L  E  G  V  N  *  *  *  I  L  D  R  L  L  K  D  T  C  D  P  I  L  S  S  I  F  L  L  W  F  P  C  L  R :   L  *  L  G  D  S  C  R  D  R  Q  V  L  M  F  W  L  P  N  K  L  C  S  I  S  F  C  S  S  I  S  P  D  L  S  E  L  Y  P  *  R  Q  N  *  K  E  L  L  V  S  S  L  K  L  H  G  L  V  L  H  P  I  C  C  C  T  C  L  L  V  T :   *  L  A  R  S  G  I  C  F  L  W  N  A  M  I  H  A  G  K  E  L  V  V  I  T  Q  H  A  K  L  I  S  C  T  A  A  I  K  A  *  Q  G  I  M  L  G  A  I  S  V  N  R  F  *  M  E  H  A  L  V  A  V  T  I  H  H  L  I  L  E  F  S  R  R  L  C  H  Q  A  *  F  S  Q  *  S  L  *  L  N  I  A  T  V  C  G  G  D  S  R  I  *   : V  P  L  D  R  D  F  K  L  A  H  I  L  G  S  L  Y  S  L  L  H  *  R  Y  S  G  S  F  S  L  H  C  *  L  V  T  C  R :   H  T  F  S  H  L  L  F  D  L  K  R  *  E  L  E  G  V  T  R  N  N  G  C  I  T  D  C  F  H  K  N  F  E  N  G  *  G  A  M  I  S  T  S  G  K  K  H  V  E  W  M  K  K  I  *  F  R  I  C  P  R  I  S  G  G  I  S  N  V  I  F  V  W  L  *  *  R  G :   C  L  Y  L  Q  I  W  R  R  D  C  L  M  Q  F  V  S  I  *  N  L  V  C  T  S  R  T  L  T  L  F  E  K  E  I  Q  W  M  K  C  S  L  *  Y  E  G  A  L  R  V  *  Q  L  M  V  G  E  A  V  S  S  T  A  A  C  *  K  N  P  T  S  V  E  K  N  F  L  L  G  H  *  T  R  N  Q  V  L  T  S  H  L  L  L  V  P  *  K  L  *  Q  R  *  R  L  L  H  *  *  Q  M  S  *  N  S  S  P  V  S  S  E  S  S  T  V  D  R  Y  S  T  R  S  V  S  T  H  S  T  G  E  L  G  L  L  A  S  S  K  Q  H  G  G  V  S  R  K  G  N  L  W  N  Y  K  E  K  R  M  K  K  Q  K  R  W  P  G  P  V  V  T  R  V  E  L  L  L  V  L  G  Q  R  S  W  H  R  D  L  Q  L  M  L  S  E  A  F  I  R  I  E  I  S  S  L  L  G  S  L  *  S  C  K  N  L  Q  N  L  I  S  V  K  I  L  T  E  F  C  M  L  K  L  C  K  K  L  D  V  *  F  M  F  I  S  L  I  A  T  Y  L  C  K  S  L  T  S  L  N  *  Y  *  L  C  K  *  I  F  T  F  I  I  S  P  K  R  *  L  W  V  A  A  R  D  K  *  K  T  P  F  V  S  I  C  L  S  V  L  N  *  Y  N  V  C  K  K  D  L  N  F  V  V  L  N  *  K  Y  V  K  C  I  I </second_frame>
            <third_frame>   P  T  P  N  F  L  L  P  L  L  S  V  H  *  H  H  S  S  W  I  N  L  K  D  F  N   : C  W  M  T  L  I  A  D  *  P  Q  R  Q  H  R  S  C  K  *  M  W  L  H  H  G  S  F  K  T  F  W  P  C  N  *  Q  P  V  K  V  F  *  E  R  N  E  K  R  I  *  R  T  K  V  D  W  S  I  T  W  I  W  C  L  *  G  S  I  S  *  R  S  E  S  F  R  E  E  D  F  *  S  S  R  *  I  P  S  L  V  E  *  A  V  C  Y  I  M  H  S  G  R  V  C  *  S  V  V  F  L  P  S  S  F  R  *  Q  V  K  L  P  S  D  *  S  K  A  S  C  D  S  H  N  S  S  Y  R  C  R  C  F  L  S  Y  S  H  G  T  S  V  S  Y  S  L  Y  C  T  I  L  S  S  F  W  K  G  *  T  S  D  R  S  W  T  D  C  *  K  I  L  A  I  L  F  Y  H  R  S  S  C  C  G  S  L  A  S   : D  C  S  W  E  I  P  A  E  I  D  R  F  *  C  S  G  Y  Q  T  S  F  A  L  Y  H  F  A  P  V  Y  P  Q  I  C  P  S  Y  T  L  N  V  R  I  E  K  N  Y  W  C  L  R  *  N  C  M  G  W  C  C  I  L  F  A  V  V  H  A  C  *  S   : H  S  W  L  V  L  V  F  A  F  C  G  T  L  *  Y  M  L  G  K  S  L  *  S  *  H  N  M  P  N  *  F  L  V  L  R  Q  S  R  H  D  R  V  *  C  L  E  Q  Y  Q  *  I  G  F  K  W  S  M  P  S  *  R  *  Q  S  T  I  *  F  W  N  F  R  A  G  F  V  I  R  H  S  F  L  N  E  V  C  D  *  I  L  L  L  F  V  V  G  T  P  E  F  K  :  Y  P  W  T  G  T  S  N  *  H  I  S  W  G  V  F  I  L  Y  C  T  S  D  T  R  A  H  S  L  C  I  A  D  W  *  H  A   : D  I  P  S  V  T  Y  Y  S  T  *  R  D  E  S  *  K  A  *  L  G  T  M  D  A  S  Q  I  A  S  T  R  T  S  R  T  G  K  G  L  *  S  V  Q  V  A  R  N  T  W  S  G  *  R  K  Y  S  S  E  F  A  Q  G  S  Q  E  G  Y  Q  T  S  S  L  S  G  S  S  E  E   : G  A  S  I  C  K  Y  G  G  E  I  A  *  C  N  L  *  A  S  K  T  L  F  V  H  R  E  H  L  P  C  S  R  R  R  S  S  G  *  N  A  L  C  D  T  R  A  P  *  E  C  D  N  *  W  W  E  K  R  F  L  Q  P  Q  L  V  K  R  I  R  L  L  W  R  R  T  S  Y  L  G  T  R  P  E  I  R  F  *  P  P  I  F  Y  S  Y  R  E  S  S  D  R  G  R  G  F  C  I  N  S  R  *  V  E  I  R  R  Q  S  V  Q  K  A  P  Q  *  T  G  T  A  H  V  P  F  L  L  T  A  L  E  N  L  G  C  L  L  H  P  S  S  M  E  A  F  H  E  K  E  T  Y  G  T  T  K  K  R  G  *  R  S  R  S  V  G  R  G  Q  *  *  L  G  W  S  F  F  *  Y  W  G  N  V  L  G  I  E  I  C  S  *  C  S  P  R  R  S  *  E  S  K  S  Q  V  C  *  G  A  Y  E  A  A  K  T  S  R  T  *  F  Q  *  R  Y  *  L  N  F  V  C  L  S  F  A  K  S  L  M  Y  N  L  C  L  L  V  L  L  L  H  I  Y  V  R  V  *  L  L  *  T  D  T  D  C  V  N  K  Y  L  H  L  S  S  R  L  K  G  N  Y  G  *  L  P  V  I  S  R  R  H  L  S  F  Q  F  V  C  L  F  *  I  D  T  T  F  V  K  K  T  *  I  L  W  Y  *  T  K  N  T  L  N  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97305" stop="97874"/>
                    <exon start="98451" stop="98663"/>
                    <exon start="99538" stop="99842"/>
                    <exon start="101171" stop="101282"/>
                    <exon start="102499" stop="102735"/>
                    <exon start="103304" stop="103999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2130</number_coding_nucleotides>
                  <number_encoded_amino_acids>710</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTNLSVNTVAANKCGFIMEALRHSGHATSSPSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVFDDKSNCLQIDRKLAVIATTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPGQIAKRYLRSYFIIDLLAVVPLPQIVAGRFLQRSTGSDVLATKQALLYIILLQYIPRFVRVIPLTSELKRTTGVFAETAWAGAASYLLLYMLASHIVGSFWYLLSVERYDTCWERACSHNTTCQTDFLYCGNQGMTGYNAWSNISESVLNGACPRSGDNPPFDFGIFAQALSSGIVFSMKFVTKYCYCLWWGLQNLSTLGQGLQTSTYPGESLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVRRRDSEQWMHHRLLPQELRERVRGYDQYKWQETRGVDEENIVQNLPKDLRRDIKRHLCLALVKRVPLFANMEERLLDAICEHLKPCLYIENTYLVREGDPVDEMLFVIRGRLESVTTDGGRSGFFNRSLLKESDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRKLHSRQVQHTFRFYSQHWRTWAACFIQAAWRRFTKRKLMELQRKEDEEAEALAGASSNSGGASFSIGATFLASRFAANALRGVHKNRNLKSARELMKLQKPPEPDFSEDTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93909" e_stop="93992"/>
            <exon e_start="96778" e_stop="96866"/>
            <exon e_start="97290" e_stop="97874"/>
            <exon e_start="98451" e_stop="98663"/>
            <exon e_start="99538" e_stop="99842"/>
            <exon e_start="101171" e_stop="101282"/>
            <exon e_start="102499" e_stop="102735"/>
            <exon e_start="103304" e_stop="104285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.950" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.990" e_score="0.977"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93909" e_stop="93992" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93993" i_stop="96777" i_length="2785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96778" e_stop="96866" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.990">
            <gDNA_intron_boundary i_start="96867" i_stop="97289" i_length="423"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="97290" e_stop="97874" e_length="585"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98451" e_stop="98663" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.885">
            <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="99538" e_stop="99842" e_length="305"/>
          </exon>
          <intron i_serial="5" don_prob="0.754" acc_prob="0.990">
            <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101171" e_stop="101282" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102499" e_stop="102735" e_length="237"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="103304" e_stop="104285" e_length="982"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93909" stop="93992"/>
              <exon start="96778" stop="96866"/>
              <exon start="97290" stop="97533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97290" stop="97757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97527" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97589" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98502" stop="98663"/>
              <exon start="99538" stop="99639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98557" stop="98663"/>
              <exon start="99538" stop="99842"/>
              <exon start="101171" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99691" stop="99842"/>
              <exon start="101171" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101216" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="103545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102557" stop="102735"/>
              <exon start="103304" stop="103722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103359" stop="103965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103449" stop="104285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103534" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103550" stop="104195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103788" stop="104145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCCCCACCCCCAACTTCCTTCTTCCCCTCTTGTCTGTTCATTAGCACCATAGTTCATGGATTAACCTCAAAGACTTCAATT : TTACTATATATGTGTTTGATTGTACAAAATGTTAGATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAG : GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG : ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC : ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG : TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG : ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG : GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGACTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCATA</gDNA_template>
            <first_frame> P  P  P  P  P  T  S  F  F  P  S  C  L  F  I  S  T  I  V  H  G  L  T  S  K  T  S  I  :  L  L  Y  M  C  L  I  V  Q  N  V  R  L  W  F  E  V  P  R  S  G  W  A  A  K  K  K  F  V  R :   L  D  D  F  D  C  G  L  T  S  A  S  T  P  *  L  Q  I  N  V  A  S  S  W  K  L  *  D  I  L  A  M  Q  L  A  A  R  Q  G  L  L  R  E  E  *  E  K  D  L  K  D  *  S  R  L  V  D  H  L  D  L  V  S  L  R  Q  Y  F  L  K  I  *  K  F  Q  R  R  R  F  L  I  L  K  I  N  S  F  S  C  G  I  S  C  L  L  Y  H  A  F  W  P  C  L  L  I  R  C  F  S  T  F  Q  F  S  M  T  S  Q  I  A  F  R  L  I  E  S  *  L  *  *  P  Q  L  F  V  P  L  S  M  L  S  I  L  F  T  W  H  F  S  F  V  Q  L  I  L  H  H  P  L  E  F  L  E  G  V  N  *  *  *  I  L  D  R  L  L  K  D  T  C  D  P  I  L  S  S  I  F  L  L  W  F  P  C  L  R :   L  *  L  G  D  S  C  R  D  R  Q  V  L  M  F  W  L  P  N  K  L  C  S  I  S  F  C  S  S  I  S  P  D  L  S  E  L  Y  P  *  R  Q  N  *  K  E  L  L  V  S  S  L  K  L  H  G  L  V  L  H  P  I  C  C  C  T  C  L  L  V  T :   *  L  A  R  S  G  I  C  F  L  W  N  A  M  I  H  A  G  K  E  L  V  V  I  T  Q  H  A  K  L  I  S  C  T  A  A  I  K  A  *  Q  G  I  M  L  G  A  I  S  V  N  R  F  *  M  E  H  A  L  V  A  V  T  I  H  H  L  I  L  E  F  S  R  R  L  C  H  Q  A  *  F  S  Q  *  S  L  *  L  N  I  A  T  V  C  G  G  D  S  R  I  *   : V  P  L  D  R  D  F  K  L  A  H  I  L  G  S  L  Y  S  L  L  H  *  R  Y  S  G  S  F  S  L  H  C  *  L  V  T  C  R :   H  T  F  S  H  L  L  F  D  L  K  R  *  E  L  E  G  V  T  R  N  N  G  C  I  T  D  C  F  H  K  N  F  E  N  G  *  G  A  M  I  S  T  S  G  K  K  H  V  E  W  M  K  K  I  *  F  R  I  C  P  R  I  S  G  G  I  S  N  V  I  F  V  W  L  *  *  R  G :   C  L  Y  L  Q  I  W  R  R  D  C  L  M  Q  F  V  S  I  *  N  L  V  C  T  S  R  T  L  T  L  F  E  K  E  I  Q  W  M  K  C  S  L  *  Y  E  G  A  L  R  V  *  Q  L  M  V  G  E  A  V  S  S  T  A  A  C  *  K  N  P  T  S  V  E  K  N  F  L  L  G  H  *  T  R  N  Q  V  L  T  S  H  L  L  L  V  P  *  K  L  *  Q  R  *  R  L  L  H  *  *  Q  M  S  *  N  S  S  P  V  S  S  E  S  S  T  V  D  R  Y  S  T  R  S  V  S  T  H  S  T  G  E  L  G  L  L  A  S  S  K  Q  H  G  G  V  S  R  K  G  N  L  W  N  Y  K  E  K  R  M  K  K  Q  K  R  W  P  G  P  V  V  T  R  V  E  L  L  L  V  L  G  Q  R  S  W  H  R  D  L  Q  L  M  L  S  E  A  F  I  R  I  E  I  S  S  L  L  G  S  L  *  S  C  K  N  L  Q  N  L  I  S  V  K  I  L  T  E  F  C  M  L  K  L  C  K  K  L  D  V  *  F  M  F  I  S  L  I  A  T  Y  L  C  K  S  L  T  S  L  N  *  Y  *  L  C  K  *  I  F  T  F  I  I  S  P  K  R  *  L  W  V  A  A  R  D  K  *  K  T  P  F  V  S  I  C  L  S  V  L  N  *  Y  N  V  C  K  K  D  L  N  F  V  V  L  N  *  K  Y  V  K  C  I  I </first_frame>
            <second_frame>  H  P  H  P  Q  L  P  S  S  P  L  V  C  S  L  A  P  *  F  M  D  *  P  Q  R  L  Q  F :   Y  Y  I  C  V  *  L  Y  K  M  L  D  Y  G  S  K  S  Q  D  L  D  G  Q  Q  K  K  S  L  *   : G  W  M  T  L  I  A  D  *  P  Q  R  Q  H  R  S  C  K  *  M  W  L  H  H  G  S  F  K  T  F  W  P  C  N  *  Q  P  V  K  V  F  *  E  R  N  E  K  R  I  *  R  T  K  V  D  W  S  I  T  W  I  W  C  L  *  G  S  I  S  *  R  S  E  S  F  R  E  E  D  F  *  S  S  R  *  I  P  S  L  V  E  *  A  V  C  Y  I  M  H  S  G  R  V  C  *  S  V  V  F  L  P  S  S  F  R  *  Q  V  K  L  P  S  D  *  S  K  A  S  C  D  S  H  N  S  S  Y  R  C  R  C  F  L  S  Y  S  H  G  T  S  V  S  Y  S  L  Y  C  T  I  L  S  S  F  W  K  G  *  T  S  D  R  S  W  T  D  C  *  K  I  L  A  I  L  F  Y  H  R  S  S  C  C  G  S  L  A  S   : D  C  S  W  E  I  P  A  E  I  D  R  F  *  C  S  G  Y  Q  T  S  F  A  L  Y  H  F  A  P  V  Y  P  Q  I  C  P  S  Y  T  L  N  V  R  I  E  K  N  Y  W  C  L  R  *  N  C  M  G  W  C  C  I  L  F  A  V  V  H  A  C  *  S   : H  S  W  L  V  L  V  F  A  F  C  G  T  L  *  Y  M  L  G  K  S  L  *  S  *  H  N  M  P  N  *  F  L  V  L  R  Q  S  R  H  D  R  V  *  C  L  E  Q  Y  Q  *  I  G  F  K  W  S  M  P  S  *  R  *  Q  S  T  I  *  F  W  N  F  R  A  G  F  V  I  R  H  S  F  L  N  E  V  C  D  *  I  L  L  L  F  V  V  G  T  P  E  F  K  :  Y  P  W  T  G  T  S  N  *  H  I  S  W  G  V  F  I  L  Y  C  T  S  D  T  R  A  H  S  L  C  I  A  D  W  *  H  A   : D  I  P  S  V  T  Y  Y  S  T  *  R  D  E  S  *  K  A  *  L  G  T  M  D  A  S  Q  I  A  S  T  R  T  S  R  T  G  K  G  L  *  S  V  Q  V  A  R  N  T  W  S  G  *  R  K  Y  S  S  E  F  A  Q  G  S  Q  E  G  Y  Q  T  S  S  L  S  G  S  S  E  E   : G  A  S  I  C  K  Y  G  G  E  I  A  *  C  N  L  *  A  S  K  T  L  F  V  H  R  E  H  L  P  C  S  R  R  R  S  S  G  *  N  A  L  C  D  T  R  A  P  *  E  C  D  N  *  W  W  E  K  R  F  L  Q  P  Q  L  V  K  R  I  R  L  L  W  R  R  T  S  Y  L  G  T  R  P  E  I  R  F  *  P  P  I  F  Y  S  Y  R  E  S  S  D  R  G  R  G  F  C  I  N  S  R  *  V  E  I  R  R  Q  S  V  Q  K  A  P  Q  *  T  G  T  A  H  V  P  F  L  L  T  A  L  E  N  L  G  C  L  L  H  P  S  S  M  E  A  F  H  E  K  E  T  Y  G  T  T  K  K  R  G  *  R  S  R  S  V  G  R  G  Q  *  *  L  G  W  S  F  F  *  Y  W  G  N  V  L  G  I  E  I  C  S  *  C  S  P  R  R  S  *  E  S  K  S  Q  V  C  *  G  A  Y  E  A  A  K  T  S  R  T  *  F  Q  *  R  Y  *  L  N  F  V  C  L  S  F  A  K  S  L  M  Y  N  L  C  L  L  V  L  L  L  H  I  Y  V  R  V  *  L  L  *  T  D  T  D  C  V  N  K  Y  L  H  L  S  S  R  L  K  G  N  Y  G  *  L  P  V  I  S  R  R  H  L  S  F  Q  F  V  C  L  F  *  I  D  T  T  F  V  K  K  T  *  I  L  W  Y  *  T  K  N  T  L  N  V  S   </second_frame>
            <third_frame>   T  P  T  P  N  F  L  L  P  L  L  S  V  H  *  H  H  S  S  W  I  N  L  K  D  F  N   : F  T  I  Y  V  F  D  C  T  K  C  *  I  M  V  R  S  P  K  I  W  M  G  S  K  K  K  V  C  K  :  V  G  *  L  *  L  R  T  N  L  S  V  N  T  V  A  A  N  K  C  G  F  I  M  E  A  L  R  H  S  G  H  A  T  S  S  P  S  R  S  F  K  R  G  M  R  K  G  S  E  G  L  K  S  I  G  R  S  L  G  F  G  V  S  K  A  V  F  P  E  D  L  K  V  S  E  K  K  I  F  D  P  Q  D  K  F  L  L  L  W  N  K  L  F  V  I  S  C  I  L  A  V  S  V  D  P  L  F  F  Y  L  P  V  F  D  D  K  S  N  C  L  Q  I  D  R  K  L  A  V  I  A  T  T  L  R  T  V  V  D  A  F  Y  L  I  H  M  A  L  Q  F  R  T  A  Y  I  A  P  S  S  R  V  F  G  R  G  E  L  V  I  D  P  G  Q  I  A  K  R  Y  L  R  S  Y  F  I  I  D  L  L  A  V  V  P  L  P  Q  :  I  V  A  G  R  F  L  Q  R  S  T  G  S  D  V  L  A  T  K  Q  A  L  L  Y  I  I  L  L  Q  Y  I  P  R  F  V  R  V  I  P  L  T  S  E  L  K  R  T  T  G  V  F  A  E  T  A  W  A  G  A  A  S  Y  L  L  L  Y  M  L  A  S  H  :  I  V  G  S  F  W  Y  L  L  S  V  E  R  Y  D  T  C  W  E  R  A  C  S  H  N  T  T  C  Q  T  D  F  L  Y  C  G  N  Q  G  M  T  G  Y  N  A  W  S  N  I  S  E  S  V  L  N  G  A  C  P  R  S  G  D  N  P  P  F  D  F  G  I  F  A  Q  A  L  S  S  G  I  V  F  S  M  K  F  V  T  K  Y  C  Y  C  L  W  W  G  L  Q  N  L  S :   T  L  G  Q  G  L  Q  T  S  T  Y  P  G  E  S  L  F  S  I  A  L  A  I  L  G  L  I  L  F  A  L  L  I  G  N  M  Q  :  T  Y  L  Q  S  L  T  I  R  L  E  E  M  R  V  R  R  R  D  S  E  Q  W  M  H  H  R  L  L  P  Q  E  L  R  E  R  V  R  G  Y  D  Q  Y  K  W  Q  E  T  R  G  V  D  E  E  N  I  V  Q  N  L  P  K  D  L  R  R  D  I  K  R  H  L  C  L  A  L  V  K  R  :  V  P  L  F  A  N  M  E  E  R  L  L  D  A  I  C  E  H  L  K  P  C  L  Y  I  E  N  T  Y  L  V  R  E  G  D  P  V  D  E  M  L  F  V  I  R  G  R  L  E  S  V  T  T  D  G  G  R  S  G  F  F  N  R  S  L  L  K  E  S  D  F  C  G  E  E  L  L  T  W  A  L  D  P  K  S  G  S  N  L  P  S  S  T  R  T  V  K  A  L  T  E  V  E  A  F  A  L  I  A  D  E  L  K  F  V  A  S  Q  F  R  K  L  H  S  R  Q  V  Q  H  T  F  R  F  Y  S  Q  H  W  R  T  W  A  A  C  F  I  Q  A  A  W  R  R  F  T  K  R  K  L  M  E  L  Q  R  K  E  D  E  E  A  E  A  L  A  G  A  S  S  N  S  G  G  A  S  F  S  I  G  A  T  F  L  A  S  R  F  A  A  N  A  L  R  G  V  H  K  N  R  N  L  K  S  A  R  E  L  M  K  L  Q  K  P  P  E  P  D  F  S  E  D  T  D  *  I  L  Y  A  *  A  L  Q  K  A  *  C  I  I  Y  V  Y  *  S  Y  C  Y  I  F  M  *  E  F  N  F  F  K  L  I  L  I  V  *  I  N  I  Y  I  Y  H  L  A  *  K  V  T  M  G  S  C  P  *  *  V  E  D  T  F  R  F  N  L  F  V  C  F  K  L  I  Q  R  L  *  K  R  L  K  F  C  G  I  K  L  K  I  R  *  M  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97305" stop="97874"/>
                    <exon start="98451" stop="98663"/>
                    <exon start="99538" stop="99842"/>
                    <exon start="101171" stop="101282"/>
                    <exon start="102499" stop="102735"/>
                    <exon start="103304" stop="103999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2130</number_coding_nucleotides>
                  <number_encoded_amino_acids>710</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTNLSVNTVAANKCGFIMEALRHSGHATSSPSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVFDDKSNCLQIDRKLAVIATTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPGQIAKRYLRSYFIIDLLAVVPLPQIVAGRFLQRSTGSDVLATKQALLYIILLQYIPRFVRVIPLTSELKRTTGVFAETAWAGAASYLLLYMLASHIVGSFWYLLSVERYDTCWERACSHNTTCQTDFLYCGNQGMTGYNAWSNISESVLNGACPRSGDNPPFDFGIFAQALSSGIVFSMKFVTKYCYCLWWGLQNLSTLGQGLQTSTYPGESLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVRRRDSEQWMHHRLLPQELRERVRGYDQYKWQETRGVDEENIVQNLPKDLRRDIKRHLCLALVKRVPLFANMEERLLDAICEHLKPCLYIENTYLVREGDPVDEMLFVIRGRLESVTTDGGRSGFFNRSLLKESDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRKLHSRQVQHTFRFYSQHWRTWAACFIQAAWRRFTKRKLMELQRKEDEEAEALAGASSNSGGASFSIGATFLASRFAANALRGVHKNRNLKSARELMKLQKPPEPDFSEDTD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93909" stop="93992"/>
                    <exon start="96778" stop="96866"/>
                    <exon start="97290" stop="97335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPPPPTSFFPSCLFISTIVHGLTSKTSILLYMCLIVQNVRLWFEVPRSGWAAKKKFVRLDDFDCGLTSASTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 305 chains have been computed
$ 
$ memory statistics:
$ 717288 bytes spliced alignments in total
$ 163 spliced alignments have been stored
$ 4400 bytes was the average size of a spliced alignment
$ 31112 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1830 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 361 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:19:57
-->
