<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:20:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8409" ref_strand="+" ref_description="SGN-M8409 C2_At4g30600 [cosii_markers]">
      <seq>gaggccgaggcacgtgctgaggaaatgaagaaatcgaagcaggtgagcaagcctgtaaaccataatcttggtaagaagcaaggacaagtgcagaagggcattatggatggaggcaatcaaaaaaagagtggtgctgaatcaggaaatgatagtggagatggtgataaagtaaatagtcgtgccatggaaaatggcaatgggcgttctaaagttagtaagggaaatggagtagtgcaggctaacgggaaagagaacagaagttctgattctggggcttttgatgtaaataagctacagaagcttagggctaaaggtggaaagaaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtagaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgagactgaggaggatgaagagccagggaaagacagcaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagccccggtcatgtttgtgggatgtggtcagtcttacacagacttgaagaagctgaatgtcaagtccatagtgaagaccctcctcaaatgagaacacacaatctgcctctacatttcagtttggcttgtaatgtctgtttaagaagtgttgaacactttgtctgttgctgcttcagttctgtttgtaactctgtattcactcatctgtgattttatactattttgattttgaaggtgaatcatttgacttaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85824" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86124" g_stop="86731" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="693" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="789" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87800" g_stop="87952" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="942" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="943" r_stop="1050" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1051" r_stop="1170" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1171" r_stop="1296" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1297" r_stop="1380" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89222" g_stop="89507" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1381" r_stop="1666" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1667" polyA_stop="1684"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-M8409" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1666</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86124" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTA</genome_strand>
        <mrna_strand>GAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGGAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8409-2" ref_strand="+" ref_description="SGN-M8409-2 C2_At4g30600-2 [cosii_markers]">
      <seq>ggtgagcaagcctgtaaaccataatcttggtaagaagcaaggacaagtgcagaagggcattatggatggaggcaatcaaaaaaagagtggtgccgaatcaggaaatgacagtggagatggtgataaagtaaatagtcgtgccatggaaaatggcaatgggcgttctaaaggtagtaaggaaaatggagtagtgcaggctaacggtaaagagaatagaagctctgattctggggcttttgatgtaaataagctacagaagcttagggctaaaggtggaaagaaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtggaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgaaactgaggaggatgaggagccagggaaagacaacaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggctgcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtcaaccaatcttgctaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgcgacacatttcgatccggagctgtagagcagctccgtactcatgctcggagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatcgaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgtcggaaatgatgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatccggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaacgtcaagtccatagtgaagacactcctcaaatgagaacacacaatctctgtctctacattttagcttggcttttaatgtctgtttaagtagtgttgaacactttgtatgttgctgcttcagttctgtttgtaactttgtattctctcatctgtgatttctcactattttgattttgaaggtgaatcatttgacttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85865" stop="89808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86165" g_stop="86731" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="652" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="748" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87800" g_stop="87952" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="901" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1009" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1129" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1255" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1256" r_stop="1339" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89222" g_stop="89513" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1340" r_stop="1633" r_length="294" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-M8409-2" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>1631</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8409-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86165" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAA--TCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGT</genome_strand>
        <mrna_strand>GGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCCGAATCAGGAAATGACAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGGTAGTAAGGAAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAATAGAAGCTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTGGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAAACTGAGGAGGATGAGGAGCCAGGGAAAGACAACAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCTGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCAACCAATCTTGCTAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGCGACACATTTCGATCCGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGGAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATCGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTCCATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGTAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATTTGACTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2338" ref_strand="+" ref_description="SGN-M2338 T1879 [cos_markers]">
      <seq>gaggcccttgttcggattttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="87512" stop="89115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87812" g_stop="87952" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="249" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="495" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88768" g_stop="88815" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="543" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-M2338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87812" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGA</genome_strand>
        <mrna_strand>GAGGCCCTTGTTCGGATTTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="86124" PGL_stop="89513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86124" e_stop="86731"/>
            <exon e_start="87054" e_stop="87138"/>
            <exon e_start="87270" e_stop="87365"/>
            <exon e_start="87800" e_stop="87952"/>
            <exon e_start="88035" e_stop="88142"/>
            <exon e_start="88243" e_stop="88362"/>
            <exon e_start="88562" e_stop="88687"/>
            <exon e_start="88768" e_stop="88851"/>
            <exon e_start="89222" e_stop="89513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="86124" e_stop="86731" e_length="608"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87054" e_stop="87138" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87270" e_stop="87365" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.936">
            <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87800" e_stop="87952" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88035" e_stop="88142" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88243" e_stop="88362" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="88562" e_stop="88687" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88768" e_stop="88851" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89222" e_stop="89513" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86124" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86165" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8409-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87812" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG : TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG : GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG : GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG : GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG : GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG : GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG : AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG : GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGT</gDNA_template>
            <first_frame> E  A  E  A  R  A  E  E  M  K  K  S  K  Q  V  S  K  P  V  N  H  N  L  G  K  K  Q  G  Q  V  Q  K  G  I  M  D  G  G  N  Q  K  K  S  G  A  E  S  G  N  D  S  G  D  G  D  K  V  N  S  R  A  M  E  N  G  N  G  R  S  K  V  S  K  G  N  G  V  V  Q  A  N  G  K  E  N  R  S  S  D  S  G  A  F  D  V  N  K  L  Q  K  L  R  A  K  G  G  K  K  T  D  T  I  V  K  D  S  K  A  E  P  T  K  K  A  K  K  N  R  V  W  D  D  S  P  K  E  S  K  L  D  F  T  D  P  M  C  E  N  A  N  G  N  T  A  V  V  E  A  V  Q  G  E  S  M  M  D  K  E  E  I  V  S  S  D  S  E  T  E  E  D  E  E  P  G  K  D  S  K  V  E  A  K  K  K  G  W  F  S  S  M  F  Q  S :   I  A  G  K  A  N  L  D  K  A  D  L  E  P  A  L  K  A  L  K  D  R  L  M  T  K  N  V  :  A  E  E  I  A  E  K  L  C  E  S  V  A  A  S  L  E  G  K  K  L  G  S  F  T  R  I  S  S  T  V  Q  :  A  A  M  E  E  A  L  V  R  I  L  T  P  K  R  S  I  D  I  L  R  D  V  H  A  A  K  E  Q  G  K  P  Y  V  V  V  F  V  G  V  N  G  V  G  K  S  T  N  L  A  K  :  V  A  Y  W  L  Q  Q  H  K  V  N  V  M  M  A  A  C  D  T  F  R  S  G  A  V  E  Q  L  R  T  H  A  R  R  L  Q  :  V  P  I  F  E  K  G  Y  E  K  D  P  A  I  V  A  K  E  A  I  Q  E  A  N  R  N  G  S  D  V  V  L  V  D  T  A  G  R  M  Q  :  D  N  E  P  L  M  R  A  L  S  K  L  I  Y  V  N  S  P  D  L  I  L  F  V  G  E  A  L  V  G  N  D  A  V  D  Q  L  S  K  F  N  Q  :  K  L  G  D  L  S  P  S  P  N  P  R  L  I  D  G  I  L  L  T  K  F  D  T  I  D  D  K  :  V  G  A  A  L  S  M  V  Y  I  S  G  A  P  V  M  F  V  G  C  G  Q  S  Y  T  D  L  K  K  L  N  V  K  S  I  V  K  T  L  L  K  *  E  H  T  I  C  L  Y  I  S  V  W  L  V  M  S  V  *  E  V  L  N  T  L  S  V  A  A  S  V  L  F  V  T  L  Y  S  L  I  C  D  F  I  L  F  *  F  *  R  *  I  I  *  L  N  W  </first_frame>
            <second_frame>  R  P  R  H  V  L  R  K  *  R  N  R  S  R  *  A  S  L  *  T  I  I  L  V  R  S  K  D  K  C  R  R  A  L  W  M  E  A  I  K  K  R  V  V  L  N  Q  E  M  I  V  E  M  V  I  K  *  I  V  V  P  W  K  M  A  M  G  V  L  K  L  V  R  E  M  E  *  C  R  L  T  V  K  R  T  E  V  L  I  L  G  L  L  M  *  I  S  Y  R  S  L  G  L  K  V  E  R  K  P  I  P  L  *  R  I  P  R  Q  S  L  Q  K  R  Q  R  R  T  E  S  G  M  I  H  L  R  S  R  N  W  I  S  R  I  L  C  V  R  M  Q  M  E  I  Q  Q  L  *  K  Q  F  K  V  R  V  *  W  T  K  R  R  L  *  V  V  I  V  R  L  R  R  M  K  S  Q  G  K  T  A  R  S  R  Q  R  R  K  V  G  S  H  P  C  S  R   : V  S  Q  E  R  Q  I  W  T  K  L  T  *  S  Q  L  *  K  L  L  R  T  G  *  *  P  R  M  W :   P  K  K  L  L  K  S  F  V  N  Q  W  Q  Q  V  W  R  V  K  S  L  A  H  L  Q  E  F  L  Q  Q  F  R :   Q  Q  W  R  R  P  L  F  G  S  *  L  L  N  V  P  L  I  S  *  G  M  F  M  P  Q  R  N  R  G  N  H  M  L  W  F  S  *  E  *  M  G  L  E  S  L  P  I  L  R  R :   L  L  I  G  F  S  S  T  R  S  M  L  *  W  L  R  V  T  H  F  D  L  E  L  *  S  S  S  V  L  M  L  E  D  F  R :   S  P  Y  L  R  R  A  M  R  R  I  L  L  L  L  P  R  K  Q  S  R  R  L  I  E  M  V  Q  M  S  F  L  L  I  Q  L  V  E  C  R :   I  M  N  H  *  C  E  H  F  R  S  L  Y  M  *  T  V  Q  I  *  S  F  L  L  V  R  H  L  L  E  M  T  L  L  I  S  Y  Q  S  S  T  R :   N  *  V  T  F  H  P  H  Q  I  Q  D  *  L  M  E  F  S  L  P  S  L  T  P  L  M  I  R :   W  E  Q  R  C  P  W  F  T  Y  L  E  P  R  S  C  L  W  D  V  V  S  L  T  Q  T  *  R  S  *  M  S  S  P  *  *  R  P  S  S  N  E  N  T  Q  S  A  S  T  F  Q  F  G  L  *  C  L  F  K  K  C  *  T  L  C  L  L  L  L  Q  F  C  L  *  L  C  I  H  S  S  V  I  L  Y  Y  F  D  F  E  G  E  S  F  D  L  I  G </second_frame>
            <third_frame>   G  R  G  T  C  *  G  N  E  E  I  E  A  G  E  Q  A  C  K  P  *  S  W  *  E  A  R  T  S  A  E  G  H  Y  G  W  R  Q  S  K  K  E  W  C  *  I  R  K  *  *  W  R  W  *  *  S  K  *  S  C  H  G  K  W  Q  W  A  F  *  S  *  *  G  K  W  S  S  A  G  *  R  *  R  E  Q  K  F  *  F  W  G  F  *  C  K  *  A  T  E  A  *  G  *  R  W  K  E  N  R  Y  H  C  K  G  F  Q  G  R  A  Y  K  K  G  K  E  E  Q  S  L  G  *  F  T  *  G  V  E  I  G  F  H  G  S  Y  V  *  E  C  K  W  K  Y  S  S  C  R  S  S  S  R  *  E  Y  D  G  Q  R  G  D  C  E  *  *  *  *  D  *  G  G  *  R  A  R  E  R  Q  Q  G  R  G  K  E  E  R  L  V  L  I  H  V  P  E  :  Y  R  R  K  G  K  F  G  Q  S  *  L  R  A  S  F  K  S  S  *  G  Q  A  D  D  Q  E  C   : G  R  R  N  C  *  K  A  L  *  I  S  G  S  K  F  G  G  *  K  A  W  L  I  Y  K  N  F  F  N  S  S   : G  S  N  G  G  G  P  C  S  D  L  N  S  *  T  F  H  *  Y  L  E  G  C  S  C  R  K  G  T  G  E  T  I  C  C  G  F  R  R  S  K  W  G  W  K  V  Y  Q  S  C  E   : G  C  L  L  A  S  A  A  Q  G  Q  C  Y  D  G  C  V  *  H  I  S  I  W  S  C  R  A  A  P  Y  S  C  S  K  T  S   : G  P  H  I  *  E  G  L  *  E  G  S  C  Y  C  C  Q  G  S  N  P  G  G  *  *  K  W  F  R  C  R  S  C  *  Y  S  W  S  N  A   : G  *  *  T  T  D  A  S  T  F  E  A  Y  I  C  E  Q  S  R  S  D  P  F  C  W  *  G  T  C  W  K  *  R  C  *  S  V  I  K  V  Q  P   : E  T  R  *  P  F  T  L  T  K  S  K  I  D  *  W  N  S  P  Y  Q  V  *  H  H  *  *  *   : G  G  S  S  V  V  H  G  L  H  I  W  S  P  G  H  V  C  G  M  W  S  V  L  H  R  L  E  E  A  E  C  Q  V  H  S  E  D  P  P  Q  M  R  T  H  N  L  P  L  H  F  S  L  A  C  N  V  C  L  R  S  V  E  H  F  V  C  C  C  F  S  S  V  C  N  S  V  F  T  H  L  *  F  Y  T  I  L  I  L  K  V  N  H  L  T  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86124" stop="86731"/>
                    <exon start="87054" stop="87138"/>
                    <exon start="87270" stop="87365"/>
                    <exon start="87800" stop="87952"/>
                    <exon start="88035" stop="88142"/>
                    <exon start="88243" stop="88362"/>
                    <exon start="88562" stop="88687"/>
                    <exon start="88768" stop="88851"/>
                    <exon start="89222" stop="89347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1503</number_coding_nucleotides>
                  <number_encoded_amino_acids>501</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAEARAEEMKKSKQVSKPVNHNLGKKQGQVQKGIMDGGNQKKSGAESGNDSGDGDKVNSRAMENGNGRSKVSKGNGVVQANGKENRSSDSGAFDVNKLQKLRAKGGKKTDTIVKDSKAEPTKKAKKNRVWDDSPKESKLDFTDPMCENANGNTAVVEAVQGESMMDKEEIVSSDSETEEDEEPGKDSKVEAKKKGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQAAMEEALVRILTPKRSIDILRDVHAAKEQGKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVNVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEANRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDLILFVGEALVGNDAVDQLSKFNQKLGDLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 6584 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2194 bytes was the average size of a spliced alignment
$ 5784 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5784 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:20:36
-->
