<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:10:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687863" ref_strand="+" ref_description="SGN-E687863 [T3_tus_81_F24]">
      <seq>tagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatggcgtctcaagtgctcgatgcggattcaatttcatcgttgaaatcagatctgaaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgaacggaatccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="1042" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="743" g_stop="8" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E687863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="743" e_stop="8"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTG-AAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTG-ACGGAATCCATGGA</genome_strand>
        <mrna_strand>TAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGAACGGAATCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327237" ref_strand="+" ref_description="SGN-E327237 [cTOC-19-M7]">
      <seq>agagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="1042" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="742" g_stop="176" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E327237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="742" e_stop="176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</genome_strand>
        <mrna_strand>AGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294754" ref_strand="+" ref_description="SGN-E294754 [cLET-17-O11]">
      <seq>aaaaatggctgacagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="1055" stop="195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="755" g_stop="495" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E294754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="755" e_stop="495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCAT</genome_strand>
        <mrna_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294755" ref_strand="+" ref_description="SGN-E294755 [cLET-17-O11](-)">
      <seq>atgaagaggagtgaccagaaacaacagaagcagaagcaccggcggcaggtgcaacggcggcgattgtgtcggtggtaggcagttggagttggtcggtaagggatgcgattcgggttgtacatttggttcttcgccgccggaggaggaaattgcggcggcttcgcggcggctttgggattgacggccgccgcagcggcaccggtaatattggcagcgttgccatttggcttagctgaagggtgaactctgtcagccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="195" stop="1055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="495" g_stop="755" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E294755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="495" e_stop="755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</genome_strand>
        <mrna_strand>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718338" ref_strand="+" ref_description="SGN-E718338 [FC04BE06]">
      <seq>gggcgaattggcggccaatcggccgaattctctttacaccacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaaaaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8563" stop="11026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8863" g_stop="9266" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="429" r_length="403" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="698" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="791" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10726" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="838" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E718338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8863" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCA</genome_strand>
        <mrna_strand>ATTCTCTTTACA-CCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAAAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721822" ref_strand="+" ref_description="SGN-E721822 [FC15BF05]">
      <seq>aatcggccgaattgctctttacaaccacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8563" stop="11192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8866" g_stop="9266" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="415" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="684" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="777" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="849" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10872" g_stop="10892" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="870" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E721822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8866" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCT</genome_strand>
        <mrna_strand>CTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702670" ref_strand="+" ref_description="SGN-E702670 [FA19BE03]">
      <seq>cacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaagtgatccctttgcacttgcctcctggtgacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8577" stop="11206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8877" g_stop="9266" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="659" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="752" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="824" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10872" g_stop="10906" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="859" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E702670" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8877" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATC</genome_strand>
        <mrna_strand>CACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAA........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709631" ref_strand="+" ref_description="SGN-E709631 [FA52CE11]">
      <seq>acttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccacaccaaattgctaaggctgaacagttgattaatgacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8578" stop="10657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8878" g_stop="9266" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10357" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="649" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E709631" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8878" e_stop="9266"/>
          <exon e_start="10098" e_stop="10357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTT</genome_strand>
        <mrna_strand>ACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCACACCAAATTGCTAAGGCTGAACAGTTGATTAATGACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557237" ref_strand="+" ref_description="SGN-E557237 [20971]">
      <seq>ctcactagggtttcgaaaaccctaccgccgctgcactcctttttctcccaaatctgagcaaatcgaaagcaacaatggcggaagaagcacagtacggagcaccagaagccggtaacaacaagaggaagtacgatgatcaaacgacaccgtctcctggtccacgtagacctactggattttctgctccgatcgcttccttatctccttctgatggtgctgctcctccttcttcttacaacaatgttccgccgcccatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccaatctggagccaaaattcaggttactagagacatggatgctgatcctaattctacaaatagagcagttgaactcatgcgtactccaaccaaatactaaggctgaacagttgattactgaggttcttctgaggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8584" stop="10667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8884" g_stop="9266" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="656" r_length="266" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10505" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="662" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E557237" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8884" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTAC-CCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGAT</genome_strand>
        <mrna_strand>CTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCACTCCTTTTTCTCCCAAATCTGAGCAAATCGAAAGCAACAATGGCGGAAGAAGCACAGTACGGAGCACCAGAAGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGACACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTCCTTCTGATGGTGCTGCTCCTCCTTCTTCTTACAACAATGTTCCGCCGCCCATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAATCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGCGTACTCCA-ACCAAA-TACTAAGGCTGAACAGTTGATTACTGAGGTTC-TTCTGAG.....................................................................................................................................GCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342292" ref_strand="+" ref_description="SGN-E342292 [cTOF-8-G18]">
      <seq>tagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8589" stop="10650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8889" g_stop="9266" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10350" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="630" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E342292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8889" e_stop="9266"/>
          <exon e_start="10098" e_stop="10350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAA</genome_strand>
        <mrna_strand>TAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTC-AAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710232" ref_strand="+" ref_description="SGN-E710232 [FA54CH12]">
      <seq>cgttttacgaaaaccctaccgccgctgctctccttttacccccaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattgggaaaagaggggaaactataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8592" stop="11016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8890" g_stop="9266" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="646" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="739" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10716" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="776" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E710232" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8890" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAA</genome_strand>
        <mrna_strand>CGTTTTACGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCCAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGGAAAAGAGGGGAAACTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560107" ref_strand="+" ref_description="SGN-E560107 [19710]">
      <seq>gggtttcgaaaaccctaccgccgctgctctcctttttccccaaatctgagcaaatcgaaagcaacaatggcggaagaagcacagtacggaacaccagaagccggtaacaacaagaggaagtacgatgatcaaacgacaccgtctcctggtccacgtagacctactggattttctgctccaatcgcttccttatctccttctgatggtgctgctcctccttcttcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgcggatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttcccgaaagattacctggacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8591" stop="10849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8891" g_stop="9266" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="651" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10549" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="702" r_length="51" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E560107" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8891" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCG-AAGATTACCTGGACAGCA</genome_strand>
        <mrna_strand>GGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTTCCCCAAATCTGAGCAAATCGAAAGCAACAATGGCGGAAGAAGCACAGTACGGAACACCAGAAGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGACACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCAATCGCTTCCTTATCTCCTTCTGATGGTGCTGCTCCTCCTTCTTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCGGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCCGAAAGATTACCTGGACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280823" ref_strand="+" ref_description="SGN-E280823 [cLEL-6-D8](-)">
      <seq>agctccgtcagtagaagataaggaagcgatcggagcagaaaatccagtaggtctacgaggaccaggagacggtgccgcttgatcatagtacttcctcttgttgttaccggcatctggtgcaccgtactgtgcttcgtgtgccattgttgctttcgattccctcagatttggggtaaaaggagagcaacgtcggtagggttttcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="9400" stop="8598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9100" g_stop="8891" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E280823" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9100" e_stop="8891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCGTCAGGAGAAGATAAGGAAGCGATCGGAGCAGAAAATCCAGTAGGTCTACGAGGACCAGGAGACGGTGCCGCTTGATCATCGTACTTCCTCTTGTTGTTACCGGCATCTGGTGCACCGTACTGTGCTTCTTCTGCCATTGTTGCTTTCGATTTGCTCAGATTTGGGGTAAAAGGAGAGCAGCGGCGGTAGGGTTTTCGAAACCC</genome_strand>
        <mrna_strand>AGCTCCGTCAGTAGAAGATAAGGAAGCGATCGGAGCAGAAAATCCAGTAGGTCTACGAGGACCAGGAGACGGTGCCGCTTGATCATAGTACTTCCTCTTGTTGTTACCGGCATCTGGTGCACCGTACTGTGCTTCGTGTGCCATTGTTGCTTTCGATTCCCTCAGATTTGGGGTAAAAGGAGAGCAACGTCGGTAGGGTTTTCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702039" ref_strand="+" ref_description="SGN-E702039 [FA17CE09]">
      <seq>ggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattgggaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtcccaattgacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8592" stop="11233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8892" g_stop="9266" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="644" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="737" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="809" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10872" g_stop="10933" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="871" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E702039" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8892" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGG</genome_strand>
        <mrna_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGGAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCCAATTGACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339351" ref_strand="+" ref_description="SGN-E339351 [cTOF-4-A3]">
      <seq>ggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8592" stop="10828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8892" g_stop="9266" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="643" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10528" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="672" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E339351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8892" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTC</genome_strand>
        <mrna_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTC-AAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573403" ref_strand="+" ref_description="SGN-E573403 [32709]">
      <seq>gaaaaccctaccgccgctgctctcctttttccccaaatctgagcaaatcgaaagcaacaatggcggaagaagcacagtacggagcaccagaagccggtaacaacaagaggaagtacgatgatcaaacgacaccgtctcctggtccacgtagacctactggattttctgctccgatcgcttccttatctccttctgatggtgctgttcctccttcttcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagattgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccaatctggagccaaaattcaggttactagagacatggatgctgatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttcccgaagattacctggacagcaatctggaggagaacagttttccttgaaaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8598" stop="10881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8898" g_stop="9266" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="644" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="727" r_length="83" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E573403" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8898" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTG-AAAGTCC</genome_strand>
        <mrna_strand>GAAAACCCTACCGCCGCTGCTCTCCTTTTTCCCCAAATCTGAGCAAATCGAAAGCAACAATGGCGGAAGAAGCACAGTACGGAGCACCAGAAGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGACACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTCCTTCTGATGGTGCTGTTCCTCCTTCTTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATTGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAATCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGAGAACAGTTTTCCTTGAAAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365362" ref_strand="+" ref_description="SGN-E365362 [cLPT-2-D24]">
      <seq>gaaaaccctaccgccgctgctctccttgtacccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggagcaccagatgccggtaacaacaagaggaagtacgatgatcaaacggcaccgtctcctggtccacgtagacctactggattttctgctccgatcgcttccttatcttctcccgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8598" stop="10613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8898" g_stop="9266" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10313" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="586" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E365362" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8898" e_stop="9266"/>
          <exon e_start="10098" e_stop="10313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTACCGCCGCTGCTCTCCTTTTA-CCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTA</genome_strand>
        <mrna_strand>GAAAACCCTACCGCCGCTGCTCTCCTTGTACCCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGAGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGGCACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCCGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722123" ref_strand="+" ref_description="SGN-E722123 [FC16BB07]">
      <seq>aaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccaaatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtaaacctactggattttctgctccgatcgcttccttatcttctcctgacggagctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaaccaaaaggctcaggagatcgctgctaggttgttgaatagggctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaatattgaaataccaaatggcagatttggttgtgattataggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8599" stop="10502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8899" g_stop="9266" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10202" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E722123" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8899" e_stop="9266"/>
          <exon e_start="10098" e_stop="10202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGG-TGTGATTATAGGAAAAG</genome_strand>
        <mrna_strand>AAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAAATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAAACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGAGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAACCAAAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGGGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAATATTGAAATACCAAATGGCAGATTTGGTTGTGATTATAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710601" ref_strand="+" ref_description="SGN-E710601 [FA55DG02]">
      <seq>acaccttaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8602" stop="10845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8900" g_stop="9266" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="636" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10545" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="682" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E710601" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8900" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGAC</genome_strand>
        <mrna_strand>ACACCTTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325479" ref_strand="+" ref_description="SGN-E325479 [cTOC-1-H20]">
      <seq>aaaccctaccgccgctgctctcctttgaccccatatctgagcaaatcgaaagtttcaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8600" stop="10475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8900" g_stop="9266" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10175" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="445" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E325479" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8900" e_stop="9266"/>
          <exon e_start="10098" e_stop="10175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATG</genome_strand>
        <mrna_strand>AAACCCTACCGCCGCTGCTCTCCTTTGACCCCATATCTGAGCAAATCGAAAGTTTCAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588695" ref_strand="+" ref_description="SGN-E588695 [42253]">
      <seq>acctacgccgctgctctccttttccccaaatctgagcaaatcgaaagcaacaatggcggaagaagcacagtacggagcaccagaagccggtaacaacaagaggaagtacgatgatcaaacgacaccgtctcctggtccacgtagacctactggattttctgctccgatcgcttccttatctccttctgatggtgctgttcctccttcttcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagattgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccaatctggagccaaaagtcaggttactagagacatggatgctgatcctaattctacaaataagagcagttgaactcatggtactccagacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8604" stop="10623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8903" g_stop="9266" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10323" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="594" r_length="226" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E588695" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8903" e_stop="9266"/>
          <exon e_start="10098" e_stop="10323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCT-CAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCA</genome_strand>
        <mrna_strand>ACCTA-CGCCGCTGCTCTCCTTTT-CCCCAAATCTGAGCAAATCGAAAGCAACAATGGCGGAAGAAGCACAGTACGGAGCACCAGAAGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGACACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTCCTTCTGATGGTGCTGTTCCTCCTTCTTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATTGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAATCTGGAGCCAAAAGTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAAGAGCAGTTGAACTCAT-GGTACTCCAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454598" ref_strand="+" ref_description="SGN-E454598 [cSTS-23-H8]">
      <seq>ctttttccccaaatctgagcaaatcgaaagcaacaatggcggaagaagcacagtacggagcaccagaagccggtaacaacaagaggaagtacgatgatcaaacgacaccgtctcctggtccacgtagacctactggattttctgctccgatcgcttccttatctccttctgatggtgctgttcctccttcttcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagattgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccaatctggagccaaaattcaggttactagagacatggatgctgatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8622" stop="10651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8922" g_stop="9266" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10351" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="605" r_length="254" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E454598" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8922" e_stop="9266"/>
          <exon e_start="10098" e_stop="10351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAAT</genome_strand>
        <mrna_strand>CTTTTTCCCCAAATCTGAGCAAATCGAAAGCAACAATGGCGGAAGAAGCACAGTACGGAGCACCAGAAGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGACACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTCCTTCTGATGGTGCTGTTCCTCCTTCTTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATTGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAATCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572984" ref_strand="+" ref_description="SGN-E572984 [32223]">
      <seq>gctcctccttcttcttacaacaatgttccgccgcccatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccaatctggagccaaaattcaggttactagagacatggatgctgatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttccagaagattacctggacagcaatctggaggagaacagttttccttgaaagtccccaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcacgtattcaggtgatccctttgcacttgcctcctggtgatacatcacaggaaagaacagttcaaattgactgggtcaagtgaacagattgaggctgctaagcagttggtgtatgaagtaattagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8801" stop="11287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9101" g_stop="9266" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="441" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="534" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="606" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10872" g_stop="10987" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="723" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E572984" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9101" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGAC-GGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGA</genome_strand>
        <mrna_strand>GCTCCTCCTTCTTCTTACAACAATGTTCCGCCGCCCATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAATCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCAGAAGATTACCTGGACAGCAATCTGGAGGAGAACAGTTTTCCTTGAAAGTCCCCAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCACGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGATACATCACAGGAAAGAACAGTTCAAATTGACTGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGTTGGTGTATGAAGTAATTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585619" ref_strand="+" ref_description="SGN-E585619 [68081]">
      <seq>ctaagcagaaggctcaggagattgctgctaggttgttgaatagtgctgaagctaagaaacctagagttgataataacggcggtggtgctggtgctggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccaatctggagccaaaattcaggttactagagacatggatgctgatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttcccgaagattacctggacagcaatctggaggagaacagttttccttgaaagtccccaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcacgtattcaggtgatccctttgcacttgcctccaggtgatacatcacaggaaagaacagttcaaattgatgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagtgagaatcgtgctaggaatcaagggatgtccggaggatatcaacaacaaggttatcaggcccggnctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8856" stop="13840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9156" g_stop="9266" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.73"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="386" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="479" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="551" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10872" g_stop="10988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="668" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13426" g_stop="13535" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="781" r_length="113" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E585619" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9156" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10988"/>
          <exon e_start="13426" e_stop="13535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGC-----C-GGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATC---AACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGG</genome_strand>
        <mrna_strand>CTAAGCAGAAGGCTCAGGAGATTGCTGCTAGGTTGTTGAATAGTGCTGAAGCTAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCTGGTGCTGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAATCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGAGAACAGTTTTCCTTGAAAGTCCCCAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCACGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCAGGTGATACATCACAGGAAAGAACAGTTCAAATTGATGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCCGGAGGATATCAACAACAAGGTTATCAGGCCCGGNCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701243" ref_strand="+" ref_description="SGN-E701243 [FA15BG02]">
      <seq>ggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgccctctggctggggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8872" stop="13976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9172" g_stop="9266" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="364" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="529" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10872" g_stop="10988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="646" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13426" g_stop="13676" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="899" r_length="253" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E701243" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9172" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10988"/>
          <exon e_start="13426" e_stop="13676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATG-CCTCTGGCT-GGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTA</genome_strand>
        <mrna_strand>GGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCCTCTGGCTGGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314716" ref_strand="+" ref_description="SGN-E314716 [cTOA-20-M17]">
      <seq>ttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaagctgaacagttgattaatgaggttctttctgaggcggattctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8891" stop="10667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9191" g_stop="9266" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="345" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10510" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="356" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E314716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9191" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGG</genome_strand>
        <mrna_strand>TTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAAGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCGGATTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271116" ref_strand="+" ref_description="SGN-E271116 [cLEM-22-H1]">
      <seq>ataataactgcggtggtgccggtggatatgattgctatgaacacaagccgattggtactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaatgctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagtttttcttgaaagtccctaacaacaaggttggtcttgttattggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="8925" stop="10999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9225" g_stop="9266" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="311" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="404" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10680" g_stop="10699" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="424" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E271116" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9225" e_stop="9266"/>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAA</genome_strand>
        <mrna_strand>ATAATAACTGCGGTGGTGCCGGTGGATATGATTGCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCGATTGGTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAATGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTTCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444194" ref_strand="+" ref_description="SGN-E444194 [cSTA-42-C11]">
      <seq>atgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggtgccaaaattcaggttactagagacatggatgctgatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttcccgaagattacctggacagcaatctggaggagaacagttttccttgaaagtccccaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcacgtattcaggtgatccctttgcacttgcctccaggtgatacatcacaggaaagaacagttcaaattgatggatcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="9794" stop="11288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="284" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="377" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="449" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10872" g_stop="10988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="566" r_length="117" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E444194" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG</genome_strand>
        <mrna_strand>ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGTGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGAGAACAGTTTTCCTTGAAAGTCCCCAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCACGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCAGGTGATACATCACAGGAAAGAACAGTTCAAATTGATGGATCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601067" ref_strand="+" ref_description="SGN-E601067 [54093]">
      <seq>gcacgaggatgatcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcaaagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgcggatcctaattctacaaatagagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttcccgaagattacctggacagcaatctggaggagaacagttttccttgaaagtccccaacaacaaggttggtcttgtcattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcacgtattcaggtgatccctttgcacttgcctccaggtgatacatcacaggaaagaacagttcaaattgatgggtcaagtgaacagattgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="9794" stop="11254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10098" g_stop="10366" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="291" r_length="269" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="384" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="456" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10872" g_stop="10954" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="539" r_length="83" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E601067" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10098" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGC</genome_strand>
        <mrna_strand>ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAAAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCGGATCCTAATTCTACAAATAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGAGAACAGTTTTCCTTGAAAGTCCCCAACAACAAG.......................................................................................GTTGGTCTTGTCATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCACGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCAGGTGATACATCACAGGAAAGAACAGTTCAAATTGATGGGTCAAGTGAACAGATTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278012" ref_strand="+" ref_description="SGN-E278012 [cLER-4-J3]">
      <seq>agcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggcggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="9851" stop="14392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10151" g_stop="10354" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10355" i_stop="13774" i_length="3420">
            <donor d_prob="0.235" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13775" g_stop="14092" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="522" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E278012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10151" e_stop="10354"/>
          <exon e_start="13775" e_stop="14092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTT</genome_strand>
        <mrna_strand>AGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGCGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576012" ref_strand="+" ref_description="SGN-E576012 [59161]">
      <seq>gagcagttgaactcatgggtactccagaccaaatagctaaggctgaacagttgattactgaggttctttctgaggctgattcaggtggttctggtctagtttcccgaagattacctggacagcaatctggaggagaacagttttccttgaaagtccccaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcacgtattcaggtgatccctttgcacttgcctccaggtgatacatcacaggaaagaacagttcaaattgatgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagtgagaatcgtgctaggaatcaagggatgtccggaggatatcaacaacaaggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatacccatctcaagcatcttatcctggctagcctccacaacctgactctgctggatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="9993" stop="13913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10293" g_stop="10366" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="167" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="239" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10872" g_stop="10988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="356" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13426" g_stop="13613" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="547" r_length="191" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E576012" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10293" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10988"/>
          <exon e_start="13426" e_stop="13613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATAT---CAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGC</genome_strand>
        <mrna_strand>GAGCAGTTGAACTCATGGGTACTCCAGACCAAATAGCTAAGGCTGAACAGTTGATTACTGAGGTTCTTTCTGAG.....................................................................................................................................GCTGATTCAGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGAGAACAGTTTTCCTTGAAAGTCCCCAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCACGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCAGGTGATACATCACAGGAAAGAACAGTTCAAATTGATGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCCGGAGGATATCAACAACAAGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATACCCATCTCAAGCATCTTATCCTGGCTAGCCTCCACAACCTGACTCTGCTGGATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251326" ref_strand="+" ref_description="SGN-E251326 [cLEG-10-P20]">
      <seq>cagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcangaaagaacagtccaaattgacgggtcaagtgaacagaattgaggctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10017" stop="11258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10317" g_stop="10366" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10500" g_stop="10592" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="143" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10680" g_stop="10751" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="215" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10872" g_stop="10958" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="303" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E251326" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10317" e_stop="10366"/>
          <exon e_start="10500" e_stop="10592"/>
          <exon e_start="10680" e_stop="10751"/>
          <exon e_start="10872" e_stop="10958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAG-ATTGAGGCTGCT</genome_strand>
        <mrna_strand>CAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCANGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGAATTGAGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573895" ref_strand="+" ref_description="SGN-E573895 [33277]">
      <seq>ggttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcacgtattcaggtgatccctttgcacttgcctcctggtgatacatcacaggaaagaacagttcaaattgatgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagtgagaatcgtgctaggaatcaagggatgtccggaggatatcaacaacaaggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcccggtgcatacccatctcaaccatcttatcctggataccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtgctgctcaaaatcaacaatctcaggcaggtgggtatgattactacaaccaacaggctccacaacaacagcagcaaactgctggaggttcagctgcttcaactgatactagtgcctatggttacaaccagcaatctgcctctggttacagccaaggacaagcttatgcccaggatggctatggtggatatcatgcacctgccctcaatctggtggttatcaggggttctgggttatgagcagcaacaaggtttatagctctactgctgggttatgggaatgcctcaaaaccaacatcagattggcagaactcgtcatatggtaccaaagtgatggcagtcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10389" stop="14274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10688" g_stop="10751" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10872" g_stop="10988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="181" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13426" g_stop="13974" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="735" r_length="554" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E573895" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10688" e_stop="10751"/>
          <exon e_start="10872" e_stop="10988"/>
          <exon e_start="13426" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATAT---CAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCA-GGGTTCT-GGTTATGAGCAGCAACAAGG-CTATAGCTCTACTGCT-GGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCA</genome_strand>
        <mrna_strand>GGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCACGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGATACATCACAGGAAAGAACAGTTCAAATTGATGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCCGGAGGATATCAACAACAAGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCCGGTGCATACCCATCTCAACCATCTTATCCTGGATACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGCTGCTCAAAATCAACAATCTCAGGCAGGTGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAACTGCTGGAGGTTCAGCTGCTTCAACTGATACTAGTGCCTATGGTTACAACCAGCAATCTGCCTCTGGTTACAGCCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGCACCTG-CCCTCAATCTGGTGGTTATCAGGGGTTCTGGGTTATGAGCAGCAACAAGGTTTATAGCTCTACTGCTGGGTTATGGGAATGCCTCAAAACCAACATCAGATTGGCAGAACTCGTCATATGGT-ACCAAAGTGATGGCAGTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331794" ref_strand="+" ref_description="SGN-E331794 [cTOD-7-C4]">
      <seq>tcagttcggattgcaggctgcaagaacgggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10428" stop="14132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10728" g_stop="10751" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="43" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10872" g_stop="10988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="160" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13426" g_stop="13832" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="567" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E331794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10728" e_stop="10751"/>
          <exon e_start="10872" e_stop="10988"/>
          <exon e_start="13426" e_stop="13832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGC</genome_strand>
        <mrna_strand>GCAAGAACGGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246936" ref_strand="+" ref_description="SGN-E246936 [cLEF-41-J22]">
      <seq>aggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10609" stop="14143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10909" g_stop="10988" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13426" g_stop="13843" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="498" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E246936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10909" e_stop="10988"/>
          <exon e_start="13426" e_stop="13843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTG</genome_strand>
        <mrna_strand>AGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703402" ref_strand="+" ref_description="SGN-E703402 [FA21BF02]">
      <seq>gaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcangctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaagctcaaaaacctcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10611" stop="14472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10911" g_stop="10988" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13426" g_stop="14172" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="825" r_length="747" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E703402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10911" e_stop="10988"/>
          <exon e_start="13426" e_stop="14172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACT</genome_strand>
        <mrna_strand>GAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCANGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAAGCTCAAAAACCTCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740365" ref_strand="+" ref_description="SGN-E740365 [LC21AE09]">
      <seq>ctctaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcangcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccaacgcaacccgggtatcctcaacccactgctcaacctcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10621" stop="14580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10920" g_stop="10988" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13426" g_stop="14280" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="924" r_length="855" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E740365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10920" e_stop="10988"/>
          <exon e_start="13426" e_stop="14280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCA</genome_strand>
        <mrna_strand>CTCTAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCANGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAACGCAACCCGGGTATCCTCAACCCACTGCTCAACCTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592331" ref_strand="+" ref_description="SGN-E592331 [46062]">
      <seq>gattgaggctgctaagcagctggtgtatgaagtaattagtgagaatcgtgctaggaatcaagggatgtccggaggatatcaacaacaaggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcccggtgcatacccatctcaaccatcttatcctggataccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtgctgctcaaaatcaacaatctcaggcaggtgggtatgattactacaaccaacaggctccacaacaacagcagcaaactgctggaggttcagctgcttcaactgatactagtgcctatggttacaaccagcaatctgcctctggttacagccaaggacaagcttatgcccaggatggctatggtggatatcatgcacctgcccctcaatctggtggttatcagggttctggttatgagcagcaacaaggttatagctctactgctggttatgggaatgcctcaaacccaacatcagatggccagaactcgtcatatggtacccaaagtgatggcagtcaagcacctccaccagcatcagccacgggtcaacaaggatatcattctggccagcagcccagccctaatcctagttacccatctcaaggctctgctcaggctggatatggggttcccccaacttctcaatgtgggtatggtacacagccagctggaagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10646" stop="14430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10946" g_stop="10988" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13426" g_stop="14130" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="751" r_length="708" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E592331" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10946" e_stop="10988"/>
          <exon e_start="13426" e_stop="14130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATC---AACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTAT</genome_strand>
        <mrna_strand>GATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCCGGAGGATATCAACAACAAGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCCGGTGCATACCCATCTCAACCATCTTATCCTGGATACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGCTGCTCAAAATCAACAATCTCAGGCAGGTGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAACTGCTGGAGGTTCAGCTGCTTCAACTGATACTAGTGCCTATGGTTACAACCAGCAATCTGCCTCTGGTTACAGCCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGCACCTGCCCCTCAATCTGGTGGTTATCAGGGTTCTGGTTATGAGCAGCAACAAGGTTATAGCTCTACTGCTGGTTATGGGAATGCCTCAAACCCAACATCAGATGGCCAGAACTCGTCATATGGTACCCAAAGTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACGGGTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGTTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTTCCCCCAACTTCTCAATGTGGGTATGGTACACAGCCAGCTGGAAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439850" ref_strand="+" ref_description="SGN-E439850 [cSTA-13-F20]">
      <seq>gattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtccggaggatatcaacaacaaggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatacccatctcaaccatcttatcctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtgctgctcaaaatcaacaatctcaggcaggtgggtatgattactacaaccaacaggctccacaacaacagcagcaaactgctggaggttcagctgcttcaactgatactagtgcctacggttacaaccagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10646" stop="14066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10946" g_stop="10988" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13426" g_stop="13766" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="387" r_length="344" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E439850" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10946" e_stop="10988"/>
          <exon e_start="13426" e_stop="13766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATAT---CAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACC</genome_strand>
        <mrna_strand>GATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCCGGAGGATATCAACAACAAGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATACCCATCTCAACCATCTTATCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGCTGCTCAAAATCAACAATCTCAGGCAGGTGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAACTGCTGGAGGTTCAGCTGCTTCAACTGATACTAGTGCCTACGGTTACAACCAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738196" ref_strand="+" ref_description="SGN-E738196 [LC12CH10]">
      <seq>attatattttttcagcagtggtgaaatttgctgacacattaagttacagtttactttgttgctagagcatcatgaatgagaaattaataatccaatatatgacttcattaggatcttcatgatctgtatctgcaagtttcatgtatgtgtgttgctgtcaattacctatatccgtccttgcatcgctagaattcatagtgtttgcagatcattttgccagtcctcttcttggtcgacagcgtcagttaatgggaattctagttcatgtcagtgacccctggatgaaggagattggctcttgctgtgcttcattttttggaaggaagtattcttattaatattggagatatgctttctagttgcaaagtaggtctttgcgagtattttgctccactcttaactatagctccattactttaaatagaaggattaatagattgttatccacataatatatctgtaatgtgacatgacacctacatatgtcaaccttttttcccatcagttctttttaattagttggatgttgctggagcaagagatcagtttctaacccaaggcattatcaggtttaagatgacttatcaaaatgtttagttgcctcaatgtctattgatctatatttcattggactttagatgttgtgatttttgtgaggcgcaggttttggggaggttctccttgaaggtaactaagtctgtctaaaaattttccgtaatattgaggatatattataatctgagatgtgcaataactcttggtttaatggtttgggtacttggttaatatcaagagacaacatataactattctggttaattttgtatctgatcactgatattattattggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="10984" stop="12437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11284" g_stop="12137" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E738196" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11284" e_stop="12137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-ATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAAT</genome_strand>
        <mrna_strand>ATTATATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347159" ref_strand="+" ref_description="SGN-E347159 [cTOF-25-A22]">
      <seq>agtaaatgagggactgattttgctaggatttgcaatggaggaaactaagatttgttgagatttatcattgttatcttttaggtgtcaatcttgagatattatatgaatgtactacataagtgttgtaacaaagagtgtttggtgtaattatctattgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagtgctttatttggtttctctcaagaaaaatccattactttcattactaagccactagtatctgattttccctttctccatagaccttttagtcatggctatgaagatcgaacttcctttgaggtttggagtgctttaaggatcattagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacttnaagtgcactgctcttgctgctttgcgacacatcatatttattcttatattgaagtttgtcgtttctctaattcgcatgtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="11964" stop="13246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12264" g_stop="12946" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E347159" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12264" e_stop="12946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTG</genome_strand>
        <mrna_strand>AGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACTTNAA-GTGCACTGCTCTTGCTGCTTTGCG-ACACATCATATTTATTCTT-ATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200952" ref_strand="+" ref_description="SGN-E200952 [cLEC-5-A19]">
      <seq>tagtgttgcaacaaagagtgtttggtgtaattatctattgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagggctttatttggtttctctcaagaacaatccattactttcattactaagccactagtatctgattttgcctttctccatagaccatttagtcatggctatgaagatcgaacttcctttgaggtttggagtgcttgaaggatcattaatatgtcagttctgtgtgttcacgtcttgattcttagcagtgctgttaggctcgcatctcttattatcaaacaatggaatcattgcccttcaagtgtgatgtggcatgtatgaatctgctttctggcggcgttaataatgacatctattatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="12082" stop="13074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12381" g_stop="12774" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E200952" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12381" e_stop="12774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCAC</genome_strand>
        <mrna_strand>TAGTGTTGCAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGGGCTTTATTTGGTTTCTCTCAAGAACAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTGCCTTTCTCCATAGACCATTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTGAAGGATCATTAATATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTGCTGTTAGGCTCGCATCTCTTATTATCAAACAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTATGAATCTGCTTTCTGGCGGCGTTAATAATGACATCTATTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332674" ref_strand="+" ref_description="SGN-E332674 [cTOD-18-L22]">
      <seq>ttgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagtgctttatttggtttctctcaagaaaaatccattactttcattactaagccactagtatctgattttccctttctccatagaccttttagtcatggctatgaagatcgaacttcctttgaggtttggagtgctttaaggatcattagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacctcaaggtgcactgctcttgctgctttgcgaacacatcatatttattcttaatattgaagtttgtcgtttctctaattcgcatgtcattgaaacagttatacaacttctctgggtatataaatttgaatacaccatatcattattatataaaattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatnctatagtggtatcttgctatcttaagaagtatcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="12118" stop="13435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12418" g_stop="13135" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E332674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12418" e_stop="13135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCC</genome_strand>
        <mrna_strand>TTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATNCTATAGTGGTATCTTGCTATCTTAAGAAGTATCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302207" ref_strand="+" ref_description="SGN-E302207 [cLEW-19-M11]">
      <seq>ttagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacctcaaagtgcactgctcttgctgctttgcgaacacatcatatttattcttaatattgaagtttgtcgtttctctaattcgcatgtcattgaaacagttatacaacttctctgggtatataaatttgaatacaccatatcattattatataaaattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="12318" stop="13490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12618" g_stop="13190" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E302207" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12618" e_stop="13190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAA</genome_strand>
        <mrna_strand>TTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAAGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697677" ref_strand="+" ref_description="SGN-E697677 [FA03DB06]">
      <seq>ccgattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaaatagggtgaggatgagcatctgccaggagttttgtacctcccaaccagtaagtcttacatctgtcttgatgcatacctaatattaattgttatatgtttgtggtataagttactgtttcatctgctatgattatgctacctgggtgtggcttagtctgcccttgcaatgtgagttatttaaatatgcttgaatcaatcatattcttggttagtttagacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttaccaaccagcaacctgcctcaggttacggtcaaggacaagcttatgccccaggatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="12709" stop="14111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13006" g_stop="13811" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E697677" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13006" e_stop="13811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTA-CAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATG-CCCAGGATGGCTA</genome_strand>
        <mrna_strand>CCGATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACCAACCAGCAACCTGCCTCAGGTTACGGTCAAGGACAAGCTTATGCCCCAGGATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697596" ref_strand="+" ref_description="SGN-E697596 [FA03CB05]">
      <seq>cgattctctgcttatgacatataatgaacagattactacatcctattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaaatagggtgaggatgagcatctgccaggagttttgtacctcccaaccagtaagtcttacatctgtcttgatgcatacctaatattaattgttatatgtttgtggtataagttactgtttcatctgctatgattatgctacctgggtgtggcttagtctgcccttgcaatgtgagttatttaaatatgcttgaatcaatcatattcttggttagtttagacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttccactgataataatgcctatggttacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="12709" stop="14058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13007" g_stop="13758" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E697596" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13007" e_stop="13758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAAC</genome_strand>
        <mrna_strand>CGATTCTCTGCTTATGACATATAATGAACAGATTACTACATCCTATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCCACTGATAATAATGCCTATGGTTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729426" ref_strand="+" ref_description="SGN-E729426 [LA21AB03]">
      <seq>gaggtctatacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcangctcaaaaacctcctactcangcaagctatgggtcaccacagcagtctcctagtgcacaagctggttatgcccagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13102" stop="14533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13399" g_stop="14233" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E729426" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13399" e_stop="14233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTG</genome_strand>
        <mrna_strand>GAGGTCTATACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCANGCTCAAAAACCTCCTACTCANGCAAGCTATGGGTCACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701705" ref_strand="+" ref_description="SGN-E701705 [FA16CH04]">
      <seq>atcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcangcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcangttatgcccaggctgatcccaacgcccagcgaactccctcttctgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13127" stop="14631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13427" g_stop="14331" g_length="905"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="905" r_length="905" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E701705" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13427" e_stop="14331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATAT</genome_strand>
        <mrna_strand>ATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCANGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCANGTTATGCCCAGGCTGATCCCAACGCCCAGCGAACTCCCTCTTCTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705311" ref_strand="+" ref_description="SGN-E705311 [FA26DA11]">
      <seq>gtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcangcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcangttatgcccaggctgatcccaacgcccagcgacctccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13130" stop="14622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13430" g_stop="14322" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="893" r_length="893" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E705311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13430" e_stop="14322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCT</genome_strand>
        <mrna_strand>GTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCANGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCANGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272286" ref_strand="+" ref_description="SGN-E272286 [cLEM-19-J15]">
      <seq>tatggtcagcctggtgcatatccttctcaaccatcttaccgtggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13237" stop="14351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13537" g_stop="14051" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E272286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13537" e_stop="14051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATC</genome_strand>
        <mrna_strand>TATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCGTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706667" ref_strand="+" ref_description="SGN-E706667 [FA30CD06]">
      <seq>cctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13285" stop="14764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13585" g_stop="14464" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="880" r_length="880" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E706667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13585" e_stop="14464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</genome_strand>
        <mrna_strand>CCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370283" ref_strand="+" ref_description="SGN-E370283 [TUS-28-C13]">
      <seq>ctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13289" stop="14536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13589" g_stop="14236" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E370283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13589" e_stop="14236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCC</genome_strand>
        <mrna_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318621" ref_strand="+" ref_description="SGN-E318621 [cTOB-9-L11]">
      <seq>ctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacacgcttatgcccaggatgggtatggaggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctgaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctacaccatcatcagccacagctgaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13289" stop="14448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13589" g_stop="14148" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E318621" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13589" e_stop="14148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCT</genome_strand>
        <mrna_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACACGCTTATGCCCAGGATGGGTATGGAGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTGAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTACACCATCATCAGCCACAGCTGAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270671" ref_strand="+" ref_description="SGN-E270671 [cLEM-6-E12]">
      <seq>ctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13289" stop="14183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13589" g_stop="13879" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E270671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13589" e_stop="13879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAG</genome_strand>
        <mrna_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326607" ref_strand="+" ref_description="SGN-E326607 [cTOC-17-C17]">
      <seq>tcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagacctaatcctagctacccatctcaaggctctgctcaagctggatatggggtgcccccaacttctcgaggtgggtatggtacacagccagctggaggctatgctgctacttatggggctcctcaggctcaaagacctcctactcaggcaagctatggtcaaccacagcagactcctaggccacaagctggttatgctcagcctgcaccatcgcaacccgggtatcctcaaccagctgctccagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13326" stop="14623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13626" g_stop="14323" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E326607" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13626" e_stop="14323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTT</genome_strand>
        <mrna_strand>TCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGACCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAAGCTGGATATGGGGTGCCCCCAACTTCTCGAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTACTTATGGGGCTCCTCAGGCTCAAAGACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGACTCCTAGGCCACAAGCTGGTTATGCTCAGCCTGCACCATCGCAACCCGGGTATCCTCAACCAGCTGCTCCAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697578" ref_strand="+" ref_description="SGN-E697578 [FA03BH03]">
      <seq>cgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcaaccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13336" stop="14711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13635" g_stop="14411" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E697578" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13635" e_stop="14411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTA</genome_strand>
        <mrna_strand>CGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAACCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697841" ref_strand="+" ref_description="SGN-E697841 [FA04BH01]">
      <seq>cccattctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13348" stop="14277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13646" g_stop="13977" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E697841" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13646" e_stop="13977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCT</genome_strand>
        <mrna_strand>CCCATTCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706326" ref_strand="+" ref_description="SGN-E706326 [FA29CF05]">
      <seq>caggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13358" stop="14759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13658" g_stop="14459" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E706326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13658" e_stop="14459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGA</genome_strand>
        <mrna_strand>CAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699877" ref_strand="+" ref_description="SGN-E699877 [FA11BH03]">
      <seq>gattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13369" stop="14756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13669" g_stop="14456" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E699877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13669" e_stop="14456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTC</genome_strand>
        <mrna_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729038" ref_strand="+" ref_description="SGN-E729038 [LA19DB03]">
      <seq>gattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaaacaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13369" stop="14720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13669" g_stop="14420" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E729038" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13669" e_stop="14420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGC</genome_strand>
        <mrna_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAAACAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248137" ref_strand="+" ref_description="SGN-E248137 [cLEF-55-E19]">
      <seq>tacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaagttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcaaggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaagctctgctcaagctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13375" stop="14443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13675" g_stop="14143" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E248137" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13675" e_stop="14143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATG</genome_strand>
        <mrna_strand>TACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAAGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAAGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAAGCTCTGCTCAAGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260946" ref_strand="+" ref_description="SGN-E260946 [cLEG-55-N7]">
      <seq>aacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctcccttacacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13394" stop="14764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13694" g_stop="14464" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E260946" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13694" e_stop="14464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</genome_strand>
        <mrna_strand>AACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCCTTACACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260924" ref_strand="+" ref_description="SGN-E260924 [cLEG-55-F9]">
      <seq>gcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13401" stop="14523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13701" g_stop="14223" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E260924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13701" e_stop="14223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTAT</genome_strand>
        <mrna_strand>GCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275685" ref_strand="+" ref_description="SGN-E275685 [cLEN-18-D17]">
      <seq>gcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaagttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcaaggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13404" stop="14354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13704" g_stop="14054" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E275685" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13704" e_stop="14054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCA</genome_strand>
        <mrna_strand>GCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAAGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAAGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583409" ref_strand="+" ref_description="SGN-E583409 [9230]">
      <seq>gttacagccaaggacaagcttatgcccaggatggctatggtggatatcacgcacctgctcctcaatctggtggttatcagggttctggttatgagcagcaacaaggttatagctctactgctggctatgggaatgcctcaaacccaacatcagatggccagaactcgtcatatggtacccaaagtgatggcagtcaagcacctccaccagcatcagccacgggtcaacaaggcatatcattctggccagcagcccagccctaatcctagttacccatctcaaggctctgctcaggctggatatggggtgcccccaaattctcaaggtgggtatggtacacagccaggctggaggctattgctgctagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13475" stop="14442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13775" g_stop="14142" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E583409" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13775" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGG-ATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCA-GCTGGAGGCTA-TGCTGCTAGTTAT</genome_strand>
        <mrna_strand>GTTACAGCCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCACGCACCTGCTCCTCAATCTGGTGGTTATCAGGGTTCTGGTTATGAGCAGCAACAAGGTTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGATGGCCAGAACTCGTCATATGGTACCCAAAGTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACGGGTCAACAAGGCATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGTTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAAATTCTCAAGGTGGGTATGGTACACAGCCAGGCTGGAGGCTATTGCTGCTAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713729" ref_strand="+" ref_description="SGN-E713729 [FB09BH11]">
      <seq>ccgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctaattatggacagcagccacctccttacaaaaacgcctatggtgcttactcccagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13525" stop="14742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13823" g_stop="14442" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E713729" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13823" e_stop="14442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCA</genome_strand>
        <mrna_strand>CCGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAATTATGGACAGCAGCCACCTCCTTACAAAAACGCCTATGGTGCTTACTCCCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608052" ref_strand="+" ref_description="SGN-E608052 [24031]">
      <seq>ctcaatctggtggttatcagggttctggttatgagcagcaacaaggttatagctctactgctggttatgggaatgcctcaaacccaacatcagatggccagaactcgtcatatggtacccaaagtgatggcagtcaagcacctccaccagcatcagccacgggtcaacaaggatatcattctggccagcagcccagccctaatcctagttacccatctcaaggctctgctcaggctggatatggggttcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggcccctcaggctcaaaagcctcctagtcaggcaagttatggtcaaccacagcagtctcctagtgcacaagctggttatgctcagcctcccactgcgcaacccgggtatcctcaaccagctgctcaatcaggttatacccaggctgatcccaatgctcagcgacctccctcttctgcctatggtgctccaccagctcagccagcttatggtgcccagtcttatggcgccccgccaagttatggccagcagccgccaccttacaacagtgcctatggtgcttactcccagnctccagcatatgcttctgaagcagntccaanctcgcagtctgttccacctagtggtggggttgcaaaagcatcacctcagagttagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13535" stop="14830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13835" g_stop="14530" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E608052" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13835" e_stop="14530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATC</genome_strand>
        <mrna_strand>CTCAATCTGGTGGTTATCAGGGTTCTGGTTATGAGCAGCAACAAGGTTATAGCTCTACTGCTGGTTATGGGAATGCCTCAAACCCAACATCAGATGGCCAGAACTCGTCATATGGTACCCAAAGTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACGGGTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGTTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTTCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCCCCTCAGGCTCAAAAGCCTCCTAGTCAGGCAAGTTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCTCAGCCTCCCACTGCGCAACCCGGGTATCCTCAACCA---GCT---GCTCAATCAGGTTATACCCAGGCTGATCCCAATGCTCAGCGACCTCCCTCTTCTGCCTATGGTGCTCCACCAGCTCAGCCAGCTTATGGTGCCCAGTCTTATGGCGCCCCGCCAAGTTATGGCCAGCAGCCGCCACCTTACAACAGTGCCTATGGTGCTTACTCCCAGNCTCCAGCATATGCTTCTGAAGCAGNTCCAANCTCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCAAAAGCATCACCTCAGAGTTAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406568" ref_strand="+" ref_description="SGN-E406568 [PPI-4-A8]">
      <seq>tcaatctggtggttatcagggttctggttatgaacagcaacaaggttatagctctactgctggctatgggaatgcctcaaacccaacatcagatggccagaactcgtcatatggtacccaaagtgatggcagtcaagcacctccaccagcatcagccacgggtcaacaaggatatcattctggccagcagcccagccctaatcctagttacccatctcaaggctctgctcaagctggatatggggtgcccccaacttctcaaggtgggtatggtacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13536" stop="14413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13836" g_stop="14113" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E406568" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13836" e_stop="14113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACAC</genome_strand>
        <mrna_strand>TCAATCTGGTGGTTATCAGGGTTCTGGTTATGAACAGCAACAAGGTTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGATGGCCAGAACTCGTCATATGGTACCCAAAGTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACGGGTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGTTACCCATCTCAAGGCTCTGCTCAAGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569045" ref_strand="+" ref_description="SGN-E569045 [13423]">
      <seq>gctggttatgggaatgcctcaaacccaacatcagatggccagaactcgtccattatggtacccaaagtgatggcagtcaagcacctccaccagcatcagccacgggtcaacaaggatatcattctggccagcagcccagccctaatcctagttacccatctcaaggctctgctcaaggctggatatggggttcccccaacttctcaagggtgggtatggtacacagccagctggaggctatgctgctagtaatggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13594" stop="14447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13894" g_stop="14148" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E569045" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13894" e_stop="14148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGT-C-GTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTC-AGGCTGGATATGGGGTGCCCCCAACTTCTCAA-GGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCT</genome_strand>
        <mrna_strand>GCTGGTTATGGGAATGCCTCAAACCCAACATCAGATGGCCAGAACTCGTCCATTATGGTACCCAAAGTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACGGGTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGTTACCCATCTCAAGGCTCTGCTCAAGGCTGGATATGGGGTTCCCCCAACTTCTCAAGGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTAATGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469623" ref_strand="+" ref_description="SGN-E469623 [cSTB-12-D12]">
      <seq>ctggctatgggaatgcctcaaacccaacatcagatggccagaactcgtcatatggtacccaaagtgatggcagtcaagcacctccaccagcatcagccacgggtcaacaaggatatcattctggccagcagcccagccctaatcctagttacccatctcaaggctctgctcaggctggatatggggtgcctccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatgggacccctcaggctcaaaagcctcctagtcaggcaagttatggtcaaccacagcagtctcctagtgcacaagctggttatgctcagcctcccacggcgcaacccgggtatcctcaaccagctgctcaatcaggttatgcccaggctgatcccaatgttcagcgacctccctcttctgcctatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgttccaccaagttatggccagcagccaccaccttacaacagtgcctatggtggttactcccagcctccagcatatgcttctgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13595" stop="14762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13895" g_stop="14462" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E469623" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13895" e_stop="14462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGC</genome_strand>
        <mrna_strand>CTGGCTATGGGAATGCCTCAAACCCAACATCAGATGGCCAGAACTCGTCATATGGTACCCAAAGTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACGGGTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGTTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCTCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGACCCCTCAGGCTCAAAAGCCTCCTAGTCAGGCAAGTTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCTCAGCCTCCCACGGCGCAACCCGGGTATCCTCAACCA---GCT---GCTCAATCAGGTTATGCCCAGGCTGATCCCAATGTTCAGCGACCTCCCTCTTCTGCCTATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGTTCCACCAAGTTATGGCCAGCAGCCACCACCTTACAACAGTGCCTATGGTGGTTACTCCCAGCCTCCAGCATATGCTTCTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591126" ref_strand="+" ref_description="SGN-E591126 [44831]">
      <seq>aacctaaagataactaagcaacagaagtaagaaattgtcttaaaaagatccacttaaacatatgaaaaagactgatattaactctgaggtgatgcttttgcaaccccaccactaggtggaacagactgcgaggttggagctgcttcagaagcatatgctggaggctgggagtaaccaccataggcactgttgtaaggtggtggctgctggccataacttggcggagcgccataagactgggcaccataacctggctgagctggtggagcaccataggcagaagagggaggtcgctgagcattgggatcagcctgggcataacctgattgagcagctggttgaggatacccgggttgcgctgtgggaggctgagcataaccagcttgtgcactaggagactgctgtggttgaccataacttgcctgactaggaggtttttgagcctgaggggtcccataactagcagcatagcctccagctggctgtgtaccatacccaccttgagaagttgggggcaccccatatccagcctgagcagagccttgagatgggtaactaggattagggctgggctgctggccagaatgatatccttgttgacccgtggctgatgctggtggaggtgcttgactgccatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="14905" stop="13656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14605" g_stop="13956" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E591126" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14605" e_stop="13956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTAAAGATAACTAAGCAACAAAAGCAAGAAATTGTTTTTAAAAGATTCACCCAAAAACATACGAAAGAGACTGATATTAACTCGGAGGTGAAGCTTTGGCAACCCCACCACTAGGTGGAACAGACTGCGCAGTTGGAGCTGCTTCAGAAGCATATGCTTGTGGCTGGGAGTAAGCACCATAGGCGCTGTTGTAAGGAGGTGGCTGCTGTCCATAACTAGGCGGAGCGCCATAAGACTGGGCACCATAACCTGGCTGAGCTGGTGGAGCACCATATGCAGAAGAGGGAGGTCGCTGGGCGTTGGGATCAGCCTGGGCATAACCTGATTGAGCTTGAGCAGCTGGTTGAGGATACCCGGGTTGCGCTGGGGCAGGCTGGGCATAACCAGCTTGTGCACTAGGAGACTGCTGTGGTTGACCATAGCTTGCCTGAGTAGGAGGTTTTTGAGCCTGAGGAGCCCCATAACTAGCAGCATAGCCTCCAGCTGGCTGTGTACCATACCCACCTTGAGAAGTTGGGGGCACCCCATATCCAGCCTGAGCAGAGCCTTGAGATGGGTAGCTAGGATTAGGGCTGGGCTGCTGGCCAGAATGATATCCTTGTTGAGCTGTGGCTGATGCTGGTGGAGGTGCTTGACTGCCATCAGTT</genome_strand>
        <mrna_strand>AACCTAAAGATAACTAAGCAACAGAAGTAAGAAATTGTCTTAAAAAGA-TC-CACTTAAACATATGAAAAAGACTGATATTAACTCTGAGGTGATGCTTTTGCAACCCCACCACTAGGTGGAACAGACTGCGAGGTTGGAGCTGCTTCAGAAGCATATGCTGGAGGCTGGGAGTAACCACCATAGGCACTGTTGTAAGGTGGTGGCTGCTGGCCATAACTTGGCGGAGCGCCATAAGACTGGGCACCATAACCTGGCTGAGCTGGTGGAGCACCATAGGCAGAAGAGGGAGGTCGCTGAGCATTGGGATCAGCCTGGGCATAACC----TGA--TTGAGCAGCTGGTTGAGGATACCCGGGTTGCGCTGTGGGAGGCTGAGCATAACCAGCTTGTGCACTAGGAGACTGCTGTGGTTGACCATAACTTGCCTGACTAGGAGGTTTTTGAGCCTGAGGGGTCCCATAACTAGCAGCATAGCCTCCAGCTGGCTGTGTACCATACCCACCTTGAGAAGTTGGGGGCACCCCATATCCAGCCTGAGCAGAGCCTTGAGATGGGTAACTAGGATTAGGGCTGGGCTGCTGGCCAGAATGATATCCTTGTTGACCCGTGGCTGATGCTGGTGGAGGTGCTTGACTGCCATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370282" ref_strand="+" ref_description="SGN-E370282 [TUS-28-C13](-)">
      <seq>agcatcagccacagctcaacaagaatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13683" stop="14984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13983" g_stop="14683" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E370282" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13983" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTT</genome_strand>
        <mrna_strand>AGCATCAGCCACAGCTCAACAAGAATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598734" ref_strand="+" ref_description="SGN-E598734 [51706]">
      <seq>ctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggcccctcaggctcaaaagcctcctagtcaggcaagttatggtcaaccacagcagtctcctagtgcacaagctggttatgctcagcctcccactgcgcaacccgggtatcctcaaccagctgctcaatcaggttatacccaggctgatcccaacgctcagcgacctccctcttctgcctatggtgctccaccagctcagccagcttatggtgcccagtcttatggcgccccgccaagttatggccagcagccaccaccttacaacagtgcctatggtggttactcccagcctccagcatatgcttctgaagcagctccaacctcgcagtctgttccacctagtggtggggttgcaaaagcatcacctcagagttaatatcagtctttgtcatatgtttaagcggatcttttgaagacaatttcttacttctgttgcttagttatctttagggtttcgtaggtgtatcaagcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13769" stop="14925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14069" g_stop="14625" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E598734" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14069" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTA-GGTTTTGTAGAT-TATCAAACAGTG</genome_strand>
        <mrna_strand>CTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCCCCTCAGGCTCAAAAGCCTCCTAGTCAGGCAAGTTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCTCAGCCTCCCACTGCGCAACCCGGGTATCCTCAACCA---GCT---GCTCAATCAGGTTATACCCAGGCTGATCCCAACGCTCAGCGACCTCCCTCTTCTGCCTATGGTGCTCCACCAGCTCAGCCAGCTTATGGTGCCCAGTCTTATGGCGCCCCGCCAAGTTATGGCCAGCAGCCACCACCTTACAACAGTGCCTATGGTGGTTACTCCCAGCCTCCAGCATATGCTTCTGAAGCAGCTCCAACCTCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCAAAAGCATCACCTCAGAGTTAATATCAGTCTTTGTCATATGTTTAAGCG-G-ATCTTTTGAAGACAATTTCTTACTTCTGTTGCTTAGTTATCTTTAGGGTTTCGTAGGTGTATCAAGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229859" ref_strand="+" ref_description="SGN-E229859 [cLEL-33-P23](-)">
      <seq>gtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13950" stop="14954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14250" g_stop="14653" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="421"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E229859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14250" e_stop="14653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</genome_strand>
        <mrna_strand>GTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390265" ref_strand="+" ref_description="SGN-E390265 [TUS-40-I3]">
      <seq>agctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13962" stop="14994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14262" g_stop="14695" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="444"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E390265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14262" e_stop="14695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390481" ref_strand="+" ref_description="SGN-E390481 [TUS-40-I3](-)">
      <seq>agctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13962" stop="14994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14262" g_stop="14695" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="444"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E390481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14262" e_stop="14695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312948" ref_strand="+" ref_description="SGN-E312948 [cTOA-14-K13]">
      <seq>gctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcggttaagtagttttatctttcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="13963" stop="14994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14263" g_stop="14695" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="443"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E312948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14263" e_stop="14695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>GCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGGTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230359" ref_strand="+" ref_description="SGN-E230359 [cLEL-33-P23](-)">
      <seq>ctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="14024" stop="14954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14324" g_stop="14653" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="347"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E230359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14324" e_stop="14653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</genome_strand>
        <mrna_strand>CTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698233" ref_strand="+" ref_description="SGN-E698233 [FA05CG02]">
      <seq>gctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="14035" stop="14950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14335" g_stop="14650" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E698233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14335" e_stop="14650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCC</genome_strand>
        <mrna_strand>GCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220967" ref_strand="+" ref_description="SGN-E220967 [cLEL-22-G1](-)">
      <seq>agccacctccttacgacagcgcttatggaggttactgccaacatctagcatatgcttttgaagcagctccacctgcgcagtgtgttccccctagtggtgtggttgtcaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcgtttaaaagcaatttctagcttttgttggttagttatcattaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="14141" stop="14994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14399" g_stop="14695" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="314"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E220967" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14399" e_stop="14695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>AGCCACCTCCTTACGACAGCGCTTATGGAGGTTACTGCCAACATCTAGCATATGCTTTTGAAGCAGCTCCACCTGCGCAGTGTGTTCCCCCTAGTGGTGTGGTTGTCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCGTTTAAAAGCAATTTCTAGCTTTTGTTGGTTAGTTATCATTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230046" ref_strand="+" ref_description="SGN-E230046 [cLEL-33-K6](-)">
      <seq>tatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="14122" stop="14994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14422" g_stop="14695" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="290"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E230046" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14422" e_stop="14695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>TATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230158" ref_strand="+" ref_description="SGN-E230158 [cLEL-33-C7](-)">
      <seq>ctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttccgttgggtgtgttctcgagtaaagtacctatggtgttgccatgttaaccccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="14165" stop="15039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14465" g_stop="14740" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="301"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E230158" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14465" e_stop="14740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</genome_strand>
        <mrna_strand>CTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738520" ref_strand="+" ref_description="SGN-E738520 [LC13DH06]">
      <seq>ttactcttcaatcttcaagtttttcttcacgattgtgctgaatttaggtataattccatagttttcgcttctagcaatgccaaaaaagagtaattcgaagaagcctaaaccagtggaagtagcagcagctgctgttgtagaaaaggagaaaccagtttcttcgtctaaacccaaaaagcccggcagtgaaatcgacgatatatttgccggaaaaaagaggaagaaaccggaattacaagaaaaatcaagcggagttgctgttacagagccgaaaaaggcgaagaaaagcaaggaaaatagtggtaggattccgaaagataatgtgttatctgagccaccacgtcggtcgaggaagaaaacggcagatgggtttactttatacacagaagaggagttgggtattgggaggtctaatgctggaggtacttcactttgcccttttgattgtgactgttgtttttagtgaattttgaaagaaattgtttgagattgaatgaattatatcagttttgtaatgaatttgtagtagtatatgtccgtttcgaggatgaagttttgttctttttactgactggtgtaagctgtaacagttttatttgaatgcatgaggaattttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="33249" stop="32025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32949" g_stop="32320" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E738520" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32949" e_stop="32320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTTCAATCTTCAAGTTTTTCTTCACGATTGTGCTGAATTTAGGTATAATTCCATAGTTTTCGCTTCTAGCAATGCCAAAAAAGAGTAATTCGAAGAAGCCTAAACCAGTGGAAGTAGCAGCAGCTGCTGTTGTAGAAAAGGAGAAACCAGTTTCTTCGTCTAAACCCAAAAAGCCCGGCAGTGAAATCGACGATATATTTGCCGGAAAAAAGAGGAAGAAACCGGAATTACAAGAAAAATCAAGCGGAGTTGCTGTTACAGAGCCGAAAAAGGCGAAGAAAAGCAAGGAAAATAGTGGTAGGATTCCGAAAGATAATGTGTTATCTGAGCCACCACGTCGGTCGAGGAAGAAAACGGCAGATGGGTTTACTTTATACACAGAAGAGGAGTTGGGTATTGGGAGGTCTAATGCTGGAGGTACTTCACTTTGCCCTTTTGATTGTGACTGTTGTTTTTAGTGAATTTTGAAAGAAATTGTTTGAGATTGAATGAATTATATCAGTTTTGTAATGAATTTGTAGTAGTATATGTCCGTTTCGAGGATGAAGTTTTGTTCTTTTTACTGACTGGTGTAAGCTGTAACAGTTTTATTTGAATGCATGAGGAATTTTGTTTATAGATGTGA</genome_strand>
        <mrna_strand>TTACTCTTCAATCTTCAAGTTTTTCTTCACGATTGTGCTGAATTTAGGTATAATTCCATAGTTTTCGCTTCTAGCAATGCCAAAAAAGAGTAATTCGAAGAAGCCTAAACCAGTGGAAGTAGCAGCAGCTGCTGTTGTAGAAAAGGAGAAACCAGTTTCTTCGTCTAAACCCAAAAAGCCCGGCAGTGAAATCGACGATATATTTGCCGGAAAAAAGAGGAAGAAACCGGAATTACAAGAAAAATCAAGCGGAGTTGCTGTTACAGAGCCGAAAAAGGCGAAGAAAAGCAAGGAAAATAGTGGTAGGATTCCGAAAGATAATGTGTTATCTGAGCCACCACGTCGGTCGAGGAAGAAAACGGCAGATGGGTTTACTTTATACACAGAAGAGGAGTTGGGTATTGGGAGGTCTAATGCTGGAGGTACTTCACTTTGCCCTTTTGATTGTGACTGTTGTTTTTAGTGAATTTTGAAAGAAATTGTTTGAGATTGAATGAATTATATCAGTTTTGTAATGAATTTGTAGTAGTATATGTCCGTTTCGAGGATGAAGTTTTGTTCTTTTTACTGACTGGTGTAAGCTGTAACAGTTTTATTTGAATGCATGAGGAATTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422972" ref_strand="-" ref_description="SGN-E422972 [STM-41-E18]">
      <seq>aagatagcagatgctgttggagcctttctcatgatggatatggctcacatcagtgggcttgttgccgcctctgtagttgctaatccatttgaatactgtgacattgttaccacaacaactcacaagtctctaagaggtcctagaggaggaatgatcttcttcaagaaagatcctgtcctaggcgttgatttggaatctgccatcaacaatgctgtttttcctggcttgcagggtggtccacataatcacacaattggaggactagctgtttgcttgaagcatgccaaatcacctgatttcaaggcttatcagaacaaggtggtctctaactgtagagctcttgcaagccggttaatggagttggggtacaagctggtatctggaggaactgacaatcatttggtcctagttgatctcaggccattgggtactgatggtgctagagtggagaaaatacttgacatggcatcaatcacgctcaataagaattcagtagccggtgataaaagtgcactagtgcctggtggtatacgcataggctcacctgcaatgacaacttgaggtttctcagagaaggaatttgttaccgttgcagacctcattaacgagggtgtgcagataacttttgaggccaagagcttagtttttggttttaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="35973" stop="33835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35673" g_stop="35548" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35547" i_stop="35370" i_length="178">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35369" g_stop="35265" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="231" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35264" i_stop="35108" i_length="157">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35107" g_stop="35021" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="318" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35020" i_stop="34951" i_length="70">
            <donor d_prob="0.131" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34950" g_stop="34843" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="426" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34842" i_stop="34447" i_length="396">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34446" g_stop="34374" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="499" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34373" i_stop="34295" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34294" g_stop="34135" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="659" r_length="160" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E422972" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422972" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35673" e_stop="35548"/>
          <exon e_start="35369" e_stop="35265"/>
          <exon e_start="35107" e_stop="35021"/>
          <exon e_start="34950" e_stop="34843"/>
          <exon e_start="34446" e_stop="34374"/>
          <exon e_start="34294" e_stop="34135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCACAAGGTATGATTTAAAATTCTTGGAATATTGTGCATAGCCATTCCAGCTCCTTCTACCCAGTGAAAAATAAAGTTAAAAAGAAAGTCACAGAAAAGACAAATGGAGAATGCAATGCAAAAATATTTTTGATGATTTTATTTCCATTGGCCTGATTAAGTTTAATGGCAATGCTTTTGTTCAGTCTCTAAGAGGTCCTAGAGGAGGAATGATCTTCTTCAAGAAAGATCCTGTCCTAGGCGTTGATTTGGAATCTGCCATCAACAATGCTGTTTTTCCTGGCTTGCAGGTCAGTTTCATTTTCTCACGACACTAATTGTTACTCTACACTTTTTTCTTTTGCTCCCTGGAATGTTAAAACCTATCAATGCCTGGACTATTGGCACTTTATCTGTATGTTGAATATTGTGGTGAGTTTGATGAGCAATAGCATGGTTTTTTTACAGGGTGGTCCACACAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGATTTCAAGGCTTATCAGAACAAGGCAAACATTTTACTGTCTTTTCACTAGATTGTGGCCATTTATGCGGGAAATATAATTTTTGTGTATGCAGGTGGTCTCTAACTGTAGAGCTCTTGCAAGCCGGTTAACGGAGTTGGGGTACAAGCTGGTCTCTGGAGGAACTGACAATCATTTGGTCCTAGTTGATCTTAGGCCCTTGGTACGTTAAGCATTTACTCTATTTCTTGTCTAGAGAAGAAAAACTCAACTAGAACATGCAAATGTACTGGTATTGCAATCGTAGTTAATGAACTACTATACAATAAGCACCATAGACTACAGTTTTGTTGACGATTTTTATTGAACAATTTCAAAATTTGGTGGTTACTGCGGAATTGAAGTGCAAGCGTATGAATTTTGGTAAATATTGGATAGAAAATATTATTTGGTTGATTAATGTATTCATATAGAAAGTCTAAAACAGGTCGTCAAACTCGGTTAAAGGATCCTTCTGGCTTTTACTTGTTAGAGTCTGTTTTTTACCAGCTATAAGCACCAACATGCAACCAACCTCGTCCTGTGAATTTTGATTAACCCGACTGCATATGCCAATTAGGGTACTGATGGTGCTAGAGTGGAGAAAATACTTGACATGGCATCAATCACGCTCAATAAGAATTCAGTAGCCGGTAAGTTTAGAAGCTTTAACCATTGTGATTTACTATCGACATCTATTATCTTGTCCTTACACCATCAATTAAACTTTAGGTGATAAAAGTGCACTAGTGCCTGGTGGTATACGCATAGGCTCACCTGCAATGACAACTCGAGGTTTCTCAGAGAAGGAATTTGTAACCGTTGCAGACCTTATTAACGAGGGTGTGCAGATAACTCTTGAGGCCAAGAACTTAGTCTCTGGTTCTAAACT</genome_strand>
        <mrna_strand>AAGATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATCAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCACAAG..................................................................................................................................................................................TCTCTAAGAGGTCCTAGAGGAGGAATGATCTTCTTCAAGAAAGATCCTGTCCTAGGCGTTGATTTGGAATCTGCCATCAACAATGCTGTTTTTCCTGGCTTGCAG.............................................................................................................................................................GGTGGTCCACATAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGATTTCAAGGCTTATCAGAACAAG......................................................................GTGGTCTCTAACTGTAGAGCTCTTGCAAGCCGGTTAATGGAGTTGGGGTACAAGCTGGTATCTGGAGGAACTGACAATCATTTGGTCCTAGTTGATCTCAGGCCATTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTACTGATGGTGCTAGAGTGGAGAAAATACTTGACATGGCATCAATCACGCTCAATAAGAATTCAGTAGCCG...............................................................................GTGATAAAAGTGCACTAGTGCCTGGTGGTATACGCATAGGCTCACCTGCAATGACAACTTGAGGTTTCTCAGAGAAGGAATTTGTTACCGTTGCAGACCTCATTAACGAGGGTGTGCAGATAACTTTTGAGGCCAAGAGCTTAGTTTTTGGTTTTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347645" ref_strand="+" ref_description="SGN-E347645 [cTOF-26-B12]">
      <seq>ttgcctcatgggggtcatttgtcccatggattcatgactcctaaaagacgagtttcaggcacatctatttactttgagtccatgccttaccgccttgatgaatcttcaggacttgttgattatgacatgcttgagaaaactgcaaccctttttcggccaaaacttattattgctggtgctagtgcatatccacgagattttgattatcctcgcatgagaaagatagcagatgctgttggagcctttctcatgatggatatggctcacattagtgggcttgttgccgcctctgtagttgctaatccatttgaatactgtgacattgttaccacaacaactcacaagtctctaagaggtcctagaggaggaatgatcttcttcaagaaagatcctgtcctaggcgttgatttggaatctgccatcaacaatgctgtttttcctggcttgcagggtggtccacacaatcacacaattggaggactagctgtttgcttgaagcatgccaaatcacctgatttcaaggcttatcagaacaaggtggtctctaactgtagagctcttgcaagccggttaacggagttggggtacaagctggtctctggaggaactgancatcatttggtcctagttgatcttaggccccttggtactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="36380" stop="34536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36080" g_stop="35972" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35971" i_stop="35896" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35895" g_stop="35783" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="222" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35782" i_stop="35671" i_length="112">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35670" g_stop="35548" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="345" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35547" i_stop="35370" i_length="178">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35369" g_stop="35265" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="450" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35264" i_stop="35108" i_length="157">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35107" g_stop="35021" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="537" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35020" i_stop="34951" i_length="70">
            <donor d_prob="0.131" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34950" g_stop="34843" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="645" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E347645" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36080" e_stop="35972"/>
          <exon e_start="35895" e_stop="35783"/>
          <exon e_start="35670" e_stop="35548"/>
          <exon e_start="35369" e_stop="35265"/>
          <exon e_start="35107" e_stop="35021"/>
          <exon e_start="34950" e_stop="34843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTCATGGGGGTCATTTGTCCCATGGATTCATGACTCCTAAAAGACGAGTTTCAGGCACATCTATTTACTTTGAGTCCATGCCTTACCGCCTTGATGAATCTTCAGGTACCACATGCCTATATTTGTAGATACATTAAGCTTTAACTATAATTGTAATCCAATTTTTGTTTTGACTTAACAGGACTTGTTGATTATGACATGCTTGAGAAAACTGCAACCCTTTTTCGGCCAAAACTTATTATTGCTGGTGCTAGTGCATATCCACGAGATTTTGATTATCCTCGCATGAGAAAGGTATAAAATATTTGGAGTTTGCTAGTTGGAGTTACTCTTTCATATTGATAATTCATCATATTGATATCTTATTTTCTGCATCTAATTATTTCTTTTACTATACGTCCGAAAGATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCACAAGGTATGATTTAAAATTCTTGGAATATTGTGCATAGCCATTCCAGCTCCTTCTACCCAGTGAAAAATAAAGTTAAAAAGAAAGTCACAGAAAAGACAAATGGAGAATGCAATGCAAAAATATTTTTGATGATTTTATTTCCATTGGCCTGATTAAGTTTAATGGCAATGCTTTTGTTCAGTCTCTAAGAGGTCCTAGAGGAGGAATGATCTTCTTCAAGAAAGATCCTGTCCTAGGCGTTGATTTGGAATCTGCCATCAACAATGCTGTTTTTCCTGGCTTGCAGGTCAGTTTCATTTTCTCACGACACTAATTGTTACTCTACACTTTTTTCTTTTGCTCCCTGGAATGTTAAAACCTATCAATGCCTGGACTATTGGCACTTTATCTGTATGTTGAATATTGTGGTGAGTTTGATGAGCAATAGCATGGTTTTTTTACAGGGTGGTCCACACAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGATTTCAAGGCTTATCAGAACAAGGCAAACATTTTACTGTCTTTTCACTAGATTGTGGCCATTTATGCGGGAAATATAATTTTTGTGTATGCAGGTGGTCTCTAACTGTAGAGCTCTTGCAAGCCGGTTAACGGAGTTGGGGTACAAGCTGGTCTCTGGAGGAACTGACAATCATTTGGTCCTAGTTGATCTTAGGCCCTTG</genome_strand>
        <mrna_strand>TTGCCTCATGGGGGTCATTTGTCCCATGGATTCATGACTCCTAAAAGACGAGTTTCAGGCACATCTATTTACTTTGAGTCCATGCCTTACCGCCTTGATGAATCTTCAG............................................................................GACTTGTTGATTATGACATGCTTGAGAAAACTGCAACCCTTTTTCGGCCAAAACTTATTATTGCTGGTGCTAGTGCATATCCACGAGATTTTGATTATCCTCGCATGAGAAAG................................................................................................................ATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCACAAG..................................................................................................................................................................................TCTCTAAGAGGTCCTAGAGGAGGAATGATCTTCTTCAAGAAAGATCCTGTCCTAGGCGTTGATTTGGAATCTGCCATCAACAATGCTGTTTTTCCTGGCTTGCAG.............................................................................................................................................................GGTGGTCCACACAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGATTTCAAGGCTTATCAGAACAAG......................................................................GTGGTCTCTAACTGTAGAGCTCTTGCAAGCCGGTTAACGGAGTTGGGGTACAAGCTGGTCTCTGGAGGAACTGANCATCATTTGGTCCTAGTTGATCTTAGGCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701406" ref_strand="+" ref_description="SGN-E701406 [FA15DE08]">
      <seq>gggatcggctttccctttaaagggtgaagtgaaacttaatggggtcagattatggtttgttaagccttgcaaagcctctcaacttgatgggagcttggtttcaggaaggcctccttcttctgtttctgttcctatcccagaaatgggaggtgctgggaacaactttgtagattatggattgggtgaagctgatcctgaagtccgtggtattattgacaaagagaaggaacgccaatttcgtagcttagagcttattgcctctgagaatttcacatctcgagcagtgatggaggcggtgggttcttgccttacaaacaaatactccgaaggactaccaggcaaaagatattatggtggaaacgagtacattgacgagttagaaatactctgtcaagagagggctttggcagcctttaacttagatgggaaacagtggggtgtcaatgttcaacccctatctggttctccagcaaattttgaagtctacacagcagttctcaatccacatgaccggattatgggattggacttgcctcatgggggtcatttgtcccatggattcatgactcctaaaagacgagtttcaggcacatctatttactttgagtccatgccttaccgccttgatgaatcttcaggacttgttgattatgacatgcttgagaaaactgcaaccctttttcggccaaaacttattattgctggtgctagtgcatatccacgagattttgattatcctcgcatgagaaagatagcagatgctgttggagcctttctcatgatggatatggctcacattagtgggcttgttgccgcctctgtagttgctaatccatttgaatactgtgacattgttaccacaacaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="38143" stop="35252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37843" g_stop="37695" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37694" i_stop="36740" i_length="955">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36739" g_stop="36544" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="345" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36543" i_stop="36343" i_length="201">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36342" g_stop="36168" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="520" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36090" i_length="78">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36089" g_stop="35972" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="638" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35971" i_stop="35896" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35895" g_stop="35783" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="751" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35782" i_stop="35671" i_length="112">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35670" g_stop="35552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="870" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E701406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37843" e_stop="37695"/>
          <exon e_start="36739" e_stop="36544"/>
          <exon e_start="36342" e_stop="36168"/>
          <exon e_start="36089" e_stop="35972"/>
          <exon e_start="35895" e_stop="35783"/>
          <exon e_start="35670" e_stop="35552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCGGCTTTCCCTTTAAAGGGTGAAGTGAAACTTAATGGGGTCAGATTATGGTTTGTTAAGCCTTGCAAAGCCTCTCAACTTGATGGGAGCTTGGTTTCAGGAAGGCCTCCTTCTTCTGTTTCTGTTCCTATCCCAGAAATGGGAGGTAATTTTTCAAACTTACGTTTTATTCCACGTGTACATACACATAAAACGATGCAGCAGATTCTTGGTTATAGACTTCTCCATTTTAGCGTCTTCTTGGCTTTTCTGTGTCCTCTAGTTTGTATACTACTACTAGTCTTTGATCTGTTTGTTCTTTTATATCCTGTGGGGTGTGAAATCGTTTTCTGGAGTTATTCAGTCTACATGTTTAAGTTATATTATAAACCATATTAGTTAATGCACATGTGAGAAGATTAGATACTATAATTGTCTAACTGCTATATATGCTAAAAGCTCTTGAAGCATTTTGACTAATGTGTAGTCGATTGGGATTTGGATGTCTCATCCTTACTCTGTTTTATGTGTTATGTTTGTTGTAGGGTTTGACTTATGTTAATTCTTTGCTCATAGTAGAGTCTTGACAATTATGATCCGACTTGGTGCACCTACAGCCCTCTGGCGTGACTTCTTAAATCACGTAACTCAAGAAATGTGGTACACATTGACATTCCCGGATTTGGGGTTTTGAATTAAGTCCTTGGTAGCCTACCAATTTACTGCATGGTCTGTGACTTTCCTTTAATTCATATCTACTATTGGTACATCTAAAGCCATCAGCTTGTGATCTTATAATCTTCTTGAAATCAACCAGGGCACTGACATTATTGTTAGAACTCAGAGAAGTTCTGAAACATTTTATTGTATGTCCCTTGTCTTCGTTGACGAAAATGAATGCATTCTTCTCTTATTTTGACAACGTTCCATGGTTCTCGTACTTAAATAGTGTTTCTCTTCCTTCTCTTTCCCATGTAAGGGTTGTGTTAGTCAAGCCACTTCTTGGCGCTTTTCATTTCCTCATCCTAGTGGTATGTGATAGTTGAAGTTGATGAATTTGAATTATGCTTGCTAGCTAATTCTGTTACTCTGTTACTAAAAGATGTCCATTGCATTTTTAGGTGCTGGGAACAACTTTGTAGATTATGGATTGGGTGAAGCTGATCCTGAAGTCCGTGGTATTATTGACAAAGAGAAGGAACGCCAATTTCGTAGCTTAGAGCTTATTGCCTCTGAGAATTTCACATCTCGAGCAGTGATGGAGGCGGTGGGTTCTTGCCTTACAAACAAATACTCCGAAGGACTACCAGGCAAAAGGTGACTTTTATCCCTATGAATAAAAAAATGAAAAATAAGCATTTTCACATTAATTTTTCTTTATTATTTAATTTTTTGATTACTTTGTTTGATACGAAATGTGCATCTCTTCCTGGTAGCAAACTTGTTCTTTTTTTCCTTTTGCGTAGCTTATTTAACAGTGTTCTTCCTTTGTAATTGTAAATAAATACCCCATATCAGATATTATGGTGGAAACGAGTACATTGACGAGTTAGAAATACTCTGTCAAGAGAGGGCTTTGGCAGCCTTTAACTTAGATGGGAAACAGTGGGGTGTCAATGTTCAACCCCTATCTGGTTCTCCAGCAAATTTTGAAGTCTACACAGCAGTTCTCAATCCACATGACCGGATTATGGTTAGTTGTAAGCAGTCTCTTCCTGTTGGTCTTCTAGATTACATGGATTAATATTCATCTTTAATATTTATCACTCAGGGATTGGACTTGCCTCATGGGGGTCATTTGTCCCATGGATTCATGACTCCTAAAAGACGAGTTTCAGGCACATCTATTTACTTTGAGTCCATGCCTTACCGCCTTGATGAATCTTCAGGTACCACATGCCTATATTTGTAGATACATTAAGCTTTAACTATAATTGTAATCCAATTTTTGTTTTGACTTAACAGGACTTGTTGATTATGACATGCTTGAGAAAACTGCAACCCTTTTTCGGCCAAAACTTATTATTGCTGGTGCTAGTGCATATCCACGAGATTTTGATTATCCTCGCATGAGAAAGGTATAAAATATTTGGAGTTTGCTAGTTGGAGTTACTCTTTCATATTGATAATTCATCATATTGATATCTTATTTTCTGCATCTAATTATTTCTTTTACTATACGTCCGAAAGATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCA</genome_strand>
        <mrna_strand>GGGATCGGCTTTCCCTTTAAAGGGTGAAGTGAAACTTAATGGGGTCAGATTATGGTTTGTTAAGCCTTGCAAAGCCTCTCAACTTGATGGGAGCTTGGTTTCAGGAAGGCCTCCTTCTTCTGTTTCTGTTCCTATCCCAGAAATGGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGGAACAACTTTGTAGATTATGGATTGGGTGAAGCTGATCCTGAAGTCCGTGGTATTATTGACAAAGAGAAGGAACGCCAATTTCGTAGCTTAGAGCTTATTGCCTCTGAGAATTTCACATCTCGAGCAGTGATGGAGGCGGTGGGTTCTTGCCTTACAAACAAATACTCCGAAGGACTACCAGGCAAAAG.........................................................................................................................................................................................................ATATTATGGTGGAAACGAGTACATTGACGAGTTAGAAATACTCTGTCAAGAGAGGGCTTTGGCAGCCTTTAACTTAGATGGGAAACAGTGGGGTGTCAATGTTCAACCCCTATCTGGTTCTCCAGCAAATTTTGAAGTCTACACAGCAGTTCTCAATCCACATGACCGGATTATG..............................................................................GGATTGGACTTGCCTCATGGGGGTCATTTGTCCCATGGATTCATGACTCCTAAAAGACGAGTTTCAGGCACATCTATTTACTTTGAGTCCATGCCTTACCGCCTTGATGAATCTTCAG............................................................................GACTTGTTGATTATGACATGCTTGAGAAAACTGCAACCCTTTTTCGGCCAAAACTTATTATTGCTGGTGCTAGTGCATATCCACGAGATTTTGATTATCCTCGCATGAGAAAG................................................................................................................ATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460520" ref_strand="+" ref_description="SGN-E460520 [cPRO-31-F11]">
      <seq>gttggactcaattaagcaggcaatccttctattcgtcaatgccaagttcactattaatccagatcaccgttttgcttttgctactcttggcaaatccgcttcttgggttcggaaagagtttactagtgacattgactcagtagtttctgcatgccggggtattgcagtagattcaccttgtggccatgcagaccttactcaactatttcgagtggcagctcatgaaggaaaaaagacacgtgcacaaaatcggatactcagggtggtacttctatattgtaggtcatctataccaccacagcatcaatggcctgctacccaaaagctcttcactttggacgtagtttaccttcatgacaagcccggacctgacaattgccctcaaaaggtgtatgatgcccttgtcgaggccctggaacatgtcagtgaatacgagggttacatatttgagagtggtcaggggcttactcgtgtcctattccgtcacatgtgtacacttctttcccaccctcagcaacgttgcgtgcaagatgaccttgacattncccagtcccttacaaagaagtcagctacctctgactcggcaccaactgatgaaaatgctgttgntgtctctagccaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="39423" stop="44063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39723" g_stop="39828" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39829" i_stop="41078" i_length="1250">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.867" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41079" g_stop="41237" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="265" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41238" i_stop="43403" i_length="2166">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43404" g_stop="43763" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="625" r_length="360" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E460520" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39723" e_stop="39828"/>
          <exon e_start="41079" e_stop="41237"/>
          <exon e_start="43404" e_stop="43763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGACTCAATTAAGCAGGCAATCCTTCTATTCGTCAATGCAAAGCTCACTATTAATCCAGATCACCGTTTTGCTTTTGCTGCTCTTGGCAAATCTGCCTCTTGGGTAAATTTTTTTTTTTTTTTTTTGGCAATTTCTTCAAGCTGATTGAAGTTTGAATTGGGTAATACTCATAATATATGTAGAATTTCAGATATGTAATTGTGGAATAATTGATTTTGCTATCCTTCCCATAATGTGATAATAGCCACTCTCATTTCAATTTGTTGATAGGATTTTGACTTGATTCATAGTTTAAGAAAGTAAAATATACTTTTAAATGTTATGGTTTGACATGTAATGTAGCAAAATATCCTCTAATCTTGTGGTTTTAGACGTGTCAATAGAAATTAAAGAGTTGAAAAGTATTCTTTTCTGAAATGGATTAAAAAGGAAAGGAAGGCAGACAAACTAGAACGGAAGGAGTATTAGTTTTTTCGGTTGCATAATTAGGCAGACCTTTTTCTTTGTTCTGGCATAATATGAGGCAGTTATGATACTTTTTTGTTTCTTCAAATGCTTGCTAACATGAGGCATTCTGATATGTGTATAAAGAATTAGTTCTTGCTAATATCATGCAAACTAAGTCTAGTATTTAAGTGGAGGGGTAGAGGGACATCTCCATTATCATCGAGTATCGAAGGTGTATCCCCTTCTCGTCATACCTCTTGAGTTAGAAATGCTTCTTGAGTTGTTAGCCATCCAAATCAAGCAACTTTAGATGGTGCATTAGTCTTCTAAAGTATTTTCTGTGGCCACACTCTTAAGCTTGTAATGGAGTAGTCTTCCAGTGTTATTAAAGAAATTCGATGCAGTTAGTGATGGGGATACTTCAGATACTGTTTCACACGTTACTCTCATCACTATTCTATTGTTATCGTACAACTTGTCAAACTTAATAATTGCAAGCATGAAACGATTTGTTGTCACTGGTAGGAATACTTGCTTTTTAAGATGTAGAATCCTGCTTCTTAGCATGAAATTGGTTTGACGGACTTTGTAAAAGTGTATGAGTGGTTTATATATCTCCTTAACTTTGATGCATTTTCTTCTCACTTTCCCCCTTCGCTATTATGATGTATTCCTGTTTGACGAATGATTTCAAACATAAACTTATGCTGCTTTTATTGATGACTTTCAAGAGCTGCTCAGCTATATATTTATGTTCTTATTGTAGTATAAGTTCTTTGAAACTTTTATGGCCTGCTTAAGTTATCTTATCAAATCTTATCTTCCTGTTCCAATTTACTGGTGGGGATATAATTGGACGTAGAGTATTGAAATTGACTTGTCTTCTCAAATTTCTATTGATGAAGGTTTGTAAAGAGTTTACTAGTGACATTGACTCAGTAGTTTCTGCATGCCGGGGTATTGCAGTAGATTCACCTTGTGGCCATGCAGACCTTACTCAACTATTTCGAGTGGCAGCTCATGAAGCAAAAAAGACACGTGCACAAAATCGGATACTCAGGGTGGTAAGGATGTGATTAGCAATGTGTCTTTTCATCTGACTTTAGTACATCTGGTGCTGAAATTTTTTATTGAGAAGGTTAACATTTGGTTTGCTAAGAAAATTATAGAAGCTATATTGCATATGAATGACGCATGGTAAATCAGCTACTCAGTTTTGGTGCAATGTAATGAGCAGATGTGTTCTATTTCTAGAATTATCTCTTAGCTATTCGTCTGAGCACGACTACTCAAAAAAATGGTTTTGCTTCATCATGTGGTTGATAGTGCTATAGCAATAAGTAATGGTATCTGAGTTGTTAAGTGAAATACAACTTTGATTTTGTGTGTCTCAACCAATATTGAGTTTAATGTTGCAGAGAACAAGCACCCATATGAGTGACTATTCTTGATGCACTTTCATCTTAGCAAACAAGATATTAAGAACACAGCTAGACCAAATATCCTAGCACCAATGTGAGAATGGGGAAAATAATTCTAACTTTGGTTACGTATTTTGGGTTCTTTTTCTGAATAAAATGAAAAGATAGTTTCTTAGCATAATCCTTAGTTTGTTATCAGAAAAGATTGTAGATCCAACTTTAGGACGAAAGGAGATCAACTACTTGACATACTTGCATTTTACAATTAAATATGTAGTTTTCTTTTGATGAAGTTAATAATGTCGTTTTCTTCTTTCCTTTATTTGCTTTATTTCATGCCACTTATACATGCTATTGTTGGAAAGAAACACTTCTTCTCTAGTTGATTTAGTCGGCCTAAATTAGACTAGATTACCAAATTAAGGGATTTATTATATTTGTTTAGTCATTCATCTTTTTCATTATCAGTCTTTGATTCAGTAGCAGTGAAATTAACTATTATGATATTAGTGCGGGGTGCTTATGTATATGTAAAAATAAAAGATGTGTTTTGTTTGTTTACACATCTCATAGCCACCTCAAACGAGATTTTCATTTCGGAAAACTTGCTGACTTTAAGTTTACAAACATATTGCTACTAGAAAAAATTTAAATAGCTTCCAGGTGGCATTAGCTATATCTGGACTGGGTCATGGGCTGCCAAAGCGTAGAGAAACAACTTCTATAATGAAAAGATATTAAGATGAAAAAGAATGATATCTAATAGTGGGTTTTAGGTAGTTGTTTATCACGAGGAACAGATGCAGAAAAGCTACAGAAGAAGGGAAATAAACTTCTTGAATAATCATATGAATCTGAGAAAGATCACACCAGTTTGAATTGATGTTAAGTTGGACGTGAGGTGTATCTGATAAGGATAACATATGGTGTTTGTCAAGGCAAATGAAGGATGCCACCAAGAGTAGGTTCAGGTGTCTATATGCATATAAGTATATCATCTTCTACTTCCTTTTGAAAACTAAAAGGTCTTTTTACTTGTATCAAGGTCATATTGCAAGCATAATCACCAGCTGTCACCTCCTTCAACTATCAATTAGTTTTATTGACTGAGAAGTTCTAGTTTATACAGGAAACCTCCAACTACGACAGTGTCAAATCAGAAGTGTTTTCTTTTGATTATTTGAACAATGCTTACTGGTTATGTGTTTTTAAATTACATCTCAGTTGTGTGTGCAGTGCAGGTCCTTTTATTCTTTCATGTCTACGGCACCATGCCATGTGCAGGTAGTAATAAGTCTGTTACAATAACAACATTTAAAAGTACTGCATCAATCAGTTGCAAAAGATCTGAAATTGCCTCAAAAGATAGCCACATAGAAGCTAAGTAAATCTTTTGAATGTGAGACTCTGAGAGTGCATAGAAGATCTTCCTTTCTTTTCCTCTTATCAGTGAGGGGTTTTTATGTTTCAGTGTCTTGTGGGATCTAAAATGGGTTTTTACCTTCATGAAATTCAGTTATTCTCATTTCCTTTGATCTACTGGTAAATTTTGAGTTTGAACCATTCTCATTCCTCACTAGATGCTCTCTCTGAATGATTACAACTACAGCTCAGCCCCAAACAAGTTGAAGGTCCGCAATATGAATACTCACTGATCGTGTTTGCTCATTTAAGTGTACCCTAAGCCAATATTATGCAAATGATTATTTGATACATTTTCATAAACATCTAATGCTTGCAAATTTATTCTCTCTGTACAAATTGGTTGCTAGCAAGTGTTAATTAACATGTATTCTCTTTATTATGCAGGTACTTCTATATTGTAGGTCATCTATACCACCACAGCATCAATGGCCTGCTACCCAAAAGCTCTTCACTTTGGATGTAGTTTACCTTCATGACAAACCTGGACCTGACAATTGCCCTCAAAAGGTTTATGATGCCCTTGTCGAAGCCCTGGAACATGTCAGTGAATACGAGGGTTACATATTTGAGAGTGGTCAGGGGCTTACTCGTGTCCTATTCCGTCATATGTGTACACTTCTTTCCCACCCTCAGCAACGTTGCGTGCAAGATGACCTTGACATTCCCAAGTCCCTTACAAAGAAGTCAGCTACCTCTGACTCGGCACCAACTGATGAAAATGCTGTTGTTGTCTCTAGCCAATGA</genome_strand>
        <mrna_strand>GTTGGACTCAATTAAGCAGGCAATCCTTCTATTCGTCAATGCCAAGTTCACTATTAATCCAGATCACCGTTTTGCTTTTGCTACTCTTGGCAAATCCGCTTCTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGAAAGAGTTTACTAGTGACATTGACTCAGTAGTTTCTGCATGCCGGGGTATTGCAGTAGATTCACCTTGTGGCCATGCAGACCTTACTCAACTATTTCGAGTGGCAGCTCATGAAGGAAAAAAGACACGTGCACAAAATCGGATACTCAGGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCTATATTGTAGGTCATCTATACCACCACAGCATCAATGGCCTGCTACCCAAAAGCTCTTCACTTTGGACGTAGTTTACCTTCATGACAAGCCCGGACCTGACAATTGCCCTCAAAAGGTGTATGATGCCCTTGTCGAGGCCCTGGAACATGTCAGTGAATACGAGGGTTACATATTTGAGAGTGGTCAGGGGCTTACTCGTGTCCTATTCCGTCACATGTGTACACTTCTTTCCCACCCTCAGCAACGTTGCGTGCAAGATGACCTTGACATTNCCCAGTCCCTTACAAAGAAGTCAGCTACCTCTGACTCGGCACCAACTGATGAAAATGCTGTTGNTGTCTCTAGCCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316934" ref_strand="-" ref_description="SGN-E316934 [cTOA-27-J21]">
      <seq>aattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45821" stop="39524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45521" g_stop="45453" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="276" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44353" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="669" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44352" i_stop="43931" i_length="422">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43930" g_stop="43891" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="709" r_length="40" r_score="0.475"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E316934" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316934" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45521" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44353"/>
          <exon e_start="43930" e_stop="43891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACAGTAAGTCCTCTATACATTGGGATTTTTCCCTCGAATAAATTAAAGGGAACTCATTAATCAAAGTCATATTGCGAAAACAAAGCATCTAACTAGTAGCTGTCATAGCTTGAATCCGTGACCTTTTAAGTTACACAAAGACAATTTTACCATTGCTTCAGATATGCCATGAATAATAAGCATAAAGATATCATAATTCATATGTAAGAATGTCACCAGGGCACGTTATTTGATACTTCAACCATATGAAACTTCAAAAAGGATTAAAGGCCTTGAAAGAACAGTAGATCAGATGATTTTGCAATGGAAAAAAAGAAGAGAGCTCATCAACACTGATCCATTTGTGTTCTTAGACTGACTTGAAACTTCACAACAAAGTGATTACTATACAGGAAAAAAGACGGAGGTGGAAAGAAAGAGGGGAAGGGTGGG</genome_strand>
        <mrna_strand>AATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229905" ref_strand="+" ref_description="SGN-E229905 [cLEL-33-K10](-)">
      <seq>catttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45038" stop="39536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44738" g_stop="44320" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44319" i_stop="43931" i_length="389">
            <donor d_prob="0.855" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43930" g_stop="43923" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="427" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E229905" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44738" e_stop="44320"/>
          <exon e_start="43930" e_stop="43923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACAGTAAGTCCTCTATACATTGGGATTTTTCCCTCGAATAAATTAAAGGGAACTCATTAATCAAAGTCATATTGCGAAAACAAAGCATCTAACTAGTAGCTGTCATAGCTTGAATCCGTGACCTTTTAAGTTACACAAAGACAATTTTACCATTGCTTCAGATATGCCATGAATAATAAGCATAAAGATATCATAATTCATATGTAAGAATGTCACCAGGGCACGTTATTTGATACTTCAACCATATGAAACTTCAAAAAGGATTAAAGGCCTTGAAAGAACAGTAGATCAGATGATTTTGCAATGGAAAAAAAGAAGAGAGCTCATCAACACTGATCCATTTGTGTTCTTAGACTGACTTGAAACTTCACAACAAAGTGATTACTATACAGGAAAAAAG</genome_strand>
        <mrna_strand>CATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230259" ref_strand="+" ref_description="SGN-E230259 [cLEL-33-K10](-)">
      <seq>aatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45008" stop="39536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44708" g_stop="44320" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44319" i_stop="43931" i_length="389">
            <donor d_prob="0.855" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43930" g_stop="43923" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="397" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E230259" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44708" e_stop="44320"/>
          <exon e_start="43930" e_stop="43923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACAGTAAGTCCTCTATACATTGGGATTTTTCCCTCGAATAAATTAAAGGGAACTCATTAATCAAAGTCATATTGCGAAAACAAAGCATCTAACTAGTAGCTGTCATAGCTTGAATCCGTGACCTTTTAAGTTACACAAAGACAATTTTACCATTGCTTCAGATATGCCATGAATAATAAGCATAAAGATATCATAATTCATATGTAAGAATGTCACCAGGGCACGTTATTTGATACTTCAACCATATGAAACTTCAAAAAGGATTAAAGGCCTTGAAAGAACAGTAGATCAGATGATTTTGCAATGGAAAAAAAGAAGAGAGCTCATCAACACTGATCCATTTGTGTTCTTAGACTGACTTGAAACTTCACAACAAAGTGATTACTATACAGGAAAAAAG</genome_strand>
        <mrna_strand>AATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258910" ref_strand="+" ref_description="SGN-E258910 [cLEG-41-M20]">
      <seq>ttttttttacttgcaatgagaaatgtgctttcaaatataatcaaagatgataagtcgtgcttgttcagctgtatttacagagcaccaatttacaaacattacgtgaatcctgataatcaataatagtagacttcagtaataacaggatcaaattgcaatttacaaataggacatgaaatgacactgataacagcaattattattattaccagcatcaaagtgagaaaccgcacagtccatggcgttttacgcactaaagcccctgtggagggaactccaaatattggaagggatgctaggacaagcttgtgctgatgcctccaccatctgctccatctgaattccagcattgcagatattggcaatggaacgcatgtgtttcattccatattgggataacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="44020" stop="45019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44317" g_stop="44719" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E258910" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44317" e_stop="44719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTTTACTTGCAATGAGAAATGTGCTTTCAAATATAATCAAAGATGATAAGTCGTGCTTGTTCAGCTGTATTTACAGAGCACCAATTTACAAACATTACGTGAATCCTGATAATCAATAATAGTAGACTTCAGTAATAACAGGATCAAATTGCAATTTACAAATAGGACATGAAATGACACTGATAACAGCAATTATTATTATTACCAGCATCAAAGTGAGAAACCGCACAGTCCATGGCGTTTTACGCACTAAAGCCCCTGTGGAGGGAACTCCAAATATTGGAAGGGATGCTAGGACAAGCTTGTGCTGATGCCTCCACCATCTGCTCCATCTGAATTCCAGCATTGCAGATATTGGCAATGGAACGCATGTGTTTCATTCCATATTGGGATAACGAT</genome_strand>
        <mrna_strand>TTTTTTTTACTTGCAATGAGAAATGTGCTTTCAAATATAATCAAAGATGATAAGTCGTGCTTGTTCAGCTGTATTTACAGAGCACCAATTTACAAACATTACGTGAATCCTGATAATCAATAATAGTAGACTTCAGTAATAACAGGATCAAATTGCAATTTACAAATAGGACATGAAATGACACTGATAACAGCAATTATTATTATTACCAGCATCAAAGTGAGAAACCGCACAGTCCATGGCGTTTTACGCACTAAAGCCCCTGTGGAGGGAACTCCAAATATTGGAAGGGATGCTAGGACAAGCTTGTGCTGATGCCTCCACCATCTGCTCCATCTGAATTCCAGCATTGCAGATATTGGCAATGGAACGCATGTGTTTCATTCCATATTGGGATAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261061" ref_strand="-" ref_description="SGN-E261061 [cLEG-55-N6]">
      <seq>gcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgcaagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45809" stop="44020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45509" g_stop="45453" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="264" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44320" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="690" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E261061" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261061" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45509" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA</genome_strand>
        <mrna_strand>GCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343316" ref_strand="+" ref_description="SGN-E343316 [cTOF-17-F24]">
      <seq>gcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgcaagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45809" stop="44016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45509" g_stop="45453" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="264" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44320" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="690" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E343316" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45509" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA</genome_strand>
        <mrna_strand>GCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368806" ref_strand="-" ref_description="SGN-E368806 [TUS-26-G19]">
      <seq>aagttccgcaaggctcctaaaggctctgctcggaaagttaaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgcaagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45345" stop="44020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45046" g_stop="44837" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44320" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="636" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E368806" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368806" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45046" e_stop="44837"/>
          <exon e_start="44745" e_stop="44320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA</genome_strand>
        <mrna_strand>AAGTTCCGCAAGGCTCCTAAAGGCTCTGCTCGGAAAGTTAAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353921" ref_strand="+" ref_description="SGN-E353921 [cTOS-10-P15]">
      <seq>tcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgcaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45302" stop="44016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45002" g_stop="44837" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44320" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="592" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E353921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45002" e_stop="44837"/>
          <exon e_start="44745" e_stop="44320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA</genome_strand>
        <mrna_strand>TCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577590" ref_strand="-" ref_description="SGN-E577590 [LE15AD12]">
      <seq>aaatggaaatactgcctatggttcccatgtcatgcaattgggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattcctngttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45945" stop="44027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45645" g_stop="45453" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="400" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44327" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="819" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E577590" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577590" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45645" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAA</genome_strand>
        <mrna_strand>AAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTGGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTNGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545613" ref_strand="+" ref_description="SGN-E545613 [TUS-68-I21](-)">
      <seq>ttgatgtttgggcctgccttaaatcttatgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgacttatcatctttgattatatttgaaagcacatttctcattgcaagtcctttttagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45165" stop="44025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44865" g_stop="44837" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44327" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="448" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E545613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44865" e_stop="44837"/>
          <exon e_start="44745" e_stop="44327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAA</genome_strand>
        <mrna_strand>TTGATGTTTGGGCCTGCCTTAAATCTTAT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348361" ref_strand="+" ref_description="SGN-E348361 [cTOF-27-G3]">
      <seq>ttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgtaaattggtgctctgtaaatacagctgaacaagcacgactttatcatcttgattatatttgaaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45343" stop="44040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44340" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="613" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E348361" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGAC-TTATCATCTTTGATTATATTTGAAAGCACA</genome_strand>
        <mrna_strand>TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTTATCATC-TTGATTATATTTGAAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573329" ref_strand="-" ref_description="SGN-E573329 [32623]">
      <seq>actacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcattgaagctatgtcacacagaatgcacctagatgagcgtattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgctggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcacactgtggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgtaatgctggagttcagatggagcagatggtggaggcatcagtacaagcttgtcctagcatcccctccaatacttggagttccctccacaggggctttagtgcgtaaacgccatggaatgtgcagtttctcactttgatgctggtaataataatagttgctgttatcagtgtcatttcgtgtcttatttgcaaattgcaatttgatcctggtattattgaagtctaccattattggtaatcagatttcatgtattgtttgtaaattggtgctctgtaaatacagctgaaaaagcacaacttgtcgtctttattatatttgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45841" stop="44043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45541" g_stop="45453" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="296" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44343" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="697" r_length="401" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E573329" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573329" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45541" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGC</genome_strand>
        <mrna_strand>ACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCATTGAAGCTATGTCACACAGAATGCACCTAGATGAGCGTATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCTGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCACACTGTGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGTAATGCTGGAGTTCAGATGGAGCAGATGGTGGAGGCATCAGTACAAGCTTGTCCTAGCATCCCCTCCAATACTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGT-AAACGCCATGGAATGTGCAGTTTCTCACTTTGATGCTGGTAATAATAATAGTTGCTGTTATCAGTGTCATTTCGTGTCTTATTTGCAAATTGCAATTTGATCCTGGTATTATTGAAGTCTACCATTATTGGTAATCAGATTTCATGTATTGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAAAAAGCACAACTTGTCGTCTTT-ATTATATTTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354269" ref_strand="+" ref_description="SGN-E354269 [cTOS-16-L13]">
      <seq>agatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45362" stop="44108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44408" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="570" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E354269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGT</genome_strand>
        <mrna_strand>TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349676" ref_strand="+" ref_description="SGN-E349676 [cTOS-3-K22]">
      <seq>aaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45216" stop="44111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44916" g_stop="44837" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44410" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="416" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="429"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E349676" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44916" e_stop="44837"/>
          <exon e_start="44745" e_stop="44410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTT</genome_strand>
        <mrna_strand>AAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352483" ref_strand="+" ref_description="SGN-E352483 [cTOS-9-M1]">
      <seq>aaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgattatcaggattcacgtaatggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45216" stop="44111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44916" g_stop="44837" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44414" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="412" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="429"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E352483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44916" e_stop="44837"/>
          <exon e_start="44745" e_stop="44414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAAT</genome_strand>
        <mrna_strand>AAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578142" ref_strand="+" ref_description="SGN-E578142 [LE08EF12]">
      <seq>gaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctgttatcagtgtcatttcatgtcctatttgtaaattgcaatttgatcctgttattactgaagtctactattattgntnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45849" stop="44130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45550" g_stop="45453" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="305" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44422" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="629" r_length="324" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E578142" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45550" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATT</genome_strand>
        <mrna_strand>GAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGNTNAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611057" ref_strand="+" ref_description="SGN-E611057 [60803]">
      <seq>atgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtaaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgagcgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtccagaggtgctgaagcatgttcgatctgctggtctgcctcttgttgatgattgggcctgccttaaatcctttgtaagaacatttgagtcacactgtggatcgttatctcaatatggaatgaaacacatgcgttccattgccaatatctgtaatgctggaattcagatggagcagatggtggaggcatcagtacaagcttgtcctagcatcccctccaatacttggagttccctccacaggggctttagtgcgtaaacgccatggaatgtgcagtttcgcactttgatgctggttaataataatagttgctgttatcagtgtcatttcggtgtcctatttgcaaattgcaatttgatcctgggtattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45847" stop="44159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45547" g_stop="45453" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="302" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44450" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="600" r_length="298" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E611057" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45547" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGG-TAATAATAATAATTGCTGTTATCAGTGTCATTTC-ATGTCCTATTTGTAAATTGCAATTTGATCCT-GTTATTACTG</genome_strand>
        <mrna_strand>ATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTAAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAGCGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCAGAGGTGCTGAAGCATGTTCGATCTGCTGGTCTGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCCTTT...........................................................................................GTAAGAACATTTGAGTCACACTGTGGATCGTTATCTCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGTAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGTACAAGCTTGTCCTAGCATCCCCTCCAATACTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGT-AAACGCCATGGAATGTGCAGTTTCGCACTTTGATGCTGGTTAATAATAATAGTTGCTGTTATCAGTGTCATTTCGGTGTCCTATTTGCAAATTGCAATTTGATCCTGGGTATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729488" ref_strand="+" ref_description="SGN-E729488 [LA21AH07]">
      <seq>caaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaattctgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgctggtaataataataattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46729" stop="44207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46429" g_stop="46315" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="164" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="374" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="581" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44745" g_stop="44507" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="820" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E729488" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46429" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTG</genome_strand>
        <mrna_strand>CAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATTCTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293639" ref_strand="+" ref_description="SGN-E293639 [cLET-15-P8]">
      <seq>gcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgcgcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctccacaggggctttagtgcgtaaaacgccatggactgtgcggtttctcactttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45851" stop="44227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45551" g_stop="45453" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="306" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44745" g_stop="44527" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="525" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E293639" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45551" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCT</genome_strand>
        <mrna_strand>GCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGCGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347019" ref_strand="+" ref_description="SGN-E347019 [cTOF-25-K10]">
      <seq>gagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttccctcccagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46793" stop="44276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46493" g_stop="46315" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="228" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45461" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="430" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45460" i_stop="44928" i_length="533">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44927" g_stop="44837" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="521" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44745" g_stop="44576" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="690" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E347019" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46493" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45461"/>
          <exon e_start="44927" e_stop="44837"/>
          <exon e_start="44745" e_stop="44576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGG</genome_strand>
        <mrna_strand>GAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCC-CAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368805" ref_strand="-" ref_description="SGN-E368805 [TUS-26-G19](-)">
      <seq>ctagttctcttcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattcagatggagcagatggtggaggcatcagcacaagcttgtcctagcatcccttccaatatttggagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46683" stop="44287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46393" g_stop="46315" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="128" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="338" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="545" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44745" g_stop="44587" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="704" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E368805" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368805" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46393" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCC</genome_strand>
        <mrna_strand>CTAGTTCTCTTCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272606" ref_strand="+" ref_description="SGN-E272606 [cLEM-21-J17]">
      <seq>tttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgactgcgggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggnaattcagatggagcagatgggtggaggcatcagcacaagcttgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46778" stop="44314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46478" g_stop="46315" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="213" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="423" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="630" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44745" g_stop="44614" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="764" r_length="134" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E272606" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46478" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGC-GGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGG-AATTCAGATGGAGCAGAT-GGTGGAGGCATCAGCACAAGCTTGTCCT</genome_strand>
        <mrna_strand>TTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCG-ACTGCGGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGNAATTCAGATGGAGCAGATGGGTGGAGGCATCAGCACAAGCTTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290835" ref_strand="+" ref_description="SGN-E290835 [cLET-10-I24]">
      <seq>cacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgcgttccattgccaatatctgcaatgctggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46233" stop="44355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45933" g_stop="45892" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="252" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="459" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44745" g_stop="44655" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="550" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E290835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45933" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
          <exon e_start="44745" e_stop="44655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTC</genome_strand>
        <mrna_strand>CACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251901" ref_strand="+" ref_description="SGN-E251901 [cLEG-14-E1]">
      <seq>tttaaacaatatctttgcaccatcttgccaccattgatggtttcataaccatattaatgtggtatagctggtttccaaaaagacactaacattacatttatgaatggtagcaatgctaaacaggcgggtaacttgtgctgagctgcctgagttatttgtagtaaggccacatgttgtaattcgcgggtctttatgtgtttatgtattaattggcttgtgcctctgatgtgaaatgccttgttattgattatctattcttcctcaatgctggcagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaaaaggtcctgaggtgctgaagcatgttcgatctgccggtcatcctcttgtagatgattgggcctgccttaaatcttttgtaagaacatttgagtcgcactgcggatcgttatcccaatatggaatgaaacacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45616" stop="44388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45316" g_stop="44837" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44745" g_stop="44688" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="539" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E251901" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45316" e_stop="44837"/>
          <exon e_start="44745" e_stop="44688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAA-GCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTTGTAAGCACCTCATAGAACTCTTAATTGTTAAGATTTGGTTCATCATCGTAGTTTGACAATTGTCTTTTTGCAACTTCTATCATATCTGCAGGTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGC</genome_strand>
        <mrna_strand>TTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTGAGCTGCCTGAGTTATTTGTAGTAAGGCCACATGTTGTAATTCGCGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTGTTATTGATTATCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCCGGTCATCCTCTTGTAGATGATTGGGCCTGCCTTAAATCTTTT...........................................................................................GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451239" ref_strand="+" ref_description="SGN-E451239 [cSTS-12-K23]">
      <seq>aaaagcttggtactgtacattgaagcttgtgagtccggaagtatatttgaaggacttcttcctaagggtctaaatatttatgccacaacagcttcaaatgctgaagagagcagctggggaacctattgtcctggagaatatcctagtcctccccctgaatatgagacctgtctgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaatttgcggactgaaaatttgaggcagcagtatcacctggtcaaaaagagaactgctaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtcaacncagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcattgaagctatgtcacacagaatgcacctagatgagcgtattgcccttgttggtaagcttctgtttggaattcaaaaagtcctgaggtgctgaaagcatgttcgatctgctggtcagcctcttgttgatgattgggcctgccttnaatcttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46815" stop="44534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46622" g_stop="46614" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="209" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="258" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="469" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45043" g_stop="44837" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="676" r_length="207" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E451239" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46622" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAAC-CAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTG-AAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT</genome_strand>
        <mrna_strand>AAAAGCTTG...................................................................................................GTACTGTACATTGAAGCTTGTGAGTCCGGAAGTATATTTGAAGGACTTCTTCCTAAGGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAGAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCCCCTGAATATGAGACCTGTCTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTATCACCTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCTAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTCAACNCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCATTGAAGCTATGTCACACAGAATGCACCTAGATGAGCGTATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAA-GTCCTGAGGTGCTGAAAGCATGTTCGATCTGCTGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTNAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414647" ref_strand="+" ref_description="SGN-E414647 [STM-19-L10]">
      <seq>aaagaagcatgctgctgggacatataaaagcttggtactgtacattgaagcttgtgagtccggaagtatatttgaaggacttcttcctaagggtctaaatatttatgccacaacagcttcaaatgctgaagagagcagctggggaacctattgtcccggagaatatcctagtcctcctcctgaatatgagacctgtctgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaatttgcggactgaaaatttgaggcagcagtatcacctggtcaaaaagagaacttctaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtaaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgagcgcattgcccttgttggtaagcttctgtttggaattcaaaaggtccagaagtgctgaagcatgttcgatctgctggtctgcctcttgttgatgattgggcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46947" stop="44548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46647" g_stop="46614" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="234" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="283" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="493" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45043" g_stop="44848" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="688" r_length="195" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E414647" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46647" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCC</genome_strand>
        <mrna_strand>AAAGAAGCATGCTGCTGGGACATATAAAAGCTTG...................................................................................................GTACTGTACATTGAAGCTTGTGAGTCCGGAAGTATATTTGAAGGACTTCTTCCTAAGGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAGAGCAGCTGGGGAACCTATTGTCCCGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACCTGTCTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTATCACCTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTTCTAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTAAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAGCGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTC-AAAAGGTCCAGAAGTGCTGAAGCATGTTCGATCTGCTGGTCTGCCTCTTGTTGATGATTGGGCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545614" ref_strand="+" ref_description="SGN-E545614 [TUS-68-I21]">
      <seq>gaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaaggtatgccccaacaaacgccccctttcctgagtttgcgctaaacataagaagcaaaaatatcaaatactacataacaaatcagcaggaaataaagctgttgaatcttaaagaacatattagttaacagtatgtcctctttaaacaatatctttgcaccatcttgccaccattgatggtttcataaccatattaatgtggtatagctggtttccaaaaagacactaacattacatttatgaatggtagcaatgctaaacaggcgggtaacttgtgctaagctgcaagagttatttttagtaagccacatgttgtaattcgtgggtctttatgtgtttatgtattaattggcttgtgcctctgatgtgaaatgccttcttattgattttctattcttcctcaatgctggcagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggattcaaaaaggtcctgaggtgctgaagcatgttcgatctgcgggtcagcctcttgttgatgattgggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45940" stop="44550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45640" g_stop="44850" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E545614" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45640" e_stop="44850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTG</genome_strand>
        <mrna_strand>GAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGG-ATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573006" ref_strand="+" ref_description="SGN-E573006 [32249]">
      <seq>tctgattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtactgtacattgaagcttgtgagtccggaagtatatttgaaggattcttcctaagggtctaaatatttatgcacaacagcttcaatgctgaagagagcactggggaacctattgtctggagaatatctagtcctccccctgaatatgagacctgtctgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaatttgcggactgaaaatttgaggcagcagtatcacctggtcaaaaagagaactgctaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcattgaagctatgtcacacagaatgcacctagatgagcgtattgcccttgttggtaagcttctgtttggaattcaaaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46965" stop="44609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46665" g_stop="46614" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="246" r_length="194" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="295" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="505" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45043" g_stop="44909" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="640" r_length="135" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E573006" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46665" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGT</genome_strand>
        <mrna_strand>TCTGATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTACTGTACATTGAAGCTTGTGAGTCCGGAAGTATATTTGAAGGA-TTCTTCCTAAGGGTCTAAATATTTATG-CACAACAGCTTC-AATGCTGAAGAGAGCA-CTGGGGAACCTATTGT-CTGGAGAATAT-CTAGTCCTCCCCCTGAATATGAGACCTGTCTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTATCACCTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCTAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCATTGAAGCTATGTCACACAGAATGCACCTAGATGAGCGTATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474211" ref_strand="+" ref_description="SGN-E474211 [cSTB-35-F4]">
      <seq>aaagaagcatgctgctgggacatataaaagcttggtactgtacattgaagcttgtgagtccggaagtatatttgaaggacttcttcctaagggtctaaatatttatgccacaacagcttcaaatgctgaagagagcagctggggaacctattgtcccggagaatatcctagtcctcctcctgaatatgagacctgtctgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaatttgcggactgaaaatttgaggcagcagtatcacctggtcaaaaagagaacttctaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtaaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgagcgcattgcccttgttggtaagcttctgtttggaattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46947" stop="44614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46647" g_stop="46614" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="234" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="283" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="493" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45043" g_stop="44914" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="623" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E474211" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46647" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAA</genome_strand>
        <mrna_strand>AAAGAAGCATGCTGCTGGGACATATAAAAGCTTG...................................................................................................GTACTGTACATTGAAGCTTGTGAGTCCGGAAGTATATTTGAAGGACTTCTTCCTAAGGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAGAGCAGCTGGGGAACCTATTGTCCCGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACCTGTCTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTATCACCTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTTCTAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTAAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAGCGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256679" ref_strand="+" ref_description="SGN-E256679 [cLEG-40-M12]">
      <seq>gaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttggaattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46705" stop="44614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46405" g_stop="46315" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="140" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="350" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45043" g_stop="44914" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="480" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E256679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46405" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAA</genome_strand>
        <mrna_strand>GAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557046" ref_strand="+" ref_description="SGN-E557046 [cTSD-3-B5]">
      <seq>taaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcattgcccttgttggtaagcttctgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="48103" stop="44622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47876" g_stop="47873" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="161" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="247" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="447" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="496" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="706" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45043" g_stop="44922" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="828" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E557046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47876" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGG</genome_strand>
        <mrna_strand>TAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577141" ref_strand="+" ref_description="SGN-E577141 [33130]">
      <seq>aaaaagcttggtactgtacattgaagcttgtgagtccggaagtatatttgaaggacttcttcctaagggtctaaatatttatgccacaacagcttcaaatgctgaagagagcagctggggaacctattgtcctggagaatatcctagtcctccccctgaatatgagacctgtctgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaatttgcggactgaaaatttgaggcagcagtatcacctggtcaaaaagagaactgctaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcattgaagctatgtcacacagaatgcacctagaatgagcgtattgcccttgttggtaagcttctgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46815" stop="44622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46623" g_stop="46614" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="210" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="259" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="469" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45043" g_stop="44922" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="592" r_length="123" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E577141" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46623" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAG-ATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGG</genome_strand>
        <mrna_strand>AAAAAGCTTG...................................................................................................GTACTGTACATTGAAGCTTGTGAGTCCGGAAGTATATTTGAAGGACTTCTTCCTAAGGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAGAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCCCCTGAATATGAGACCTGTCTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTATCACCTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCTAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCATTGAAGCTATGTCACACAGAATGCACCTAGAATGAGCGTATTGCCCTTGTTGGTAAGCTTCTGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550673" ref_strand="+" ref_description="SGN-E550673 [TUS-11-O8]">
      <seq>tcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46677" stop="44648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46377" g_stop="46315" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="112" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="322" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45043" g_stop="44948" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="418" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E550673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46377" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATT</genome_strand>
        <mrna_strand>TCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688326" ref_strand="+" ref_description="SGN-E688326 [t3_tus_11_o08]">
      <seq>tcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaacgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46677" stop="44648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46377" g_stop="46315" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="112" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="322" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45043" g_stop="44948" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="418" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E688326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46377" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATT</genome_strand>
        <mrna_strand>TCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253226" ref_strand="+" ref_description="SGN-E253226 [cLEG-26-H20]">
      <seq>ctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaagttccgcaaggctcctgaaggctctgctcggaaagttgaagctcagaaacaattcactgaagctatgtcacacagaatgcacctagatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="46964" stop="44654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46664" g_stop="46614" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="251" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="300" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45662" g_stop="45453" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="510" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45043" g_stop="44954" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="600" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E253226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46664" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45453"/>
          <exon e_start="45043" e_stop="44954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAA</genome_strand>
        <mrna_strand>CTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311383" ref_strand="+" ref_description="SGN-E311383 [cLEZ-18-H2]">
      <seq>aaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgttggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctgggacaaggtatgccccaacaaacgccccctttcctgagtttgcgctaaacataagaagcaaaaatatcaaatactacataacaaatcagcaggaaataaagctgttgaatcttaaagaacatattagttaacagtatgtcctctttaaacaatatctttgcaccatcttgccaccattgatggtttcataaccatattaatgtggtatagctggtttccaaaaagacactaacattacatttatgaatggtagcaatgctaaacaggcgggtaacttgtgctaagctgcaagagttatttttagtaagccacatgttgtaattcgtgggtctttatgtgtttatgtattaattggcttgtgcctctgatgtgaaatgccttcttattgattttctattcttcctcaatgctggcagttccgcaaggctcctgaaggctctgctcggaaagttgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="45939" stop="44701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45639" g_stop="45001" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E311383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45639" e_stop="45001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTC</genome_strand>
        <mrna_strand>AAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325716" ref_strand="+" ref_description="SGN-E325716 [cTOC-15-F21]">
      <seq>ggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaagagaactgcaaatggaaatactgcctatggttcccatgtcatgcaatttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgntggcatcatcaaaggctgtcaaccagcgtgatgcagatcttttacatttctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="48202" stop="45158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47902" g_stop="47873" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="187" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="273" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="473" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="522" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45662" g_stop="45458" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="727" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E325716" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47902" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGG</genome_strand>
        <mrna_strand>GGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGNTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406802" ref_strand="+" ref_description="SGN-E406802 [PPI-5-C23]">
      <seq>caacctttttagctgttctccttggtaacaaaactgcaccttacctggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcactattctatagtgatcatggtggccctggggtgcttgggatgcctaccaatccttatctatatgcaaatgatctgattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtactgtacattgaagcttgtgagtccggaagtatatttgaaggacttcttcctaagggtctaaatatttatgccacaacagcttcaaatgctgaagagagcagctggggaacctattgtcctggagaatatcctagtcctccccctgaatatgagacctgtctgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaatttgcggactgaaaatttgaggcagcagtatcacctggtcaaaaagagaactgctaatggaaatactgcctatggttcccatgtcatgcaattttggtgatctacaactgagtatggagtctctattcaggtttatgggtacaaatcctgcaaatgataactacacttatgtagatgacaattccttgtgggcatcatcaaaggctgtcacccagcgtgatgcagatcttttacatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="48070" stop="45161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47772" g_stop="47643" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="218" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="418" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="467" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45662" g_stop="45461" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="670" r_length="203" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E406802" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47772" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGC-TCTTA-CTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCA-TATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAA-TTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCT</genome_strand>
        <mrna_strand>CA-ACCTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCACCTTACCTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCACTATTCTATAGTGATCATGGTGGCCCTGGGGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCAAATGATCTGATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTACTGTACATTGAAGCTTGTGAGTCCGGAAGTATATTTGAAGGACTTCTTCCTAAGGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAGAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCCCCTGAATATGAGACCTGTCTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTATCACCTG.....................................................................................................................................................................................................................................GTCAAAAAGAGAACTGCTAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTGGGCATCATCAAAGGCTGTCACCCAGCGTGATGCAGATCTTTTACATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340090" ref_strand="+" ref_description="SGN-E340090 [cTOF-3-P1]">
      <seq>ttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaagagaactgcaatggaaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49766" stop="45588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49466" g_stop="49426" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="206" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="363" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="449" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="649" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="698" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45662" g_stop="45632" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="727" r_length="29" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E340090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49466" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAGAGAACTGCAAATGGAAATACTG</genome_strand>
        <mrna_strand>TTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTC-AAAAGAGAACTGC-AATGGAAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268690" ref_strand="+" ref_description="SGN-E268690 [cLEM-9-I23]">
      <seq>tcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctgaagaaagcagctggggaacctattgtcctggagaatatcctagtcctcctcctgaatatgagacttgcttgggtgatttgtatgctgtttcctggatggaggacagtgaaatgcacaacttgcggactgaaaatttgaggcagcagtatcacttggtcaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="48251" stop="45588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47951" g_stop="47873" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="236" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="322" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46514" g_stop="46315" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="522" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374">
            <donor d_prob="0.808" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45940" g_stop="45892" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="571" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45662" g_stop="45654" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="580" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E268690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47951" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46315"/>
          <exon e_start="45940" e_stop="45892"/>
          <exon e_start="45662" e_stop="45654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAGGTACCTGCAGCTTTTGAACTTTGCTAGCCATTTTATATAATTAAGCGGGATGGTTTTGAGTTTTACTTATTTTGTAGTTAAATGACTGAAGTTCTTGTCCTTTTTTTTTGTCTTTGCCTGAAATTACTGAATTATTTTAATATTCCATGCGGAAGAATGTGCAAATTGCAAACAAAGATACATGCATGTGACTTGCCAATGCAACGAGGGACTTGATATATGTGAATTTCTGTTTGTGTTACTTGTCCTTTTCAAATTTGGATTTTACAGTCTGATCTGGATTTACGTTTAAAGAATTACGGTTCAGCTTATAACTGTTCACACTAGCCCTATACGTTGTTGCTGAACCATTTTGTGTCTCTATTGCTGAGCAGTGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTGGTAAGTACTTTTGGACATTGAGAATTAGGTTATCTAGCTGATGTGGTAGTTAGAAAGTAAAATGATAACAAAATAAGGAATTTAGAATGCTAAAGCAAATGTATTGGTGTTCTTAAAAGGGAAAAGAACAAGGGTTTCACAAGTACCGATCCAATGATATAGTTTCTCTCTATCCTTTATTATGATGACATAATTGTGTATTTTGCATCTCTACTGCTGTTTTTTGCAGGTCAAAAAG</genome_strand>
        <mrna_strand>TCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG......................................................................................................................................................................................................................................................................................................................................................................................TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG.....................................................................................................................................................................................................................................GTCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346003" ref_strand="+" ref_description="SGN-E346003 [cTOF-24-M5]">
      <seq>gttcacgtcgccggagttttcctcctcgtcggaatcgccgtgcttgccgccgtcgaaggacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatcntaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttcctaatggtctaaatatttatgccacaacagcttcaaatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49908" stop="46120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49608" g_stop="49426" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="348" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="505" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="592" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46514" g_stop="46420" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="687" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E346003" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49608" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATC-TAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGA</genome_strand>
        <mrna_strand>GTTCACGTCGCCGGAGTTTTCCTCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCNTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346138" ref_strand="+" ref_description="SGN-E346138 [cTOF-34-O7]">
      <seq>gataataatggttcacgtcgccggagttttcatcctcgtcggaatcgccgtgcttgccgccgtcgaaggacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggtattgtacattgaagcttgcgagtctggaagtatatttgagggacttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49918" stop="46163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49618" g_stop="49426" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="358" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="515" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="601" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46514" g_stop="46463" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="653" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E346138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49618" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
          <exon e_start="46514" e_stop="46463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTGGTGAGCTGTTATATTCAATTATTTTTTAAATATTTGTGAAGCCACTTTCGTATTTTCCCTAATTTTTTAATTGTTTCTTCTTTTGCTTACTATTTCCAGGTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTC</genome_strand>
        <mrna_strand>GATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG...................................................................................................GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309925" ref_strand="+" ref_description="SGN-E309925 [cLEZ-10-M20]">
      <seq>cgataataatggttcacgtcgccggagttttcatcctcgtcggaatcgccgtgcttgccgccgtcgaaggacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacatataaaagcttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49919" stop="46312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49619" g_stop="49426" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="359" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="516" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46699" g_stop="46614" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="602" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E309925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49619" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG</genome_strand>
        <mrna_strand>CGATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245817" ref_strand="+" ref_description="SGN-E245817 [cLEF-48-K10]">
      <seq>tcacgtcgccggagttttcatcctcgtcggaatcgccgtgcttgccgccgtcgaaggacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcatgccgctgggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49906" stop="46325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49606" g_stop="49426" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="346" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="503" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46699" g_stop="46625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="578" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E245817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49606" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACAT</genome_strand>
        <mrna_strand>TCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287822" ref_strand="+" ref_description="SGN-E287822 [cLES-19-J15]">
      <seq>ctcgtcggaatcgccgtgcttgccgccgtcgaaggacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattctatagtgatcatggtggccctggcgtgcttgggatgcctaccaatccttatctatatgccgatgatctaattgctgtgttgaaaaagaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49884" stop="46338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49584" g_stop="49426" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="324" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47643" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="481" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46699" g_stop="46638" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="543" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E287822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49584" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47643"/>
          <exon e_start="46699" e_stop="46638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTGGTAAGTAGCTTATGTATGCCTCTTTTGGTTGTTGCTTTGCTTTCTATATCTTATGCTTTCATACTAATTTCGTCATGAAAATTTTGAAAGCTTGCATCTGAGTCTGCAACTCGAGATTTTCATGTGTATTGAATATTAATGACCATAGTCTCACTGCTTTCTACTATTTGAGAAATAGATGATACCTATTCATTCTGTTTCTAGTTAGGCAAACAAATAATCTTTAATTCTGAATCTGCTTATACCTTTTAACATTCTGTTTGTTTTTGAGTTCAGCAGGACAATTAGTTCACCAATAGAAATTATGGTAATGGTCTCCTAATCCAACCTCTTCCTCTCAGAAAACAAAAAGAACACTTTATACTCATGGATACAATATCACAGCTTAACCTTTCCTCTTTCATCCTGATTGACAATTACATGTCTGATTTTTTGTAATATAAATATCTGTGGTGAATATATCGCCAGCAAAGGACTCAACATATTCTCTATCTATCTTGTCTCTTTGTAGTATCTGTGCATGAACCACTTTCACATTCAGGCATCAAGCTTTGAATTGAGTACCTATGTCTGTAGTTCTATATTGTGTGGATCAATAAGAAAGTGATATTTTCTTGGAAGTGAATTTTAACAGATACTTCCTTCATTCCATTTTGGCATGACATTCTTCTTAGCCAGTTCCAAACAGAATGACACATTATTTACTTAATGAGAAAATTTTATAGTCGCAGGAAGGCTATGACATGTTTAAGACGACATGTTTCATAAGTTTTGTAGCCTCAAAAACATTTTAAGGAACATTTAAGACCACTAGAATGTCGTTTTAATTGTGCATGTTTGCTGTCAGTCAATTATATTTTCATAAACCTGATTTATTGAATTATAGGTTGGATAAATTATATCATTGCTATGTTTATAACTACTATACTGTCATGTGTACTAGGGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCAT</genome_strand>
        <mrna_strand>CTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269430" ref_strand="+" ref_description="SGN-E269430 [cLEM-2-M7]">
      <seq>gacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagtggtccaaatgatcatattttcatattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49850" stop="47372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49550" g_stop="49426" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="290" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47672" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="418" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E269430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49550" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTA</genome_strand>
        <mrna_strand>GACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282515" ref_strand="+" ref_description="SGN-E282515 [cLER-18-M22]">
      <seq>gtcgccggagttttcatcctcgtcggaatcgccgtgcttgccgccgtcgaaggacgtaatgttttgaaacttccgtcggaagcttccagattcttcgatgacgcagatgactctgttggaaccagatgggccgtccttctcgccggatcaaatggttattggaattatagacatcaggctgatgtatgccatgcgtatcagctattgagaaaaggtggtctcaaagatgaaaatattattgtcttcatgtatgatgacattgctcaccatgaagagaacccaagaccaggagttattattaatagtcctgccggtgaggatgtttacgaaggagttcctaaggattacacgggagatgatgttaatgtgcacaactttttagctgttctccttggtaacaaaactgctcttactggaggtagcggaaaggtggtgaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="49902" stop="47401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49602" g_stop="49426" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48037" g_stop="47873" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="342" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47799" g_stop="47701" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="441" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E282515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49602" e_stop="49426"/>
          <exon e_start="48037" e_stop="47873"/>
          <exon e_start="47799" e_stop="47701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAGGTAGTTATTTCGTATATTATACGTATTAGATATGCTATTGTTTGAATTTTTTGAATTAGTGTGAGTTCGTGTTTTTCTTCCGATCTAGTTCGTTTTGTTTTTTTGTAATATCTAGAAATTGTTTTTTTTTTGAATAGTAGGTATTAGATGATTGCTGTTTGTGGTGAAAATATGAAGGAAAGTTTTCAGTAAATGTATGTTGATGTTATGTTTAAGAGATGAATGGAAAATTTGAGGTGCTTGTGTTATGTATTCTTTGGTTGGTTGAAGGACAAAGTGAGCTAGACAACACTGTACTTGGATAATTGTGTTTTAATAGATGATTGCTGTTTTTAGTGAAAATACGAAGGGAATTTCAGTAAATGTATGTTAGATGTTATGTTTAAGAGATAAATGAAAATTGAGCTGATTGCATAATGTATTGTTTGTTTGGTTGAATGATATATTGAGCTAGGATACATTGCACTTGGATGTTGTCTTTGTTGCTGTTTTTGGTGAAAATAGGAAGGCAAATTTTCAGTTAATCTATGTTGATGTTATGTTTAAGAGATAAATGAACATTAAGCTGCTTGGATAATGTATTCTTTGTTTGGTTGAATGAGTTAGTGAAGTAGGAAACACTGCAGTTGGATAATTGTATTTATTGCTGTTTTTGGTGAAATGAAGGAGGAAAATTTTCAGTAAATCTATGTTGATGTTATGTTTAAGAGATAAAATGAAAATTGAGCTGCTTGCATAATTTATTCTTTGTTTGGATGAATGAGCTAGTGAGCTAGAAAATACTGCACTTGGATGATTTCGTAAAGGGTTATAGTGTACTTTTATTGGAATTTGGACTTTGGTTATGTAGTACTTGTTAGAATTAAAGGTTATAAACAAAGACTTTCATCATTATTAGCTGCTGTTTGTCCATAGATTATGAAGTTGAAACTTGAATCTTTGAGCTTTTGGAATTTGAAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAAATTGAAATTTGTGAGGGGAAGTCCCAAACCCGCCAAAACTGGTCTGAGCCAATTCTTGGGAACTTGAAAATAATATTGATGCTCAGATTTTGATCAAATTTCATGGCCAAACTGATATTTGAAAATAACATTTTCAAAAATTACTCTTAAAATCTATGGTGGCAGCTTTCCAAGTTTGTGGAACGCATCCCATTAAGACAACCAGCCAGTTAAAAACGAATCAGTTAGTAAAAAGTTTTGTCAAGACAACAGTTTCCTTCTTTTGATAGATTAGATTTGGGACTAGAGAATGGAATAAACCGGCTCTTAACTATAACTATTAGGGAGTGTCTTTATAGTATTTCTTTTCTCATACATTTACTGATAAGCCTTGTCGACCTTGACTTCTTTATCAGGCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAGGTTGGTGTTTTTCATCGTCATTTAATAAATACCTAATCTATACTTCCGTCTCATGTGCTATATCTCGAGTCAGGATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGT</genome_strand>
        <mrna_strand>GTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG.........................................................................GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541338" ref_strand="+" ref_description="SGN-E541338 [TUS-62-B6]">
      <seq>tccattttcacacagtcgtttgatcttttgccgactcttcccttgtttttttttctcaactgtaatctctttcttcatattattgtgcttaccaacaaggcctgttacatgatcacagaaaaatataatagtaattttgtgaaattatacatcttttttgcttctgtgtgcttcagaaatctcttgatttctatgtaaagattgtgttttgggtatttgggtcggtagaattcttgtttttttaggtggggtttgcttggttttcttcaattttgattggttttgttgaaaagttcagaaatttgatgtaattgtacggatttctttgaattttggaagttgaatgtatggtaaagtttcgtttttttggtttaatttaatgaatgttggagattgggtgaacctgttgagaagctattaaagggaagaaatgaagagaggaaagggtgaagagaagttgatgggacctatgtttccaaggcttcatgttaatgatacagaaaagggaggtccaaaagcacctccaagaaacaaaatggctctttatgagcagctcagtattccttctcagagattcaatatgggatttcgaataatcgcaacattgcagatattcagggaaatggacgtgaaaatgatgattttttctcagtacaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="51113" stop="53296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51413" g_stop="52031" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52032" i_stop="52954" i_length="923">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52955" g_stop="52996" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="660" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E541338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51413" e_stop="52031"/>
          <exon e_start="52955" e_stop="52996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTTCACACAGTCGTTTGATCTTTTGCCGACTCTTCCCTTGTTTTTTTTTCTCAACTGTAATCTCTTTCTTCATATTATTGTGCTTACCAACAAGGCCTGTTACATGATCACAGAAAAATATAATAGTAATTTTGTGAAATTATACATCTTTTTTGCTTCTGTGTGCTTCAGAAATCTCTTGATTTCTATGTAAAGATTGTGTTTTGGGTATTTGGGTCGGTAGAATTCTTGTTTTTTTAGGTGGGGTTTGCTTGGTTTTCTTCAATTTTGATTGGTTTTGTTGAAAAGTTCAGAAATTTGATGTAATTGTACGGATTTCTTTGAATTTTGGAAGTTGAATGTATGGTAAAGTTTCGTTTTTTTGGTTTAATTTAATGAATGTTGGAGATTGGGTGAACCTGTTGAGAAGCTATTAAAGGGAAGAAATGAAGAGAGGAAAGGGTGAAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTTAATGATACAGAAAAGGGAGGTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAGCAGCTCAGTATTCCTTCTCAGAGATTCAAATATGGGATTTCGAATAATCGCAACAATGCAGATATTCAGGTATTCAAACTTGAATTTATCCCTTTTGCTGTGTGTGTATGAGTAATATGTGTGAGCTGATACATTAATTCTTAGCTTTGAATGTATGATATTCCTTTTTTCTGAGTTTACATGAGTAACATATGTGAGCTGATTCATTAATTTGGCCAATAGAGTTGGACATTAGCTTTGAATGTTATGGTTTACTGTTATGATTGGTAGCTTTTGATTTTTTAAAGTCTGTTGTTAGACCTGTTTAAGATAAAAGAGTTCATTTTTATCCTTTTGAATTCTTAGATTTGTTTTCACCCAAAAAAAACAAAAACACTCTTATAGGATAGGATTGTTGTTTCTCTCACAGGAATTGGGTTTAATTGCAATGAGTTGCTGAAGAATTATAACGGAATCAATAGTCTTAAGTTTGTGATATTGCTCAAAATCTTCTAGATTGACCATTGTGTGCCAGCATTATTGAGATAATCACTAGATGATATGCACACAGTTCGCTAACCTCCTTTGTTTTGTTTTATTCGGGAAAAGGTTGGGGTGGCTTGACACCACTTCCATTGACATGTTTTGCATACCAATTAGGAAGTTTAGTATTACCTTGAAATTCTTAAGTTCTTCACCTTAATGTTCCAGCAGGATGTTATTAACTAATATATGTGATTGTCCGTCTCTTAAAGGTCTGTTGATGAGAATTTGAATTACCTCATCAAATTAAGTAAATGGTTTTGTCATTTCCTTGCTTTCTTTTTTCTGATGTTTTTCTTGGAAACTAAAGATAATGTACTAGTAGCAAACGGACTGTTACATCAAAAGAGGTTTCATGATGTTATCCATTTCACTCCGGATTTGATTTATATTTTTTGTGCATGGTGATTATGAATCTTGTAGATGTTTGATTGTATGGCCTAACTGATTTAAGCAATTAAATTTTGCAGGGAAATGGACGTGAAAATGATGATTTTTTCTCAGTACAACTT</genome_strand>
        <mrna_strand>TCCATTTTCACACAGTCGTTTGATCTTTTGCCGACTCTTCCCTTGTTTTTTTTTCTCAACTGTAATCTCTTTCTTCATATTATTGTGCTTACCAACAAGGCCTGTTACATGATCACAGAAAAATATAATAGTAATTTTGTGAAATTATACATCTTTTTTGCTTCTGTGTGCTTCAGAAATCTCTTGATTTCTATGTAAAGATTGTGTTTTGGGTATTTGGGTCGGTAGAATTCTTGTTTTTTTAGGTGGGGTTTGCTTGGTTTTCTTCAATTTTGATTGGTTTTGTTGAAAAGTTCAGAAATTTGATGTAATTGTACGGATTTCTTTGAATTTTGGAAGTTGAATGTATGGTAAAGTTTCGTTTTTTTGGTTTAATTTAATGAATGTTGGAGATTGGGTGAACCTGTTGAGAAGCTATTAAAGGGAAGAAATGAAGAGAGGAAAGGGTGAAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTTAATGATACAGAAAAGGGAGGTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAGCAGCTCAGTATTCCTTCTCAGAGATTC-AATATGGGATTTCGAATAATCGCAACATTGCAGATATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGACGTGAAAATGATGATTTTTTCTCAGTACAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296771" ref_strand="+" ref_description="SGN-E296771 [cLET-26-I19]">
      <seq>ccattttcacacagtcgtttgatcttttgccgactcttcccttgtttttttttctcaactgtaatctctttcttcatattattgtgcttaccaacaaggcctgttacatgatcacagaaaaatataatagtaattttgtgaaattatacatcttttttgcttctgtgtgcttcagaaatctcttgatttctatgtaaagattgtgttttgggtatttgggtcggtagaattcttgtttttttaggtggggtttgcttggttttcttcaattttgattggttttgttgaaaagttcagaaatttgatgtaattgtacggatttctttgaattttggaagttgaatgtatggtaaagtttcgtttttttggtttaatttaatgaatgttggagattgggtgaacctgttgagaagctattaaagggaagaaatgaagagaggaaagggtgaagagaagttgatgggacctatgtttccaaggcttcatgttaatgatacagaaaagggaggtccaaaagcacctccaagaaacaaaatggctctttatgagcagctcagtattccttctcagagattcaaatatgggatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="51114" stop="52303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51414" g_stop="52003" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E296771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51414" e_stop="52003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTCACACAGTCGTTTGATCTTTTGCCGACTCTTCCCTTGTTTTTTTTTCTCAACTGTAATCTCTTTCTTCATATTATTGTGCTTACCAACAAGGCCTGTTACATGATCACAGAAAAATATAATAGTAATTTTGTGAAATTATACATCTTTTTTGCTTCTGTGTGCTTCAGAAATCTCTTGATTTCTATGTAAAGATTGTGTTTTGGGTATTTGGGTCGGTAGAATTCTTGTTTTTTTAGGTGGGGTTTGCTTGGTTTTCTTCAATTTTGATTGGTTTTGTTGAAAAGTTCAGAAATTTGATGTAATTGTACGGATTTCTTTGAATTTTGGAAGTTGAATGTATGGTAAAGTTTCGTTTTTTTGGTTTAATTTAATGAATGTTGGAGATTGGGTGAACCTGTTGAGAAGCTATTAAAGGGAAGAAATGAAGAGAGGAAAGGGTGAAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTTAATGATACAGAAAAGGGAGGTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAGCAGCTCAGTATTCCTTCTCAGAGATTCAAATATGGGATTTC</genome_strand>
        <mrna_strand>CCATTTTCACACAGTCGTTTGATCTTTTGCCGACTCTTCCCTTGTTTTTTTTTCTCAACTGTAATCTCTTTCTTCATATTATTGTGCTTACCAACAAGGCCTGTTACATGATCACAGAAAAATATAATAGTAATTTTGTGAAATTATACATCTTTTTTGCTTCTGTGTGCTTCAGAAATCTCTTGATTTCTATGTAAAGATTGTGTTTTGGGTATTTGGGTCGGTAGAATTCTTGTTTTTTTAGGTGGGGTTTGCTTGGTTTTCTTCAATTTTGATTGGTTTTGTTGAAAAGTTCAGAAATTTGATGTAATTGTACGGATTTCTTTGAATTTTGGAAGTTGAATGTATGGTAAAGTTTCGTTTTTTTGGTTTAATTTAATGAATGTTGGAGATTGGGTGAACCTGTTGAGAAGCTATTAAAGGGAAGAAATGAAGAGAGGAAAGGGTGAAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTTAATGATACAGAAAAGGGAGGTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAGCAGCTCAGTATTCCTTCTCAGAGATTCAAATATGGGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700911" ref_strand="+" ref_description="SGN-E700911 [FA14CA09]">
      <seq>cttcagagttcctatatttgttaaatccaaggcgagccaaggaaatggaaagctttatagtactctggatggtagaaagctctctgcctctactgcagtaatttcggggcattctagaaaagacttgaatgatgagaacttcaaacagatcgccgtaggcagagagatttcgtgcaactctacctcaattccatcaatggataagctagatgatcttctgaagaaagctgatgtacaattgcaatatgaaccgagaaatgaccctgataatactttaggcatattgtgtaagaatgatctgctacaaccggaatgcagagttgatcctcaagttggtggcaccatgctatctgaacctgttagggttgttgatattggtgattcttctcttcttgtgaaggatgttgcatcaaaagagcatataattcctaataataatcaaagtaatgataaggaatcaaaggaagacaaggcatctgaatcattacaaacaaaaattgtgaaccaggatgacgacttatcagagacttccatggtggaatctatatttggaatgtacatatctcctgacgatgttgttgcgataataggtcaaaaacatttctggaatgccagaagagctattgccacccagcaaagagcgtttgcggttcaagtttttgagttgcatcgtctaataaaggtccagagactcatagctagttcacaaagcatgcttgaagatagtgcttatttaagcaaagcggtaaaggattcatctcctaaaaaacttccattggagtatatcgcaagagatggtcacaatgttccgaagcagaggaagaattttgagaagccaaacactaggatggaatgttctgcggaaaataagaaagcaaacctgtgaaggattcatctgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="52798" stop="57307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53098" g_stop="53727" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53728" i_stop="56465" i_length="2738">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56466" g_stop="56517" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="682" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56518" i_stop="56785" i_length="268">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56786" g_stop="57007" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="903" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E700911" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53098" e_stop="53727"/>
          <exon e_start="56466" e_stop="56517"/>
          <exon e_start="56786" e_stop="57007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGAGTTCCTATATTTGTTAAATCCAAGGCGAGCCAAGGAAATGGAAAGCTTTATAGTACTCTGGATGGTAGAAAGCTCTCTGCCTCTACTGCAGTAATTTCGGGGCATTCTAGAAAAGACTTGAATGATGAGAACTTCAAACAGATCGCCGTAGGCAGAGAGATTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTAGATGATCTTCTGAAGAAAGCTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGATAATACTTTAGGCATATTGTGTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCTCAAGTTGGTGGCACCATGCTATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCTCTTCTTGTGAAGGATGTTGCATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAATGATAAGGAATCAAAGGAAGACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAGGATGACGACTTATCAGAGACTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCTGACGATGTTGTTGCGATAATAGGTCAAAAACATTTCTGGAATGCCAGAAGAGCTATTGCCACGTAAGTTCAACTGTTTTGTATTGGCTTGGTGAATGATAAATATTTGAACTTGACATTTGAATTTTATCATTGCATGAAGTATGAGTCTGCCAACTCTTTGGTAGTTGGGTGGATGATCTTGTATGTTAGCTTTTGTTTTGAACTTGATTTCCACTTAACTGATGATGTACTTCCAAGTGCTACTCAGATCATCATTTATAGAGAAAGTGACCAGTTGACCTTTATGTGTATCCTCATGGTATTTTATGTAAATGAGGTACGTTCTCCTGGAGTATTTTTGCATGCTGCAACAACATTATCTGTTCTGTGAATGTATGACATTTTCTCTTGAAATATCTGCCTACTTTATCAGTTATGTCACTTGTTATTCAGAATGATCCTGAAGGATATTTATCACTTGTTAGACATCTCTTCCTACTTAAATTTGACATTTGAACTGCAATATGTTTTATAAGAAAGACCTTGTCAGATAATGCATCTTGATAATCTTTCGACGTCATGGTCTAGTCTTGCCACTGGGTGCAGTTTGAGTGGCATGTTTTGTTATTTAGATGATTACGAGTGACGTGGGCTTTCTACAACATGAAACTTCCCCCATAAAGAGTTTTATTTTAAAAGTTTTTGTAGTCTACTTCATCATTTGCTTTTGTAATGTTAATGGTCTTTATTCAATTAGAGCTTTCTCACCTTATATTAGGATATTTATTGGTTTTCGTTAGTCTCTGCTGGGGGTCTTTAAAAATTTAGACTGAGTGGTTGCTGACTTGATGCAAGTGGATGGAGTGTGAAAGGTCTCAACACCTTTGAATGGGATAATGACTTTTTTGAATACTACCTCCTCTTGTCCATTATAAATGACCTTTTAGCTCAAAAGAATTGATCCAAAATTAGTGTCTTCGAGAAATCAAGAAGACATTAATTTTTTCTTTTCAAATCATTTGTTGTTCTCGCTCTAGCAAGATTGAATAAGCTCAATCAAATTTGACATTCCCATCGCCTCAACCTTACAATGGAATTGGAATTCAAGCTCAATTAGAAATATATAAAATTCGCCTCAGGTTCAATGTCAATGTGTTAAATTCAATCAAAATAGATGTTGGTAAGCCAAGAAAAACAATTAAATCTACATTATAAAATTTAAAGAAACACAAAGTAAGTGACTACATCGAGATCACTATTGAAGAAACTAGAAACAAGACTTAACTGAAATAATTTAAAAGTATTTATACCATTTTAGTATCACATTTCAATTGAGCAAAAAATCGGCTTTTCCTTTATAACATTGCTTTTCTACGATGTATAATTATGTATTTATGGGAACCTTTTGCTCACACAATTTTGATCATGCATGATTGCAATTTAGAAGAATATGATTGATTTCCATGTTAAAGAACTTCATTTGATTTCATAACAATTGTACAAGCTCATCAACAATTTAGGTGTCCTTTTATGTTGTAAGGATTGAATAACTCCAAAAAATTCAAGGTCTATATCTTCAAATTGATGGAATTTAGTGATCGACACATTAATTTATTAAACGAATATCAAATCCATCTTGTGTTGCTACTCGACAAAATTCTTCATCGTCAAGATAAATATATGTTCTTTCCATATCTTACTGAATGAATATTGGATAACTTCAGTCTCGTCATGGCGGTTTTGCCTTGATAGTAAGAATAATTTATAATTTGTTCAATGAAGTATGACCTTACAATGTCTTTGGTTAGTCAAATTACTGGTTTTTGTCTCTGGATTATGGAAGCTCTATTACGACTCTTTTAGCTTGTTCTTATGTGATTTAGGGGAACATACCAATTTTTCAAAAGAAGAGTTAATTTCCTTGTGCATCAAACCCTGGATGAGCTATAACAACTTAAAGCTTAGATTCTTATGAAGTTTCTGAAACGGCAGTTCCTAGTCTCTTCGTTAGAACTCAATATATTTGGTTTGCTTATTCATTTCTAGAGCTCGACATATTTCTTTTTCCATATGTCTCTATTGTTGTGTGAAAGAAAAAGATATTCAAGGAAAGAAATTGAAGGAGAAAACAGTACAGTAGATACATGTTTATAAGAACATAAATATTGAATGAAATTCACAGGAAAACAAGGAGAGAGGCAAAATTGGTTTTCCTTGCTCGGGCTGGTGACCCTCTCTGTTTTAATAAGTTCACATGAACAAAATTGGTTCTGTGGTGGAGAGAGGCAAAGTCTGGTGCTAGCATACTGATGCATTTTAATGACTTCTAAAGCTCTAATGTCAATGTGCATCCTAGAACTACATAAAAGGGTTATGCTGTGATGGAAGCTGTTTCCACCACATATTAGTGCTATAGGAAAGGTCATCCTGTTGACAGCCTTATATTGATTATGATATCGAAGAGATGTTGTATGTGTCAAATCCGTAGAAAAACGAGAGGCTTTAAATATGGCCTTGTCTTTTTGAAGCTCTAGAATTTTTTATCACCTGGTTGGTTGTCTATTTCTGTTTTAGGTTCTCTTTTGTTCAAGTGTCTTGATGGAACCGACTACTTTTTAGATGGGTGAGGATATCCATCCCCCTTTTCTTTCGTCAGCATTTGTTGTTGTCTTGTCTCTAGATTGACATAGTGGTACTTTCTCTTAAAAATTGTCTTCAGCAGTGCACTAGTCTATTTTTTTCTCAATGCACTTGAAAGAGCTAACTTCTTTCTATTTGTTATTTGTTTGCCTGACGTTTTCCCTGTTGTCCTGGAACAGCCAGCAAAGAGCGTTTGCGGTTCAAGTTTTTGAGTTGCATCGTCTAATAAAGGTGAGATAGTTGTAGAGGCTAAATTTCTCATAATATCAGAATGCAATTTTGTACTGTAGACAATATAGATGTCATGTTGGACTGGATCGACTCGCTACAGAGACAAGAGGAGTCAGTCAATTCCTATGATGTAAACATTTTTAGCACTATCATTGGTGCTGTGCCTTTTGAACTAATAAACTTACATATCAGAAAAACACAATTTTGATTTACCTTTTTTCCTATTGAATTAAGTAATTCTGCTGAAGCTTTTGTGTAACTATCTCAGGTCCAGAGACTCATAGCTAGTTCACAAAGCATGCTTGAAGATAGTGCTTATTTAAGCAAAGCGGTAAAGGATTCATCTCCTAAAAAACTTCCATTGGAGTATATCGCAAGAGATGGTCACAATGTTCCGAAGCAGAGGAAGAATTTTGAGAAGCCAAACACTAGGATGGAATGTTCTGCGGAAAATACAGAAGGCAAACCTGTGAAGGATTCATCTGCTAAA</genome_strand>
        <mrna_strand>CTTCAGAGTTCCTATATTTGTTAAATCCAAGGCGAGCCAAGGAAATGGAAAGCTTTATAGTACTCTGGATGGTAGAAAGCTCTCTGCCTCTACTGCAGTAATTTCGGGGCATTCTAGAAAAGACTTGAATGATGAGAACTTCAAACAGATCGCCGTAGGCAGAGAGATTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTAGATGATCTTCTGAAGAAAGCTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGATAATACTTTAGGCATATTGTGTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCTCAAGTTGGTGGCACCATGCTATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCTCTTCTTGTGAAGGATGTTGCATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAATGATAAGGAATCAAAGGAAGACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAGGATGACGACTTATCAGAGACTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCTGACGATGTTGTTGCGATAATAGGTCAAAAACATTTCTGGAATGCCAGAAGAGCTATTGCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAAAGAGCGTTTGCGGTTCAAGTTTTTGAGTTGCATCGTCTAATAAAG............................................................................................................................................................................................................................................................................GTCCAGAGACTCATAGCTAGTTCACAAAGCATGCTTGAAGATAGTGCTTATTTAAGCAAAGCGGTAAAGGATTCATCTCCTAAAAAACTTCCATTGGAGTATATCGCAAGAGATGGTCACAATGTTCCGAAGCAGAGGAAGAATTTTGAGAAGCCAAACACTAGGATGGAATGTTCTGCGGAAAATA-AGAAAGCAAACCTGTGAAGGATTCATCTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246379" ref_strand="+" ref_description="SGN-E246379 [cLEF-52-O16]">
      <seq>gatttcgtgcaactctacctcaattccatcaatggataagctagatgatcttctgaagaaagctgatgtacaattgcaatatgaaccgagaaatgaccctgataatactttacgcatattgagtaagaatgatctgctacaaccggaatgcagagttgatcctcaagttggtggcaccatgctatctgaacctgttagggttgttgatattggtgattcttctcttcttgtgaaggatgttgcatcaaaagagcatataattcctaataataatcaaagtaatgataaggaatcaaaggaacacaaggcatctgaatcattacaaacaaaaattgtgaaccaggatgacgacttatcagagacttccatggtggaatctatatttggaatgtacatatctcctgacgatgttgttgcgataataggtcaaaaacatttctggaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="52963" stop="54009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53263" g_stop="53709" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E246379" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53263" e_stop="53709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTAGATGATCTTCTGAAGAAAGCTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGATAATACTTTAGGCATATTGTGTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCTCAAGTTGGTGGCACCATGCTATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCTCTTCTTGTGAAGGATGTTGCATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAATGATAAGGAATCAAAGGAAGACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAGGATGACGACTTATCAGAGACTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCTGACGATGTTGTTGCGATAATAGGTCAAAAACATTTCTGGAATGC</genome_strand>
        <mrna_strand>GATTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTAGATGATCTTCTGAAGAAAGCTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGATAATACTTTACGCATATTGAGTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCTCAAGTTGGTGGCACCATGCTATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCTCTTCTTGTGAAGGATGTTGCATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAATGATAAGGAATCAAAGGAACACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAGGATGACGACTTATCAGAGACTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCTGACGATGTTGTTGCGATAATAGGTCAAAAACATTTCTGGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619837" ref_strand="+" ref_description="SGN-E619837 [70531]">
      <seq>gcacgagggtcatgactccttccgaaggactatatacaagccatatcctggaccggagtcacgagtcaatctgtggaggttatggacccccaggatcgactccgataatcggaaaccattcagctccatcttatggaattccagcttctcatcatcagtatcaaggagtcagaatgccttttgcacctccagctggtcacaactactttccttcgtatggcatgccagccattaatccagcaatctcatcttcacctgtcgatcaatcaagtcagttcattgctcaaggtttacaaggtcagttatcaggaggaggagctaatttttctgttcaacgtcagaactcaagtaacatgccaagcaataagaatgggacagatgtgaaatctcattcctatagagatgctgagatgcaggccagcactgcaagcagtccaagtggaacagctaacaaaataattgtggataacgccacagagcgaagaaatgttcttcctctattcccaacttctccagctaccaagaacccggatataagctcccaacctcaagtacctagtcatcatgctcgagtcatcaaagtcgtacctcgtaatgcaaggtctgccacagaatctgctgctcggatttttcagtctattcaagaagagagaaaacaatacgactctggtgttaattaatcatctatagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="56960" stop="58253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57261" g_stop="57953" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="693" r_length="684" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E619837" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57261" e_stop="57953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGACTCCTTCCGAAGGACTAGTATACAAGCCATATCTTGGACCCGGAGTCACGAGTTCAATCTGTGGAGGTTATGGACCCCCAGGATCAACTCCAATAATCGGAAACCATTCAGCTCCATCTTATGGAATTCCTGCTTCTCATCATCAGTATCAAGGGGTCAGAATGCCATTTACACCTCCAGCTGGTCACAACTACTTCCCTTCGTATGGCATACCAGCTATTAATCCAGCAATCTCATCTTCAGCTGTCGATCAATCAAGCCTGTTTGTTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGAGCTAATTTTTCTGTTCAACGTCAGAACTCGAGTAACATGCCAAGCAATAAGAATGGAACTTTCCCAGAGGTGAAATCTCGTTCCTGTAGAGATGCTGAAATGCAGGCCAGCACTGCAAGCAGTCCAAGTGGAACAGCTAACAAAATAACTGTGGACAACGCCACAGAACGAAGAAACGTTCTTCCTCTATTCCCAACTTCACCAGCTACCAAGAACCTGGATATAAGCTCCCAACCTCAACTGCCTAGTCATCATGCTCGAGTCATCAAAGTCGTACCGCGTAATGCAAGGTCTGCCACAGAATCTGCTGCTCGGATTTTTCAGTCTATACAAGAAGAGAGAAAACAGTATGATTCTGTTGTTAATTAATCATCTATAGACA</genome_strand>
        <mrna_strand>TCATGACTCCTTCCGAAGGACTA-TATACAAGCCATATCCTGGA-CCGGAGTCACGAGT-CAATCTGTGGAGGTTATGGACCCCCAGGATCGACTCCGATAATCGGAAACCATTCAGCTCCATCTTATGGAATTCCAGCTTCTCATCATCAGTATCAAGGAGTCAGAATGCCTTTTGCACCTCCAGCTGGTCACAACTACTTTCCTTCGTATGGCATGCCAGCCATTAATCCAGCAATCTCATCTTCACCTGTCGATCAATCAAGTCAGTTCATTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGAGCTAATTTTTCTGTTCAACGTCAGAACTCAAGTAACATGCCAAGCAATAAGAATGGGA------CAGATGTGAAATCTCATTCCTATAGAGATGCTGAGATGCAGGCCAGCACTGCAAGCAGTCCAAGTGGAACAGCTAACAAAATAATTGTGGATAACGCCACAGAGCGAAGAAATGTTCTTCCTCTATTCCCAACTTCTCCAGCTACCAAGAACCCGGATATAAGCTCCCAACCTCAAGTACCTAGTCATCATGCTCGAGTCATCAAAGTCGTACCTCGTAATGCAAGGTCTGCCACAGAATCTGCTGCTCGGATTTTTCAGTCTATTCAAGAAGAGAGAAAACAATACGACTCTGGTGTTAATTAATCATCTATAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541335" ref_strand="+" ref_description="SGN-E541335 [TUS-62-B6](-)">
      <seq>gttatggacccccaggatcaactccaataatcggaaaccattcagctccatcttatggaattcctgcttctcatcatcagtatcaaggggtcagaatgccatttacacctccagctggtcacaactacttcccttcgtatggcataccagctattaatccagcaatctcatcttcagctgtcgatcaatcaagcctgtttgttgctcaaggtttacaaggtcagttatcaggaggaggagctaatttttctgttcaacgtcagaactcgagtaacatgccaagcaataagaatggaactttcccagaggtgaaatctcgttcctgtagagatgctgaaatgcaggccagcactgcaagcagtccaagtggaacagctaacaaaataactgtggacaacgccacagaacgaagaaacgttcttcctctattcccaacttcaccagctaccaagaacctggatataagctcccaacctcaactgcctagtcatcatgctcgagtcatcaaagtcgtaccgcgtaatgcaaggtctgccacagaatctgctgctcggatttttcagtctatacaagaagagagaaaacagtatgattctgttgttaattaatcatctatagacagtagttacttatctagtcatttaggtgaccattagttcattataatgtgttttatgtataatttcttgtaaccttttagataactggaacttatttggtaagtgagtcattttgtaaataacatacttaccttataattatataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="57033" stop="58406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57333" g_stop="58098" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="790"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E541335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57333" e_stop="58098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGGACCCCCAGGATCAACTCCAATAATCGGAAACCATTCAGCTCCATCTTATGGAATTCCTGCTTCTCATCATCAGTATCAAGGGGTCAGAATGCCATTTACACCTCCAGCTGGTCACAACTACTTCCCTTCGTATGGCATACCAGCTATTAATCCAGCAATCTCATCTTCAGCTGTCGATCAATCAAGCCTGTTTGTTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGAGCTAATTTTTCTGTTCAACGTCAGAACTCGAGTAACATGCCAAGCAATAAGAATGGAACTTTCCCAGAGGTGAAATCTCGTTCCTGTAGAGATGCTGAAATGCAGGCCAGCACTGCAAGCAGTCCAAGTGGAACAGCTAACAAAATAACTGTGGACAACGCCACAGAACGAAGAAACGTTCTTCCTCTATTCCCAACTTCACCAGCTACCAAGAACCTGGATATAAGCTCCCAACCTCAACTGCCTAGTCATCATGCTCGAGTCATCAAAGTCGTACCGCGTAATGCAAGGTCTGCCACAGAATCTGCTGCTCGGATTTTTCAGTCTATACAAGAAGAGAGAAAACAGTATGATTCTGTTGTTAATTAATCATCTATAGACAGTAGTTACTTATCTAGTCATTTAGGTGACCATTAGTTCATTATAATGTGTTTTATGTATAATTTCTTGTAACCTTTTAGATAACTGGAACTTATTTGGTAAGTGAGTCATTTTGTAAATAACATACTTACCTTATAATTATATAA</genome_strand>
        <mrna_strand>GTTATGGACCCCCAGGATCAACTCCAATAATCGGAAACCATTCAGCTCCATCTTATGGAATTCCTGCTTCTCATCATCAGTATCAAGGGGTCAGAATGCCATTTACACCTCCAGCTGGTCACAACTACTTCCCTTCGTATGGCATACCAGCTATTAATCCAGCAATCTCATCTTCAGCTGTCGATCAATCAAGCCTGTTTGTTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGAGCTAATTTTTCTGTTCAACGTCAGAACTCGAGTAACATGCCAAGCAATAAGAATGGAACTTTCCCAGAGGTGAAATCTCGTTCCTGTAGAGATGCTGAAATGCAGGCCAGCACTGCAAGCAGTCCAAGTGGAACAGCTAACAAAATAACTGTGGACAACGCCACAGAACGAAGAAACGTTCTTCCTCTATTCCCAACTTCACCAGCTACCAAGAACCTGGATATAAGCTCCCAACCTCAACTGCCTAGTCATCATGCTCGAGTCATCAAAGTCGTACCGCGTAATGCAAGGTCTGCCACAGAATCTGCTGCTCGGATTTTTCAGTCTATACAAGAAGAGAGAAAACAGTATGATTCTGTTGTTAATTAATCATCTATAGACAGTAGTTACTTATCTAGTCATTTAGGTGACCATTAGTTCATTATAATGTGTTTTATGTATAATTTCTTGTAACCTTTTAGATAACTGGAACTTATTTGGTAAGTGAGTCATTTTGTAAATAACATACTTACCTTATAATTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746511" ref_strand="+" ref_description="SGN-E746511 [GI|47104239]">
      <seq>actgaatattccttcaatcaaatttattatagctttcatattcatactggattgaaaaaattctcatttttctcattccaattttgttttctggttcagtatttcatcggttcagtgatctgtgaagtttagcagcttttatgtttgatggtgagttccgagagcttaagtgagtctgttgcaccaccaacaatgaaatatggtatcacaaagccattatctcttgctggaccgactgaggcagatcttcaaagaaatgcagaactggaaaagtttttgagggaatcagaattgtatgagagtgaggaagagactgcaaggagagaagaagtactgcggcgacttgaccagattgtaaaacaatgggtgaaacaattgactcgccagagaggctacatagatcaaatggttgaggatgcaaatgctatcatagtcacctttggctcttatcgtctaggggttcatggaccaggagctgacctggacacattgtgtgttggtccctgctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagttcgtgaacttcaaccagttcctgatgctcatgtccctgttatgaaattcaaatttcaagggatttcaattgatcttctttatgcaagtataactctcttggttattcctgaagatttggatatctcagaccaatctgtactctgtaatgtggatggaccaactgttcgaagtctgaatggttgtcgagttgctgatagaatactgaaactagttcccaatgctaaggtaaccatcagtgttcctccttctcttaaatgattgatcatttccatgtttacttaaaacttttgcagcacttccgtacaactcttagatgtctgaagttctgggccaaaagacgtggtgtttattccaatgttactggatttcttggtggggtgaattgggctcttttggttgctcgcatttgccagttttacccaaatgcaatccctagtatgcttgtttctaggttcttccgtgtttatacacaatggcgttggccaaatcctgtgatgttatgcccaatagaagaggatgaacttgggtttcttgtttgggatccgcgcaagaatcctaaagacagaactcatcatatgccaatcatcactcctgcctacccttgcatgaactctagctataacgtctcaccaagcactcttcgagtaatgatggaccaatttcagattggtaacaagatttgtgaggatgtggagttgaataaatcacagtggccttctctttttgagcattactttttctttgaggcgtacaaaaactatctccaggttgaaatcgtggcagcagataatgatgatttgctagcttggaaaggctgggtggaatcacggcttcgacaactcacgctaaagatagagcgggataccaatgggacgttgcagtgccatccttatcctaatgaatttgcggacatgtcgaagccatgcccgcattgtgcttttttcatgggtttgcagaggcaaaagggtgtcaaagtacaagaaggtcaacggtttgatatccgtggaacagtcgatgagtttaagcaagatgtaaacatgtactcttattggataccgggcatggatatctatatctcgcatgttcctaggagggaaattcctgcttatgtctttcctgatgggtataagagaccacgtcaatctagaaatacaactcagcatactcccgagaaagatgccaaaggttgcatgtcttctgaaggaaggcgttcaaagaggaagcaggaaacccatacagttgatgtagagtccgacaaactgccgaaacgtgcttctattagtcctcaaaatataggatctgtttctcccgcaagtgtttctagtcggacaggcggatcatcacagatgatcattcccgaggagtcactccaggaggttaagactgctggccttcaaaaccaaagttctgatgataaatcaacagaggatactggggagcagaaaccatgcatttctgagtgaaatgaaaattccagcctgatagtttagtcatcacctcatcaaggaacttgttgggagttataaaagaaggttttcttgaccaatccaacgtaacattctaccgtagccaggaggcgcttagtacttgtgaacaatgtctaagaggtgccccagcatcgcagactatacaggatgacaaaaaggtggacgacgatgatgatgagcagccagctcgattgaccaggtatacaaacttgaggtgggtggatggtgtgaaggagttgaaatgtgctcgcatcaaattccaaaattcaaaacctcttgaggagtttcggtgagtttttgactcacgagtagtggccgatggcagtgagagactggaagctttgagtcgttgcaggatgatacaagacttgatttcagctgtgtggggtggatgtcgaagtgataaacggatagtgcatgaactacactacaaatccagcagcaggggttaaaggcagcacagcataatcaagattttccccagacaacaaaaatcaacattaagagagagtagaactagaaagcagcaccagagtccagcagcatagctattgaggtgaggtaagtttcaaaatttgaaagagagagaacatggatggtgaaaagactgaatttgtagaaggctatattagcactttgtttagagggttgtttaattttcatgatatgtttgtatggtattctattgttttgatgaatataatatttttggctaaattgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="66892" stop="59602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66592" g_stop="66451" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66450" i_stop="65474" i_length="977">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65473" g_stop="65344" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="273" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65238" g_stop="65161" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="351" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65160" i_stop="64212" i_length="949">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64211" g_stop="64104" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="459" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="522" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62893" g_stop="62732" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="684" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62400" g_stop="62156" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="929" r_length="245" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62155" i_stop="61979" i_length="177">
            <donor d_prob="0.800" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61978" g_stop="61649" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1259" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61648" i_stop="61554" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61553" g_stop="61389" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1260" r_stop="1424" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61388" i_stop="61241" i_length="148">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61240" g_stop="59949" g_length="1292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1425" r_stop="2714" r_length="1290" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2782" polyA_stop="2796"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E746511" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>2715</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66592" e_stop="66451"/>
          <exon e_start="65473" e_stop="65344"/>
          <exon e_start="65238" e_stop="65161"/>
          <exon e_start="64211" e_stop="64104"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62732"/>
          <exon e_start="62400" e_stop="62156"/>
          <exon e_start="61978" e_stop="61649"/>
          <exon e_start="61553" e_stop="61389"/>
          <exon e_start="61240" e_stop="59949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATATTCCTTCAATCAAATTTATTATAGCTTTCATATTCATACTGAATTG-AAAAATTCTTATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATGGTAATCTGAATTCTGGGTAACTCTATTTAGTCATTTTCTTCTCTGGGTTTTTTGTTTTGCTGTTTAATTTTGTTTATTGAGTTGAAAAATCTGTTTTTTTCTTTCGATTTTTGGTTCTGCATTTGATTGGTTTAGTAATCAGTGATCTGTGAAGTTCAGTTTGTATGCTAATCTGAATTATGGGTAACTTGACTGGTTTTTATCTGCTCTAGGGTTTTTCTTTTTCAATTTCTGTTCTTAGAGTTTGAAAAATCCTCTATATTTTCCGTTTCTAGCTCCGCATTTTATTGGTTTAGGATCAGTGAAGTTCAGGTTCTATGTTAATTTGAATTCTGGGTAATTCGATTGGTTTTTTCCTGTTCTGGGTTTTTTTGCCTTTGAAATTTTTGTTCATAGAGTTGAAAAAGATCCCCCCTTTTACCTTTTCTGGTTTGCATTTGATGGTTCAGTGATCTGTGAAGTTCAGCTTCTATGCTAATTTGAATTCTGAGTAGCTCCACTGGTCTTTTTCGCTTTTTTTTTTCAATTTCTGTTCATAAAGTTGAAAAATTCTCTGTATTTTCCTTTTCTGGTTCCGCATTTGATTGGTGCAGTGATCTGTGAAATTTAGCTTCTACTCTAATCTGAATTTTGGTTACTCGTGGGTTTTTCATACAATTTCTGTTCCTTCATAGTTAAAAAATTCTCCGTTTTTTTTTTTTGGTTTTCTGGTTCGGTGTTTGTTCGGTTCAGTGATATGTGAAGTTTAGGTTTTATGCTAATTTGAGTTCTGGTAACTTGACTGGCCTTTTTCATTTGATTGTTCTGGTTCTGCATTTCATCAGTTCAACAAACAACAGTAACAACATACTCGGTGAAATCCCGTGAAGTGGTTTGTATTTCAATTGTTAAATGATGTGTAAAGCTTATTTTATGCTAATCTGAAGTTTGGGAACTCAGACTGGTATTCTTTTTGGGTTGTTTCCTTTTGTTGTCAGTGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAGGTAGTTCTTTTCTTTTCTTATATATTTTGTTCTAGGATTGTCTGAGTTGATTTCACTTGAATCATGAATTTGTATTGACTTTTGGGTTTTATGGTGATGGGGTAGTTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAGGTAATTGAACCACATTAATTACTTTAACAATTTGGATTATGAGAGAATAGATGGATTATTTTATATAGTTATTAGTTATGTAGAGATTAGTTATTCATGTACTTAGTTATGCTGATTTCTATATTGTCAACCAAACGTCATATTAATTCTATACCAAAAATAACTTATTTCATATCTACCTTTCATACGTTGTACAACAACAACATACTTAGTCCCACTAAAGGGGATTTGGAGAGGGTAGAGGGTATCTAGACCTTATCACTACCTTGTGGAGATAGAGAGACCGTCTTCGAAAGACCCTTAGCTCAAGTGTATCAAACCCAAGTAAAAGAAGAGGAAAACAGTGAAGAAAACAGAACATTTAATAAGAAAAAGCAGTGTACAATCGACAGAAGGAGCAATAACAACAACAAAATAGCGTGGGAAGTGAAATGCAAAAAAAAAAAAAACATATGGCTATACATAACAAAAACGAGAACTACAATGTATGACTAGTACTACAACAGGCACTTACAAGTCTAAACCCTTACAGGAAAAACAACACTCTACCCCTACCAACCTTCTACCCTAATAGCAACCTCCACTCCTTCCTAGCTAGAGTTATCCGTCATAGTTCGTACAAGTTATACGGAAATTAATACATGGATAATGTGTCTTTTATCCAGGCAACCCTTTTATGCTTACATGAATTTGATGAATATGCTTTATTGTTTGCCAGAATTGTCATGTACTAGGAAACAAAAATTTAAGTTTATGATTGGATTTGCTGGTTATTTTGGTATTTAGCTCCTTGCAATAATCCCTCTTGTATTATCCTTACCATTTGCATATTGAATTCATTTCATATGTACATAATATCCAACTAATAGTGTTGGATTCTTATGAGGTGATCTATCCATGTAAGTGTAGTGAAAGAAGTTGTAATTGACCAGTCTTTATTCTGTTGTAGATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAAGTAAGTTGGAATTAAGTTTTTATGAATTGTTCTTTATTTGTGTAGTTTCCTTTTTCTTTTTATTTCCCTTTTGAAACTTGTTGTATGTCAAGGATTTCATGGATGTTGTTTGTTAAGGCTGGTACTTGAAGAGTTCGTCTACGTGGATTCGTTCATTCAATGAGAGCATAACAACTTCTCATTTATTATGTGTATTTCGACTGCGTTCCACCTTTTCTTGGGAGCTTTGGATATGAAACATGTGATTCTTGAATATTATTATTCAGACTTCGATTATATTCTTGTGCTGAATTGAATTCAACTCCTACTTGTAATTTTGATTTGACAATAGGATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGCTAAGGTAACCATAAGTGTTCCTCCTCCTCTTAAATGATTGATAATTTCCATGTTTACTTAAAACTTTTGCAGCACTTCCGTACAACTCTTAGATGTCTGAAGTTCTGGGCCAAAAGACGTTGTGTTTATTCCAATGTGAGTTCTTAGTCCCTCGAACCATCTCAGTGGTAACTCTCTCTCGTATTTCAACTAGTCATTCCTCTTGTTTGGTCAAAATCCTTACCATTAATTTGACATGATGGCGTCATTCTTTAGAAATATCCCAATCTGATCATGATTTTCTGTTTTGCCTCTTTTGTGCTTCTTATTCAGGTTACTGGATTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTGCTCGCATTTGCCAGTTTTACCCAAATGCAATCCCTAGTATGCTTGTTTCTAGGTTCTTCCGTGTTTATACACAATGGCGTTGGCCAAATCCTGTGATGTTATGCCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCAAGAATCCTAAAGACAGAACTCATCATATGCCAATCATCACTCCTGCCTACCCTTGCATGAACTCTAGCTATAACGTCTCACCAAGCACTCTTCGAGTAATGATGGACCAATTTCAGATTGGTAACAAGATTTCTGAGGTAAGCTATAAAGGTTCAGTGTTTATTCTCTCCCTTTCTTCTTGTAACAAATTTTAGCAAGTAGTGCTGATGTTTTTAGCTTATTCTTTGTCCAGGATGTGGAGTTGAATAAATCACAGTGGCCTGCTCTTTTTGAGCATTATTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTAGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAAAGGTGAAAGTTCGGTAGTTTTTTTTAGTTAACTCAGGTTGATGAGAATTGTTAGCACAGAAAGATAAAGTCCGGGAGGGAAAGATCTAATTTCCTTGTCCTTTTTCTTATTCTAGTGATGTAATGTGTAGTTTCGGTTGATGCTTTGCAGATAGAGCGGGACACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCAAAGCCATGCCCGCATTGTGTTTTTTTCATGGGTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTTCAGCCGTGTGGGGTGGATGTTGAAGTGATAAACGGATAGTGCATGAACTACACTACAAATCCAGCAGCAGGGGTTAAAGGCAGCACAGCATAATCAAGATTTTCCCCAGACAACAAAAATCAACAGCAAGAGAGAGTAGAACTAGAAAGCAGCACCAGAGTCCAGCAGCATAGCTATTGAGGTGAGGTAAGTTTCAAAATTTGAAAGAGAGAGAACATGGATGGTGAAAAGACTGAATTTGTAAATGGCTATATTAGCACTTTGTTTAGAGGGTTGTTT</genome_strand>
        <mrna_strand>ACTGAATATTCCTTCAATCAAATTTATTATAGCTTTCATATTCATACTGGATTGAAAAAATTCTCATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGGTGAGTTCCGAGAGCTTAAGTGAGTCTGTTGCACCACCAACAATGAAATATGGTATCACAAAGCCATTATCTCTTGCTGGACCGACTGAGGCAGATCTTCAAAGAAATGCAGAACTGGAAAAG.........................................................................................................TTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTCGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGGATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA...........................................................................................................................................................................................................................................................................................................................................GATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTGAATGGTTGTCGAGTTGCTGATAGAATACTGAAACTAGTTCCCAATGCTAAGGTAACCATCAGTGTTCCTCCTTCTCTTAAATGATTGATCATTTCCATGTTTACTTAAAACTTTTGCAGCACTTCCGTACAACTCTTAGATGTCTGAAGTTCTGGGCCAAAAGACGTGGTGTTTATTCCAAT.................................................................................................................................................................................GTTACTGGATTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTGCTCGCATTTGCCAGTTTTACCCAAATGCAATCCCTAGTATGCTTGTTTCTAGGTTCTTCCGTGTTTATACACAATGGCGTTGGCCAAATCCTGTGATGTTATGCCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCAAGAATCCTAAAGACAGAACTCATCATATGCCAATCATCACTCCTGCCTACCCTTGCATGAACTCTAGCTATAACGTCTCACCAAGCACTCTTCGAGTAATGATGGACCAATTTCAGATTGGTAACAAGATTTGTGAG...............................................................................................GATGTGGAGTTGAATAAATCACAGTGGCCTTCTCTTTTTGAGCATTACTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTGGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAAAG....................................................................................................................................................ATAGAGCGGGATACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCGAAGCCATGCCCGCATTGTGCTTTTTTCATGGGTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGTGGAACAGTCGATGAGTTTAAGCAAGATGTAAACATGTACTCTTATTGGATACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCTCCCGCAAGTGTTTCTAGTCGGACAGGCGGATCATCACAGATGATCATTCCCGAGGAGTCACTCCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAAGAAGGTTTTCTTGACCAATCCAACGTAACATTCTACCGTAGCCAGGAGGCGCTTAGTACTTGTGAACAATGTCTAAGAGGTGCCCCAGCATCGCAGACTATACAGGATGACAAAAAGGTGGACGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTTCGGTGAGTTTTTGACTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATAC--AAGACTTGATTTCAGCTGTGTGGGGTGGATGTCGAAGTGATAAACGGATAGTGCATGAACTACACTACAAATCCAGCAGCAGGGGTTAAAGGCAGCACAGCATAATCAAGATTTTCCCCAGACAACAAAAATCAACATTAAGAGAGAGTAGAACTAGAAAGCAGCACCAGAGTCCAGCAGCATAGCTATTGAGGTGAGGTAAGTTTCAAAATTTGAAAGAGAGAGAACATGGATGGTGAAAAGACTGAATTTGTAGAAGGCTATATTAGCACTTTGTTTAGAGGGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706157" ref_strand="+" ref_description="SGN-E706157 [FA29AF12]">
      <seq>gatcatcacagataatcattcccgaggagtcacttcaggaggttaagactgctggccttcaaaaccaaagttctgatgataaatcaacagaggatactggggagcagaaaccatgcatttctgagtgaaatgaaaattccagcctgatagtttagtcatcacctcatcaaggaacttgttgggagttataaaacaaggttttcttgaccagtccaacataacattcttccgtagccaggaggcgctttgtacttgtgaacaatgttctagaggtgccccagcttcgcagactatacaggatgacaaaaaggtggatgacgatgatgatgagcagccagctcgattgaccaggtatacaaacttgaggtgggtggatggtgtgaaggagttgaaatgtgctcgcatcaaattccaaaattcaaaacctcttgaggagttccggtgagtttttgattcacgagtagtggccgatggcagtgagagactggaagctttgagtcgttgcaggatgatacaaaagactagatttcagccgtgtggggtggatgttgaagtgataaacggatagtgcatgaactacactacaaatccagcagcaggggttaaaggcagcacagcataatcaagattttccccagacaacaaaaatcaacagcaagagagagtagaactagaaagcagcaccagagtccagcagcatagctattgaggtgaggtaagtttcaaaatttgaaagagagagaacatggatggtgaaaagactgaatttgtaaatggctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="61056" stop="59675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60756" g_stop="59975" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E706157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60756" e_stop="59975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTTCAGCCGTGTGGGGTGGATGTTGAAGTGATAAACGGATAGTGCATGAACTACACTACAAATCCAGCAGCAGGGGTTAAAGGCAGCACAGCATAATCAAGATTTTCCCCAGACAACAAAAATCAACAGCAAGAGAGAGTAGAACTAGAAAGCAGCACCAGAGTCCAGCAGCATAGCTATTGAGGTGAGGTAAGTTTCAAAATTTGAAAGAGAGAGAACATGGATGGTGAAAAGACTGAATTTGTAAATGGCTATA</genome_strand>
        <mrna_strand>GATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTTCAGCCGTGTGGGGTGGATGTTGAAGTGATAAACGGATAGTGCATGAACTACACTACAAATCCAGCAGCAGGGGTTAAAGGCAGCACAGCATAATCAAGATTTTCCCCAGACAACAAAAATCAACAGCAAGAGAGAGTAGAACTAGAAAGCAGCACCAGAGTCCAGCAGCATAGCTATTGAGGTGAGGTAAGTTTCAAAATTTGAAAGAGAGAGAACATGGATGGTGAAAAGACTGAATTTGTAAATGGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738736" ref_strand="+" ref_description="SGN-E738736 [LC14DC05]">
      <seq>gtttgcagaggcaaaagggtgtcaaagtacaagaaggtcaacggtttgatatccgcggaacagtcgatgagtttaagcaagaggtaaacatgtactcttattggagaccgggcatggatatctatatctcgcatgttcctaggagggaaattcctgcttatgtctttcctgatgggtataagagaccacgtcaatctagaaatacaactcagcatactcccgagaaagatgccaaaggttgcatgtcttctgaaggaaggcgttcaaagaggaagcaggaaacccatacagttgatgtagagtccgacaaactgccgaaacgtgcttctattagtcctcaaaatataggatctgtttcgcccgcaagtgtttctagtcggtcaggcggatcatcacagataatcattcccgaggagtcacttcaggaggttaagactgctggccttcaaaaccaaagttctgatgataaatcaacagaggatactggggagcagaaaccatgcatttctgagtgaaatgaaaattccagcctgatagtttagtcatcacctcatcaaggaacttgttgggagttataaaacaaggttttcttgaccagtccaacataacattcttccgtagccaggaggcgctttgtacttgtgaacaatgttctagaggtgccccagcttcgcagactatacaggatgacaaaaaggtggatgacgatgatgatgagcagccagctcgattgaccaggtatacaaacttgaggtgggtggatggtgtgaaggagttgaaatgtgctcgcatcaaattccaaaattcaaaacctcttgaggagttccggtgagtttttgattcacgagtagtggccgatggcagtgagagactggaagctttgagtcgttgcaggatgatacaaaagactagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="61443" stop="59928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61143" g_stop="60228" g_length="916"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="916" r_length="916" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E738736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61143" e_stop="60228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTT</genome_strand>
        <mrna_strand>GTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738743" ref_strand="+" ref_description="SGN-E738743 [LC14DD04]">
      <seq>gtttgcagaggcaaaagggtgtcaaagtacaagaaggtcaacggtttgatatccgcggaacagtcgatgagtttaagcaagaggtaaacatgtactcttattggagaccgggcatggatatctatatctcgcatgttcctaggagggaaattcctgcttatgtctttcctgatgggtataagagaccacgtcaatctagaaatacaactcagcatactcccgagaaagatgccaaaggttgcatgtcttctgaaggaaggcgttcaaagaggaagcaggaaacccatacagttgatgtagagtccgacaaactgccgaaacgtgcttctattagtcctcaaaatataggatctgtttcgcccgcaagtgtttctagtcggtcaggcggatcatcacagataatcattcccgaggagtcacttcaggaggttaagactgctggccttcaaaaccaaagttctgatgataaatcaacagaggatactggggagcagaaaccatgcatttctgagtgaaatgaaaattccagcctgatagtttagtcatcacctcatcaaggaacttgttgggagttataaaacaaggttttcttgaccagtccaacataacattcttccgtagccaggaggcgctttgtacttgtgaacaatgttctagaggtgccccagcttcgcagactatacaggatgacaaaaaggtggatgacgatgatgatgagcagccagctcgattgaccaggtatacaaacttgaggtgggtggatggtgtgaaggagttgaaatgtgctcgcatcaaattccaaaattcaaaacctcttgaggagttccggtgagtttttgattcacgagtagtggccgatggcagtgagagactggaagctttgagtcgttgcaggatgatacaaaagactagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="61443" stop="59929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61143" g_stop="60229" g_length="915"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="915" r_length="915" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E738743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61143" e_stop="60229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATT</genome_strand>
        <mrna_strand>GTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366242" ref_strand="+" ref_description="SGN-E366242 [cLPT-1-I20]">
      <seq>atttcagattggtaacaagatttgtgaggatgtggagttgaataaatcacagtggccttctctttttgagcattactttttctttgaggcgtacaaaaactatctccaggttgaaatcgtggcagcagataatgatgatttgctagcttggaaaggctgggtggaatcacggcttcgacaactcacgctaaagatagagcgggataccaatgggacgttgcagtgccatccttatcctaatgaatttgcggacatgtcgaagccatgcccgcattgtgcttttttcatgggtttgcagaggcaaaagggtgtcaaagtacaagaaggtcaacggtttgatatccgtggaacagtcgatgagtttaagcaagatgtaaacatgtactcttattggataccgggcatggatatctatatctcgcatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="61976" stop="60706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61676" g_stop="61649" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61648" i_stop="61554" i_length="95">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61553" g_stop="61389" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="193" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61388" i_stop="61241" i_length="148">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61240" g_stop="61006" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="428" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E366242" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61676" e_stop="61649"/>
          <exon e_start="61553" e_stop="61389"/>
          <exon e_start="61240" e_stop="61006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGATTGGTAACAAGATTTCTGAGGTAAGCTATAAAGGTTCAGTGTTTATTCTCTCCCTTTCTTCTTGTAACAAATTTTAGCAAGTAGTGCTGATGTTTTTAGCTTATTCTTTGTCCAGGATGTGGAGTTGAATAAATCACAGTGGCCTGCTCTTTTTGAGCATTATTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTAGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAAAGGTGAAAGTTCGGTAGTTTTTTTTAGTTAACTCAGGTTGATGAGAATTGTTAGCACAGAAAGATAAAGTCCGGGAGGGAAAGATCTAATTTCCTTGTCCTTTTTCTTATTCTAGTGATGTAATGTGTAGTTTCGGTTGATGCTTTGCAGATAGAGCGGGACACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCAAAGCCATGCCCGCATTGTGTTTTTTTCATGGGTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTC</genome_strand>
        <mrna_strand>ATTTCAGATTGGTAACAAGATTTGTGAG...............................................................................................GATGTGGAGTTGAATAAATCACAGTGGCCTTCTCTTTTTGAGCATTACTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTGGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAAAG....................................................................................................................................................ATAGAGCGGGATACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCGAAGCCATGCCCGCATTGTGCTTTTTTCATGGGTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGTGGAACAGTCGATGAGTTTAAGCAAGATGTAAACATGTACTCTTATTGGATACCGGGCATGGATATCTATATCTCGCATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557862" ref_strand="+" ref_description="SGN-E557862 [16728]">
      <seq>atttcttggtggggtgaattgggctcttttggttgctcgcatttgccagttttacccaaatgcaatccctagtatgcttgtttctaggttcttccgtgtttatacacaatggcgttggccaaatcctgtgatgttatgcccaatagaagaggatgaacttgggtttcttgtttgggatccgcgcaagaatcctaaagacagaactcatcatatgccaatcatcactcctgcctacccttgcatgaactctagctataacgtctcaccaagcactcttcgagtaatgatggaccaatttcagattggtaacaagatttgtgaggatgtggagttgaataaagcacagtggcctgctctttttgagcattattttttctttgaggcgtacaaaaactatctccaggttgaaatcgtagcagcagataatgatgatttgctagcttggaaaggatgggtggaatcacggcttcgacaactcacactaacagatagagcgggacaccaatgggacgttgcagtgccatccttatctaatgaatttgtggacatgtcgaagccatgccctcattgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="62270" stop="60856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61970" g_stop="61649" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61648" i_stop="61554" i_length="95">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61553" g_stop="61389" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="488" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61388" i_stop="61241" i_length="148">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61240" g_stop="61155" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="573" r_length="85" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E557862" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61970" e_stop="61649"/>
          <exon e_start="61553" e_stop="61389"/>
          <exon e_start="61240" e_stop="61155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTGCTCGCATTTGCCAGTTTTACCCAAATGCAATCCCTAGTATGCTTGTTTCTAGGTTCTTCCGTGTTTATACACAATGGCGTTGGCCAAATCCTGTGATGTTATGCCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCAAGAATCCTAAAGACAGAACTCATCATATGCCAATCATCACTCCTGCCTACCCTTGCATGAACTCTAGCTATAACGTCTCACCAAGCACTCTTCGAGTAATGATGGACCAATTTCAGATTGGTAACAAGATTTCTGAGGTAAGCTATAAAGGTTCAGTGTTTATTCTCTCCCTTTCTTCTTGTAACAAATTTTAGCAAGTAGTGCTGATGTTTTTAGCTTATTCTTTGTCCAGGATGTGGAGTTGAATAAATCACAGTGGCCTGCTCTTTTTGAGCATTATTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTAGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAA-AGGTGAAAGTTCGGTAGTTTTTTTTAGTTAACTCAGGTTGATGAGAATTGTTAGCACAGAAAGATAAAGTCCGGGAGGGAAAGATCTAATTTCCTTGTCCTTTTTCTTATTCTAGTGATGTAATGTGTAGTTTCGGTTGATGCTTTGCAGATAGAGCGGGACACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCAAAGCCATGCCCGCATTGTGT</genome_strand>
        <mrna_strand>ATTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTGCTCGCATTTGCCAGTTTTACCCAAATGCAATCCCTAGTATGCTTGTTTCTAGGTTCTTCCGTGTTTATACACAATGGCGTTGGCCAAATCCTGTGATGTTATGCCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCAAGAATCCTAAAGACAGAACTCATCATATGCCAATCATCACTCCTGCCTACCCTTGCATGAACTCTAGCTATAACGTCTCACCAAGCACTCTTCGAGTAATGATGGACCAATTTCAGATTGGTAACAAGATTTGTGAG...............................................................................................GATGTGGAGTTGAATAAAGCACAGTGGCCTGCTCTTTTTGAGCATTATTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTAGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGATGGGTGGAATCACGGCTTCGACAACTCACACTAACAG....................................................................................................................................................ATAGAGCGGGACACCAATGGGACGTTGCAGTGCCATCCTTAT-CTAATGAATTTGTGGACATGTCGAAGCCATGCCCTCATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314197" ref_strand="+" ref_description="SGN-E314197 [cTOA-21-N18]">
      <seq>ttttattccccaacttaaatctggttcacatgtaagttatttagaatctgaatggttcattcgtccactatcttgaggttctggctcaacaaatgcataagttggtaacacatactccttgcaggttcatggaccaggagctgacctggacacattgtgtgttggtccctgctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagtttgtgaacttcaaccagttcctgatgctcatgtccctgttatgaaattcaaatttcaaggaatttcaattgatcttctttatgcaagtataactctcttggttattcctgaagatttggatatctcagaccaatctgtactctgtaatgtggatggaccaactgttcgaagtctaaatggttgtcgagttgctgatcgaatactgaaactagttcccaatgctaaggtaaccataagtgttcctcctcctcttaaatgattgataatttccatgtttacttaaaacttttgcagcacttccgtacaactcttagatgtctgaaagtctgggccaaaagacgttgtgtttattccaatgttactggattttcttgggggggtgaattgggctcttttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="63495" stop="61636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63195" g_stop="63009" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62893" g_stop="62732" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="349" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62400" g_stop="62156" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="594" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62155" i_stop="61979" i_length="177">
            <donor d_prob="0.800" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61978" g_stop="61936" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="638" r_length="44" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E314197" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63195" e_stop="63009"/>
          <exon e_start="62893" e_stop="62732"/>
          <exon e_start="62400" e_stop="62156"/>
          <exon e_start="61978" e_stop="61936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAAGTAAGTTGGAATTAAGTTTTTATGAATTGTTCTTTATTTGTGTAGTTTCCTTTTTCTTTTTATTTCCCTTTTGAAACTTGTTGTATGTCAAGGATTTCATGGATGTTGTTTGTTAAGGCTGGTACTTGAAGAGTTCGTCTACGTGGATTCGTTCATTCAATGAGAGCATAACAACTTCTCATTTATTATGTGTATTTCGACTGCGTTCCACCTTTTCTTGGGAGCTTTGGATATGAAACATGTGATTCTTGAATATTATTATTCAGACTTCGATTATATTCTTGTGCTGAATTGAATTCAACTCCTACTTGTAATTTTGATTTGACAATAGGATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGCTAAGGTAACCATAAGTGTTCCTCCTCCTCTTAAATGATTGATAATTTCCATGTTTACTTAAAACTTTTGCAGCACTTCCGTACAACTCTTAGATGTCTGAAGTTCTGGGCCAAAAGACGTTGTGTTTATTCCAATGTGAGTTCTTAGTCCCTCGAACCATCTCAGTGGTAACTCTCTCTCGTATTTCAACTAGTCATTCCTCTTGTTTGGTCAAAATCCTTACCATTAATTTGACATGATGGCGTCATTCTTTAGAAATATCCCAATCTGATCATGATTTTCTGTTTTGCCTCTTTTGTGCTTCTTATTCAGGTTACTGGA-TTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTG</genome_strand>
        <mrna_strand>TTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA...........................................................................................................................................................................................................................................................................................................................................GATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGCTAAGGTAACCATAAGTGTTCCTCCTCCTCTTAAATGATTGATAATTTCCATGTTTACTTAAAACTTTTGCAGCACTTCCGTACAACTCTTAGATGTCTGAAAGTCTGGGCCAAAAGACGTTGTGTTTATTCCAAT.................................................................................................................................................................................GTTACTGGATTTTCTTGGGGGGGTGAATTGGGCTCTTTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592479" ref_strand="+" ref_description="SGN-E592479 [46214]">
      <seq>caacaaacaacaataacaacatactcagtcaaatcccacaaatgtgtgatggtgagttccgagagcttaagtgagtctgctgcaccaccaccaatgaaatatggtgtcacaaagccattatctcttgctgggccgactgaggcagatcttcaaagaaatgcagaactagaaaagtttttgagggaatcagtattgtatgagagtgaggaagagactgcaaggagagaagaagtactgcagcgacttgatgagattgtaaaacaatgggtgaaacaattgactcgccagagaggctacccagatcaaatggttgaggatgcaaatgctatcatagtcacctttggctcttatcgtctaggggttcatggaccaggagctgatgttgacacattgtgtgttggtccctcctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagttcgtgaacttcaaccagttcccgatgctcatgtccctgttatgaaattcaaatttcaagggatatcaattgatcttctttatgcaagtataactctcttggttattcctgaagatttggatatctcaggaccaatctatactctataacgtggatggaccaactgttcgaagtctgaatggttgccgagttgctgatcaaatactgaaactagtttcccaatgctaaggtaaccatcaagtgttcctccctttcccttaaattgattgatcattttcccatgttttactttaaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="65774" stop="61960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65624" g_stop="65580" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65579" i_stop="65474" i_length="106">
            <donor d_prob="0.873" d_score="0.84"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65473" g_stop="65344" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="174" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65238" g_stop="65161" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="252" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65160" i_stop="64212" i_length="949">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64211" g_stop="64104" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="360" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="423" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62893" g_stop="62732" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="585" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331">
            <donor d_prob="0.730" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62400" g_stop="62287" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="701" r_length="116" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E592479" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65624" e_stop="65580"/>
          <exon e_start="65473" e_stop="65344"/>
          <exon e_start="65238" e_stop="65161"/>
          <exon e_start="64211" e_stop="64104"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62732"/>
          <exon e_start="62400" e_stop="62287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAACAACAGTAACAACATACTCGGTGAAATCCCGTGAAGTGGTTTGTATTTCAATTGTTAAATGATGTGTAAAGCTTATTTTATGCTAATCTGAAGTTTGGGAACTCAGACTGGTATTCTTTTTGGGTTGTTTCCTTTTGTTGTCAGTGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAGGTAGTTCTTTTCTTTTCTTATATATTTTGTTCTAGGATTGTCTGAGTTGATTTCACTTGAATCATGAATTTGTATTGACTTTTGGGTTTTATGGTGATGGGGTAGTTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAGGTAATTGAACCACATTAATTACTTTAACAATTTGGATTATGAGAGAATAGATGGATTATTTTATATAGTTATTAGTTATGTAGAGATTAGTTATTCATGTACTTAGTTATGCTGATTTCTATATTGTCAACCAAACGTCATATTAATTCTATACCAAAAATAACTTATTTCATATCTACCTTTCATACGTTGTACAACAACAACATACTTAGTCCCACTAAAGGGGATTTGGAGAGGGTAGAGGGTATCTAGACCTTATCACTACCTTGTGGAGATAGAGAGACCGTCTTCGAAAGACCCTTAGCTCAAGTGTATCAAACCCAAGTAAAAGAAGAGGAAAACAGTGAAGAAAACAGAACATTTAATAAGAAAAAGCAGTGTACAATCGACAGAAGGAGCAATAACAACAACAAAATAGCGTGGGAAGTGAAATGCAAAAAAAAAAAAAACATATGGCTATACATAACAAAAACGAGAACTACAATGTATGACTAGTACTACAACAGGCACTTACAAGTCTAAACCCTTACAGGAAAAACAACACTCTACCCCTACCAACCTTCTACCCTAATAGCAACCTCCACTCCTTCCTAGCTAGAGTTATCCGTCATAGTTCGTACAAGTTATACGGAAATTAATACATGGATAATGTGTCTTTTATCCAGGCAACCCTTTTATGCTTACATGAATTTGATGAATATGCTTTATTGTTTGCCAGAATTGTCATGTACTAGGAAACAAAAATTTAAGTTTATGATTGGATTTGCTGGTTATTTTGGTATTTAGCTCCTTGCAATAATCCCTCTTGTATTATCCTTACCATTTGCATATTGAATTCATTTCATATGTACATAATATCCAACTAATAGTGTTGGATTCTTATGAGGTGATCTATCCATGTAAGTGTAGTGAAAGAAGTTGTAATTGACCAGTCTTTATTCTGTTGTAGATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAAGTAAGTTGGAATTAAGTTTTTATGAATTGTTCTTTATTTGTGTAGTTTCCTTTTTCTTTTTATTTCCCTTTTGAAACTTGTTGTATGTCAAGGATTTCATGGATGTTGTTTGTTAAGGCTGGTACTTGAAGAGTTCGTCTACGTGGATTCGTTCATTCAATGAGAGCATAACAACTTCTCATTTATTATGTGTATTTCGACTGCGTTCCACCTTTTCTTGGGAGCTTTGGATATGAAACATGTGATTCTTGAATATTATTATTCAGACTTCGATTATATTCTTGTGCTGAATTGAATTCAACTCCTACTTGTAATTTTGATTTGACAATAGGATTTGGATATCTCA-GACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAG-TTCCCAATGCTAAG</genome_strand>
        <mrna_strand>CAACAAACAACAATAACAACATACTCAGTCAAATCCC-ACAAATG..........................................................................................................TGTGATGGTGAGTTCCGAGAGCTTAAGTGAGTCTGCTGCACCACCACCAATGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGGCCGACTGAGGCAGATCTTCAAAGAAATGCAGAACTAGAAAAG.........................................................................................................TTTTTGAGGGAATCAGTATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCAGCGACTTGATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACCCAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGACCAGGAGCTGATGTTGACACATTGTGTGTTGGTCCCTCCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTCGTGAACTTCAACCAGTTCCCGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGGATATCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA...........................................................................................................................................................................................................................................................................................................................................GATTTGGATATCTCAGGACCAATCTATACTCTATAACGTGGATGGACCAACTGTTCGAAGTCTGAATGGTTGCCGAGTTGCTGATCAAATACTGAAACTAGTTTCCCAATGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439830" ref_strand="+" ref_description="SGN-E439830 [cSTA-13-N23]">
      <seq>ctgcggcgacttgacgagattgtaaaacaatgggtcaaacaattgactcgccagagaggctacacagatcaaatggttgaggatgcaaatgctatcatagtcacctttggctcttatcgtctaggggttcatggaccaggagctgacgttgacacattgtgtgttggtccctcctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagttcgtgaacttcaaccagttcctgatgctcatgtccctgttatgaaattcaaatttcaagggatatcaattgatcttctttatgcaagtataactctcttggttattcctgaagatttggatatctcagaccaatctatactctataatgtggatggaccaactgttcgaagtctgaatggttgccgagttgctgatcaaatactgaaactagttcccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="64523" stop="61991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64211" g_stop="64104" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="126" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="189" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62893" g_stop="62732" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="351" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331">
            <donor d_prob="0.730" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62400" g_stop="62291" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="461" r_length="110" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E439830" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64211" e_stop="64104"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62732"/>
          <exon e_start="62400" e_stop="62291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAAGTAAGTTGGAATTAAGTTTTTATGAATTGTTCTTTATTTGTGTAGTTTCCTTTTTCTTTTTATTTCCCTTTTGAAACTTGTTGTATGTCAAGGATTTCATGGATGTTGTTTGTTAAGGCTGGTACTTGAAGAGTTCGTCTACGTGGATTCGTTCATTCAATGAGAGCATAACAACTTCTCATTTATTATGTGTATTTCGACTGCGTTCCACCTTTTCTTGGGAGCTTTGGATATGAAACATGTGATTCTTGAATATTATTATTCAGACTTCGATTATATTCTTGTGCTGAATTGAATTCAACTCCTACTTGTAATTTTGATTTGACAATAGGATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGC</genome_strand>
        <mrna_strand>ATTGTAAAACAATGGGTCAAACAATTGACTCGCCAGAGAGGCTACACAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGACCAGGAGCTGACGTTGACACATTGTGTGTTGGTCCCTCCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTCGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGGATATCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA...........................................................................................................................................................................................................................................................................................................................................GATTTGGATATCTCAGACCAATCTATACTCTATAATGTGGATGGACCAACTGTTCGAAGTCTGAATGGTTGCCGAGTTGCTGATCAAATACTGAAACTAGTTCCCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280666" ref_strand="-" ref_description="SGN-E280666 [cLEL-6-E19](-)">
      <seq>gcacgagggctacatagatcaaatggttgaggatgcaaatgctatcatagtcgcgctttggctcttatcgtctacgggctcatggaccaggagctgacctggacacattgtgtgttggtccctgctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagtttgtgaacttcaaccagttcctgatgctcatgtccctgttatgaaattcaaatttcaaggaatttcaattgatcttctttatgcaagtataactctcttggttattcctgaagatttggatatctcagaccaatctgtactctgtaatgtggatggaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="64478" stop="62052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64180" g_stop="64104" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="140" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62893" g_stop="62732" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="302" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62400" g_stop="62352" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="351" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E280666" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280666" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64180" e_stop="64104"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62732"/>
          <exon e_start="62400" e_stop="62352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCAC-CTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAAGTAAGTTGGAATTAAGTTTTTATGAATTGTTCTTTATTTGTGTAGTTTCCTTTTTCTTTTTATTTCCCTTTTGAAACTTGTTGTATGTCAAGGATTTCATGGATGTTGTTTGTTAAGGCTGGTACTTGAAGAGTTCGTCTACGTGGATTCGTTCATTCAATGAGAGCATAACAACTTCTCATTTATTATGTGTATTTCGACTGCGTTCCACCTTTTCTTGGGAGCTTTGGATATGAAACATGTGATTCTTGAATATTATTATTCAGACTTCGATTATATTCTTGTGCTGAATTGAATTCAACTCCTACTTGTAATTTTGATTTGACAATAGGATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAA</genome_strand>
        <mrna_strand>GCACGAG-GGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCGCGCTTTGGCTCTTATCGTCTACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA...........................................................................................................................................................................................................................................................................................................................................GATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280796" ref_strand="-" ref_description="SGN-E280796 [cLEL-6-F19](-)">
      <seq>gcacgagggctacatagatcaaatggtttaggatgcaaatgctatcatagtgaggtttggctcttatcgtctaggggtccctggaccaggagctgacctggacacattgtgtgttggtccctgctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagtttgtgaacttcaaccagttcctgatgctcatgtccctgttatgaaattcaaatttcaaggaatttcaattgatcttctttatgcaagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="64478" stop="62453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64180" g_stop="64104" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="139" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62893" g_stop="62753" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="280" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E280796" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280796" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64180" e_stop="64104"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATA</genome_strand>
        <mrna_strand>GCACGAG-GGCTACATAGATCAAATGGTTTAGGATGCAAATGCTATCATAGTGAGGTTTGGCTCTTATCGTCTAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366571" ref_strand="+" ref_description="SGN-E366571 [cLPT-13-G24]">
      <seq>ttcaatcaaatttattatagctttcatatgcatactggattgaaaaaattctcatttttctcattccaattttgttttctggttcagtatttcatcggttcagtgatctgtgaagtttagcagctcttatgtttgatggcgagttccgagagcttaagtgagtctgttgcaccaccaacaatgaaatatggtatcacaaagccattatctcttgctggaccgactgaggcagatcttcaaagaaatgcagaactggaaaagtttttgagggaatcagaattgtatgagagtgaggaagagactgcccggagagaagaagtactgcggcgacttgaccaggttcatggaccaggagctgacctggacacattgtgtgttggtccctgctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatggaagaagttcgtgaacttcaaccagttcctgatgctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="66880" stop="62512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66580" g_stop="66451" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66450" i_stop="65474" i_length="977">
            <donor d_prob="0.254" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65473" g_stop="65344" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="261" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65238" g_stop="65161" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="339" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65160" i_stop="63072" i_length="2089">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="402" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62893" g_stop="62812" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="484" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E366571" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66580" e_stop="66451"/>
          <exon e_start="65473" e_stop="65344"/>
          <exon e_start="65238" e_stop="65161"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAAATTTATTATAGCTTTCATATTCATACTGAATTG-AAAAATTCTTATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATGGTAATCTGAATTCTGGGTAACTCTATTTAGTCATTTTCTTCTCTGGGTTTTTTGTTTTGCTGTTTAATTTTGTTTATTGAGTTGAAAAATCTGTTTTTTTCTTTCGATTTTTGGTTCTGCATTTGATTGGTTTAGTAATCAGTGATCTGTGAAGTTCAGTTTGTATGCTAATCTGAATTATGGGTAACTTGACTGGTTTTTATCTGCTCTAGGGTTTTTCTTTTTCAATTTCTGTTCTTAGAGTTTGAAAAATCCTCTATATTTTCCGTTTCTAGCTCCGCATTTTATTGGTTTAGGATCAGTGAAGTTCAGGTTCTATGTTAATTTGAATTCTGGGTAATTCGATTGGTTTTTTCCTGTTCTGGGTTTTTTTGCCTTTGAAATTTTTGTTCATAGAGTTGAAAAAGATCCCCCCTTTTACCTTTTCTGGTTTGCATTTGATGGTTCAGTGATCTGTGAAGTTCAGCTTCTATGCTAATTTGAATTCTGAGTAGCTCCACTGGTCTTTTTCGCTTTTTTTTTTCAATTTCTGTTCATAAAGTTGAAAAATTCTCTGTATTTTCCTTTTCTGGTTCCGCATTTGATTGGTGCAGTGATCTGTGAAATTTAGCTTCTACTCTAATCTGAATTTTGGTTACTCGTGGGTTTTTCATACAATTTCTGTTCCTTCATAGTTAAAAAATTCTCCGTTTTTTTTTTTTGGTTTTCTGGTTCGGTGTTTGTTCGGTTCAGTGATATGTGAAGTTTAGGTTTTATGCTAATTTGAGTTCTGGTAACTTGACTGGCCTTTTTCATTTGATTGTTCTGGTTCTGCATTTCATCAGTTCAACAAACAACAGTAACAACATACTCGGTGAAATCCCGTGAAGTGGTTTGTATTTCAATTGTTAAATGATGTGTAAAGCTTATTTTATGCTAATCTGAAGTTTGGGAACTCAGACTGGTATTCTTTTTGGGTTGTTTCCTTTTGTTGTCAGTGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAGGTAGTTCTTTTCTTTTCTTATATATTTTGTTCTAGGATTGTCTGAGTTGATTTCACTTGAATCATGAATTTGTATTGACTTTTGGGTTTTATGGTGATGGGGTAGTTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAGGTAATTGAACCACATTAATTACTTTAACAATTTGGATTATGAGAGAATAGATGGATTATTTTATATAGTTATTAGTTATGTAGAGATTAGTTATTCATGTACTTAGTTATGCTGATTTCTATATTGTCAACCAAACGTCATATTAATTCTATACCAAAAATAACTTATTTCATATCTACCTTTCATACGTTGTACAACAACAACATACTTAGTCCCACTAAAGGGGATTTGGAGAGGGTAGAGGGTATCTAGACCTTATCACTACCTTGTGGAGATAGAGAGACCGTCTTCGAAAGACCCTTAGCTCAAGTGTATCAAACCCAAGTAAAAGAAGAGGAAAACAGTGAAGAAAACAGAACATTTAATAAGAAAAAGCAGTGTACAATCGACAGAAGGAGCAATAACAACAACAAAATAGCGTGGGAAGTGAAATGCAAAAAAAAAAAAAACATATGGCTATACATAACAAAAACGAGAACTACAATGTATGACTAGTACTACAACAGGCACTTACAAGTCTAAACCCTTACAGGAAAAACAACACTCTACCCCTACCAACCTTCTACCCTAATAGCAACCTCCACTCCTTCCTAGCTAGAGTTATCCGTCATAGTTCGTACAAGTTATACGGAAATTAATACATGGATAATGTGTCTTTTATCCAGGCAACCCTTTTATGCTTACATGAATTTGATGAATATGCTTTATTGTTTGCCAGAATTGTCATGTACTAGGAAACAAAAATTTAAGTTTATGATTGGATTTGCTGGTTATTTTGGTATTTAGCTCCTTGCAATAATCCCTCTTGTATTATCCTTACCATTTGCATATTGAATTCATTTCATATGTACATAATATCCAACTAATAGTGTTGGATTCTTATGAGGTGATCTATCCATGTAAGTGTAGTGAAAGAAGTTGTAATTGACCAGTCTTTATTCTGTTGTAGATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATG</genome_strand>
        <mrna_strand>TTCAATCAAATTTATTATAGCTTTCATATGCATACTGGATTGAAAAAATTCTCATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTCTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGGCGAGTTCCGAGAGCTTAAGTGAGTCTGTTGCACCACCAACAATGAAATATGGTATCACAAAGCCATTATCTCTTGCTGGACCGACTGAGGCAGATCTTCAAAGAAATGCAGAACTGGAAAAG.........................................................................................................TTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCCCGGAGAGAAGAAGTACTGCGGCGACTTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTCGTGAACTTCAACCAGTTCCTGATGCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365357" ref_strand="+" ref_description="SGN-E365357 [cLPT-2-D2]">
      <seq>ctgaatattccttcaatcaaatttattatagctttcatattcatactggattgaaaaaattctcatttttctcattccaattttgttttctggttcagtatttcatcggttcagtgatctgtgaagtttagcagcttttatgtttgatggtgagttccgagagcttaagtgagtctgttgcaccaccaacaatgaaatatggtatcacaaagccattatctcttgctggaccgactgaggcagatcttcaaagaaatgcagaactggaaaagtttttgagggaatcagaattgtatgagagtgaggaagagactgcaaggagagaagaagtactgcggcgacttgaccagattgtaaaacaatgggtgaaacaattgactcgccagagaggctacatagatcaaatggttgaggatgcaaatgctatcatagtcacctttggctcttatcgtctaggggttcatggaccaggagctgacctggacacattgtgtgttggtccctgctatgtcaatcgagaagaagatttctttatccttcttcatgatattttagctgaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="66891" stop="62550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66591" g_stop="66451" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66450" i_stop="65474" i_length="977">
            <donor d_prob="0.254" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65473" g_stop="65344" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="272" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65238" g_stop="65161" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="350" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65160" i_stop="64212" i_length="949">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64211" g_stop="64104" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="458" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63071" g_stop="63009" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="521" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62893" g_stop="62850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="565" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E365357" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66591" e_stop="66451"/>
          <exon e_start="65473" e_stop="65344"/>
          <exon e_start="65238" e_stop="65161"/>
          <exon e_start="64211" e_stop="64104"/>
          <exon e_start="63071" e_stop="63009"/>
          <exon e_start="62893" e_stop="62850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATATTCCTTCAATCAAATTTATTATAGCTTTCATATTCATACTGAATTG-AAAAATTCTTATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATGGTAATCTGAATTCTGGGTAACTCTATTTAGTCATTTTCTTCTCTGGGTTTTTTGTTTTGCTGTTTAATTTTGTTTATTGAGTTGAAAAATCTGTTTTTTTCTTTCGATTTTTGGTTCTGCATTTGATTGGTTTAGTAATCAGTGATCTGTGAAGTTCAGTTTGTATGCTAATCTGAATTATGGGTAACTTGACTGGTTTTTATCTGCTCTAGGGTTTTTCTTTTTCAATTTCTGTTCTTAGAGTTTGAAAAATCCTCTATATTTTCCGTTTCTAGCTCCGCATTTTATTGGTTTAGGATCAGTGAAGTTCAGGTTCTATGTTAATTTGAATTCTGGGTAATTCGATTGGTTTTTTCCTGTTCTGGGTTTTTTTGCCTTTGAAATTTTTGTTCATAGAGTTGAAAAAGATCCCCCCTTTTACCTTTTCTGGTTTGCATTTGATGGTTCAGTGATCTGTGAAGTTCAGCTTCTATGCTAATTTGAATTCTGAGTAGCTCCACTGGTCTTTTTCGCTTTTTTTTTTCAATTTCTGTTCATAAAGTTGAAAAATTCTCTGTATTTTCCTTTTCTGGTTCCGCATTTGATTGGTGCAGTGATCTGTGAAATTTAGCTTCTACTCTAATCTGAATTTTGGTTACTCGTGGGTTTTTCATACAATTTCTGTTCCTTCATAGTTAAAAAATTCTCCGTTTTTTTTTTTTGGTTTTCTGGTTCGGTGTTTGTTCGGTTCAGTGATATGTGAAGTTTAGGTTTTATGCTAATTTGAGTTCTGGTAACTTGACTGGCCTTTTTCATTTGATTGTTCTGGTTCTGCATTTCATCAGTTCAACAAACAACAGTAACAACATACTCGGTGAAATCCCGTGAAGTGGTTTGTATTTCAATTGTTAAATGATGTGTAAAGCTTATTTTATGCTAATCTGAAGTTTGGGAACTCAGACTGGTATTCTTTTTGGGTTGTTTCCTTTTGTTGTCAGTGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAGGTAGTTCTTTTCTTTTCTTATATATTTTGTTCTAGGATTGTCTGAGTTGATTTCACTTGAATCATGAATTTGTATTGACTTTTGGGTTTTATGGTGATGGGGTAGTTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAGGTAATTGAACCACATTAATTACTTTAACAATTTGGATTATGAGAGAATAGATGGATTATTTTATATAGTTATTAGTTATGTAGAGATTAGTTATTCATGTACTTAGTTATGCTGATTTCTATATTGTCAACCAAACGTCATATTAATTCTATACCAAAAATAACTTATTTCATATCTACCTTTCATACGTTGTACAACAACAACATACTTAGTCCCACTAAAGGGGATTTGGAGAGGGTAGAGGGTATCTAGACCTTATCACTACCTTGTGGAGATAGAGAGACCGTCTTCGAAAGACCCTTAGCTCAAGTGTATCAAACCCAAGTAAAAGAAGAGGAAAACAGTGAAGAAAACAGAACATTTAATAAGAAAAAGCAGTGTACAATCGACAGAAGGAGCAATAACAACAACAAAATAGCGTGGGAAGTGAAATGCAAAAAAAAAAAAAACATATGGCTATACATAACAAAAACGAGAACTACAATGTATGACTAGTACTACAACAGGCACTTACAAGTCTAAACCCTTACAGGAAAAACAACACTCTACCCCTACCAACCTTCTACCCTAATAGCAACCTCCACTCCTTCCTAGCTAGAGTTATCCGTCATAGTTCGTACAAGTTATACGGAAATTAATACATGGATAATGTGTCTTTTATCCAGGCAACCCTTTTATGCTTACATGAATTTGATGAATATGCTTTATTGTTTGCCAGAATTGTCATGTACTAGGAAACAAAAATTTAAGTTTATGATTGGATTTGCTGGTTATTTTGGTATTTAGCTCCTTGCAATAATCCCTCTTGTATTATCCTTACCATTTGCATATTGAATTCATTTCATATGTACATAATATCCAACTAATAGTGTTGGATTCTTATGAGGTGATCTATCCATGTAAGTGTAGTGAAAGAAGTTGTAATTGACCAGTCTTTATTCTGTTGTAGATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGGGTAAGTAAAAGTTTCAGCGTTTATGGAACTTTCTTGTAGTTAGTTCTTCCGGGAGCAGCTTAATAGAATCCCCTTCTCTGGATGTTAACTATGCTTCAAATCTTCACCTGTAAGATTACATGCCCTCTACTCGGTTTATGTTCGTAGTTTTCTTCTGATTGGAGGTTAGAAATGCTATGCATTATATGGGCCATATGTGAAGTTCAACTTAATAAGATTTTGGACGGCACCTTTAGAAACTGAGTAACAACACTAGTCTAGGACTTCCAATTTATTCCTGTTTTGCAATTAATCTCTAAGTGATCTCATGCTGCTCCATTTTCTGTGCTGCAAGTTTAACCTTGGTTCATAACCAATGGACTTAGATTTGTGCAATATCTCACGGGATTGTTAAGAAGTTGAACTATATTGTCCTAGAATGGAGGCAGTGCTTTTATTTGGGTCTACTTAAGGTGATGAAGGAATTCCATGCGATTGTAGTTCTTGTAATTTAGTTTTACAAAGGTATGGAAATCCATGAAAAACCTGAAACAAAGTTTGAACAGGATGCGTCTTCATTCTGCAGATGGTAAATGTGTTCGGTACTGCTATTTGGGATTAGTAATACGAATCCTCGCTATCCATGGTTACGTCTATCTCAGTCTAATATTCAGCAAGTTAGATTCTTAAACAGTAGAAGTTCTCAACAGTTTGTACTGACACACAAATCTCTAACAACATTAAACACATCTCCGACGGAAGTATTGGATATGCGGGAAAGGGTCAGATTTTCCCACGTGCTCTTCAAAAAAGGTTATATTTACACTTTTGATATATTTCCCGTACCGTCCAACTTTGAGCACATATAAGCCCTTGACCATTAAATCCCTTTTTCCCTAACTTTATTTCCTATGTGGCGTCCACATGAATTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAAGTGAGTACAACCCACTGATCAAATTTTTTGTTGGTTGGTTCAGTGAACATGACATAATTTGATTAAAATTGTTCCTTTTGTGTTTACCCCATCTTTTTTTTATATTACTGTGCAGGAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGA</genome_strand>
        <mrna_strand>CTGAATATTCCTTCAATCAAATTTATTATAGCTTTCATATTCATACTGGATTGAAAAAATTCTCATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGGTGAGTTCCGAGAGCTTAAGTGAGTCTGTTGCACCACCAACAATGAAATATGGTATCACAAAGCCATTATCTCTTGCTGGACCGACTGAGGCAGATCTTCAAAGAAATGCAGAACTGGAAAAG.........................................................................................................TTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA...................................................................................................................GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331283" ref_strand="+" ref_description="SGN-E331283 [cTOD-6-B4]">
      <seq>agtaaaaaatatcatttttttttcactttcccctttgaaaattctgactaatttttgcttctttgattcctctaattcacatgctgtactgtcacgcttgtttttgttattactacaatattccagtttcttctctcacaagaaccaaaaatacaaatctctcttttgtggggttgactcaaatttaacatatatatatgtgtttttttggttttctgattctgttttaagatacccttttgaatttccattgagaaagttggaatcttttttgtattttttgtgtatttggggaagatgggtactgagagtaattaccagatgaaggtggtgaaaggagatcatggttatgttcttgaagatgttcctcatttgactgattatatccctgatcttcctactcatgacaatccattgcggtccaatcctgcatattcagttgtgaagcagtactttgttgacatggatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="67872" stop="70096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68172" g_stop="68570" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69605" g_stop="69651" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="446" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69770" g_stop="69796" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="473" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E331283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68172" e_stop="68570"/>
          <exon e_start="69605" e_stop="69651"/>
          <exon e_start="69770" e_stop="69796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAAAATATCATTTTTTTTTCACTTTCCCCTTTGAAAATTCTGACTAATTTTTGCTTCTTTGATTCCTCTAATTCACATGCTGTACTGTCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCTGTATTGTTCTTGTATTCTCTCTTTTTTCTCTCTCTTAATTTCTGAATGATATTGAGTGTGTTTGTGTTTAGATGTTGTATGTGTGAATCTCTAATTGTTTGATTTTGTCATTTTGTAATGTTGATTGATTCGGTTTGTTTAGTTGTTGCATCTTGTGTTGTTTGTCCTTCATTTGATCCATAACAATGTAGAAAGAAATGTGAAAGAAGCTATTTTTACGGGAGACACACCACCTTCAACCGGCAACATGAACTAGGTAACTCTGTATAGTTAGGACAAATGAGAAAAAGATCACGTAGTGTTTATGTTGAGGTGAGCAAGTTGAGTTGAACAACACCATCATTAAAAAAAAAAAGAGTGAAAGAAACTCATTGGCCTAGCATCGAGATGTGTGGCAATCACGCATTATGAGTTAGCTATTGAATGGAGTGTATAGTGCTAAAGTGGAAGAGGGTAGATAGATATGGTTGTTATCTTTTGAAGCTGGTATAAATGGATTTCTGGTTAAATGTACAGTGTCATTTTCTTTCCCTTTTGAAAAACAGTTCATGACTATGTTCTATGTTGTGGTGAACTGAAAATGCACTAATTTGGGAGATTTTTGATATTTATTGATGACTTCAAATGTCATGTAATTGGGGAGCTGGTTTCAGAAGTATGGTATCCATAAAGTACACATGTTCTCTCATGCTTAGTTTCTACTAGTTTTTACTGTTTGAAGTTCTCGGAAAATGATTATTGGGCTTCTGATGAAGTTCTGTCAGAACCTAAGAGATAGAATCAGAAGCCTTTCTGGTGAAGTTTTACTTTCGTGAATGCTGGCATGTGACCTTTTGTGACACAATATCCTAGTTTCTCTTGTTCTAACCCCCCACCTTCTCCTCCCCTCACCCTTTTTAAGTGTTTTAAATAAATGGTTCAATTTTAGCTCTTATAGGTATTATCTTTTCTATACTGCCAGCCTTCATGTCTCTTGTGCTGGATGCTGATATTTACTAATTGAACTTCTTTTACATCTTGTTGCTTGACGGCAGACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAAGTGAGTTAATCACCAAAAATTCTTTTGTTATGCTTTAAGCTGATTTGGCTGTTACTTTACAGTTAATTATATATTCATTTCCTCCATAACAAGTTATGAACTGATATTGTGGTTTCAGGCAGTACTTTGTTGACATGGATGATAC</genome_strand>
        <mrna_strand>AGTAAAAAATATCATTTTTTTTTCACTTTCCCCTTTGAAAATTCTGACTAATTTTTGCTTCTTTGATTCCTCTAATTCACATGCTGTACTGTCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA......................................................................................................................GCAGTACTTTGTTGACATGGATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355814" ref_strand="+" ref_description="SGN-E355814 [cLHT-12-F16]">
      <seq>tcacgcttgtttttgttagtactacaatattccagtttcttctctcacaagaaccaaaaatacaaatctctctgttcttgggttgactcaaatttaacatatatatgtatttttttggttttctgattctgttttaagatacccttttgaatttccattgagaaagttggaatcttttttgtatttttgtgtatttggggaagatgagtattgagagtaattaccagatgaaggtggtgaaaggagattatggttatgttcttgaagatgttcctcatttgactgattatatccctgatcttcctactcatgacaatccattgcggtccaatcctgcatattcagttgtgaagcagtactttgttgacatggatgatactgtcccgcaaaaggttgttgttcacaaggacagtccaagaggggtgcatttccgacgtgctggtccacgtcagaaggtgtatttcagttcggatgatgttcgtgcttgtattgtaacttgtggtggtttgtgccctgngctaaacacagtgataagagagattgtacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="67963" stop="71548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68263" g_stop="68570" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69605" g_stop="69651" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="352" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69770" g_stop="69809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="392" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70990" g_stop="71052" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="455" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.702" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71154" g_stop="71248" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="550" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E355814" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68263" e_stop="68570"/>
          <exon e_start="69605" e_stop="69651"/>
          <exon e_start="69770" e_stop="69809"/>
          <exon e_start="70990" e_stop="71052"/>
          <exon e_start="71154" e_stop="71248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCTGTATTGTTCTTGTATTCTCTCTTTTTTCTCTCTCTTAATTTCTGAATGATATTGAGTGTGTTTGTGTTTAGATGTTGTATGTGTGAATCTCTAATTGTTTGATTTTGTCATTTTGTAATGTTGATTGATTCGGTTTGTTTAGTTGTTGCATCTTGTGTTGTTTGTCCTTCATTTGATCCATAACAATGTAGAAAGAAATGTGAAAGAAGCTATTTTTACGGGAGACACACCACCTTCAACCGGCAACATGAACTAGGTAACTCTGTATAGTTAGGACAAATGAGAAAAAGATCACGTAGTGTTTATGTTGAGGTGAGCAAGTTGAGTTGAACAACACCATCATTAAAAAAAAAAAGAGTGAAAGAAACTCATTGGCCTAGCATCGAGATGTGTGGCAATCACGCATTATGAGTTAGCTATTGAATGGAGTGTATAGTGCTAAAGTGGAAGAGGGTAGATAGATATGGTTGTTATCTTTTGAAGCTGGTATAAATGGATTTCTGGTTAAATGTACAGTGTCATTTTCTTTCCCTTTTGAAAAACAGTTCATGACTATGTTCTATGTTGTGGTGAACTGAAAATGCACTAATTTGGGAGATTTTTGATATTTATTGATGACTTCAAATGTCATGTAATTGGGGAGCTGGTTTCAGAAGTATGGTATCCATAAAGTACACATGTTCTCTCATGCTTAGTTTCTACTAGTTTTTACTGTTTGAAGTTCTCGGAAAATGATTATTGGGCTTCTGATGAAGTTCTGTCAGAACCTAAGAGATAGAATCAGAAGCCTTTCTGGTGAAGTTTTACTTTCGTGAATGCTGGCATGTGACCTTTTGTGACACAATATCCTAGTTTCTCTTGTTCTAACCCCCCACCTTCTCCTCCCCTCACCCTTTTTAAGTGTTTTAAATAAATGGTTCAATTTTAGCTCTTATAGGTATTATCTTTTCTATACTGCCAGCCTTCATGTCTCTTGTGCTGGATGCTGATATTTACTAATTGAACTTCTTTTACATCTTGTTGCTTGACGGCAGACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAAGTGAGTTAATCACCAAAAATTCTTTTGTTATGCTTTAAGCTGATTTGGCTGTTACTTTACAGTTAATTATATATTCATTTCCTCCATAACAAGTTATGAACTGATATTGTGGTTTCAGGCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAGGTGAGTCCTGCTTCTTAACTTCTCTGCAAAGAAGAAAATATTACACCCATGTTCATTCCAATGTTCGATGAAATACTAAGACAAATTACATTTGACTGCATAGAGTCTTGAGAAAGCTGTAACATTCTCTATTTCGTTACCTTGGGAGTGCAGGTGATCCAAGAATGTACTAATAGGAATAACTTGAAAGCTAGAGTAGAGGACTATTACACTTCGATCTAGGTTTTGGAAAAATGAAGATCCCGTATTTTGTTGAATTTGACATATCTAGTAGTTCTGCGTAACATATGAACACTTTGTTTTCCACCCTTGCCACAAATTTCATCTCAGGAAACAGAGTCTAAGCATTGAAATGGAATGCTTAAAGGATAAACAAAATCAAGGTATATGTCAAAAAATTGAGAATTTACTCCATTATATAGCTGAAAGGTACAAAAAAGAATATGCTGATATGATTAAGAATAGGTGTCTATTAAATCTGTATTTTATGTGTAAAAGGAGAATTATGGTAAGTAGGGAGCGATACTGGAGTTACCAGAAGAGATAAGAGATCGGTAGTTTCATGTTAGTGATAGATGCTGATCATTTGTAATATGTACCATCTTAGTACCTTTATTATTTAAATCTTAATTTATTAAAATAAGAACATGCTCTGACTCTTCAGAATGTCCGGCCAATCATTCCGCTAACATCTCGAATTCATGCCCCCGTTTGACTGTCGTTCGGGGATGTAGTTGAAGATAGGTTAGTCTTAGTGGGTCGTTGACTCCACCTGTTATCTCCTTCTATGGCATGCTATTGTTGTCTCCATATACCACATGTCATATACTCATCTCTACCTCGCTGGGTCAGCACCCCTGAAAGAAACGGTATTAAACCCAAAACTTCTGGCAGGTGGCCAGTGGCCCAAAGAAACGAAAGAATCTGTTACGTTTTTATATGATCTCTTCTTTTAGATAGACCAACCTAAAAGCAGTACTTTGCTCTCTTTTTCATTTCTGTAGTCTTTTCAGTAGTTTCCAAGATGATATAACTGTGAAGAAGCGTGAAAATACTCTTTCTTAAATTGAGCCCTTCATAATCTTTATATTCTTATGCTAGCTTGTCTTTCCACCTTGGTACCAGGGAAACTTGTATCCCCCCTCCCCCAAATTGATGTAATGTTTAAGTCTCTTTCCAGGTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAGGTATGTACTATGTACTTTCCTCTGGAAAGAGCAATCCTCCTATTTTTCATCAATCAGTAGAAGTATGAACTCACTAAGAAGCGTGCTTCTTTGTTGCTCAGGTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAG</genome_strand>
        <mrna_strand>TCACGCTTGTTTTTGTTAGTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTGTTCTTGGGTTGACTCAAATTTAAC--ATATATATGTATTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTA-TTTTTGTGTATTTGGGGAAGATGAGTATTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATTATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA......................................................................................................................GCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTCACAAGGACAGTCCAAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAG.....................................................................................................GTGTATTTCAGTTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGNGCTAAACACAGTGATAAGAGAGATTGTACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299823" ref_strand="+" ref_description="SGN-E299823 [cLEW-1-M3]">
      <seq>aaaatacaaatctctcttttgtggggttgactcaaatttaacatatatatatgtgtttttttggttttctgattctgttttaagatacccttttgaatttccattgagaaagttggaatcttttttgtattttttgtgtatttggggaagatgggtactgagagtaattaccagatgaaggtggtgaaaggagatcatggttatgttcttgaagatgttcctcatttgactgattatatccctgatcttcctactcatgacaatccattgcggtccaatcctgcatattcagttgtgaagcagtactttgttgacatggatgatactgtcccgcaaaaggttgttgttcacaaggacagtcccagaggggtgcatttccgacgtgctggtccacgtcagaaggtgtatttcaattcggatgatgttcgtgcttgtattgtaacttgtggtggtttgtgccctgggctaaacacagtgatcagagagattgtacatagccttgattatatgtatggggtcagcaaagtctttgggatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="68019" stop="71591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68319" g_stop="68570" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69605" g_stop="69651" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="299" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69770" g_stop="69809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="339" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70990" g_stop="71052" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="402" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71154" g_stop="71291" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="540" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E299823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68319" e_stop="68570"/>
          <exon e_start="69605" e_stop="69651"/>
          <exon e_start="69770" e_stop="69809"/>
          <exon e_start="70990" e_stop="71052"/>
          <exon e_start="71154" e_stop="71291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCTGTATTGTTCTTGTATTCTCTCTTTTTTCTCTCTCTTAATTTCTGAATGATATTGAGTGTGTTTGTGTTTAGATGTTGTATGTGTGAATCTCTAATTGTTTGATTTTGTCATTTTGTAATGTTGATTGATTCGGTTTGTTTAGTTGTTGCATCTTGTGTTGTTTGTCCTTCATTTGATCCATAACAATGTAGAAAGAAATGTGAAAGAAGCTATTTTTACGGGAGACACACCACCTTCAACCGGCAACATGAACTAGGTAACTCTGTATAGTTAGGACAAATGAGAAAAAGATCACGTAGTGTTTATGTTGAGGTGAGCAAGTTGAGTTGAACAACACCATCATTAAAAAAAAAAAGAGTGAAAGAAACTCATTGGCCTAGCATCGAGATGTGTGGCAATCACGCATTATGAGTTAGCTATTGAATGGAGTGTATAGTGCTAAAGTGGAAGAGGGTAGATAGATATGGTTGTTATCTTTTGAAGCTGGTATAAATGGATTTCTGGTTAAATGTACAGTGTCATTTTCTTTCCCTTTTGAAAAACAGTTCATGACTATGTTCTATGTTGTGGTGAACTGAAAATGCACTAATTTGGGAGATTTTTGATATTTATTGATGACTTCAAATGTCATGTAATTGGGGAGCTGGTTTCAGAAGTATGGTATCCATAAAGTACACATGTTCTCTCATGCTTAGTTTCTACTAGTTTTTACTGTTTGAAGTTCTCGGAAAATGATTATTGGGCTTCTGATGAAGTTCTGTCAGAACCTAAGAGATAGAATCAGAAGCCTTTCTGGTGAAGTTTTACTTTCGTGAATGCTGGCATGTGACCTTTTGTGACACAATATCCTAGTTTCTCTTGTTCTAACCCCCCACCTTCTCCTCCCCTCACCCTTTTTAAGTGTTTTAAATAAATGGTTCAATTTTAGCTCTTATAGGTATTATCTTTTCTATACTGCCAGCCTTCATGTCTCTTGTGCTGGATGCTGATATTTACTAATTGAACTTCTTTTACATCTTGTTGCTTGACGGCAGACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAAGTGAGTTAATCACCAAAAATTCTTTTGTTATGCTTTAAGCTGATTTGGCTGTTACTTTACAGTTAATTATATATTCATTTCCTCCATAACAAGTTATGAACTGATATTGTGGTTTCAGGCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAGGTGAGTCCTGCTTCTTAACTTCTCTGCAAAGAAGAAAATATTACACCCATGTTCATTCCAATGTTCGATGAAATACTAAGACAAATTACATTTGACTGCATAGAGTCTTGAGAAAGCTGTAACATTCTCTATTTCGTTACCTTGGGAGTGCAGGTGATCCAAGAATGTACTAATAGGAATAACTTGAAAGCTAGAGTAGAGGACTATTACACTTCGATCTAGGTTTTGGAAAAATGAAGATCCCGTATTTTGTTGAATTTGACATATCTAGTAGTTCTGCGTAACATATGAACACTTTGTTTTCCACCCTTGCCACAAATTTCATCTCAGGAAACAGAGTCTAAGCATTGAAATGGAATGCTTAAAGGATAAACAAAATCAAGGTATATGTCAAAAAATTGAGAATTTACTCCATTATATAGCTGAAAGGTACAAAAAAGAATATGCTGATATGATTAAGAATAGGTGTCTATTAAATCTGTATTTTATGTGTAAAAGGAGAATTATGGTAAGTAGGGAGCGATACTGGAGTTACCAGAAGAGATAAGAGATCGGTAGTTTCATGTTAGTGATAGATGCTGATCATTTGTAATATGTACCATCTTAGTACCTTTATTATTTAAATCTTAATTTATTAAAATAAGAACATGCTCTGACTCTTCAGAATGTCCGGCCAATCATTCCGCTAACATCTCGAATTCATGCCCCCGTTTGACTGTCGTTCGGGGATGTAGTTGAAGATAGGTTAGTCTTAGTGGGTCGTTGACTCCACCTGTTATCTCCTTCTATGGCATGCTATTGTTGTCTCCATATACCACATGTCATATACTCATCTCTACCTCGCTGGGTCAGCACCCCTGAAAGAAACGGTATTAAACCCAAAACTTCTGGCAGGTGGCCAGTGGCCCAAAGAAACGAAAGAATCTGTTACGTTTTTATATGATCTCTTCTTTTAGATAGACCAACCTAAAAGCAGTACTTTGCTCTCTTTTTCATTTCTGTAGTCTTTTCAGTAGTTTCCAAGATGATATAACTGTGAAGAAGCGTGAAAATACTCTTTCTTAAATTGAGCCCTTCATAATCTTTATATTCTTATGCTAGCTTGTCTTTCCACCTTGGTACCAGGGAAACTTGTATCCCCCCTCCCCCAAATTGATGTAATGTTTAAGTCTCTTTCCAGGTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAGGTATGTACTATGTACTTTCCTCTGGAAAGAGCAATCCTCCTATTTTTCATCAATCAGTAGAAGTATGAACTCACTAAGAAGCGTGCTTCTTTGTTGCTCAGGTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGAT</genome_strand>
        <mrna_strand>AAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA......................................................................................................................GCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAG.....................................................................................................GTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617977" ref_strand="+" ref_description="SGN-E617977 [68650]">
      <seq>caaatctctcttttcttgggttgactcaaatttaacatatatatgtatttttttgtttttgtgattctgttttcagatacccttttgaatttccattgagaaagttggaatcttttgttttatatatttggggaagatgggtactgagagtaattaccagatgaaggtggtgaaaggagattatggctatgttcttgaagatgttcctcatttgactgattatatccctgatcttcctacttatgacaatccattgcggtccaatcctgcatttcagtcgtgaagcaagtactttgttgacatggatgatactgtcccccaaaaggttgttgttcacaaggacagtcccagaggggtgcatttccggcgagctggtccaacgtcagaaggtgtatttccagttcggatgatgtccgtgcttgtattgtaacttgtggtggtttgtgccctgggctaaacacagtgatcagagagattgtacatagccttgattatatgtatggaggtcaacaaagtctttggtatcgatggaggctacagggngtttctattccaagaatatcatcaatttgacaccaaagactgttaatgacattcataaacgtggtggtacaaattcttggatcatcacggaggatggcatgataccacaaaggattgttgacagcatacaggaccgtggaattaatcaggtttatataatcggtggtgatggaactcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="68025" stop="73466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68325" g_stop="68570" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69605" g_stop="69651" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="284" r_length="46" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69770" g_stop="69809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="325" r_length="41" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180">
            <donor d_prob="0.995" d_score="0.93"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70990" g_stop="71052" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="389" r_length="64" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.702" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71154" g_stop="71291" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="529" r_length="140" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71292" i_stop="72513" i_length="1222">
            <donor d_prob="0.918" d_score="0.92"/>
            <acceptor a_prob="0.790" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72514" g_stop="72672" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="692" r_length="163" r_score="0.937"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73136" g_stop="73166" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="723" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E617977" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68325" e_stop="68570"/>
          <exon e_start="69605" e_stop="69651"/>
          <exon e_start="69770" e_stop="69809"/>
          <exon e_start="70990" e_stop="71052"/>
          <exon e_start="71154" e_stop="71291"/>
          <exon e_start="72514" e_stop="72672"/>
          <exon e_start="73136" e_stop="73166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCTGTATTGTTCTTGTATTCTCTCTTTTTTCTCTCTCTTAATTTCTGAATGATATTGAGTGTGTTTGTGTTTAGATGTTGTATGTGTGAATCTCTAATTGTTTGATTTTGTCATTTTGTAATGTTGATTGATTCGGTTTGTTTAGTTGTTGCATCTTGTGTTGTTTGTCCTTCATTTGATCCATAACAATGTAGAAAGAAATGTGAAAGAAGCTATTTTTACGGGAGACACACCACCTTCAACCGGCAACATGAACTAGGTAACTCTGTATAGTTAGGACAAATGAGAAAAAGATCACGTAGTGTTTATGTTGAGGTGAGCAAGTTGAGTTGAACAACACCATCATTAAAAAAAAAAAGAGTGAAAGAAACTCATTGGCCTAGCATCGAGATGTGTGGCAATCACGCATTATGAGTTAGCTATTGAATGGAGTGTATAGTGCTAAAGTGGAAGAGGGTAGATAGATATGGTTGTTATCTTTTGAAGCTGGTATAAATGGATTTCTGGTTAAATGTACAGTGTCATTTTCTTTCCCTTTTGAAAAACAGTTCATGACTATGTTCTATGTTGTGGTGAACTGAAAATGCACTAATTTGGGAGATTTTTGATATTTATTGATGACTTCAAATGTCATGTAATTGGGGAGCTGGTTTCAGAAGTATGGTATCCATAAAGTACACATGTTCTCTCATGCTTAGTTTCTACTAGTTTTTACTGTTTGAAGTTCTCGGAAAATGATTATTGGGCTTCTGATGAAGTTCTGTCAGAACCTAAGAGATAGAATCAGAAGCCTTTCTGGTGAAGTTTTACTTTCGTGAATGCTGGCATGTGACCTTTTGTGACACAATATCCTAGTTTCTCTTGTTCTAACCCCCCACCTTCTCCTCCCCTCACCCTTTTTAAGTGTTTTAAATAAATGGTTCAATTTTAGCTCTTATAGGTATTATCTTTTCTATACTGCCAGCCTTCATGTCTCTTGTGCTGGATGCTGATATTTACTAATTGAACTTCTTTTACATCTTGTTGCTTGACGGCAGACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAAGTGAGTTAATCACCAAAAATTCTTTTGTTATGCTTTAAGCTGATTTGGCTGTTACTTTACAGTTAATTATATATTCATTTCCTCCATAACAAGTTATGAACTGATATTGTGGTTTCAGGC-AGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAGGTGAGTCCTGCTTCTTAACTTCTCTGCAAAGAAGAAAATATTACACCCATGTTCATTCCAATGTTCGATGAAATACTAAGACAAATTACATTTGACTGCATAGAGTCTTGAGAAAGCTGTAACATTCTCTATTTCGTTACCTTGGGAGTGCAGGTGATCCAAGAATGTACTAATAGGAATAACTTGAAAGCTAGAGTAGAGGACTATTACACTTCGATCTAGGTTTTGGAAAAATGAAGATCCCGTATTTTGTTGAATTTGACATATCTAGTAGTTCTGCGTAACATATGAACACTTTGTTTTCCACCCTTGCCACAAATTTCATCTCAGGAAACAGAGTCTAAGCATTGAAATGGAATGCTTAAAGGATAAACAAAATCAAGGTATATGTCAAAAAATTGAGAATTTACTCCATTATATAGCTGAAAGGTACAAAAAAGAATATGCTGATATGATTAAGAATAGGTGTCTATTAAATCTGTATTTTATGTGTAAAAGGAGAATTATGGTAAGTAGGGAGCGATACTGGAGTTACCAGAAGAGATAAGAGATCGGTAGTTTCATGTTAGTGATAGATGCTGATCATTTGTAATATGTACCATCTTAGTACCTTTATTATTTAAATCTTAATTTATTAAAATAAGAACATGCTCTGACTCTTCAGAATGTCCGGCCAATCATTCCGCTAACATCTCGAATTCATGCCCCCGTTTGACTGTCGTTCGGGGATGTAGTTGAAGATAGGTTAGTCTTAGTGGGTCGTTGACTCCACCTGTTATCTCCTTCTATGGCATGCTATTGTTGTCTCCATATACCACATGTCATATACTCATCTCTACCTCGCTGGGTCAGCACCCCTGAAAGAAACGGTATTAAACCCAAAACTTCTGGCAGGTGGCCAGTGGCCCAAAGAAACGAAAGAATCTGTTACGTTTTTATATGATCTCTTCTTTTAGATAGACCAACCTAAAAGCAGTACTTTGCTCTCTTTTTCATTTCTGTAGTCTTTTCAGTAGTTTCCAAGATGATATAACTGTGAAGAAGCGTGAAAATACTCTTTCTTAAATTGAGCCCTTCATAATCTTTATATTCTTATGCTAGCTTGTCTTTCCACCTTGGTACCAGGGAAACTTGTATCCCCCCTCCCCCAAATTGATGTAATGTTTAAGTCTCTTTCCAGGTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCC-ACGTCAGAAGGTATGTACTATGTACTTTCCTCTGGAAAGAGCAATCCTCCTATTTTTCATCAATCAGTAGAAGTATGAACTCACTAAGAAGCGTGCTTCTTTGTTGCTCAGGTGTATTT-CAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGG-GGTCAGCAAAGTCTTTGGGATCGATGTAAGTTGTTTGAACTTCAAACTTTTAATGCTTGTTTAGGCATTCTGCCTCATATGGGAAGTGATTGAGACATGCACAGTTAGTTGCAAGGGGGTGCAGTCACTATTTGTTCGTACTTGATTCCATATTGATGAACAATGGATGCTGTGCAGTCATGTGCTTATGTTATTTCATAACTTCTCACAGTTTTAAAAGCTGGCTGCTGAATATTTTTTTTTCTGCAAATGTTTTTGGCATTAGATCAGTTATTAAACTTCAGCAGGTAAAGACTTTGTAGGACTAGATCAAATAGCACCACTTCTCTATGTGAAGACTTGCAACATGCAGAGTCCCCCCAAGGTGATTTGCATCATGTGCTCAAAGAACTTGACCATATCTTTAGTCAATATTAGAGCAATTTGTAAGACTCAAACTATTATCTCAATACTTCATTATTCAGCCTGTGGTACACAGAGCCATTCATGGATTCCCTTACTGAAAAAGAATGAAGTTGAATTATGGTGACTGTATCAAAACATTGAGATATAATGCTTCTGTATTCATGTTGAATCCACTAATCGTAGAATCCAGAGGAATCATAGGCCAGTTCTGGAGTTTGCATTCATTTATGGTTAGACCTTCTATCTATGAAATGATAATCTAGCTCAATCGGTTGCTAGTTCAAAAAATCAGAAGACATTATCTATCCATCTTATTACAACTATGAAAAAAAGAAGGAAGTGCTGCTTTGTGGGAAATGTAATACAACAACGTATATGAGGTAGATAGAAAGATGAACTTTTGAGTGATATAAAGTTGTAATCCTTGTCAAGTTTCTACAGCATCAGTTTGCTTCAATTCTGAATAGAATACTTATAAGGTGGTGGGGGTGAGATGGAGGACTCTGGTGATAATATCGATAAAAAAGATCTTGAATCTTATTGATTCATAGACAATGCTTAAAGAAACTTAACATGGTAATTCAATTTGCTTAGACCTTGGGTCTAACTCAACCTCAAGTTAGCATCTAGCACAAGGACACCAATTTGCTTTGTGTGGTAAGTTTAGATAGTAAAGCAGATTATTTTTGCTGTTTTGTTTTTGAACCATTTTTTGCTATTAAATATTAATGTTCGACAATTGGAGATTGATATGGCTTTTTATTCTGTTTTCACATCTTCCTCTTGGAAAATTTTTATATTGCACTTGATTGGCAGCTGATACTTCAATTCTTTTTCAAAAGGGAGGCTACAGGG-GTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTAC-AATTCTTGGATCATCAC-GAGGAGGCCATGATACCACAAA-GATTGTTGACAGCATACAGGACCGTGGAATTAATCAGGTATCTCTAGTGCGAGATTGTCCATAAACAAGTTTTCTTTGAGATAGTTGTCCATCAATAAATAGGTGTGGAACTGGCAGAATACTTTTCCGTTTTCATCCCTCACCATTCTAACTGTGATTTTCTCAACCTTTTGCAAAAACTGATTATTAATGAAGAAGGGAACTATACTGGTCATGAAAATCTTCTTTGGGGGTAAAGAAAGTTGAGCTTCTGTTAGCATGCTTGTTTGTATTCATGCAAAAGACTTTATCTGGAAAAGAATATAGAGGGAAAAAAGGGGTTTAGGAATAGAATTTTAGCTTTGTCACAAACAACATGATCTTTAGGGATGAAATTGCTGTTTATACCAGAAGTCACTATCCTCCGAGGCAAATCTTCTATCTCACTGCAAAATGTCTTGAGTGTGGTTTTGTCACTCAATAAATTTCCACTGGCTATAACTTGTGTTTTTTACTGTAAGGTTTATATAATTGGTGGTGATGGAACTCAGA</genome_strand>
        <mrna_strand>CAAATCTCTCTTTTCTTGGGTTGACTCAAATTTAAC--ATATATATGTATTTTTTTGTTTTTGTGATTCTGTTTTCAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATC--TTTTG----TTTTATATATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATTATGGCTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATGACAATCCATTGCGGTCCAATCCTGCAT-TTCAGTCGTGAA......................................................................................................................GCAAGTACTTTGTTGACATGGATGATACTGTCCCCCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGGCGAGCTGGTCCAACGTCAGAAG.....................................................................................................GTGTATTTCCAGTTCGGATGATGTCCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGAGGTCAACAAAGTCTTTGGTATCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTACAGGGNGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAAATTCTTGGATCATCACGGAGGATGGCATGATACCACAAAGGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATATAATCGGTGGTGATGGAACTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416222" ref_strand="+" ref_description="SGN-E416222 [STM-22-P15]">
      <seq>cttttcttgggttgactcaaatttaacatatatatgtattttttcgtttttgtaattctgttttcagatacccttttgaatttcccttgagaaagttggaatctttttgtttttgtatatttggggaagatgggtactgagagtaattaccagatgaaggtggtgaaaggagattatggatatgttcttgaagatgttcctcatttgactgattatatccctgatcttcctacttatgacaatccattgcggtccaatcctgcatattcagttgtgaagcagtactttgttgacatggatgatactgtcccccaaaaggttgttgttcacaaggatagtcccagaggggtgcatttccggcgtgctggtccacgtcagaaggtgtatttcagttcggatgatgttcgtgcttgtattgtaacttgtggtggtttgtgccctgngctaaacacagtgatcagagagattgtacatagccttgattatatgtatggggtcagcaaagtctttggtatcgatggaggctacanggggtttctattccaagaatatcatcaatttgacaccaaagactgttaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="68034" stop="72877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68334" g_stop="68570" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69605" g_stop="69651" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="278" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69770" g_stop="69809" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="318" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70990" g_stop="71052" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="381" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.702" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71154" g_stop="71291" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="519" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71292" i_stop="72513" i_length="1222">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72514" g_stop="72577" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="584" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E416222" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68334" e_stop="68570"/>
          <exon e_start="69605" e_stop="69651"/>
          <exon e_start="69770" e_stop="69809"/>
          <exon e_start="70990" e_stop="71052"/>
          <exon e_start="71154" e_stop="71291"/>
          <exon e_start="72514" e_stop="72577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCTGTATTGTTCTTGTATTCTCTCTTTTTTCTCTCTCTTAATTTCTGAATGATATTGAGTGTGTTTGTGTTTAGATGTTGTATGTGTGAATCTCTAATTGTTTGATTTTGTCATTTTGTAATGTTGATTGATTCGGTTTGTTTAGTTGTTGCATCTTGTGTTGTTTGTCCTTCATTTGATCCATAACAATGTAGAAAGAAATGTGAAAGAAGCTATTTTTACGGGAGACACACCACCTTCAACCGGCAACATGAACTAGGTAACTCTGTATAGTTAGGACAAATGAGAAAAAGATCACGTAGTGTTTATGTTGAGGTGAGCAAGTTGAGTTGAACAACACCATCATTAAAAAAAAAAAGAGTGAAAGAAACTCATTGGCCTAGCATCGAGATGTGTGGCAATCACGCATTATGAGTTAGCTATTGAATGGAGTGTATAGTGCTAAAGTGGAAGAGGGTAGATAGATATGGTTGTTATCTTTTGAAGCTGGTATAAATGGATTTCTGGTTAAATGTACAGTGTCATTTTCTTTCCCTTTTGAAAAACAGTTCATGACTATGTTCTATGTTGTGGTGAACTGAAAATGCACTAATTTGGGAGATTTTTGATATTTATTGATGACTTCAAATGTCATGTAATTGGGGAGCTGGTTTCAGAAGTATGGTATCCATAAAGTACACATGTTCTCTCATGCTTAGTTTCTACTAGTTTTTACTGTTTGAAGTTCTCGGAAAATGATTATTGGGCTTCTGATGAAGTTCTGTCAGAACCTAAGAGATAGAATCAGAAGCCTTTCTGGTGAAGTTTTACTTTCGTGAATGCTGGCATGTGACCTTTTGTGACACAATATCCTAGTTTCTCTTGTTCTAACCCCCCACCTTCTCCTCCCCTCACCCTTTTTAAGTGTTTTAAATAAATGGTTCAATTTTAGCTCTTATAGGTATTATCTTTTCTATACTGCCAGCCTTCATGTCTCTTGTGCTGGATGCTGATATTTACTAATTGAACTTCTTTTACATCTTGTTGCTTGACGGCAGACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAAGTGAGTTAATCACCAAAAATTCTTTTGTTATGCTTTAAGCTGATTTGGCTGTTACTTTACAGTTAATTATATATTCATTTCCTCCATAACAAGTTATGAACTGATATTGTGGTTTCAGGCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAGGTGAGTCCTGCTTCTTAACTTCTCTGCAAAGAAGAAAATATTACACCCATGTTCATTCCAATGTTCGATGAAATACTAAGACAAATTACATTTGACTGCATAGAGTCTTGAGAAAGCTGTAACATTCTCTATTTCGTTACCTTGGGAGTGCAGGTGATCCAAGAATGTACTAATAGGAATAACTTGAAAGCTAGAGTAGAGGACTATTACACTTCGATCTAGGTTTTGGAAAAATGAAGATCCCGTATTTTGTTGAATTTGACATATCTAGTAGTTCTGCGTAACATATGAACACTTTGTTTTCCACCCTTGCCACAAATTTCATCTCAGGAAACAGAGTCTAAGCATTGAAATGGAATGCTTAAAGGATAAACAAAATCAAGGTATATGTCAAAAAATTGAGAATTTACTCCATTATATAGCTGAAAGGTACAAAAAAGAATATGCTGATATGATTAAGAATAGGTGTCTATTAAATCTGTATTTTATGTGTAAAAGGAGAATTATGGTAAGTAGGGAGCGATACTGGAGTTACCAGAAGAGATAAGAGATCGGTAGTTTCATGTTAGTGATAGATGCTGATCATTTGTAATATGTACCATCTTAGTACCTTTATTATTTAAATCTTAATTTATTAAAATAAGAACATGCTCTGACTCTTCAGAATGTCCGGCCAATCATTCCGCTAACATCTCGAATTCATGCCCCCGTTTGACTGTCGTTCGGGGATGTAGTTGAAGATAGGTTAGTCTTAGTGGGTCGTTGACTCCACCTGTTATCTCCTTCTATGGCATGCTATTGTTGTCTCCATATACCACATGTCATATACTCATCTCTACCTCGCTGGGTCAGCACCCCTGAAAGAAACGGTATTAAACCCAAAACTTCTGGCAGGTGGCCAGTGGCCCAAAGAAACGAAAGAATCTGTTACGTTTTTATATGATCTCTTCTTTTAGATAGACCAACCTAAAAGCAGTACTTTGCTCTCTTTTTCATTTCTGTAGTCTTTTCAGTAGTTTCCAAGATGATATAACTGTGAAGAAGCGTGAAAATACTCTTTCTTAAATTGAGCCCTTCATAATCTTTATATTCTTATGCTAGCTTGTCTTTCCACCTTGGTACCAGGGAAACTTGTATCCCCCCTCCCCCAAATTGATGTAATGTTTAAGTCTCTTTCCAGGTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAGGTATGTACTATGTACTTTCCTCTGGAAAGAGCAATCCTCCTATTTTTCATCAATCAGTAGAAGTATGAACTCACTAAGAAGCGTGCTTCTTTGTTGCTCAGGTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGATGTAAGTTGTTTGAACTTCAAACTTTTAATGCTTGTTTAGGCATTCTGCCTCATATGGGAAGTGATTGAGACATGCACAGTTAGTTGCAAGGGGGTGCAGTCACTATTTGTTCGTACTTGATTCCATATTGATGAACAATGGATGCTGTGCAGTCATGTGCTTATGTTATTTCATAACTTCTCACAGTTTTAAAAGCTGGCTGCTGAATATTTTTTTTTCTGCAAATGTTTTTGGCATTAGATCAGTTATTAAACTTCAGCAGGTAAAGACTTTGTAGGACTAGATCAAATAGCACCACTTCTCTATGTGAAGACTTGCAACATGCAGAGTCCCCCCAAGGTGATTTGCATCATGTGCTCAAAGAACTTGACCATATCTTTAGTCAATATTAGAGCAATTTGTAAGACTCAAACTATTATCTCAATACTTCATTATTCAGCCTGTGGTACACAGAGCCATTCATGGATTCCCTTACTGAAAAAGAATGAAGTTGAATTATGGTGACTGTATCAAAACATTGAGATATAATGCTTCTGTATTCATGTTGAATCCACTAATCGTAGAATCCAGAGGAATCATAGGCCAGTTCTGGAGTTTGCATTCATTTATGGTTAGACCTTCTATCTATGAAATGATAATCTAGCTCAATCGGTTGCTAGTTCAAAAAATCAGAAGACATTATCTATCCATCTTATTACAACTATGAAAAAAAGAAGGAAGTGCTGCTTTGTGGGAAATGTAATACAACAACGTATATGAGGTAGATAGAAAGATGAACTTTTGAGTGATATAAAGTTGTAATCCTTGTCAAGTTTCTACAGCATCAGTTTGCTTCAATTCTGAATAGAATACTTATAAGGTGGTGGGGGTGAGATGGAGGACTCTGGTGATAATATCGATAAAAAAGATCTTGAATCTTATTGATTCATAGACAATGCTTAAAGAAACTTAACATGGTAATTCAATTTGCTTAGACCTTGGGTCTAACTCAACCTCAAGTTAGCATCTAGCACAAGGACACCAATTTGCTTTGTGTGGTAAGTTTAGATAGTAAAGCAGATTATTTTTGCTGTTTTGTTTTTGAACCATTTTTTGCTATTAAATATTAATGTTCGACAATTGGAGATTGATATGGCTTTTTATTCTGTTTTCACATCTTCCTCTTGGAAAATTTTTATATTGCACTTGATTGGCAGCTGATACTTCAATTCTTTTTCAAAAGGGAGGCTACA-GGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACA</genome_strand>
        <mrna_strand>CTTTTCTTGGGTTGACTCAAATTTAAC--ATATATATGTATTTTTTCGTTTTTGTAATTCTGTTTTCAGATACCCTTTTGAATTTCCCTTGAGAAAGTTGGAATC-TTTTTG---TTTTTGTATATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATTATGGATATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA......................................................................................................................GCAGTACTTTGTTGACATGGATGATACTGTCCCCCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTCACAAGGATAGTCCCAGAGGGGTGCATTTCCGGCGTGCTGGTCCACGTCAGAAG.....................................................................................................GTGTATTTCAGTTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGNGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGTATCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTACANGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438455" ref_strand="+" ref_description="SGN-E438455 [cSTA-8-G3]">
      <seq>cttttcttgggttgactcaaatttaacatatatatgtattttttcgtttttgtaattctgttttcagatacccttttgaatttcccttgagaaagttggaatctttttgtttttgtatatttggggaagatgggtactgagagtaattaccagatgaaggtggtgaaaggagattatggatatgttcttgaagatgttcctcatttgactgattatatccctgatcttcctacttatgacaatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="68034" stop="68870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68334" g_stop="68570" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E438455" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68334" e_stop="68570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT</genome_strand>
        <mrna_strand>CTTTTCTTGGGTTGACTCAAATTTAAC--ATATATATGTATTTTTTCGTTTTTGTAATTCTGTTTTCAGATACCCTTTTGAATTTCCCTTGAGAAAGTTGGAATC-TTTTTG---TTTTTGTATATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATTATGGATATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540613" ref_strand="+" ref_description="SGN-E540613 [TUS-60-P16]">
      <seq>tttgggatcgatggaggctacaggggtttctattccaagaatatcatcaatttgacaccaaagactgttaatgacattcataaacgtggtggtacaattcttggatcatcacgaggaggccatgataccacaaagattgttgacagcatacaggaccgtggaattaatcaggtttatataattggtggtgatggaactcagaaaggagcagctgtaatatacgaggaaatcaggcggcgtgatctcaaagtaattgttgctggaatcccaaagacaattgataatgatatccctgttatcgacaagtcatttggttttgatactgctgtagaggaggctcaacgtgccataaatgcagctcatgttgaagctgaaagtgctgaaaatggtattggtgtggtgaagctaatgggacgctatagtggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcggggtacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="72212" stop="75184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72514" g_stop="72672" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="171" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73136" g_stop="73189" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="225" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73782" g_stop="73850" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="294" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74107" g_stop="74236" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="424" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="693" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E540613" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72514" e_stop="72672"/>
          <exon e_start="73136" e_stop="73189"/>
          <exon e_start="73782" e_stop="73850"/>
          <exon e_start="74107" e_stop="74236"/>
          <exon e_start="74603" e_stop="74871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAGGTATCTCTAGTGCGAGATTGTCCATAAACAAGTTTTCTTTGAGATAGTTGTCCATCAATAAATAGGTGTGGAACTGGCAGAATACTTTTCCGTTTTCATCCCTCACCATTCTAACTGTGATTTTCTCAACCTTTTGCAAAAACTGATTATTAATGAAGAAGGGAACTATACTGGTCATGAAAATCTTCTTTGGGGGTAAAGAAAGTTGAGCTTCTGTTAGCATGCTTGTTTGTATTCATGCAAAAGACTTTATCTGGAAAAGAATATAGAGGGAAAAAAGGGGTTTAGGAATAGAATTTTAGCTTTGTCACAAACAACATGATCTTTAGGGATGAAATTGCTGTTTATACCAGAAGTCACTATCCTCCGAGGCAAATCTTCTATCTCACTGCAAAATGTCTTGAGTGTGGTTTTGTCACTCAATAAATTTCCACTGGCTATAACTTGTGTTTTTTACTGTAAGGTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAGGTATGTTATTTCCTTGAACTCCCAGCTTCAAGATCTTAAAGATGCTAGCTCAAATAGTTTCATTTTGAAGGCAGCAAGGTGCTCATGGATTGTATTGTCTTGCTGAGCTTTTTAGCACTCTGCTCAGAGTTTTGAAAACCAATTCTTTTGTTAGGTCATTGAGGTGATATAATCACTTAACAGTCTCTTGAACTATGCTGTCTGTGATAGTCTGTATTACATATTTACATCATTAATCCTCCTTTAGCATACATCAGTTGAGCTCGTGAATAGTATATATACCTATTTATTGTACTAAATTTGTCCGACTTTGATGTCTTCTGCATATCGACCTAATAGTTTCCAGGGGTCTACTATTCTCTTGAAATTTTCATGTGGTTTTAGTATGATTTTTAAATATCAGGTTGCAAGGTGCTTTTTGATCATTTTTTGCCAGTAATACGAAGCAGCCATTTTTATATGCTTTACCTTTTGCATCTGATTTATGACTGATGATATAGTCCTTGTTTTGGGTATTCTCAATACTTTGGTTGGTGAAAGAGTAGTTATCCTCTGGCAAGTTTATAAGAACAATCCTACTGCCATTTTGCAGGAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCTGTAAGTCTCTTCTTTTTAGTACCACTTGATTTTTTCTTTGGTGTTTCCATTCTATAAACGGTTTAAATAATCTCAGGAAATACAGTTTGATGTTTCTTGCAAATGAGAAACATAAATGTATTCCTCATCACAAAACTTGTTATGATGTCTTCAAAAGCCTCAGCTTGGGACTACCATCTCTTATTTGATCAAGCCAAATTGAGCTCTTCATTTATGGCTGCTGTTCTGTGAAAATTAATTTTTTTTCTGTTTTCAGGTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTGGTATTGTGCACCTTGACCTTGATATCTTATCAACCCATAGTCAATAGGCTAGTTATAACAAGTTTTTTCCAAGTTCCCATGAGTCATGGAGAGCATTTTGTCCATCTCTGCTGCATAACATATCTTGCAGAGTGTCGGTTAATCTTGCTCTTAAAAAATTATTGCTTCTTAGTAGATTCAAACTAGATAATGGTAATAAATAATAAGGTTTGCTTATCCAAGCTCTAGGTCAATCATTTTGATGTGGAGAATAGCTTATAATATTTGCAGTGATCTCAGTAGCAATGCCTTGTAAAGTTATTTTTCCAATGCTTATCTTATTTAAATTTTCCTGGCTTAGTTTAAAATTCTGAAATATTTTTGCAGGATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG</genome_strand>
        <mrna_strand>GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT................................................................................................................................................................................................................................................................GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG..............................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGGTACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289582" ref_strand="+" ref_description="SGN-E289582 [cLET-4-C17]">
      <seq>ttgggatcgatggaggctacaggggtttctattccaagaatatcatcaatttgacaccaaagactgttaatgacattcataaacgtggtggtacaattcttggatcatcacgaggaggccatgataccacaaagattgttgacagcatacaggaccgtggaattaatcaggtttatataattggtggtgatggaactcagaaaggagcagctgtaatatacgaggaaatcaggcggcgtgatctcaaagtaattgttgctggaatcccaaagacaattgataatgatatccctgttatcgacaagtcatttggttttgatactgctgtagaggaggctcaacgtgccataaatgcagctcatgttgaagctgaaagtgctgaaaatggtattggtgtggtgaagctaatgggacgctatagtggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="72212" stop="74954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72514" g_stop="72672" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="170" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73136" g_stop="73189" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="224" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73782" g_stop="73850" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="293" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74107" g_stop="74236" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="423" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74603" g_stop="74654" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="475" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E289582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72514" e_stop="72672"/>
          <exon e_start="73136" e_stop="73189"/>
          <exon e_start="73782" e_stop="73850"/>
          <exon e_start="74107" e_stop="74236"/>
          <exon e_start="74603" e_stop="74654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAGGTATCTCTAGTGCGAGATTGTCCATAAACAAGTTTTCTTTGAGATAGTTGTCCATCAATAAATAGGTGTGGAACTGGCAGAATACTTTTCCGTTTTCATCCCTCACCATTCTAACTGTGATTTTCTCAACCTTTTGCAAAAACTGATTATTAATGAAGAAGGGAACTATACTGGTCATGAAAATCTTCTTTGGGGGTAAAGAAAGTTGAGCTTCTGTTAGCATGCTTGTTTGTATTCATGCAAAAGACTTTATCTGGAAAAGAATATAGAGGGAAAAAAGGGGTTTAGGAATAGAATTTTAGCTTTGTCACAAACAACATGATCTTTAGGGATGAAATTGCTGTTTATACCAGAAGTCACTATCCTCCGAGGCAAATCTTCTATCTCACTGCAAAATGTCTTGAGTGTGGTTTTGTCACTCAATAAATTTCCACTGGCTATAACTTGTGTTTTTTACTGTAAGGTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAGGTATGTTATTTCCTTGAACTCCCAGCTTCAAGATCTTAAAGATGCTAGCTCAAATAGTTTCATTTTGAAGGCAGCAAGGTGCTCATGGATTGTATTGTCTTGCTGAGCTTTTTAGCACTCTGCTCAGAGTTTTGAAAACCAATTCTTTTGTTAGGTCATTGAGGTGATATAATCACTTAACAGTCTCTTGAACTATGCTGTCTGTGATAGTCTGTATTACATATTTACATCATTAATCCTCCTTTAGCATACATCAGTTGAGCTCGTGAATAGTATATATACCTATTTATTGTACTAAATTTGTCCGACTTTGATGTCTTCTGCATATCGACCTAATAGTTTCCAGGGGTCTACTATTCTCTTGAAATTTTCATGTGGTTTTAGTATGATTTTTAAATATCAGGTTGCAAGGTGCTTTTTGATCATTTTTTGCCAGTAATACGAAGCAGCCATTTTTATATGCTTTACCTTTTGCATCTGATTTATGACTGATGATATAGTCCTTGTTTTGGGTATTCTCAATACTTTGGTTGGTGAAAGAGTAGTTATCCTCTGGCAAGTTTATAAGAACAATCCTACTGCCATTTTGCAGGAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCTGTAAGTCTCTTCTTTTTAGTACCACTTGATTTTTTCTTTGGTGTTTCCATTCTATAAACGGTTTAAATAATCTCAGGAAATACAGTTTGATGTTTCTTGCAAATGAGAAACATAAATGTATTCCTCATCACAAAACTTGTTATGATGTCTTCAAAAGCCTCAGCTTGGGACTACCATCTCTTATTTGATCAAGCCAAATTGAGCTCTTCATTTATGGCTGCTGTTCTGTGAAAATTAATTTTTTTTCTGTTTTCAGGTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTGGTATTGTGCACCTTGACCTTGATATCTTATCAACCCATAGTCAATAGGCTAGTTATAACAAGTTTTTTCCAAGTTCCCATGAGTCATGGAGAGCATTTTGTCCATCTCTGCTGCATAACATATCTTGCAGAGTGTCGGTTAATCTTGCTCTTAAAAAATTATTGCTTCTTAGTAGATTCAAACTAGATAATGGTAATAAATAATAAGGTTTGCTTATCCAAGCTCTAGGTCAATCATTTTGATGTGGAGAATAGCTTATAATATTTGCAGTGATCTCAGTAGCAATGCCTTGTAAAGTTATTTTTCCAATGCTTATCTTATTTAAATTTTCCTGGCTTAGTTTAAAATTCTGAAATATTTTTGCAGGATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCT</genome_strand>
        <mrna_strand>GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT................................................................................................................................................................................................................................................................GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG..............................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252409" ref_strand="+" ref_description="SGN-E252409 [cLEG-12-J15]">
      <seq>gaactcagaaaggagcagctgtaatatacgaggaaatcaggcggcgtgatctcaaagtaattgttgctggaatcccaaagacaattgataatgatatccctgttatcgacaagtcatttggttttgatactgctgtagaggaggctcaacgtgccataaatgcagctcatgttgaagctgaaagtgctgaaaatggtattggtgtggtgaagctaatgggacgctatagtggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="72858" stop="76042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73158" g_stop="73189" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73782" g_stop="73850" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="101" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74107" g_stop="74236" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="231" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="500" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="549" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75683" g_stop="75742" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="609" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E252409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73158" e_stop="73189"/>
          <exon e_start="73782" e_stop="73850"/>
          <exon e_start="74107" e_stop="74236"/>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCAGAAAGGAGCAGCTGTAATATACGAGGTATGTTATTTCCTTGAACTCCCAGCTTCAAGATCTTAAAGATGCTAGCTCAAATAGTTTCATTTTGAAGGCAGCAAGGTGCTCATGGATTGTATTGTCTTGCTGAGCTTTTTAGCACTCTGCTCAGAGTTTTGAAAACCAATTCTTTTGTTAGGTCATTGAGGTGATATAATCACTTAACAGTCTCTTGAACTATGCTGTCTGTGATAGTCTGTATTACATATTTACATCATTAATCCTCCTTTAGCATACATCAGTTGAGCTCGTGAATAGTATATATACCTATTTATTGTACTAAATTTGTCCGACTTTGATGTCTTCTGCATATCGACCTAATAGTTTCCAGGGGTCTACTATTCTCTTGAAATTTTCATGTGGTTTTAGTATGATTTTTAAATATCAGGTTGCAAGGTGCTTTTTGATCATTTTTTGCCAGTAATACGAAGCAGCCATTTTTATATGCTTTACCTTTTGCATCTGATTTATGACTGATGATATAGTCCTTGTTTTGGGTATTCTCAATACTTTGGTTGGTGAAAGAGTAGTTATCCTCTGGCAAGTTTATAAGAACAATCCTACTGCCATTTTGCAGGAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCTGTAAGTCTCTTCTTTTTAGTACCACTTGATTTTTTCTTTGGTGTTTCCATTCTATAAACGGTTTAAATAATCTCAGGAAATACAGTTTGATGTTTCTTGCAAATGAGAAACATAAATGTATTCCTCATCACAAAACTTGTTATGATGTCTTCAAAAGCCTCAGCTTGGGACTACCATCTCTTATTTGATCAAGCCAAATTGAGCTCTTCATTTATGGCTGCTGTTCTGTGAAAATTAATTTTTTTTCTGTTTTCAGGTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTGGTATTGTGCACCTTGACCTTGATATCTTATCAACCCATAGTCAATAGGCTAGTTATAACAAGTTTTTTCCAAGTTCCCATGAGTCATGGAGAGCATTTTGTCCATCTCTGCTGCATAACATATCTTGCAGAGTGTCGGTTAATCTTGCTCTTAAAAAATTATTGCTTCTTAGTAGATTCAAACTAGATAATGGTAATAAATAATAAGGTTTGCTTATCCAAGCTCTAGGTCAATCATTTTGATGTGGAGAATAGCTTATAATATTTGCAGTGATCTCAGTAGCAATGCCTTGTAAAGTTATTTTTCCAATGCTTATCTTATTTAAATTTTCCTGGCTTAGTTTAAAATTCTGAAATATTTTTGCAGGATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTC</genome_strand>
        <mrna_strand>GAACTCAGAAAGGAGCAGCTGTAATATACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT................................................................................................................................................................................................................................................................GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG..............................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718288" ref_strand="+" ref_description="SGN-E718288 [FC04BA01]">
      <seq>gctaatgggacgctatagtggattcatcgcaacgcatgcaactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcaaaagagaatgcacatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatataggtaagaaatttcaacctcttaattggtggattcgttgcaacatgtatcaagctgctcgctttttttttcaaatccaacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatgtaagtcgttatgcattgactggtcttttcagtggaaatgatcttgaaaatttccatgcatgtacctctcaatgtcaaggttttgggcatcctttatgagtacttctttccgttattaagtaaatagcttaagatgacaaaaatagtaatactgtagttgagatccacaggccattcatgcttgagacaggcgaaagtaattattatcatatgatatttgttactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="73917" stop="76364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74217" g_stop="74236" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="289" r_length="269" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75561" g_stop="76064" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="791" r_length="502" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E718288" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74217" e_stop="74236"/>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="76064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGACGCTATAGTGGTATTGTGCACCTTGACCTTGATATCTTATCAACCCATAGTCAATAGGCTAGTTATAACAAGTTTTTTCCAAGTTCCCATGAGTCATGGAGAGCATTTTGTCCATCTCTGCTGCATAACATATCTTGCAGAGTGTCGGTTAATCTTGCTCTTAAAAAATTATTGCTTCTTAGTAGATTCAAACTAGATAATGGTAATAAATAATAAGGTTTGCTTATCCAAGCTCTAGGTCAATCATTTTGATGTGGAGAATAGCTTATAATATTTGCAGTGATCTCAGTAGCAATGCCTTGTAAAGTTATTTTTCCAATGCTTATCTTATTTAAATTTTCCTGGCTTAGTTTAAAATTCTGAAATATTTTTGCAGGATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAA</genome_strand>
        <mrna_strand>GCTAATGGGACGCTATAGTG..............................................................................................................................................................................................................................................................................................................................................................................GATTCATCGCAACGCATGCAACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAAAAGAGAATGCACATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGC--TTTTTTTTTCAAATCCAACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATGCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAAAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262446" ref_strand="+" ref_description="SGN-E262446 [cLEG-56-H15]">
      <seq>tggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaattattggacggggataacaatgtacatgagaactcaggtcactgatacagtaataaaaaacttggcgcgacacactgaagtaactttgttgtaatcatttgcctgtgcagtggttctcttggtgtctttgaagctttgctgcttaccattgtattgtgccttataaacagtcttaggaacttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74302" stop="77378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="320" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="475" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="77078" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="798" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E262446" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAAT</genome_strand>
        <mrna_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGGTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTAT-AAACAGTCTTAGGAACTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263698" ref_strand="+" ref_description="SGN-E263698 [cLEG-60-G8]">
      <seq>tggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaattattggacggggataacaatgtacatgagaactcaggtcactgatacagtaataaaaaacttggcgcgacacactgaagtaactttgttgtaatcatttgcctgtgcagtggttctcttggtgtcttttgagctttgctgcttaccattgtattgtgccttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74302" stop="77358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="320" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="475" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="77058" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="779" r_length="304" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E263698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAA</genome_strand>
        <mrna_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGGTGTCTTTTGAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262890" ref_strand="+" ref_description="SGN-E262890 [cLEG-59-D17]">
      <seq>tggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaattattggacggggataacaatgtacatgagaactcaggtcactgatacagtaataaaaaacttggcngcgacacactgaagtaactttgttgtaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74302" stop="77291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="320" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="475" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="76991" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="713" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E262890" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="76991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGC-GCGACACACTGAAGTAACTTTGTTGTAATCATT</genome_strand>
        <mrna_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCNGCGACACACTGAAGTAACTTTGTTGTAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255601" ref_strand="+" ref_description="SGN-E255601 [cLEG-36-K6]">
      <seq>tggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtctaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaattattggacggggataacaatgtacatgagaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74302" stop="77227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="320" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="475" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="76927" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="648" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E255601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="76927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTC</genome_strand>
        <mrna_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251580" ref_strand="+" ref_description="SGN-E251580 [cLEG-9-J17]">
      <seq>tggattcatcgcaatgtatgccactttggcgagcagagatgttgatctctgtgtaattccagagtctccattttatcttgaaggagatggcggactcttcgaatacattgaaaaacggctcaaagaaaatgggcacatggttattgtgatagctgaaggagcagggcaagaacttcttgcagaagagaatgcgcatgccaaaaacgagcaagatgcttcgggtaacaagcttcttcaggatgttggtttgtggatttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74302" stop="77157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74603" g_stop="74871" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="320" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="475" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="76857" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="578" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E251580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74603" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="76857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTG</genome_strand>
        <mrna_strand>GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTGTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427730" ref_strand="-" ref_description="SGN-E427730 [STM-49-C7]">
      <seq>caaaaacgaacaagatgcttcggggaacaagcttctccaggatgttggtttgtggatttcccaaaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaagtatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggctacacaggtttcacctcaggacttgtcaatggtcgccagacttatataccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgttttcttttgtcaaccaatcagccaagctttttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaactgttggatggggataacaatgtacatgagaactcaggtcactgatacagtaattacgaacttggcgtgacacactgaagtaactctgttgtaatcatttgcctgtgcagtggttctcttgtgttgtagaaaaaaaaaaaaaccatttgtttttggtaaactcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74499" stop="77324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74799" g_stop="74871" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="0.94"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="122" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="277" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="77012" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="535" r_length="258" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77013" i_stop="77108" i_length="96">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.786" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77109" g_stop="77114" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="541" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="557"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E427730" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427730" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74799" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77012"/>
          <exon e_start="77109" e_stop="77114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTG</genome_strand>
        <mrna_strand>CAAAAACGAACAAGATGCTTCGGGGAACAAGCTTCTCCAGGATGTTGGTTTGTGGATTTCCCAAAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAGTATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGCTACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATACCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTTTTCTTTTGTCAACCAATCAGCCAAGCTTTTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAACTGTTGGATGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATTACGAACTTGGCGTGACACACTGAAGTAACTCTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTT................................................................................................GTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477573" ref_strand="+" ref_description="SGN-E477573 [cSTD-1-E23]">
      <seq>caaaaacgaaaagacgctttcggggaacaagcttcttcaggaagttggtttgtggacttccccaaaaaacagggatcattttgctaaaaaaacctaagacgccccattactcttaagtatattagatccgacttacatgattcgtgctgttccaagtaatggcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggctacacaggtttcacctcaggacttgtcaatggtcgccagacttatataccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaactgttggatggggataacaatgtacatgagaactcaggtcactgatacagtaattacgaacttggcgtgacacactgaagtaactctgttgtaatcatttgcctgtgcagtggttctcttgttgtctttgnnaaaaaaaaaaaaaaanaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74510" stop="77322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74799" g_stop="74871" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="0.88"/>
            <acceptor a_prob="0.930" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="125" r_length="52" r_score="0.837"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="0.83"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="281" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="77024" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="551" r_length="270" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="572"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E477573" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74799" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACGAGCAAGATGCTT-CGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAAC-TAAGATGC-CCATTACTCTTAAATATA-TAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAAT-GCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAA</genome_strand>
        <mrna_strand>CAAAAACGA-AAAGACGCTTTCGGGGAACAAGCTTCTTCAGGAAGTTGGTTTGTGGACTTCCCCAAAAAACAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACCTAAGACGCCCCATTACTCTTAAGTATATTAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGCTACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATACCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAACTGTTGGATGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATTACGAACTTGGCGTGACACACTGAAGTAACTCTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427729" ref_strand="+" ref_description="SGN-E427729 [STM-49-C7]">
      <seq>aaacgaacaagatgcttcggggaacaagcttctccaggatgttggtttgtggatttcccaaaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaagtatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggctacacaggtttcacctcaggacttgtcaatggtcgccagacttatataccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaactgttggatggggataacaatgtacatgagaactcaggtcactgatacagtaattacgaacttggcgtgacacactgaagtaactctgttgtaatcatttgcctgtgcagtggttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74502" stop="77311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74802" g_stop="74871" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="0.94"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="119" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="274" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="77011" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="531" r_length="257" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E427729" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74802" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCT</genome_strand>
        <mrna_strand>AAACGAACAAGATGCTTCGGGGAACAAGCTTCTCCAGGATGTTGGTTTGTGGATTTCCCAAAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAGTATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGCTACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATACCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAACTGTTGGATGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATTACGAACTTGGCGTGACACACTGAAGTAACTCTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540610" ref_strand="+" ref_description="SGN-E540610 [TUS-60-P16](-)">
      <seq>ttcccagaaaatcagggatcattttgctaaaaaaactaagatgcccattactcttaaatatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttcttttgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaagggggggcagccgcaaactcaattattggacggggataacaatgtacatgagaactcaggtcactgatacagtaataaaaaacttggcgcgacccactgaagtaactttgttgtaatcatttgcctgtgcaggggttctcttgttgtctttgaagctttgctgcttaccattgtattgtgccttataaaacagttttaggaacttaattgttgaaggttttgggatcttctgcatcagatgttggcagtagaaacagatatatttctgcctaattcatctaaactcctaatttctggaagtgaaattagacagctttttataaaatattttgtaataaatttaaacagtgagaacatttgctatgcatataaatgatgaactgtgttgctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="74556" stop="77563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74856" g_stop="74871" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689">
            <donor d_prob="0.758" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75561" g_stop="75609" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="65" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="220" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76755" g_stop="77262" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="728" r_length="508" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="772"/>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E540610" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74856" e_stop="74871"/>
          <exon e_start="75561" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAGAAAATCAGGGTAATGGTTGTAACTCATGAAGTTCTCCTTCAAAAATATTGTTAAAACTCAGAAATATCTCTCTGTTCGTCTGTCTGGAAGTGTGTTAGTTTCCACTTCGCCGTTCAGATCAGTGTCAAATTAAATCCAATTAATGAAGGAGTATGACATCAGCTTCTACACTATTTCTAGAAAGAAGGGTAGTATCCACTTAAAAAGGATTTAAACAAGATGAAAGAAATTATACCTCGTTATTACTCTTACCAAATAATAACCGGAACATCACTAATTGGCATAGCCTCTAATGAAGACATTGTTATGGTAAGAAAATAGCTAACGCATTATAGTGCTATGTTTATATATTTAAATGTATTGCTGCTATCTACTTATCTATCAAAAACTGACTTATGTGTTGGCGTAAATGATATTAAGTGGCTGTAACTACAAATATTTGTTGAACTTTCTGCTTTATGGTATTACAAAGAGGCAAATTTTTCTAACTTCATGGTGCAAAGCACCCTTGATGAGCAATTTGCTGAAGTCTTACATTTCCCAATGTCAGTATTAAGACATTACACCTCTGGCTAAAACTGTCAACATGGTGTGTAGTTATTCTTAAAGAGTCCACGGAAATGTCATGGTTGAGTTGAGTTAGAGAGGAACTATTTCGTCTTCTATTCTGTTATACTCACCACTTTGTTTTCTTGTAGGATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTATAAAATATTTTGTAATAAATTTAAACAGTGAGAACATTTGCTATGCATATAAATGATGAACTGTGTTGCTGG</genome_strand>
        <mrna_strand>TTCCCAGAAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTTGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGGGGGGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACCCACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGGGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTTTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTATAAAATATTTTGTAATAAATTTAAACAGTGAGAACATTTGCTATGCATATAAATGATGAACTGTGTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592721" ref_strand="+" ref_description="SGN-E592721 [35935]">
      <seq>ctcttaatgtatatagatccgacttacatgatcccgtgctgttccaagtaatgcctctgataatgtatattgcactcattcttgtcctcaaagttgtgttcatggagcaatggcaggctacacaggtttcacctcatgacttgtcaatggtcgccaaacttatataccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcagcgtcttctttcgtcaaccaatcatccaagcttcttgcgcgtgaaagacattgacagagattaaacaaggaggagcacccgcaaactcaacgtgttggactggggataacaatgtacatgagaactcacgtcactgcatacagtaattacgaacttggcgtgacacactgaagtaactctgttgtaatcatttgcctgtgcagtggttctcttgttgtctttgaagcttttgctgcttaccattgtgccttataaaaacagtcctaggaacttatttgtgaaggtctgggatcttcttcatcagatgttggcagtacgtaacagatatatttctgcctaattcatctagagtcctaagttcttgaagtgaaattagacatcttttataactatctgtataataactttaataatcaaaaaggtgactgtcacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="75366" stop="77493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75595" g_stop="75609" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="175" r_length="159" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76755" g_stop="77189" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="612" r_length="437" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E592721" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75595" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76755" e_stop="77189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAA-ATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGAT-TCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTC-TTCTTG--CTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCA-CGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGA-AGAGATTAAA-AAGGAGGAGCAGCCGCAAACTCAA-TTATTGGAC-GGGGATAACAATGTACATGAGAACTCAGGTCACTG-ATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGC-TTTGCTGCTTACCATTGTATTGTGCCTTAT-AAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTA-GAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTT</genome_strand>
        <mrna_strand>CTCTTAATGTATATAG.........................................................................ATCCGACTTACATGATCCCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCATTCTTGTCCTCAAAGTTGTGTTCATGGAGCAATGGCAGGCTACACAGGTTTCACCTCATGACTTGTCAATGGTCGCCAAACTTATATACCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCAGCGTCTTCTTTCGTCAACCAATCATCCAAGCTTCTTGCGCGTGAAAGACATTGACAGAGATTAAACAAGGAGGAGCACCCGCAAACTCAACGTGTTGGACTGGGGATAACAATGTACATGAGAACTCACGTCACTGCATACAGTAATTACGAACTTGGCGTGACACACTGAAGTAACTCTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTTGCTGCTTACC-----ATTGTGCCTTATAAAAACAGTCCTAGGAACTTATTTG-TGAAGG-TCTGGGATCTTCTTCATCAGATGTTGGCAGTACGTAACAGATATATTTCTGCCTAATTCATCTAGAGTCCTAAGTTCTTGAAGTGAAATTAGACATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299824" ref_strand="+" ref_description="SGN-E299824 [cLEW-1-M3](-)">
      <seq>tatatagatccgacttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtaataaaaaacttggcgcgacacactgaagtaactttgttgtaatcatttgcctgtgcagtggttctcttgttgtctttgaagctttgctgcttaccagtgtattgtgccttataaaacagtcttaggaacttaattgttgaaggttttgggatcttctgcatcagatgttggcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="75377" stop="77420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75603" g_stop="75609" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75683" g_stop="75837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="162" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75838" i_stop="76940" i_length="1103">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76941" g_stop="77120" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="342" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E299824" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75603" e_stop="75609"/>
          <exon e_start="75683" e_stop="75837"/>
          <exon e_start="76941" e_stop="77120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTA</genome_strand>
        <mrna_strand>TATATAG.........................................................................ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCAGTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353679" ref_strand="+" ref_description="SGN-E353679 [cTOS-10-P3]">
      <seq>ttacatgattcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggatacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaattattggacggggataacaatgtacatgagaactcaggtcactgatacagtaataaaaaacttggcgcgacacactgaagtaactttgttgtaatcatttgcctgtgcagtggttctcttgttgtctttgaagctttgctgcttaccattgtattgtgccttataaaacagtcttangaacttaattgttgaaggttttgggatcttctgcatcagatgttggcagtagaaacagatatatttctgcctaattcatctaaactcctaatttctggaagtgaaattagacagcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="75390" stop="77490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75690" g_stop="75837" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76755" g_stop="77190" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="584" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E353679" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75690" e_stop="75837"/>
          <exon e_start="76755" e_stop="77190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTA</genome_strand>
        <mrna_strand>TTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTANGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416223" ref_strand="-" ref_description="SGN-E416223 [STM-22-P15]">
      <seq>attcgtgctgttccaagtaatgcctctgataatgtatattgcactcttcttgctcaaagttgtgttcatggagcaatggcaggctacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaactgttggatgaggataacaatgtacatgagaactcaggtcactgatacagtaattacgaacttggcgcgacacactgaagtaactctgttgtaatcatttgcctgtgcagtggttctcttgctgtctttaaagctttgctgcttaccattgtgccttataaaacagtcctaggaacttatttgttgaaggttttgggatcttcttcatcagatgttggcagtagtaacagatatatttctgcctaattcatctagagtcctaatttcttgaagtgaaattagacatctttttataaaatattttgtaataaatttaaatagtgagagaatttgctatgcacataaaaaaaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="75397" stop="77554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75697" g_stop="75837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76755" g_stop="77254" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="636" r_length="495" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E416223" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416223" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75697" e_stop="75837"/>
          <exon e_start="76755" e_stop="77254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTATAAAATATTTTGTAATAAATTTAAACAGTGAGAACATTTGCTATGCATATAAATGATGAACTGT</genome_strand>
        <mrna_strand>ATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGCTACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAACTGTTGGATGAGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATTACGAACTTGGCGCGACACACTGAAGTAACTCTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGCTGTCTTTAAAGCTTTGCTGCTTACC-----ATTGTGCCTTATAAAACAGTCCTAGGAACTTATTTGTTGAAGGTTTTGGGATCTTCTTCATCAGATGTTGGCAGTAGTAACAGATATATTTCTGCCTAATTCATCTAGAGTCCTAATTTCTTGAAGTGAAATTAGACATCTTTTTATAAAATATTTTGTAATAAATTTAAATAGTGAGAGAATTTGCTATGCACATAAAAAAAAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415402" ref_strand="-" ref_description="SGN-E415402 [STM-21-C10]">
      <seq>aggctacacaggtttcacctcaggacttgtcaatggtcgccagacttatattccattcaatcgtattaccgagaaacaaaatatggtggttataactgacaggatgtgggcacgtcttctttcgtcaaccaatcagccaagcttcttgcgcgtgaaagacattgaagagattaaaaaggaggagcagccgcaaactcaactgttggatgaggataacaatgtacatgagaactcaggtcactgatacagtaattacgaacttggcgcgacacactgaagtaactctgttgtaatcatttgcctgtgcagtggttctcttgctgtctttaaagctttgctgcttaccattgtgccttataaaacagtcctaggaacttatttgttgaaggttttgggatcttcttcatcagatgttggcagtagtaacagatatatttctgcctaattcatctagagtcctaatttcttgaagtgaaattagacatctttttataaaatattttgtaataaatttaaatagtgagaacatttgctatgctcataaaaaaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="+" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="75477" stop="77543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75777" g_stop="75837" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76755" g_stop="77253" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="554" r_length="493" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="+" ref_id="SGN-E415402" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415402" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75777" e_stop="75837"/>
          <exon e_start="76755" e_stop="77253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAATACACATCCCATGTTAACTTACCCATTCAACATCCTCTTTTTGCATGAGGAAAGTACCCAGGCAGAAGACACATGAGAATGGGTAAATGACAAAAATTTCAATGGTTTTTCATATCATTTGACTACCTCGAGACAATTTGGAGCTGCCTCTTCTCTAAGCACGTCTGCACATGTGAAGGCACACCTCACGAGTTACAAATGCCTTTTAGAACATCGTGCTGGCATGTTATGCACTTTTCTTTATCAGGTTCTGGCTGGGAACTCTCATTTTAGGTCAAGGGTGCAACTGTTTCTTAAATTCTTTCGTTCTTCTACTTAATGATTAGTTCTTCTGTCATATCTCTGGACTCATTGCTTAGTTTTTCTCAAGATTTCCTCATTCCAGGAAAGACATTCGACATGTTAACCCAGTCAGCGGATAATTTTGTTCTATTGTTGATAAAAGATGCATTTCTATGATGTTAAATAAGAGCGCATCTCGACAGCTGAAAACCAAAGCTGTCATTGCCATGGTTTACACCACAGTTACAAGTCCAAGCATATTCTATTTAACACCTCCTTTCATCACCAGCTCTGTTAGGCTTTTCCAGACTTCAAAAAGCACATTTGATTTGCTATGAAGGTTTAAAGCCACTGAATTCTGAACCACAACCGTATATGTTTAAGTTAAACTGATATTTTTGTTTGCAGCGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTATAAAATATTTTGTAATAAATTTAAACAGTGAGAACATTTGCTATGCATATAAATGATGAACTG</genome_strand>
        <mrna_strand>AGGCTACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAACTGTTGGATGAGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATTACGAACTTGGCGCGACACACTGAAGTAACTCTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGCTGTCTTTAAAGCTTTGCTGCTTACC-----ATTGTGCCTTATAAAACAGTCCTAGGAACTTATTTGTTGAAGGTTTTGGGATCTTCTTCATCAGATGTTGGCAGTAGTAACAGATATATTTCTGCCTAATTCATCTAGAGTCCTAATTTCTTGAAGTGAAATTAGACATCTTTTTATAAAATATTTTGTAATAAATTTAAATAGTGAGAACATTTGCTATGCTCATAAA-AAAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350564" ref_strand="+" ref_description="SGN-E350564 [cTOS-5-F17]">
      <seq>ttcaatcgcagacgcactatgtgtggcactctagactatttgccacctgagatggtggaaagtgtggagcatgatgcaaatgtggacatttggagccttggtattctctgctatgaattcttatacggggtgcctccatttgaagcaaaggaacactcagacacatatagaaggattatacaagtggatctaaaatttccttccagaccagtagtctcatcagctgcaaaggatcttattacacagatgctagtcaaggattcttcgcaacgtctgcccttgaagaagttactagagcatccttggattgtacagaatgctgatccttctggtgtttataagggttaatggatacatcttattgcaagttccaatcatatactgcattcttttaaaaaaattttcaagaagcctttgatatatcgataggataaaacattgtcatttacaacgagaggaatgacttatagagcagtaatgaaaaacactttcatgtaatcacattgtatgaatactacttgcctatgttgcttgaaaataagaagaattacttttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="79163" stop="77322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78863" g_stop="78809" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78808" i_stop="78649" i_length="160">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78648" g_stop="78531" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="173" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78530" i_stop="78091" i_length="440">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78090" g_stop="78018" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="246" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78017" i_stop="77935" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77934" g_stop="77622" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="559" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E350564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78863" e_stop="78809"/>
          <exon e_start="78648" e_stop="78531"/>
          <exon e_start="78090" e_stop="78018"/>
          <exon e_start="77934" e_stop="77622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCGCAGACGCACTATGTGTGGCACTCTAGACTATTTGCCACCTGAGATGGGTACGCACGTTGTACTTGATGTAACTTAATGTTCTCATGGCCAGATGCAAATAATCTTTTCTCCAAGTTCATCTGTGCTTTTCACATGGCCGCTTGATTTTGTTAAAAGTAAGTCTAACTGAATTACATGAGTGTGATGGTTGATTGCTGAATATTGCAGTGGAAAGTGTGGAGCATGATGCAAATGTGGACATTTGGAGCCTTGGTATTCTCTGCTATGAATTCTTATACGGGGTGCCTCCATTTGAAGCAAAGGAACACTCAGACACATATAGAAGGTAAACTTTCTCTGCAAATGGAAACTAGTAAGAGTTGCTCTTTATACGACGAATGTGAAACTGAAAAGATAGAAGAGAGAAAATGTTCCATTGGTTTTTTATTTAGCTAGTAAAACAAGTAGGCGTAAAAGAAACAATAGAAGAATCATGAGCCGTTTGACCACGAATAAGTTTGAAGGAGATTATTCAACTTCGAACTTGATATAGAATTTGAAGTTTGAAGAACATACTCAACTTCAAACTTGATATAGAATTTGAAGTTTGAAGAACATGTTCTAGGAGTTTCTCAACTCAGCAAACTTCAATTCATGTCTTAAATACTACTTTAGCTCTCAAATTCTCCTCTTCAACTTAAGTTCAAATATTACATTTTCTCGAAACCTCAACCAAATCATGTCCAAACGGCACTAAATGTCGTAGTTTTTGATGACATTACACAGGATTATACAAGTGGATCTAAAATTTCCTTCCAGACCAGTAGTCTCATCAGCTGCAAAGGATCTTATTACACAGGTTAATTTCAAAATAATTCAGCTACTTTTCAGATACGCTACTAACTTGTGTTTCAGCTAGACTAATATTATGTGGCATAGCAGATGCTAGTCAAGGATTCTTCGCAACGTCTGCCCTTGAAGAAGTTACTAGAGCATCCTTGGATTGTACAGAATGCTGATCCTTCTGGTGTTTATAAGGGTTAATGGATACATCTTATTGCAAGTTCCAATCATATACTGCATTCTTTTAAAAAAATTTTCAAGAAGCCTTTGATATATCGATAGGATAAAACATTGTCATTTACAACGAGAGGAATGACTTATAGAGCAGTAATGAAAAACACTTTCATGTAATCACATTGTATGAATACTACTTGCCTATGTTGCTTGAAAATAAGAAGAATTACTTTTCCAA</genome_strand>
        <mrna_strand>TTCAATCGCAGACGCACTATGTGTGGCACTCTAGACTATTTGCCACCTGAGATGG................................................................................................................................................................TGGAAAGTGTGGAGCATGATGCAAATGTGGACATTTGGAGCCTTGGTATTCTCTGCTATGAATTCTTATACGGGGTGCCTCCATTTGAAGCAAAGGAACACTCAGACACATATAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATACAAGTGGATCTAAAATTTCCTTCCAGACCAGTAGTCTCATCAGCTGCAAAGGATCTTATTACACAG...................................................................................ATGCTAGTCAAGGATTCTTCGCAACGTCTGCCCTTGAAGAAGTTACTAGAGCATCCTTGGATTGTACAGAATGCTGATCCTTCTGGTGTTTATAAGGGTTAATGGATACATCTTATTGCAAGTTCCAATCATATACTGCATTCTTTTAAAAAAATTTTCAAGAAGCCTTTGATATATCGATAGGATAAAACATTGTCATTTACAACGAGAGGAATGACTTATAGAGCAGTAATGAAAAACACTTTCATGTAATCACATTGTATGAATACTACTTGCCTATGTTGCTTGAAAATAAGAAGAATTACTTTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344643" ref_strand="+" ref_description="SGN-E344643 [cTOF-14-H17]">
      <seq>tttatttgattctggaatatgctgccaagggtgaactctataaggagctgcaaaagtgcaaatattttagtgaaaggcgtgctgcaacttatgttgcatcattggcgcgagccctcatatactgtcacgggaagcatgtaatacatagagatattaagccagagaaccttctggttggtgcacagggtgaactaaaaattgcagactttggttggtcggtacacaccttcaatcgcagacgcactatgtgtggcactctagactatttgccacctgagatggtggaaagtgtggagcatgatgcaaatgtggacatttggagccttggtattctctgctatgaattcttatacggggtgcctccatttgaagcaaaggaacactcagacacatatagaaggattatacaagtggatctaaaatttccttccagaccagtagtctcatcagctgcaaaggatcttattacacagatgctagtcaaggattcttcgcaacgtctgcccttgaagaagttactagagcatccttggattgtacagaatgctgatccttctggtgtttataagggttaatggatacatcttattgcaagttccaatcatatactgcattcttttaaaaaaattttcaagaagcctttgatatatcgataggataaaacattgtcatttacaacgagaggaatgacttatagagcagtaatgaaaaacactttcatgtaatcacattgtatgaatactacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0127K17-u0LEx/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12SLe0127K17.1" temp_strand="-" temp_description="C12SLe0127K17.1  AC235760.2 htgs_phase:1 submitted_to_sgn_as:gi|239582797|gb|AC235760.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-127K17, WORKING DRAFT SEQUENCE, 6 unordered pieces">
        <position start="79551" stop="77360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79459" g_stop="79371" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79370" i_stop="79091" i_length="280">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79090" g_stop="78995" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="185" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78994" i_stop="78906" i_length="89">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78905" g_stop="78809" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="282" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78808" i_stop="78649" i_length="160">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78648" g_stop="78531" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="400" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78530" i_stop="78091" i_length="440">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78090" g_stop="78018" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="473" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78017" i_stop="77935" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77934" g_stop="77660" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="748" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0127K17.1" gen_strand="-" ref_id="SGN-E344643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0127K17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79459" e_stop="79371"/>
          <exon e_start="79090" e_stop="78995"/>
          <exon e_start="78905" e_stop="78809"/>
          <exon e_start="78648" e_stop="78531"/>
          <exon e_start="78090" e_stop="78018"/>
          <exon e_start="77934" e_stop="77660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTGATTCTGGAATATGCTGCCAAGGGTGAACTCTATAAGGAGCTGCAAAAGTGCAAATATTTTAGTGAAAGGCGTGCTGCAACTGTGAGTTCTTCTCACACTGTTAGACTCTGCCTTAACATTATTGTGGAACCTTGGGATTCCCTGTTATTCTTTTCCTTTTAAAATTGTTGGGAGTCCAGTTTCTCTTCTTTCTTTTTTTCCGTTTTGGTTCCATTTTAGGTAGCCTTGAATTGAGTCTGAGCAACTAAAATTATACAGATCTTTAACATGTTATGTCATTTTAATATGCTCTCTAATTTACCTACCATTATTTGATGGATCAAAGTGTTTACGTATTTATTTTGTCATGGGCATGGAACAGTATGTTGCATCATTGGCGCGAGCCCTCATATACTGTCACGGGAAGCATGTAATACATAGAGATATTAAGCCAGAGAACCTTCTGGTTGGTGCACAGGTACTTATTTTGCATTCTGTTGGAGTTTATGCTTGCTGTAAAACGGGGCAGGGTTGTTAAACTGTATTTTTCATGGTTTTCTACTATAGGGTGAACTAAAAATTGCAGACTTTGGTTGGTCGGTACACACCTTCAATCGCAGACGCACTATGTGTGGCACTCTAGACTATTTGCCACCTGAGATGGGTACGCACGTTGTACTTGATGTAACTTAATGTTCTCATGGCCAGATGCAAATAATCTTTTCTCCAAGTTCATCTGTGCTTTTCACATGGCCGCTTGATTTTGTTAAAAGTAAGTCTAACTGAATTACATGAGTGTGATGGTTGATTGCTGAATATTGCAGTGGAAAGTGTGGAGCATGATGCAAATGTGGACATTTGGAGCCTTGGTATTCTCTGCTATGAATTCTTATACGGGGTGCCTCCATTTGAAGCAAAGGAACACTCAGACACATATAGAAGGTAAACTTTCTCTGCAAATGGAAACTAGTAAGAGTTGCTCTTTATACGACGAATGTGAAACTGAAAAGATAGAAGAGAGAAAATGTTCCATTGGTTTTTTATTTAGCTAGTAAAACAAGTAGGCGTAAAAGAAACAATAGAAGAATCATGAGCCGTTTGACCACGAATAAGTTTGAAGGAGATTATTCAACTTCGAACTTGATATAGAATTTGAAGTTTGAAGAACATACTCAACTTCAAACTTGATATAGAATTTGAAGTTTGAAGAACATGTTCTAGGAGTTTCTCAACTCAGCAAACTTCAATTCATGTCTTAAATACTACTTTAGCTCTCAAATTCTCCTCTTCAACTTAAGTTCAAATATTACATTTTCTCGAAACCTCAACCAAATCATGTCCAAACGGCACTAAATGTCGTAGTTTTTGATGACATTACACAGGATTATACAAGTGGATCTAAAATTTCCTTCCAGACCAGTAGTCTCATCAGCTGCAAAGGATCTTATTACACAGGTTAATTTCAAAATAATTCAGCTACTTTTCAGATACGCTACTAACTTGTGTTTCAGCTAGACTAATATTATGTGGCATAGCAGATGCTAGTCAAGGATTCTTCGCAACGTCTGCCCTTGAAGAAGTTACTAGAGCATCCTTGGATTGTACAGAATGCTGATCCTTCTGGTGTTTATAAGGGTTAATGGATACATCTTATTGCAAGTTCCAATCATATACTGCATTCTTTTAAAAAAATTTTCAAGAAGCCTTTGATATATCGATAGGATAAAACATTGTCATTTACAACGAGAGGAATGACTTATAGAGCAGTAATGAAAAACACTTTCATGTAATCACATTGTATGAATACTACTTG</genome_strand>
        <mrna_strand>TTTATTTGATTCTGGAATATGCTGCCAAGGGTGAACTCTATAAGGAGCTGCAAAAGTGCAAATATTTTAGTGAAAGGCGTGCTGCAACT........................................................................................................................................................................................................................................................................................TATGTTGCATCATTGGCGCGAGCCCTCATATACTGTCACGGGAAGCATGTAATACATAGAGATATTAAGCCAGAGAACCTTCTGGTTGGTGCACAG.........................................................................................GGTGAACTAAAAATTGCAGACTTTGGTTGGTCGGTACACACCTTCAATCGCAGACGCACTATGTGTGGCACTCTAGACTATTTGCCACCTGAGATGG................................................................................................................................................................TGGAAAGTGTGGAGCATGATGCAAATGTGGACATTTGGAGCCTTGGTATTCTCTGCTATGAATTCTTATACGGGGTGCCTCCATTTGAAGCAAAGGAACACTCAGACACATATAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATACAAGTGGATCTAAAATTTCCTTCCAGACCAGTAGTCTCATCAGCTGCAAAGGATCTTATTACACAG...................................................................................ATGCTAGTCAAGGATTCTTCGCAACGTCTGCCCTTGAAGAAGTTACTAGAGCATCCTTGGATTGTACAGAATGCTGATCCTTCTGGTGTTTATAAGGGTTAATGGATACATCTTATTGCAAGTTCCAATCATATACTGCATTCTTTTAAAAAAATTTTCAAGAAGCCTTTGATATATCGATAGGATAAAACATTGTCATTTACAACGAGAGGAATGACTTATAGAGCAGTAATGAAAAACACTTTCATGTAATCACATTGTATGAATACTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>179</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="755" PGL_stop="8"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="755" e_stop="8"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="755" e_stop="8" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="755" stop="495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="743" stop="8"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="742" stop="176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGA</gDNA_template>
            <first_frame> K  N  G  *  Q  S  S  P  F  S  *  A  K  W  Q  R  C  Q  Y  Y  R  C  R  C  G  G  R  Q  S  Q  S  R  R  E  A  A  A  I  S  S  S  G  G  E  E  P  N  V  Q  P  E  S  H  P  L  P  T  N  S  N  C  L  P  P  T  Q  S  P  P  L  H  L  P  P  V  L  L  L  L  L  F  L  V  T  P  L  H  L  H  R  P  P  P  R  H  N  R  R  R  R  F  L  L  P  I  P  S  K  T  S  G  I  L  R  F  L  T  Q  N  H  P  I  Q  T  H  H  Y  L  R  R  H  Y  T  P  H  R  *  A  Q  S  H  T  L  H  *  K  P  *  Q  K  A  D  L  Q  L  R  S  N  F  L  N  C  K  L  E  F  S  S  T  S  *  W  I  V  H  R  I  Q  Q  R  S  *  *  H  H  N  H  S  L  N  S  I  N  G  V  S  S  A  R  C  G  F  N  F  I  V  E  I  R  S  E  K  K  K  W  I  T  D  E  D  L  V  G  Y  N  G  A  S  E  N  G  *  I  E  K  *  G  S  R  D  Q  S  Y  L  *  R  N  P  W  </first_frame>
            <second_frame>  K  M  A  D  R  V  H  P  S  A  K  P  N  G  N  A  A  N  I  T  G  A  A  A  A  A  V  N  P  K  A  A  A  K  P  P  Q  F  P  P  P  A  A  K  N  Q  M  Y  N  P  N  R  I  P  Y  R  P  T  P  T  A  Y  H  R  H  N  R  R  R  C  T  C  R  R  C  F  C  F  C  C  F  W  S  L  L  F  I  C  T  V  L  L  L  A  T  I  A  G  A  G  F  Y  F  L  F  R  P  K  P  P  A  F  S  V  S  S  L  K  I  I  Q  F  K  L  T  T  T  S  D  D  T  T  H  L  T  V  K  L  N  L  T  L  S  T  K  N  P  N  K  K  L  I  Y  S  Y  D  P  I  S  L  T  V  N  S  N  S  V  L  L  A  N  G  S  F  T  G  F  N  S  G  P  N  N  I  T  I  I  H  S  T  L  S  M  A  S  Q  V  L  D  A  D  S  I  S  S  L  K  S  D  L  K  R  K  N  G  L  P  M  K  I  L  L  D  T  M  V  L  A  K  M  D  K  L  K  S  K  E  V  G  I  R  V  T  C  D  G  I  H  G </second_frame>
            <third_frame>   K  W  L  T  E  F  T  L  Q  L  S  Q  M  A  T  L  P  I  L  P  V  P  L  R  R  P  S  I  P  K  P  P  R  S  R  R  N  F  L  L  R  R  R  R  T  K  C  T  T  R  I  A  S  L  T  D  Q  L  Q  L  P  T  T  D  T  I  A  A  V  A  P  A  A  G  A  S  A  S  V  V  S  G  H  S  S  S  S  A  P  S  S  S  S  P  Q  S  P  A  P  V  S  T  S  Y  S  V  Q  N  L  R  H  S  P  F  P  H  S  K  S  S  N  S  N  S  P  L  P  P  T  T  L  H  T  S  P  L  S  S  I  S  H  S  P  L  K  T  L  T  K  S  *  F  T  V  T  I  Q  F  P  *  L  *  T  R  I  Q  F  Y  *  L  M  D  R  S  Q  D  S  T  A  V  L  I  T  S  Q  S  F  T  Q  L  Y  Q  W  R  L  K  C  S  M  R  I  Q  F  H  R  *  N  Q  I  *  K  E  K  M  D  Y  R  *  R  S  C  W  I  Q  W  C  *  R  K  W  I  N  *  K  V  R  K  S  G  S  E  L  L  V  T  E  S  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="754" stop="8"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADRVHPSAKPNGNAANITGAAAAAVNPKAAAKPPQFPPPAAKNQMYNPNRIPYRPTPTAYHRHNRRRCTCRRCFCFCCFWSLLFICTVLLLATIAGAGFYFLFRPKPPAFSVSSLKIIQFKLTTTSDDTTHLTVKLNLTLSTKNPNKKLIYSYDPISLTVNSNSVLLANGSFTGFNSGPNNITIIHSTLSMASQVLDADSISSLKSDLKRKNGLPMKILLDTMVLAKMDKLKSKEVGIRVTCDGIHG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="495" PGL_stop="755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="495" e_stop="755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="495" e_stop="755" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="495" stop="755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</gDNA_template>
            <first_frame> M  K  R  S  D  Q  K  Q  Q  K  Q  K  H  R  R  Q  V  Q  R  R  R  L  C  R  W  *  A  V  G  V  G  R  *  G  M  R  F  G  L  Y  I  W  F  F  A  A  G  G  G  N  C  G  G  F  A  A  A  L  G  L  T  A  A  A  A  A  P  V  I  L  A  A  L  P  F  G  L  A  E  G  *  T  L  S  A  I  F </first_frame>
            <second_frame>  *  R  G  V  T  R  N  N  R  S  R  S  T  G  G  R  C  N  G  G  D  C  V  G  G  R  Q  L  E  L  V  G  K  G  C  D  S  G  C  T  F  G  S  S  P  P  E  E  E  I  A  A  A  S  R  R  L  W  D  *  R  P  P  Q  R  H  R  *  Y  W  Q  R  C  H  L  A  *  L  K  G  E  L  C  Q  P  F   </second_frame>
            <third_frame>   E  E  E  *  P  E  T  T  E  A  E  A  P  A  A  G  A  T  A  A  I  V  S  V  V  G  S  W  S  W  S  V  R  D  A  I  R  V  V  H  L  V  L  R  R  R  R  R  K  L  R  R  L  R  G  G  F  G  I  D  G  R  R  S  G  T  G  N  I  G  S  V  A  I  W  L  S  *  R  V  N  S  V  S  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="509" stop="730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETTEAEAPAAGATAAIVSVVGSWSWSVRDAIRVVHLVLRRRRRKLRRLRGGFGIDGRRSGTGNIGSVAIWLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8863" PGL_stop="14740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8863" e_stop="9266"/>
            <exon e_start="10098" e_stop="10366"/>
            <exon e_start="10500" e_stop="10592"/>
            <exon e_start="10680" e_stop="10751"/>
            <exon e_start="10872" e_stop="10988"/>
            <exon e_start="13426" e_stop="14740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8863" e_stop="9266" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10098" e_stop="10366" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10367" i_stop="10499" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10500" e_stop="10592" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10593" i_stop="10679" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10680" e_stop="10751" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10752" i_stop="10871" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10872" e_stop="10988" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="10989" i_stop="13425" i_length="2437"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13426" e_stop="14740" e_length="1315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8863" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8866" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8877" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8878" stop="9266"/>
              <exon start="10098" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8884" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8889" stop="9266"/>
              <exon start="10098" stop="10350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8890" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8891" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8892" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8892" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8898" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8898" stop="9266"/>
              <exon start="10098" stop="10313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8899" stop="9266"/>
              <exon start="10098" stop="10202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8900" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8900" stop="9266"/>
              <exon start="10098" stop="10175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8903" stop="9266"/>
              <exon start="10098" stop="10323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8922" stop="9266"/>
              <exon start="10098" stop="10351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9101" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9156" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10988"/>
              <exon start="13426" stop="13535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9172" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10988"/>
              <exon start="13426" stop="13676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9191" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9225" stop="9266"/>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10098" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10293" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10988"/>
              <exon start="13426" stop="13613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10317" stop="10366"/>
              <exon start="10500" stop="10592"/>
              <exon start="10680" stop="10751"/>
              <exon start="10872" stop="10958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10688" stop="10751"/>
              <exon start="10872" stop="10988"/>
              <exon start="13426" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10728" stop="10751"/>
              <exon start="10872" stop="10988"/>
              <exon start="13426" stop="13832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10909" stop="10988"/>
              <exon start="13426" stop="13843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10911" stop="10988"/>
              <exon start="13426" stop="14172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10920" stop="10988"/>
              <exon start="13426" stop="14280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10946" stop="10988"/>
              <exon start="13426" stop="14130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10946" stop="10988"/>
              <exon start="13426" stop="13766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13427" stop="14331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13430" stop="14322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13537" stop="14051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13585" stop="14464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="14236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="13879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="14323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13635" stop="14411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13646" stop="13977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13658" stop="14459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13669" stop="14456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13669" stop="14420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13675" stop="14143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13694" stop="14464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13701" stop="14223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13704" stop="14054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13775" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13823" stop="14442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13835" stop="14530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13836" stop="14113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13894" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13895" stop="14462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13983" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14069" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14250" stop="14653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14263" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14324" stop="14653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14335" stop="14650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14399" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14422" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14465" stop="14740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC : ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG : GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG : GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG : GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG : AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> I  L  F  T  T  T  S  L  T  R  V  S  K  T  L  P  P  L  L  S  F  Y  P  K  S  E  Q  I  E  S  N  N  G  R  R  S  T  V  R  C  T  R  C  R  *  Q  Q  E  E  V  R  *  S  S  G  T  V  S  W  S  S  *  T  Y  W  I  F  C  S  D  R  F  L  I  F  S  *  R  C  C  S  S  F  V  L  Q  Q  C  S  A  A  Y  G  *  F  P  V  G  *  A  E  G  S  G  D  R  C  *  V  V  E  *  C  *  S  E  E  T  *  S  *  *  *  R  R  W  C  R  W  I  *  F  L  *  T :   Q  A  H  C  Y  S  F  S  Y  K  F  I  W  L  S  G  A  E  Q  E  D  *  N  T  K  W  Q  S  W  C  D  Y  R  K  R  W  G  D  H  Q  V  S  S  T  P  V  W  S  Q  N  S  G  Y  *  R  H  G  C  *  S  *  F  S  K  Q  S  S  *  T  H  G  Y  S  R  P  N  C  *  G  *  T  V  D  *  *  G  S  F  *   : G  R  F  W  W  F  W  S  S  F  P  K  I  T  W  T  A  I  W  R  G  T  V  F  L  E  S  P  *  Q  Q   : G  W  S  C  Y  W  K  R  R  *  N  Y  K  K  Y  A  G  K  N  W  S  A  Y  S   : G  D  P  F  A  L  A  S  W  *  H  I  A  G  K  N  S  P  N  *  R  V  K  *  T  D  *  G  C  *  A  A  G  V  *  S  N  *  R   : E  S  C  *  E  S  R  D  V  G  R  I  S  T  G  L  S  G  P  A  S  Y  K  L  G  P  S  W  C  T  Y  A  T  I  W  L  W  L  W  S  A  W  C  I  S  F  S  T  I  L  P  W  L  P  S  S  T  C  L  C  W  I  C  L  W  L  G  S  E  W  C  S  K  S  T  I  S  G  R  R  V  *  L  L  Q  P  T  G  S  T  T  T  A  A  S  C  W  R  F  S  C  F  N  *  *  *  C  L  W  L  Q  P  A  T  C  L  R  L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </first_frame>
            <second_frame>  F  S  L  Q  P  L  L  S  L  G  F  R  K  P  Y  R  R  C  S  P  F  T  P  N  L  S  K  S  K  A  T  M  A  E  E  A  Q  Y  G  A  P  D  A  G  N  N  K  R  K  Y  D  D  Q  A  A  P  S  P  G  P  R  R  P  T  G  F  S  A  P  I  A  S  L  S  S  P  D  G  A  A  P  P  S  S  Y  N  N  V  P  P  P  M  D  D  F  Q  L  A  K  Q  K  A  Q  E  I  A  A  R  L  L  N  S  A  E  A  K  K  P  R  V  D  N  N  G  G  G  A  G  G  Y  D  S  Y  E   : H  K  P  I  V  T  P  S  V  T  S  S  Y  G  Y  P  G  Q  S  K  K  I  E  I  P  N  G  R  V  G  V  I  I  G  K  G  G  E  T  I  K  Y  L  Q  L  Q  S  G  A  K  I  Q  V  T  R  D  M  D  A  D  P  N  S  Q  N  R  A  V  E  L  M  G  T  P  D  Q  I  A  K  A  E  Q  L  I  N  E  V  L  S  E  :  A  D  S  G  G  S  G  L  V  S  R  R  L  P  G  Q  Q  S  G  G  E  Q  F  S  L  K  V  P  N  N  K  :  V  G  L  V  I  G  K  G  G  E  T  I  K  S  M  Q  A  R  T  G  A  R  I  Q  :  V  I  P  L  H  L  P  P  G  D  T  S  Q  E  R  T  V  Q  I  D  G  S  S  E  Q  I  E  A  A  K  Q  L  V  Y  E  V  I  S  E  :  N  R  A  R  N  Q  G  M  S  G  G  Y  Q  Q  G  Y  Q  A  R  P  P  T  S  W  A  P  P  G  A  P  M  Q  Q  S  G  Y  G  Y  G  Q  P  G  A  Y  P  S  Q  P  S  Y  P  G  Y  P  P  Q  P  A  S  A  G  Y  A  S  G  W  D  Q  S  G  A  Q  N  Q  Q  S  Q  A  G  G  Y  D  Y  Y  N  Q  Q  A  P  Q  Q  Q  Q  Q  A  A  G  G  S  A  A  S  T  D  N  S  A  Y  G  Y  N  Q  Q  P  A  S  G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </second_frame>
            <third_frame>   S  L  Y  N  H  F  S  H  *  G  F  E  N  P  T  A  A  A  L  L  L  P  Q  I  *  A  N  R  K  Q  Q  W  Q  K  K  H  S  T  V  H  Q  M  P  V  T  T  R  G  S  T  M  I  K  R  H  R  L  L  V  L  V  D  L  L  D  F  L  L  R  S  L  P  Y  L  L  L  T  V  L  L  L  L  R  L  T  T  M  F  R  R  L  W  M  I  S  S  W  L  S  R  R  L  R  R  S  L  L  G  C  *  I  V  L  K  R  R  N  L  E  L  I  I  T  A  V  V  P  V  D  M  I  P  M  N  :  T  S  P  L  L  L  L  Q  L  Q  V  H  M  V  I  R  G  R  A  R  R  L  K  Y  Q  M  A  E  L  V  *  L  *  E  K  V  G  R  P  S  S  I  F  N  S  S  L  E  P  K  F  R  L  L  E  T  W  M  L  I  L  I  L  K  T  E  Q  L  N  S  W  V  L  Q  T  K  L  L  R  L  N  S  *  L  M  R  F  F  L  R :   P  I  L  V  V  L  V  *  F  P  E  D  Y  L  D  S  N  L  E  G  N  S  F  P  *  K  S  L  T  T  R :   L  V  L  L  L  E  K  E  V  K  L  *  K  V  C  R  Q  E  L  E  R  V  F  R :   *  S  L  C  T  C  L  L  V  T  H  R  R  K  E  Q  S  K  L  T  G  Q  V  N  R  L  R  L  L  S  S  W  C  M  K  *  L  A  R :   I  V  L  G  I  K  G  C  R  E  D  I  N  R  V  I  R  P  G  L  L  Q  A  G  P  L  L  V  H  L  C  N  N  L  V  M  A  M  V  S  L  V  H  I  L  L  N  H  L  T  L  A  T  L  L  N  L  P  L  L  D  M  P  L  A  G  I  R  V  V  L  K  I  N  N  L  R  Q  E  G  M  I  T  T  T  N  R  L  H  N  N  S  S  K  L  L  E  V  Q  L  L  Q  L  I  I  V  P  M  V  T  T  S  N  L  P  Q  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8864" stop="9266"/>
                    <exon start="10098" stop="10366"/>
                    <exon start="10500" stop="10592"/>
                    <exon start="10680" stop="10751"/>
                    <exon start="10872" stop="10988"/>
                    <exon start="13426" stop="14526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2052</number_coding_nucleotides>
                  <number_encoded_amino_acids>684</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLQPLLSLGFRKPYRRCSPFTPNLSKSKATMAEEAQYGAPDAGNNKRKYDDQAAPSPGPRRPTGFSAPIASLSSPDGAAPPSSYNNVPPPMDDFQLAKQKAQEIAARLLNSAEAKKPRVDNNGGGAGGYDSYEHKPIVTPSVTSSYGYPGQSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQNRAVELMGTPDQIAKAEQLINEVLSEADSGGSGLVSRRLPGQQSGGEQFSLKVPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSQERTVQIDGSSEQIEAAKQLVYEVISENRARNQGMSGGYQQGYQARPPTSWAPPGAPMQQSGYGYGQPGAYPSQPSYPGYPPQPASAGYASGWDQSGAQNQQSQAGGYDYYNQQAPQQQQQAAGGSAASTDNSAYGYNQQPASGYSQGQAYAQDGYGGYHVPAPHSGGYQGSGYEQQQGYSSTAGYGNASNPTSDGQNSSYGAQTDGSQAPPPASATAQQGYHSGQQPSPNPSYPSQGSAQAGYGVPPTSQGGYGTQPAGGYAASYGAPQAQKPPTQASYGQPQQSPSAQAGYAQPAPAQPGYPQPAAQAQSGYAQADPNAQRPPSSAYGAPPAQPGYGAQSYGAPPSYGQQPPPYNSAYGAYSQPQAYASEAAPTAQSVPPSGGVAKASPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12264" e_stop="14740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12264" e_stop="14740" e_length="2477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12264" stop="12946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12381" stop="12774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12418" stop="13135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12618" stop="13190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13006" stop="13811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13007" stop="13758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13399" stop="14233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13427" stop="14331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13430" stop="14322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13537" stop="14051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13585" stop="14464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="14236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="13879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="14323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13635" stop="14411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13646" stop="13977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13658" stop="14459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13669" stop="14456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13669" stop="14420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13675" stop="14143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13694" stop="14464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13701" stop="14223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13704" stop="14054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13775" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13823" stop="14442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13835" stop="14530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13836" stop="14113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13894" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13895" stop="14462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13983" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14069" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14250" stop="14653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14263" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14324" stop="14653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14335" stop="14650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14399" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14422" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14465" stop="14740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> S  K  *  G  T  D  F  A  R  I  C  N  G  G  N  *  D  L  L  R  F  I  I  V  I  F  *  V  S  I  L  R  Y  Y  M  N  V  L  H  K  C  C  N  K  E  C  L  V  *  L  S  I  V  D  V  I  T  Q  P  G  G  N  F  F  V  P  W  D  F  L  V  L  Y  L  V  S  L  K  K  N  P  L  L  S  L  L  S  H  *  Y  L  I  F  P  F  S  I  D  L  L  V  M  A  M  K  I  E  L  P  L  R  F  G  V  L  *  G  S  L  V  C  Q  F  C  V  F  T  S  *  F  L  A  V  L  L  G  S  H  F  L  L  S  K  N  G  I  I  A  L  Q  V  *  C  G  M  *  E  S  A  F  W  R  C  *  *  *  H  L  L  S  L  C  G  F  P  C  F  W  C  P  C  G  P  T  L  P  N  P  I  H  G  V  I  A  G  L  R  T  S  R  C  T  A  L  A  A  L  R  T  H  H  I  Y  S  *  Y  *  S  L  S  F  L  *  F  A  C  H  *  N  S  Y  T  T  S  L  G  I  *  I  *  I  H  H  I  I  I  I  *  N  S  L  L  M  T  Y  N  E  Q  I  T  T  S  Y  Y  Y  W  *  S  P  L  A  Y  S  G  S  L  V  I  L  *  W  Y  L  A  I  L  R  V  I  L  P  T  Y  R  M  F  L  F  F  A  F  L  L  L  Y  P  S  L  Q  I  G  *  G  *  A  S  A  R  S  F  V  P  P  N  Q  *  V  L  H  L  S  *  C  I  P  N  I  N  C  Y  M  F  V  V  *  V  T  V  S  S  A  M  I  M  L  P  G  C  G  L  V  C  P  C  N  V  S  Y  L  N  M  L  E  S  I  I  F  L  V  S  L  D  D  N  S  C  A  E  S  C  *  E  S  R  D  V  G  R  I  S  T  G  L  S  G  P  A  S  Y  K  L  G  P  S  W  C  T  Y  A  T  I  W  L  W  L  W  S  A  W  C  I  S  F  S  T  I  L  P  W  L  P  S  S  T  C  L  C  W  I  C  L  W  L  G  S  E  W  C  S  K  S  T  I  S  G  R  R  V  *  L  L  Q  P  T  G  S  T  T  T  A  A  S  C  W  R  F  S  C  F  N  *  *  *  C  L  W  L  Q  P  A  T  C  L  R  L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </first_frame>
            <second_frame>  V  N  E  G  L  I  L  L  G  F  A  M  E  E  T  K  I  C  *  D  L  S  L  L  S  F  R  C  Q  S  *  D  I  I  *  M  Y  Y  I  S  V  V  T  K  S  V  W  C  N  Y  L  L  L  M  S  L  L  S  Q  G  A  T  F  L  C  L  G  I  F  *  C  F  I  W  F  L  S  R  K  I  H  Y  F  H  Y  *  A  T  S  I  *  F  S  L  S  P  *  T  F  *  S  W  L  *  R  S  N  F  L  *  G  L  E  C  F  K  D  H  *  Y  V  S  S  V  C  S  R  L  D  S  *  Q  Y  C  *  V  R  I  S  Y  Y  Q  K  M  E  S  L  P  F  K  C  D  V  A  C  R  N  L  L  S  G  G  V  N  N  D  I  Y  Y  H  S  V  V  F  L  V  F  G  V  P  V  V  Q  L  F  R  T  Q  F  T  E  *  *  L  V  F  E  P  Q  G  A  L  L  L  L  L  C  E  H  I  I  F  I  L  N  I  E  V  C  R  F  S  N  S  H  V  I  E  T  V  I  Q  L  L  W  V  Y  K  F  E  Y  T  I  S  L  L  Y  K  I  L  C  L  *  H  I  M  N  R  L  L  H  H  I  I  I  G  K  V  P  W  L  I  V  V  P  W  S  S  Y  S  G  I  L  L  S  *  E  L  S  C  L  H  I  E  C  F  C  F  L  L  F  C  F  C  I  L  H  F  K  *  G  E  D  E  H  L  P  G  V  L  Y  L  P  T  S  K  S  Y  I  C  L  D  A  Y  L  I  L  I  V  I  C  L  W  Y  K  L  L  F  H  L  L  *  L  C  Y  L  G  V  A  *  S  A  L  A  M  *  V  I  *  I  C  L  N  Q  S  Y  S  W  L  V  *  T  T  I  L  V  Q  N  R  A  R  N  Q  G  M  S  G  G  Y  Q  Q  G  Y  Q  A  R  P  P  T  S  W  A  P  P  G  A  P  M  Q  Q  S  G  Y  G  Y  G  Q  P  G  A  Y  P  S  Q  P  S  Y  P  G  Y  P  P  Q  P  A  S  A  G  Y  A  S  G  W  D  Q  S  G  A  Q  N  Q  Q  S  Q  A  G  G  Y  D  Y  Y  N  Q  Q  A  P  Q  Q  Q  Q  Q  A  A  G  G  S  A  A  S  T  D  N  S  A  Y  G  Y  N  Q  Q  P  A  S  G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </second_frame>
            <third_frame>   *  M  R  D  *  F  C  *  D  L  Q  W  R  K  L  R  F  V  E  I  Y  H  C  Y  L  L  G  V  N  L  E  I  L  Y  E  C  T  T  *  V  L  *  Q  R  V  F  G  V  I  I  Y  C  *  C  H  Y  S  A  R  G  Q  L  F  C  A  L  G  F  S  S  A  L  F  G  F  S  Q  E  K  S  I  T  F  I  T  K  P  L  V  S  D  F  P  F  L  H  R  P  F  S  H  G  Y  E  D  R  T  S  F  E  V  W  S  A  L  R  I  I  S  M  S  V  L  C  V  H  V  L  I  L  S  S  T  V  R  F  A  F  L  I  I  K  K  W  N  H  C  P  S  S  V  M  W  H  V  G  I  C  F  L  A  V  L  I  M  T  S  I  I  T  L  W  F  S  L  F  L  V  S  L  W  S  N  S  S  E  P  N  S  R  S  D  S  W  S  S  N  L  K  V  H  C  S  C  C  F  A  N  T  S  Y  L  F  L  I  L  K  F  V  V  S  L  I  R  M  S  L  K  Q  L  Y  N  F  S  G  Y  I  N  L  N  T  P  Y  H  Y  Y  I  K  F  S  A  Y  D  I  *  *  T  D  Y  Y  I  I  L  L  L  V  K  S  L  G  L  *  W  F  L  G  H  L  I  V  V  S  C  Y  L  K  S  Y  L  A  Y  I  *  N  V  F  V  F  C  F  F  A  F  V  S  F  T  S  N  R  V  R  M  S  I  C  Q  E  F  C  T  S  Q  P  V  S  L  T  S  V  L  M  H  T  *  Y  *  L  L  Y  V  C  G  I  S  Y  C  F  I  C  Y  D  Y  A  T  W  V  W  L  S  L  P  L  Q  C  E  L  F  K  Y  A  *  I  N  H  I  L  G  *  F  R  R  Q  F  L  C  R  I  V  L  G  I  K  G  C  R  E  D  I  N  R  V  I  R  P  G  L  L  Q  A  G  P  L  L  V  H  L  C  N  N  L  V  M  A  M  V  S  L  V  H  I  L  L  N  H  L  T  L  A  T  L  L  N  L  P  L  L  D  M  P  L  A  G  I  R  V  V  L  K  I  N  N  L  R  Q  E  G  M  I  T  T  T  N  R  L  H  N  N  S  S  K  L  L  E  V  Q  L  L  Q  L  I  I  V  P  M  V  T  T  S  N  L  P  Q  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13403" stop="14602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRQFLCRIVLGIKGCREDINRVIRPGLLQAGPLLVHLCNNLVMAMVSLVHILLNHLTLATLLNLPLLDMPLAGIRVVLKINNLRQEGMITTTNRLHNNSSKLLEVQLLQLIIVPMVTTSNLPQVTVKDKLMPRMAMVDIMYLPLILVGIRVLVMSSNKAIALLLAMGMPQTQHQTARTRRMVPKLMAVKHLHQHQPQLNKDIILASSPALILATHLKALLRLDMGCPQLLKVGMVHSQLEAMLLVMGLLRLKNLLLRQAMVNHSSLLVHKLVMPSLPQRNPGILNQLLKLNQVMPRLIPTPSDLPLLHMVLHQLSQVMVPSLMALRLVMDSSHLLTTAPMVLTPSHKHMLLKQLQLRSLFHLVVGLPKLHLRVNISLFRMFLGESFKNNFLLLLLSYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13408" stop="14526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTILVQNRARNQGMSGGYQQGYQARPPTSWAPPGAPMQQSGYGYGQPGAYPSQPSYPGYPPQPASAGYASGWDQSGAQNQQSQAGGYDYYNQQAPQQQQQAAGGSAASTDNSAYGYNQQPASGYSQGQAYAQDGYGGYHVPAPHSGGYQGSGYEQQQGYSSTAGYGNASNPTSDGQNSSYGAQTDGSQAPPPASATAQQGYHSGQQPSPNPSYPSQGSAQAGYGVPPTSQGGYGTQPAGGYAASYGAPQAQKPPTQASYGQPQQSPSAQAGYAQPAPAQPGYPQPAAQAQSGYAQADPNAQRPPSSAYGAPPAQPGYGAQSYGAPPSYGQQPPPYNSAYGAYSQPQAYASEAAPTAQSVPPSGGVAKASPPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12425" stop="13030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHYSARGQLFCALGFSSALFGFSQEKSITFITKPLVSDFPFLHRPFSHGYEDRTSFEVWSALRIISMSVLCVHVLILSSTVRFAFLIIKKWNHCPSSVMWHVGICFLAVLIMTSIITLWFSLFLVSLWSNSSEPNSRSDSWSSNLKVHCSCCFANTSYLFLILKFVVSLIRMSLKQLYNFSGYINLNTPYHYYIKFSAYDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8889" e_stop="9266"/>
            <exon e_start="10098" e_stop="10354"/>
            <exon e_start="13775" e_stop="14740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.235" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8889" e_stop="9266" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="9267" i_stop="10097" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="10098" e_stop="10354" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.235" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10355" i_stop="13774" i_length="3420"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="13775" e_stop="14740" e_length="966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8889" stop="9266"/>
              <exon start="10098" stop="10350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8898" stop="9266"/>
              <exon start="10098" stop="10313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8899" stop="9266"/>
              <exon start="10098" stop="10202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8900" stop="9266"/>
              <exon start="10098" stop="10175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8903" stop="9266"/>
              <exon start="10098" stop="10323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8922" stop="9266"/>
              <exon start="10098" stop="10351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10151" stop="10354"/>
              <exon start="13775" stop="14092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13775" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13823" stop="14442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13835" stop="14530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13836" stop="14113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13894" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13895" stop="14462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13983" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14069" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14250" stop="14653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14262" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14263" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14324" stop="14653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14335" stop="14650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14399" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14422" stop="14695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14465" stop="14740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC : ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAG : GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> *  G  F  E  N  P  T  A  A  A  L  L  L  P  Q  I  *  A  N  R  K  Q  Q  W  Q  K  K  H  S  T  V  H  Q  M  P  V  T  T  R  G  S  T  M  I  K  R  H  R  L  L  V  L  V  D  L  L  D  F  L  L  R  S  L  P  Y  L  L  L  T  V  L  L  L  L  R  L  T  T  M  F  R  R  L  W  M  I  S  S  W  L  S  R  R  L  R  R  S  L  L  G  C  *  I  V  L  K  R  R  N  L  E  L  I  I  T  A  V  V  P  V  D  M  I  P  M  N  :  T  S  P  L  L  L  L  Q  L  Q  V  H  M  V  I  R  G  R  A  R  R  L  K  Y  Q  M  A  E  L  V  *  L  *  E  K  V  G  R  P  S  S  I  F  N  S  S  L  E  P  K  F  R  L  L  E  T  W  M  L  I  L  I  L  K  T  E  Q  L  N  S  W  V  L  Q  T  K  L  L  R  L  N  S  *  L  M  R :   L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </first_frame>
            <second_frame>  R  V  S  K  T  L  P  P  L  L  S  F  Y  P  K  S  E  Q  I  E  S  N  N  G  R  R  S  T  V  R  C  T  R  C  R  *  Q  Q  E  E  V  R  *  S  S  G  T  V  S  W  S  S  *  T  Y  W  I  F  C  S  D  R  F  L  I  F  S  *  R  C  C  S  S  F  V  L  Q  Q  C  S  A  A  Y  G  *  F  P  V  G  *  A  E  G  S  G  D  R  C  *  V  V  E  *  C  *  S  E  E  T  *  S  *  *  *  R  R  W  C  R  W  I  *  F  L  *  T :   Q  A  H  C  Y  S  F  S  Y  K  F  I  W  L  S  G  A  E  Q  E  D  *  N  T  K  W  Q  S  W  C  D  Y  R  K  R  W  G  D  H  Q  V  S  S  T  P  V  W  S  Q  N  S  G  Y  *  R  H  G  C  *  S  *  F  S  K  Q  S  S  *  T  H  G  Y  S  R  P  N  C  *  G  *  T  V  D  *  *   : G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </second_frame>
            <third_frame>   G  F  R  K  P  Y  R  R  C  S  P  F  T  P  N  L  S  K  S  K  A  T  M  A  E  E  A  Q  Y  G  A  P  D  A  G  N  N  K  R  K  Y  D  D  Q  A  A  P  S  P  G  P  R  R  P  T  G  F  S  A  P  I  A  S  L  S  S  P  D  G  A  A  P  P  S  S  Y  N  N  V  P  P  P  M  D  D  F  Q  L  A  K  Q  K  A  Q  E  I  A  A  R  L  L  N  S  A  E  A  K  K  P  R  V  D  N  N  G  G  G  A  G  G  Y  D  S  Y  E   : H  K  P  I  V  T  P  S  V  T  S  S  Y  G  Y  P  G  Q  S  K  K  I  E  I  P  N  G  R  V  G  V  I  I  G  K  G  G  E  T  I  K  Y  L  Q  L  Q  S  G  A  K  I  Q  V  T  R  D  M  D  A  D  P  N  S  Q  N  R  A  V  E  L  M  G  T  P  D  Q  I  A  K  A  E  Q  L  I  N  E  :  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8891" stop="9266"/>
                    <exon start="10098" stop="10354"/>
                    <exon start="13775" stop="14602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1458</number_coding_nucleotides>
                  <number_encoded_amino_acids>486</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRKPYRRCSPFTPNLSKSKATMAEEAQYGAPDAGNNKRKYDDQAAPSPGPRRPTGFSAPIASLSSPDGAAPPSSYNNVPPPMDDFQLAKQKAQEIAARLLNSAEAKKPRVDNNGGGAGGYDSYEHKPIVTPSVTSSYGYPGQSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQNRAVELMGTPDQIAKAEQLINEVTVKDKLMPRMAMVDIMYLPLILVGIRVLVMSSNKAIALLLAMGMPQTQHQTARTRRMVPKLMAVKHLHQHQPQLNKDIILASSPALILATHLKALLRLDMGCPQLLKVGMVHSQLEAMLLVMGLLRLKNLLLRQAMVNHSSLLVHKLVMPSLPQRNPGILNQLLKLNQVMPRLIPTPSDLPLLHMVLHQLSQVMVPSLMALRLVMDSSHLLTTAPMVLTPSHKHMLLKQLQLRSLFHLVVGLPKLHLRVNISLFRMFLGESFKNNFLLLLLSYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="11284" e_stop="12137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="11284" e_stop="12137" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11284" stop="12137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAAT</gDNA_template>
            <first_frame> I  N  F  F  S  S  G  E  I  C  *  H  I  K  L  Q  F  T  L  L  L  E  H  H  E  *  E  I  N  N  P  I  Y  D  F  I  R  I  F  M  I  C  I  C  K  F  H  V  C  V  L  L  S  I  T  Y  I  R  P  C  I  A  R  I  H  S  V  C  R  S  F  C  Q  S  S  S  W  S  T  A  S  V  N  G  N  S  S  S  C  Q  *  P  L  D  E  G  D  W  L  L  L  C  F  I  F  W  K  E  V  F  L  L  I  L  E  I  C  F  L  V  A  K  *  V  F  A  S  I  L  L  H  S  *  L  *  L  H  Y  F  K  *  K  D  *  *  I  V  I  H  I  I  Y  L  *  C  D  M  T  P  T  Y  V  N  L  F  S  H  Q  F  F  L  I  S  W  M  L  L  E  Q  E  I  S  F  *  P  K  A  L  S  G  L  R  *  L  I  K  M  F  S  C  L  N  V  Y  *  S  I  F  H  W  T  L  D  V  V  I  F  V  R  R  R  F  W  G  G  S  P  *  R  *  L  S  L  S  K  N  F  P  *  Y  *  G  Y  I  I  I  *  D  V  Q  *  L  L  V  *  W  F  G  Y  L  V  N  I  K  R  Q  H  I  T  I  L  V  N  F  V  S  D  H  *  Y  Y  Y  W  K   </first_frame>
            <second_frame>  L  I  F  S  A  V  V  K  F  A  D  T  L  S  Y  S  L  L  C  C  *  S  I  M  N  E  K  L  I  I  Q  Y  M  T  S  L  G  S  S  *  S  V  S  A  S  F  M  Y  V  C  C  C  Q  L  P  I  S  V  L  A  S  L  E  F  I  V  F  A  D  H  F  A  S  P  L  L  G  R  Q  R  Q  L  M  G  I  L  V  H  V  S  D  P  W  M  K  E  I  G  S  C  C  A  S  F  F  G  R  K  Y  S  Y  *  Y  W  R  Y  A  F  *  L  Q  S  R  S  L  R  V  F  C  S  T  L  N  Y  S  S  I  T  L  N  R  R  I  N  R  L  L  S  T  *  Y  I  C  N  V  T  *  H  L  H  M  S  T  F  F  P  I  S  S  F  *  L  V  G  C  C  W  S  K  R  S  V  S  N  P  R  H  Y  Q  V  *  D  D  L  S  K  C  L  V  A  S  M  S  I  D  L  Y  F  I  G  L  *  M  L  *  F  L  *  G  A  G  F  G  E  V  L  L  E  G  N  *  V  C  L  K  I  F  R  N  I  E  D  I  L  *  S  E  M  C  N  N  S  W  F  N  G  L  G  T  W  L  I  S  R  D  N  I  *  L  F  W  L  I  L  Y  L  I  T  D  I  I  I  G  K  </second_frame>
            <third_frame>   *  F  F  Q  Q  W  *  N  L  L  T  H  *  V  T  V  Y  F  V  A  R  A  S  *  M  R  N  *  *  S  N  I  *  L  H  *  D  L  H  D  L  Y  L  Q  V  S  C  M  C  V  A  V  N  Y  L  Y  P  S  L  H  R  *  N  S  *  C  L  Q  I  I  L  P  V  L  F  L  V  D  S  V  S  *  W  E  F  *  F  M  S  V  T  P  G  *  R  R  L  A  L  A  V  L  H  F  L  E  G  S  I  L  I  N  I  G  D  M  L  S  S  C  K  V  G  L  C  E  Y  F  A  P  L  L  T  I  A  P  L  L  *  I  E  G  L  I  D  C  Y  P  H  N  I  S  V  M  *  H  D  T  Y  I  C  Q  P  F  F  P  S  V  L  F  N  *  L  D  V  A  G  A  R  D  Q  F  L  T  Q  G  I  I  R  F  K  M  T  Y  Q  N  V  *  L  P  Q  C  L  L  I  Y  I  S  L  D  F  R  C  C  D  F  C  E  A  Q  V  L  G  R  F  S  L  K  V  T  K  S  V  *  K  F  S  V  I  L  R  I  Y  Y  N  L  R  C  A  I  T  L  G  L  M  V  W  V  L  G  *  Y  Q  E  T  T  Y  N  Y  S  G  *  F  C  I  *  S  L  I  L  L  L  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11405" stop="11620"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSASFMYVCCCQLPISVLASLEFIVFADHFASPLLGRQRQLMGILVHVSDPWMKEIGSCCASFFGRKYSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11362" stop="11556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EINNPIYDFIRIFMICICKFHVCVLLSITYIRPCIARIHSVCRSFCQSSSWSTASVNGNSSSCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9100" PGL_stop="8891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9100" e_stop="8891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="9100" e_stop="8891" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9100" stop="8891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACCGTCAGGAGAAGATAAGGAAGCGATCGGAGCAGAAAATCCAGTAGGTCTACGAGGACCAGGAGACGGTGCCGCTTGATCATCGTACTTCCTCTTGTTGTTACCGGCATCTGGTGCACCGTACTGTGCTTCTTCTGCCATTGTTGCTTTCGATTTGCTCAGATTTGGGGTAAAAGGAGAGCAGCGGCGGTAGGGTTTTCGAAACCC</gDNA_template>
            <first_frame> S  T  V  R  R  R  *  G  S  D  R  S  R  K  S  S  R  S  T  R  T  R  R  R  C  R  L  I  I  V  L  P  L  V  V  T  G  I  W  C  T  V  L  C  F  F  C  H  C  C  F  R  F  A  Q  I  W  G  K  R  R  A  A  A  V  G  F  S  K  P </first_frame>
            <second_frame>  A  P  S  G  E  D  K  E  A  I  G  A  E  N  P  V  G  L  R  G  P  G  D  G  A  A  *  S  S  Y  F  L  L  L  L  P  A  S  G  A  P  Y  C  A  S  S  A  I  V  A  F  D  L  L  R  F  G  V  K  G  E  Q  R  R  *  G  F  R  N   </second_frame>
            <third_frame>   H  R  Q  E  K  I  R  K  R  S  E  Q  K  I  Q  *  V  Y  E  D  Q  E  T  V  P  L  D  H  R  T  S  S  C  C  Y  R  H  L  V  H  R  T  V  L  L  L  P  L  L  L  S  I  C  S  D  L  G  *  K  E  S  S  G  G  R  V  F  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0127K17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="14605" PGL_stop="13956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14605" e_stop="13956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="14605" e_stop="13956" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14605" stop="13956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCTAAAGATAACTAAGCAACAAAAGCAAGAAATTGTTTTTAAAAGATTCACCCAAAAACATACGAAAGAGACTGATATTAACTCGGAGGTGAAGCTTTGGCAACCCCACCACTAGGTGGAACAGACTGCGCAGTTGGAGCTGCTTCAGAAGCATATGCTTGTGGCTGGGAGTAAGCACCATAGGCGCTGTTGTAAGGAGGTGGCTGCTGTCCATAACTAGGCGGAGCGCCATAAGACTGGGCACCATAACCTGGCTGAGCTGGTGGAGCACCATATGCAGAAGAGGGAGGTCGCTGGGCGTTGGGATCAGCCTGGGCATAACCTGATTGAGCTTGAGCAGCTGGTTGAGGATACCCGGGTTGCGCTGGGGCAGGCTGGGCATAACCAGCTTGTGCACTAGGAGACTGCTGTGGTTGACCATAGCTTGCCTGAGTAGGAGGTTTTTGAGCCTGAGGAGCCCCATAACTAGCAGCATAGCCTCCAGCTGGCTGTGTACCATACCCACCTTGAGAAGTTGGGGGCACCCCATATCCAGCCTGAGCAGAGCCTTGAGATGGGTAGCTAGGATTAGGGCTGGGCTGCTGGCCAGAATGATATCCTTGTTGAGCTGTGGCTGATGCTGGTGGAGGTGCTTGACTGCCATCAGTT</gDNA_template>
            <first_frame> N  L  K  I  T  K  Q  Q  K  Q  E  I  V  F  K  R  F  T  Q  K  H  T  K  E  T  D  I  N  S  E  V  K  L  W  Q  P  H  H  *  V  E  Q  T  A  Q  L  E  L  L  Q  K  H  M  L  V  A  G  S  K  H  H  R  R  C  C  K  E  V  A  A  V  H  N  *  A  E  R  H  K  T  G  H  H  N  L  A  E  L  V  E  H  H  M  Q  K  R  E  V  A  G  R  W  D  Q  P  G  H  N  L  I  E  L  E  Q  L  V  E  D  T  R  V  A  L  G  Q  A  G  H  N  Q  L  V  H  *  E  T  A  V  V  D  H  S  L  P  E  *  E  V  F  E  P  E  E  P  H  N  *  Q  H  S  L  Q  L  A  V  Y  H  T  H  L  E  K  L  G  A  P  H  I  Q  P  E  Q  S  L  E  M  G  S  *  D  *  G  W  A  A  G  Q  N  D  I  L  V  E  L  W  L  M  L  V  E  V  L  D  C  H  Q   </first_frame>
            <second_frame>  T  *  R  *  L  S  N  K  S  K  K  L  F  L  K  D  S  P  K  N  I  R  K  R  L  I  L  T  R  R  *  S  F  G  N  P  T  T  R  W  N  R  L  R  S  W  S  C  F  R  S  I  C  L  W  L  G  V  S  T  I  G  A  V  V  R  R  W  L  L  S  I  T  R  R  S  A  I  R  L  G  T  I  T  W  L  S  W  W  S  T  I  C  R  R  G  R  S  L  G  V  G  I  S  L  G  I  T  *  L  S  L  S  S  W  L  R  I  P  G  L  R  W  G  R  L  G  I  T  S  L  C  T  R  R  L  L  W  L  T  I  A  C  L  S  R  R  F  L  S  L  R  S  P  I  T  S  S  I  A  S  S  W  L  C  T  I  P  T  L  R  S  W  G  H  P  I  S  S  L  S  R  A  L  R  W  V  A  R  I  R  A  G  L  L  A  R  M  I  S  L  L  S  C  G  *  C  W  W  R  C  L  T  A  I  S  </second_frame>
            <third_frame>   P  K  D  N  *  A  T  K  A  R  N  C  F  *  K  I  H  P  K  T  Y  E  R  D  *  Y  *  L  G  G  E  A  L  A  T  P  P  L  G  G  T  D  C  A  V  G  A  A  S  E  A  Y  A  C  G  W  E  *  A  P  *  A  L  L  *  G  G  G  C  C  P  *  L  G  G  A  P  *  D  W  A  P  *  P  G  *  A  G  G  A  P  Y  A  E  E  G  G  R  W  A  L  G  S  A  W  A  *  P  D  *  A  *  A  A  G  *  G  Y  P  G  C  A  G  A  G  W  A  *  P  A  C  A  L  G  D  C  C  G  *  P  *  L  A  *  V  G  G  F  *  A  *  G  A  P  *  L  A  A  *  P  P  A  G  C  V  P  Y  P  P  *  E  V  G  G  T  P  Y  P  A  *  A  E  P  *  D  G  *  L  G  L  G  L  G  C  W  P  E  *  Y  P  C  *  A  V  A  D  A  G  G  G  A  *  L  P  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14277" stop="13987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLSSWLRIPGLRWGRLGITSLCTRRLLWLTIACLSRRFLSLRSPITSSIASSWLCTIPTLRSWGHPISSLSRALRWVARIRAGLLARMISLLSCG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14511" stop="14278"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFGNPTTRWNRLRSWSCFRSICLWLGVSTIGAVVRRWLLSITRRSAIRLGTITWLSWWSTICRRGRSLGVGISLGIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32949" PGL_stop="32320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32949" e_stop="32320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="32949" e_stop="32320" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32949" stop="32320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTCTTCAATCTTCAAGTTTTTCTTCACGATTGTGCTGAATTTAGGTATAATTCCATAGTTTTCGCTTCTAGCAATGCCAAAAAAGAGTAATTCGAAGAAGCCTAAACCAGTGGAAGTAGCAGCAGCTGCTGTTGTAGAAAAGGAGAAACCAGTTTCTTCGTCTAAACCCAAAAAGCCCGGCAGTGAAATCGACGATATATTTGCCGGAAAAAAGAGGAAGAAACCGGAATTACAAGAAAAATCAAGCGGAGTTGCTGTTACAGAGCCGAAAAAGGCGAAGAAAAGCAAGGAAAATAGTGGTAGGATTCCGAAAGATAATGTGTTATCTGAGCCACCACGTCGGTCGAGGAAGAAAACGGCAGATGGGTTTACTTTATACACAGAAGAGGAGTTGGGTATTGGGAGGTCTAATGCTGGAGGTACTTCACTTTGCCCTTTTGATTGTGACTGTTGTTTTTAGTGAATTTTGAAAGAAATTGTTTGAGATTGAATGAATTATATCAGTTTTGTAATGAATTTGTAGTAGTATATGTCCGTTTCGAGGATGAAGTTTTGTTCTTTTTACTGACTGGTGTAAGCTGTAACAGTTTTATTTGAATGCATGAGGAATTTTGTTTATAGATGTGA</gDNA_template>
            <first_frame> L  L  F  N  L  Q  V  F  L  H  D  C  A  E  F  R  Y  N  S  I  V  F  A  S  S  N  A  K  K  E  *  F  E  E  A  *  T  S  G  S  S  S  S  C  C  C  R  K  G  E  T  S  F  F  V  *  T  Q  K  A  R  Q  *  N  R  R  Y  I  C  R  K  K  E  E  E  T  G  I  T  R  K  I  K  R  S  C  C  Y  R  A  E  K  G  E  E  K  Q  G  K  *  W  *  D  S  E  R  *  C  V  I  *  A  T  T  S  V  E  E  E  N  G  R  W  V  Y  F  I  H  R  R  G  V  G  Y  W  E  V  *  C  W  R  Y  F  T  L  P  F  *  L  *  L  L  F  L  V  N  F  E  R  N  C  L  R  L  N  E  L  Y  Q  F  C  N  E  F  V  V  V  Y  V  R  F  E  D  E  V  L  F  F  L  L  T  G  V  S  C  N  S  F  I  *  M  H  E  E  F  C  L  *  M  * </first_frame>
            <second_frame>  Y  S  S  I  F  K  F  F  F  T  I  V  L  N  L  G  I  I  P  *  F  S  L  L  A  M  P  K  K  S  N  S  K  K  P  K  P  V  E  V  A  A  A  A  V  V  E  K  E  K  P  V  S  S  S  K  P  K  K  P  G  S  E  I  D  D  I  F  A  G  K  K  R  K  K  P  E  L  Q  E  K  S  S  G  V  A  V  T  E  P  K  K  A  K  K  S  K  E  N  S  G  R  I  P  K  D  N  V  L  S  E  P  P  R  R  S  R  K  K  T  A  D  G  F  T  L  Y  T  E  E  E  L  G  I  G  R  S  N  A  G  G  T  S  L  C  P  F  D  C  D  C  C  F  *  *  I  L  K  E  I  V  *  D  *  M  N  Y  I  S  F  V  M  N  L  *  *  Y  M  S  V  S  R  M  K  F  C  S  F  Y  *  L  V  *  A  V  T  V  L  F  E  C  M  R  N  F  V  Y  R  C   </second_frame>
            <third_frame>   T  L  Q  S  S  S  F  S  S  R  L  C  *  I  *  V  *  F  H  S  F  R  F  *  Q  C  Q  K  R  V  I  R  R  S  L  N  Q  W  K  *  Q  Q  L  L  L  *  K  R  R  N  Q  F  L  R  L  N  P  K  S  P  A  V  K  S  T  I  Y  L  P  E  K  R  G  R  N  R  N  Y  K  K  N  Q  A  E  L  L  L  Q  S  R  K  R  R  R  K  A  R  K  I  V  V  G  F  R  K  I  M  C  Y  L  S  H  H  V  G  R  G  R  K  R  Q  M  G  L  L  Y  T  Q  K  R  S  W  V  L  G  G  L  M  L  E  V  L  H  F  A  L  L  I  V  T  V  V  F  S  E  F  *  K  K  L  F  E  I  E  *  I  I  S  V  L  *  *  I  C  S  S  I  C  P  F  R  G  *  S  F  V  L  F  T  D  W  C  K  L  *  Q  F  Y  L  N  A  *  G  I  L  F  I  D  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32888" stop="32487"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLLAMPKKSNSKKPKPVEVAAAAVVEKEKPVSSSKPKKPGSEIDDIFAGKKRKKPELQEKSSGVAVTEPKKAKKSKENSGRIPKDNVLSEPPRRSRKKTADGFTLYTEEELGIGRSNAGGTSLCPFDCDCCF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32809" stop="32477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRNQFLRLNPKSPAVKSTIYLPEKRGRNRNYKKNQAELLLQSRKRRRKARKIVVGFRKIMCYLSHHVGRGRKRQMGLLYTQKRSWVLGGLMLEVLHFALLIVTVVFSEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37843" PGL_stop="34135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37843" e_stop="37695"/>
            <exon e_start="36739" e_stop="36544"/>
            <exon e_start="36342" e_stop="36168"/>
            <exon e_start="36089" e_stop="35972"/>
            <exon e_start="35895" e_stop="35783"/>
            <exon e_start="35670" e_stop="35548"/>
            <exon e_start="35369" e_stop="35265"/>
            <exon e_start="35107" e_stop="35021"/>
            <exon e_start="34950" e_stop="34843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.131" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37843" e_stop="37695" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37694" i_stop="36740" i_length="955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36739" e_stop="36544" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.960">
            <gDNA_intron_boundary i_start="36543" i_stop="36343" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36342" e_stop="36168" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36167" i_stop="36090" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36089" e_stop="35972" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35971" i_stop="35896" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35895" e_stop="35783" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.930">
            <gDNA_intron_boundary i_start="35782" i_stop="35671" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35670" e_stop="35548" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.322">
            <gDNA_intron_boundary i_start="35547" i_stop="35370" i_length="178"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35369" e_stop="35265" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35264" i_stop="35108" i_length="157"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35107" e_stop="35021" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.131" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35020" i_stop="34951" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="34950" e_stop="34843" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37843" stop="37695"/>
              <exon start="36739" stop="36544"/>
              <exon start="36342" stop="36168"/>
              <exon start="36089" stop="35972"/>
              <exon start="35895" stop="35783"/>
              <exon start="35670" stop="35552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36080" stop="35972"/>
              <exon start="35895" stop="35783"/>
              <exon start="35670" stop="35548"/>
              <exon start="35369" stop="35265"/>
              <exon start="35107" stop="35021"/>
              <exon start="34950" stop="34843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGATCGGCTTTCCCTTTAAAGGGTGAAGTGAAACTTAATGGGGTCAGATTATGGTTTGTTAAGCCTTGCAAAGCCTCTCAACTTGATGGGAGCTTGGTTTCAGGAAGGCCTCCTTCTTCTGTTTCTGTTCCTATCCCAGAAATGGGAG : GTGCTGGGAACAACTTTGTAGATTATGGATTGGGTGAAGCTGATCCTGAAGTCCGTGGTATTATTGACAAAGAGAAGGAACGCCAATTTCGTAGCTTAGAGCTTATTGCCTCTGAGAATTTCACATCTCGAGCAGTGATGGAGGCGGTGGGTTCTTGCCTTACAAACAAATACTCCGAAGGACTACCAGGCAAAAG : ATATTATGGTGGAAACGAGTACATTGACGAGTTAGAAATACTCTGTCAAGAGAGGGCTTTGGCAGCCTTTAACTTAGATGGGAAACAGTGGGGTGTCAATGTTCAACCCCTATCTGGTTCTCCAGCAAATTTTGAAGTCTACACAGCAGTTCTCAATCCACATGACCGGATTATG : GGATTGGACTTGCCTCATGGGGGTCATTTGTCCCATGGATTCATGACTCCTAAAAGACGAGTTTCAGGCACATCTATTTACTTTGAGTCCATGCCTTACCGCCTTGATGAATCTTCAG : GACTTGTTGATTATGACATGCTTGAGAAAACTGCAACCCTTTTTCGGCCAAAACTTATTATTGCTGGTGCTAGTGCATATCCACGAGATTTTGATTATCCTCGCATGAGAAAG : ATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCACAAG : TCTCTAAGAGGTCCTAGAGGAGGAATGATCTTCTTCAAGAAAGATCCTGTCCTAGGCGTTGATTTGGAATCTGCCATCAACAATGCTGTTTTTCCTGGCTTGCAG : GGTGGTCCACACAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGATTTCAAGGCTTATCAGAACAAG : GTGGTCTCTAACTGTAGAGCTCTTGCAAGCCGGTTAACGGAGTTGGGGTACAAGCTGGTCTCTGGAGGAACTGACAATCATTTGGTCCTAGTTGATCTTAGGCCCTTG</gDNA_template>
            <first_frame> G  I  G  F  P  F  K  G  *  S  E  T  *  W  G  Q  I  M  V  C  *  A  L  Q  S  L  S  T  *  W  E  L  G  F  R  K  A  S  F  F  C  F  C  S  Y  P  R  N  G  R :   C  W  E  Q  L  C  R  L  W  I  G  *  S  *  S  *  S  P  W  Y  Y  *  Q  R  E  G  T  P  I  S  *  L  R  A  Y  C  L  *  E  F  H  I  S  S  S  D  G  G  G  G  F  L  P  Y  K  Q  I  L  R  R  T  T  R  Q  K  :  I  L  W  W  K  R  V  H  *  R  V  R  N  T  L  S  R  E  G  F  G  S  L  *  L  R  W  E  T  V  G  C  Q  C  S  T  P  I  W  F  S  S  K  F  *  S  L  H  S  S  S  Q  S  T  *  P  D  Y   : G  I  G  L  A  S  W  G  S  F  V  P  W  I  H  D  S  *  K  T  S  F  R  H  I  Y  L  L  *  V  H  A  L  P  P  *  *  I  F  R :   T  C  *  L  *  H  A  *  E  N  C  N  P  F  S  A  K  T  Y  Y  C  W  C  *  C  I  S  T  R  F  *  L  S  S  H  E  K   : D  S  R  C  C  W  S  L  S  H  D  G  Y  G  S  H  *  W  A  C  C  R  L  C  S  C  *  S  I  *  I  L  *  H  C  Y  H  N  N  S  Q   : V  S  K  R  S  *  R  R  N  D  L  L  Q  E  R  S  C  P  R  R  *  F  G  I  C  H  Q  Q  C  C  F  S  W  L  A   : G  W  S  T  Q  S  H  N  W  R  T  S  C  L  L  E  A  C  Q  I  T  *  F  Q  G  L  S  E  Q   : G  G  L  *  L  *  S  S  C  K  P  V  N  G  V  G  V  Q  A  G  L  W  R  N  *  Q  S  F  G  P  S  *  S  *  A  L  </first_frame>
            <second_frame>  G  S  A  F  P  L  K  G  E  V  K  L  N  G  V  R  L  W  F  V  K  P  C  K  A  S  Q  L  D  G  S  L  V  S  G  R  P  P  S  S  V  S  V  P  I  P  E  M  G   : G  A  G  N  N  F  V  D  Y  G  L  G  E  A  D  P  E  V  R  G  I  I  D  K  E  K  E  R  Q  F  R  S  L  E  L  I  A  S  E  N  F  T  S  R  A  V  M  E  A  V  G  S  C  L  T  N  K  Y  S  E  G  L  P  G  K  R :   Y  Y  G  G  N  E  Y  I  D  E  L  E  I  L  C  Q  E  R  A  L  A  A  F  N  L  D  G  K  Q  W  G  V  N  V  Q  P  L  S  G  S  P  A  N  F  E  V  Y  T  A  V  L  N  P  H  D  R  I  M  :  G  L  D  L  P  H  G  G  H  L  S  H  G  F  M  T  P  K  R  R  V  S  G  T  S  I  Y  F  E  S  M  P  Y  R  L  D  E  S  S   : G  L  V  D  Y  D  M  L  E  K  T  A  T  L  F  R  P  K  L  I  I  A  G  A  S  A  Y  P  R  D  F  D  Y  P  R  M  R  K  :  I  A  D  A  V  G  A  F  L  M  M  D  M  A  H  I  S  G  L  V  A  A  S  V  V  A  N  P  F  E  Y  C  D  I  V  T  T  T  T  H  K  :  S  L  R  G  P  R  G  G  M  I  F  F  K  K  D  P  V  L  G  V  D  L  E  S  A  I  N  N  A  V  F  P  G  L  Q  :  G  G  P  H  N  H  T  I  G  G  L  A  V  C  L  K  H  A  K  S  P  D  F  K  A  Y  Q  N  K  :  V  V  S  N  C  R  A  L  A  S  R  L  T  E  L  G  Y  K  L  V  S  G  G  T  D  N  H  L  V  L  V  D  L  R  P  L </second_frame>
            <third_frame>   D  R  L  S  L  *  R  V  K  *  N  L  M  G  S  D  Y  G  L  L  S  L  A  K  P  L  N  L  M  G  A  W  F  Q  E  G  L  L  L  L  F  L  F  L  S  Q  K  W  E  :  V  L  G  T  T  L  *  I  M  D  W  V  K  L  I  L  K  S  V  V  L  L  T  K  R  R  N  A  N  F  V  A  *  S  L  L  P  L  R  I  S  H  L  E  Q  *  W  R  R  W  V  L  A  L  Q  T  N  T  P  K  D  Y  Q  A  K   : D  I  M  V  E  T  S  T  L  T  S  *  K  Y  S  V  K  R  G  L  W  Q  P  L  T  *  M  G  N  S  G  V  S  M  F  N  P  Y  L  V  L  Q  Q  I  L  K  S  T  Q  Q  F  S  I  H  M  T  G  L  W :   D  W  T  C  L  M  G  V  I  C  P  M  D  S  *  L  L  K  D  E  F  Q  A  H  L  F  T  L  S  P  C  L  T  A  L  M  N  L  Q  :  D  L  L  I  M  T  C  L  R  K  L  Q  P  F  F  G  Q  N  L  L  L  L  V  L  V  H  I  H  E  I  L  I  I  L  A  *  E  R :   *  Q  M  L  L  E  P  F  S  *  W  I  W  L  T  L  V  G  L  L  P  P  L  *  L  L  I  H  L  N  T  V  T  L  L  P  Q  Q  L  T  S :   L  *  E  V  L  E  E  E  *  S  S  S  R  K  I  L  S  *  A  L  I  W  N  L  P  S  T  M  L  F  F  L  A  C  R :   V  V  H  T  I  T  Q  L  E  D  *  L  F  A  *  S  M  P  N  H  L  I  S  R  L  I  R  T  R :   W  S  L  T  V  E  L  L  Q  A  G  *  R  S  W  G  T  S  W  S  L  E  E  L  T  I  I  W  S  *  L  I  L  G  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37842" stop="37695"/>
                    <exon start="36739" stop="36544"/>
                    <exon start="36342" stop="36168"/>
                    <exon start="36089" stop="35972"/>
                    <exon start="35895" stop="35783"/>
                    <exon start="35670" stop="35548"/>
                    <exon start="35369" stop="35265"/>
                    <exon start="35107" stop="35021"/>
                    <exon start="34950" stop="34843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSAFPLKGEVKLNGVRLWFVKPCKASQLDGSLVSGRPPSSVSVPIPEMGGAGNNFVDYGLGEADPEVRGIIDKEKERQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELEILCQERALAAFNLDGKQWGVNVQPLSGSPANFEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESSGLVDYDMLEKTATLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVANPFEYCDIVTTTTHKSLRGPRGGMIFFKKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAKSPDFKAYQNKVVSNCRALASRLTELGYKLVSGGTDNHLVLVDLRPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35673" e_stop="35548"/>
            <exon e_start="35369" e_stop="35265"/>
            <exon e_start="35107" e_stop="35021"/>
            <exon e_start="34950" e_stop="34843"/>
            <exon e_start="34446" e_stop="34374"/>
            <exon e_start="34294" e_stop="34135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.322" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.131" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="35673" e_stop="35548" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.322">
            <gDNA_intron_boundary i_start="35547" i_stop="35370" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35369" e_stop="35265" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35264" i_stop="35108" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="35107" e_stop="35021" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.131" acc_prob="0.997">
            <gDNA_intron_boundary i_start="35020" i_stop="34951" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="34950" e_stop="34843" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="34842" i_stop="34447" i_length="396"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34446" e_stop="34374" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34373" i_stop="34295" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="34294" e_stop="34135" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35673" stop="35548"/>
              <exon start="35369" stop="35265"/>
              <exon start="35107" stop="35021"/>
              <exon start="34950" stop="34843"/>
              <exon start="34446" stop="34374"/>
              <exon start="34294" stop="34135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422972" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATAGCAGATGCTGTTGGAGCCTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCCGCCTCTGTAGTTGCTAATCCATTTGAATACTGTGACATTGTTACCACAACAACTCACAAG : TCTCTAAGAGGTCCTAGAGGAGGAATGATCTTCTTCAAGAAAGATCCTGTCCTAGGCGTTGATTTGGAATCTGCCATCAACAATGCTGTTTTTCCTGGCTTGCAG : GGTGGTCCACACAATCACACAATTGGAGGACTAGCTGTTTGCTTGAAGCATGCCAAATCACCTGATTTCAAGGCTTATCAGAACAAG : GTGGTCTCTAACTGTAGAGCTCTTGCAAGCCGGTTAACGGAGTTGGGGTACAAGCTGGTCTCTGGAGGAACTGACAATCATTTGGTCCTAGTTGATCTTAGGCCCTTG : GGTACTGATGGTGCTAGAGTGGAGAAAATACTTGACATGGCATCAATCACGCTCAATAAGAATTCAGTAGCCG : GTGATAAAAGTGCACTAGTGCCTGGTGGTATACGCATAGGCTCACCTGCAATGACAACTCGAGGTTTCTCAGAGAAGGAATTTGTAACCGTTGCAGACCTTATTAACGAGGGTGTGCAGATAACTCTTGAGGCCAAGAACTTAGTCTCTGGTTCTAAACT</gDNA_template>
            <first_frame> K  I  A  D  A  V  G  A  F  L  M  M  D  M  A  H  I  S  G  L  V  A  A  S  V  V  A  N  P  F  E  Y  C  D  I  V  T  T  T  T  H  K  :  S  L  R  G  P  R  G  G  M  I  F  F  K  K  D  P  V  L  G  V  D  L  E  S  A  I  N  N  A  V  F  P  G  L  Q  :  G  G  P  H  N  H  T  I  G  G  L  A  V  C  L  K  H  A  K  S  P  D  F  K  A  Y  Q  N  K  :  V  V  S  N  C  R  A  L  A  S  R  L  T  E  L  G  Y  K  L  V  S  G  G  T  D  N  H  L  V  L  V  D  L  R  P  L  :  G  T  D  G  A  R  V  E  K  I  L  D  M  A  S  I  T  L  N  K  N  S  V  A   : G  D  K  S  A  L  V  P  G  G  I  R  I  G  S  P  A  M  T  T  R  G  F  S  E  K  E  F  V  T  V  A  D  L  I  N  E  G  V  Q  I  T  L  E  A  K  N  L  V  S  G  S  K   </first_frame>
            <second_frame>  R  *  Q  M  L  L  E  P  F  S  *  W  I  W  L  T  L  V  G  L  L  P  P  L  *  L  L  I  H  L  N  T  V  T  L  L  P  Q  Q  L  T  S :   L  *  E  V  L  E  E  E  *  S  S  S  R  K  I  L  S  *  A  L  I  W  N  L  P  S  T  M  L  F  F  L  A  C  R :   V  V  H  T  I  T  Q  L  E  D  *  L  F  A  *  S  M  P  N  H  L  I  S  R  L  I  R  T  R :   W  S  L  T  V  E  L  L  Q  A  G  *  R  S  W  G  T  S  W  S  L  E  E  L  T  I  I  W  S  *  L  I  L  G  P  W :   V  L  M  V  L  E  W  R  K  Y  L  T  W  H  Q  S  R  S  I  R  I  Q  *  P  :  V  I  K  V  H  *  C  L  V  V  Y  A  *  A  H  L  Q  *  Q  L  E  V  S  Q  R  R  N  L  *  P  L  Q  T  L  L  T  R  V  C  R  *  L  L  R  P  R  T  *  S  L  V  L  N  </second_frame>
            <third_frame>   D  S  R  C  C  W  S  L  S  H  D  G  Y  G  S  H  *  W  A  C  C  R  L  C  S  C  *  S  I  *  I  L  *  H  C  Y  H  N  N  S  Q   : V  S  K  R  S  *  R  R  N  D  L  L  Q  E  R  S  C  P  R  R  *  F  G  I  C  H  Q  Q  C  C  F  S  W  L  A   : G  W  S  T  Q  S  H  N  W  R  T  S  C  L  L  E  A  C  Q  I  T  *  F  Q  G  L  S  E  Q   : G  G  L  *  L  *  S  S  C  K  P  V  N  G  V  G  V  Q  A  G  L  W  R  N  *  Q  S  F  G  P  S  *  S  *  A  L   : G  Y  *  W  C  *  S  G  E  N  T  *  H  G  I  N  H  A  Q  *  E  F  S  S  R :   *  *  K  C  T  S  A  W  W  Y  T  H  R  L  T  C  N  D  N  S  R  F  L  R  E  G  I  C  N  R  C  R  P  Y  *  R  G  C  A  D  N  S  *  G  Q  E  L  S  L  W  F  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35673" stop="35548"/>
                    <exon start="35369" stop="35265"/>
                    <exon start="35107" stop="35021"/>
                    <exon start="34950" stop="34843"/>
                    <exon start="34446" stop="34374"/>
                    <exon start="34294" stop="34137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIADAVGAFLMMDMAHISGLVAASVVANPFEYCDIVTTTTHKSLRGPRGGMIFFKKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAKSPDFKAYQNKVVSNCRALASRLTELGYKLVSGGTDNHLVLVDLRPLGTDGARVEKILDMASITLNKNSVAGDKSALVPGGIRIGSPAMTTRGFSEKEFVTVADLINEGVQITLEAKNLVSGSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39723" PGL_stop="43763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39723" e_stop="39828"/>
            <exon e_start="41079" e_stop="41237"/>
            <exon e_start="43404" e_stop="43763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.867" e_score="0.953"/>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="0.981"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="39723" e_stop="39828" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.867">
            <gDNA_intron_boundary i_start="39829" i_stop="41078" i_length="1250"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="41079" e_stop="41237" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41238" i_stop="43403" i_length="2166"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="43404" e_stop="43763" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39723" stop="39828"/>
              <exon start="41079" stop="41237"/>
              <exon start="43404" stop="43763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGACTCAATTAAGCAGGCAATCCTTCTATTCGTCAATGCAAAGCTCACTATTAATCCAGATCACCGTTTTGCTTTTGCTGCTCTTGGCAAATCTGCCTCTTGG : GTTTGTAAAGAGTTTACTAGTGACATTGACTCAGTAGTTTCTGCATGCCGGGGTATTGCAGTAGATTCACCTTGTGGCCATGCAGACCTTACTCAACTATTTCGAGTGGCAGCTCATGAAGCAAAAAAGACACGTGCACAAAATCGGATACTCAGGGTG : GTACTTCTATATTGTAGGTCATCTATACCACCACAGCATCAATGGCCTGCTACCCAAAAGCTCTTCACTTTGGATGTAGTTTACCTTCATGACAAACCTGGACCTGACAATTGCCCTCAAAAGGTTTATGATGCCCTTGTCGAAGCCCTGGAACATGTCAGTGAATACGAGGGTTACATATTTGAGAGTGGTCAGGGGCTTACTCGTGTCCTATTCCGTCATATGTGTACACTTCTTTCCCACCCTCAGCAACGTTGCGTGCAAGATGACCTTGACATTCCCAAGTCCCTTACAAAGAAGTCAGCTACCTCTGACTCGGCACCAACTGATGAAAATGCTGTTGTTGTCTCTAGCCAATGA</gDNA_template>
            <first_frame> V  G  L  N  *  A  G  N  P  S  I  R  Q  C  K  A  H  Y  *  S  R  S  P  F  C  F  C  C  S  W  Q  I  C  L  L   : G  L  *  R  V  Y  *  *  H  *  L  S  S  F  C  M  P  G  Y  C  S  R  F  T  L  W  P  C  R  P  Y  S  T  I  S  S  G  S  S  *  S  K  K  D  T  C  T  K  S  D  T  Q  G   : G  T  S  I  L  *  V  I  Y  T  T  T  A  S  M  A  C  Y  P  K  A  L  H  F  G  C  S  L  P  S  *  Q  T  W  T  *  Q  L  P  S  K  G  L  *  C  P  C  R  S  P  G  T  C  Q  *  I  R  G  L  H  I  *  E  W  S  G  A  Y  S  C  P  I  P  S  Y  V  Y  T  S  F  P  P  S  A  T  L  R  A  R  *  P  *  H  S  Q  V  P  Y  K  E  V  S  Y  L  *  L  G  T  N  *  *  K  C  C  C  C  L  *  P  M  </first_frame>
            <second_frame>  L  D  S  I  K  Q  A  I  L  L  F  V  N  A  K  L  T  I  N  P  D  H  R  F  A  F  A  A  L  G  K  S  A  S  W  :  V  C  K  E  F  T  S  D  I  D  S  V  V  S  A  C  R  G  I  A  V  D  S  P  C  G  H  A  D  L  T  Q  L  F  R  V  A  A  H  E  A  K  K  T  R  A  Q  N  R  I  L  R  V  :  V  L  L  Y  C  R  S  S  I  P  P  Q  H  Q  W  P  A  T  Q  K  L  F  T  L  D  V  V  Y  L  H  D  K  P  G  P  D  N  C  P  Q  K  V  Y  D  A  L  V  E  A  L  E  H  V  S  E  Y  E  G  Y  I  F  E  S  G  Q  G  L  T  R  V  L  F  R  H  M  C  T  L  L  S  H  P  Q  Q  R  C  V  Q  D  D  L  D  I  P  K  S  L  T  K  K  S  A  T  S  D  S  A  P  T  D  E  N  A  V  V  V  S  S  Q  * </second_frame>
            <third_frame>   W  T  Q  L  S  R  Q  S  F  Y  S  S  M  Q  S  S  L  L  I  Q  I  T  V  L  L  L  L  L  L  A  N  L  P  L  G :   F  V  K  S  L  L  V  T  L  T  Q  *  F  L  H  A  G  V  L  Q  *  I  H  L  V  A  M  Q  T  L  L  N  Y  F  E  W  Q  L  M  K  Q  K  R  H  V  H  K  I  G  Y  S  G  W :   Y  F  Y  I  V  G  H  L  Y  H  H  S  I  N  G  L  L  P  K  S  S  S  L  W  M  *  F  T  F  M  T  N  L  D  L  T  I  A  L  K  R  F  M  M  P  L  S  K  P  W  N  M  S  V  N  T  R  V  T  Y  L  R  V  V  R  G  L  L  V  S  Y  S  V  I  C  V  H  F  F  P  T  L  S  N  V  A  C  K  M  T  L  T  F  P  S  P  L  Q  R  S  Q  L  P  L  T  R  H  Q  L  M  K  M  L  L  L  S  L  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39724" stop="39828"/>
                    <exon start="41079" stop="41237"/>
                    <exon start="43404" stop="43763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDSIKQAILLFVNAKLTINPDHRFAFAALGKSASWVCKEFTSDIDSVVSACRGIAVDSPCGHADLTQLFRVAAHEAKKTRAQNRILRVVLLYCRSSIPPQHQWPATQKLFTLDVVYLHDKPGPDNCPQKVYDALVEALEHVSEYEGYIFESGQGLTRVLFRHMCTLLSHPQQRCVQDDLDIPKSLTKKSATSDSAPTDENAVVVSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="49619" PGL_stop="43891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49619" e_stop="49426"/>
            <exon e_start="48037" e_stop="47873"/>
            <exon e_start="47799" e_stop="47643"/>
            <exon e_start="46699" e_stop="46614"/>
            <exon e_start="46514" e_stop="46315"/>
            <exon e_start="45940" e_stop="45892"/>
            <exon e_start="45662" e_stop="45453"/>
            <exon e_start="45043" e_stop="44837"/>
            <exon e_start="44745" e_stop="44320"/>
            <exon e_start="43930" e_stop="43923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.266" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49619" e_stop="49426" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48037" e_stop="47873" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.266">
            <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47799" e_stop="47643" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46699" e_stop="46614" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46514" e_stop="46315" e_length="200"/>
          </exon>
          <intron i_serial="5" don_prob="0.808" acc_prob="0.937">
            <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45940" e_stop="45892" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45662" e_stop="45453" e_length="210"/>
          </exon>
          <intron i_serial="7" don_prob="0.953" acc_prob="0.962">
            <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45043" e_stop="44837" e_length="207"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44745" e_stop="44320" e_length="426"/>
          </exon>
          <intron i_serial="9" don_prob="0.855" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44319" i_stop="43931" i_length="389"/>
          </intron>
          <exon e_serial="10" e_score="0.750">
            <gDNA_exon_boundary e_start="43930" e_stop="43923" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49619" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49608" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49606" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49602" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49550" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47951" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47902" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47876" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46665" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46664" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46647" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46647" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46623" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46622" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46429" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46405" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46393" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368805" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46377" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46377" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45933" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45645" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577590" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45551" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45550" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45547" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45541" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573329" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45509" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261061" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45509" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45002" stop="44837"/>
              <exon start="44745" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44865" stop="44837"/>
              <exon start="44745" stop="44327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44738" stop="44320"/>
              <exon start="43930" stop="43923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44708" stop="44320"/>
              <exon start="43930" stop="43923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG : GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG : GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG : GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG : GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG : TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG : GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG : TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT : GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA : GAAAAAAG</gDNA_template>
            <first_frame> R  *  *  W  F  T  S  P  E  F  S  S  S  S  E  S  P  C  L  P  P  S  K  D  V  M  F  *  N  F  R  R  K  L  P  D  S  S  M  T  Q  M  T  L  L  E  P  D  G  P  S  F  S  P  D  Q  M  V  I  G  I  I  D  I  R :   L  M  Y  A  M  R  I  S  Y  *  E  K  V  V  S  K  M  K  I  L  L  S  S  C  M  M  T  L  L  T  M  K  R  T  Q  D  Q  E  L  L  L  I  V  L  P  V  R  M  F  T  K  E  F  L  R :   I  T  R  E  M  M  L  M  C  T  T  F  *  L  F  S  L  V  T  K  L  L  L  L  E  V  A  E  R  W  *  I  V  V  Q  M  I  I  F  S  Y  S  I  V  I  M  V  A  L  A  C  L  :  G  C  L  P  I  L  I  Y  M  P  M  I  *  L  L  C  *  K  R  S  M  P  L  G  H  I  K  A  W :   Y  C  T  L  K  L  A  S  L  E  V  Y  L  R  D  F  F  L  M  V  *  I  F  M  P  Q  Q  L  Q  M  L  K  K  A  A  G  E  P  I  V  L  E  N  I  L  V  L  L  L  N  M  R  L  A  W  V  I  C  M  L  F  P  G  W  R  T   : V  K  C  T  T  C  G  L  K  I  *  G  S  S  I  T  W :   S  K  R  E  L  Q  M  E  I  L  P  M  V  P  M  S  C  N  L  V  I  Y  N  *  V  W  S  L  Y  S  G  L  W  V  Q  I  L  Q  M  I  T  T  L  M  *  M  T  I  P  C  W  H  H  Q  R  L  S  T  S  V  M  Q  I  F  Y  I  S  G  T  S :   S  A  R  L  L  K  A  L  L  G  K  L  K  L  R  N  N  S  L  K  L  C  H  T  E  C  T  *  M  N  A  L  P  L  L  V  S  F  C  L  E  F  K  K  V  L  R  C  *  S  M  F  D  L  R  V  S  L  L  L  M  I  G  P  A  L  N  L  L :   *  E  H  L  S  R  T  A  D  R  Y  P  N  M  E  *  N  T  C  V  P  L  P  I  S  A  M  L  E  F  R  W  S  R  W  W  R  H  Q  H  K  L  V  L  A  S  L  P  I  F  G  V  P  S  T  G  A  L  V  R  K  T  P  W  T  V  R  F  L  T  L  M  L  V  I  I  I  I  A  V  I  S  V  I  S  C  P  I  C  K  L  Q  F  D  P  V  I  T  E  V  Y  Y  Y  *  L  S  G  F  T  *  C  L  *  I  G  A  L  *  I  Q  L  N  K  H  D  L  S  S  L  I  I  F  E  S  T  F  L  I  A  S  K  Q :   K  K  </first_frame>
            <second_frame>  D  N  N  G  S  R  R  R  S  F  H  P  R  R  N  R  R  A  C  R  R  R  R  T  *  C  F  E  T  S  V  G  S  F  Q  I  L  R  *  R  R  *  L  C  W  N  Q  M  G  R  P  S  R  R  I  K  W  L  L  E  L  *  T  S   : G  *  C  M  P  C  V  S  A  I  E  K  R  W  S  Q  R  *  K  Y  Y  C  L  H  V  *  *  H  C  S  P  *  R  E  P  K  T  R  S  Y  Y  *  *  S  C  R  *  G  C  L  R  R  S  S  *   : G  L  H  G  R  *  C  *  C  A  Q  L  F  S  C  S  P  W  *  Q  N  C  S  Y  W  R  *  R  K  G  G  E  *  W  S  K  *  S  Y  F  H  I  L  *  *  S  W  W  P  W  R  A  W :   D  A  Y  Q  S  L  S  I  C  R  *  S  N  C  C  V  E  K  E  A  C  R  W  D  I  *  K  L   : G  I  V  H  *  S  L  R  V  W  K  Y  I  *  G  T  S  S  *  W  S  K  Y  L  C  H  N  S  F  K  C  *  R  K  Q  L  G  N  L  L  S  W  R  I  S  *  S  S  S  *  I  *  D  L  L  G  *  F  V  C  C  F  L  D  G  G  Q  :  *  N  A  Q  L  A  D  *  K  F  E  A  A  V  S  L   : G  Q  K  E  N  C  K  W  K  Y  C  L  W  F  P  C  H  A  I  W  *  S  T  T  E  Y  G  V  S  I  Q  V  Y  G  Y  K  S  C  K  *  *  L  H  L  C  R  *  Q  F  L  V  G  I  I  K  G  C  Q  P  A  *  C  R  S  F  T  F  L  G  Q   : V  P  Q  G  S  *  R  L  C  S  E  S  *  S  S  E  T  I  H  *  S  Y  V  T  Q  N  A  P  R  *  T  H  C  P  C  W  *  A  S  V  W  N  S  K  R  S  *  G  A  E  A  C  S  I  C  G  S  A  S  C  *  *  L  G  L  P  *  I  F   : C  K  N  I  *  V  A  L  R  I  V  I  P  I  W  N  E  T  H  A  F  H  C  Q  Y  L  Q  C  W  N  S  D  G  A  D  G  G  G  I  S  T  S  L  S  *  H  P  F  Q  Y  L  E  F  P  P  Q  G  L  *  C  V  K  R  H  G  L  C  G  F  S  L  *  C  W  *  *  *  *  L  L  L  S  V  S  F  H  V  L  F  V  N  C  N  L  I  L  L  L  L  K  S  T  I  I  D  Y  Q  D  S  R  N  V  C  K  L  V  L  C  K  Y  S  *  T  S  T  T  Y  H  L  *  L  Y  L  K  A  H  F  S  L  Q  V  N   : R  K  K </second_frame>
            <third_frame>   I  I  M  V  H  V  A  G  V  F  I  L  V  G  I  A  V  L  A  A  V  E  G  R  N  V  L  K  L  P  S  E  A  S  R  F  F  D  D  A  D  D  S  V  G  T  R  W  A  V  L  L  A  G  S  N  G  Y  W  N  Y  R  H  Q  :  A  D  V  C  H  A  Y  Q  L  L  R  K  G  G  L  K  D  E  N  I  I  V  F  M  Y  D  D  I  A  H  H  E  E  N  P  R  P  G  V  I  I  N  S  P  A  G  E  D  V  Y  E  G  V  P  K  :  D  Y  T  G  D  D  V  N  V  H  N  F  L  A  V  L  L  G  N  K  T  A  L  T  G  G  S  G  K  V  V  N  S  G  P  N  D  H  I  F  I  F  Y  S  D  H  G  G  P  G  V  L   : G  M  P  T  N  P  Y  L  Y  A  D  D  L  I  A  V  L  K  K  K  H  A  A  G  T  Y  K  S  L  :  V  L  Y  I  E  A  C  E  S  G  S  I  F  E  G  L  L  P  N  G  L  N  I  Y  A  T  T  A  S  N  A  E  E  S  S  W  G  T  Y  C  P  G  E  Y  P  S  P  P  P  E  Y  E  T  C  L  G  D  L  Y  A  V  S  W  M  E  D  S :   E  M  H  N  L  R  T  E  N  L  R  Q  Q  Y  H  L  :  V  K  K  R  T  A  N  G  N  T  A  Y  G  S  H  V  M  Q  F  G  D  L  Q  L  S  M  E  S  L  F  R  F  M  G  T  N  P  A  N  D  N  Y  T  Y  V  D  D  N  S  L  L  A  S  S  K  A  V  N  Q  R  D  A  D  L  L  H  F  W  D  K  :  F  R  K  A  P  E  G  S  A  R  K  V  E  A  Q  K  Q  F  T  E  A  M  S  H  R  M  H  L  D  E  R  I  A  L  V  G  K  L  L  F  G  I  Q  K  G  P  E  V  L  K  H  V  R  S  A  G  Q  P  L  V  D  D  W  A  C  L  K  S  F  :  V  R  T  F  E  S  H  C  G  S  L  S  Q  Y  G  M  K  H  M  R  S  I  A  N  I  C  N  A  G  I  Q  M  E  Q  M  V  E  A  S  A  Q  A  C  P  S  I  P  S  N  I  W  S  S  L  H  R  G  F  S  A  *  N  A  M  D  C  A  V  S  H  F  D  A  G  N  N  N  N  C  C  Y  Q  C  H  F  M  S  Y  L  *  I  A  I  *  S  C  Y  Y  *  S  L  L  L  L  I  I  R  I  H  V  M  F  V  N  W  C  S  V  N  T  A  E  Q  A  R  L  I  I  F  D  Y  I  *  K  H  I  S  H  C  K  *  T  :  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49617" stop="49426"/>
                    <exon start="48037" stop="47873"/>
                    <exon start="47799" stop="47643"/>
                    <exon start="46699" stop="46614"/>
                    <exon start="46514" stop="46315"/>
                    <exon start="45940" stop="45892"/>
                    <exon start="45662" stop="45453"/>
                    <exon start="45043" stop="44837"/>
                    <exon start="44745" stop="44563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMVHVAGVFILVGIAVLAAVEGRNVLKLPSEASRFFDDADDSVGTRWAVLLAGSNGYWNYRHQADVCHAYQLLRKGGLKDENIIVFMYDDIAHHEENPRPGVIINSPAGEDVYEGVPKDYTGDDVNVHNFLAVLLGNKTALTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGMPTNPYLYADDLIAVLKKKHAAGTYKSLVLYIEACESGSIFEGLLPNGLNIYATTASNAEESSWGTYCPGEYPSPPPEYETCLGDLYAVSWMEDSEMHNLRTENLRQQYHLVKKRTANGNTAYGSHVMQFGDLQLSMESLFRFMGTNPANDNYTYVDDNSLLASSKAVNQRDADLLHFWDKFRKAPEGSARKVEAQKQFTEAMSHRMHLDERIALVGKLLFGIQKGPEVLKHVRSAGQPLVDDWACLKSFVRTFESHCGSLSQYGMKHMRSIANICNAGIQMEQMVEASAQACPSIPSNIWSSLHRGFSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49619" e_stop="49426"/>
            <exon e_start="48037" e_stop="47873"/>
            <exon e_start="47799" e_stop="47643"/>
            <exon e_start="46699" e_stop="46614"/>
            <exon e_start="46514" e_stop="46315"/>
            <exon e_start="45940" e_stop="45892"/>
            <exon e_start="45662" e_stop="45453"/>
            <exon e_start="45043" e_stop="44837"/>
            <exon e_start="44745" e_stop="44353"/>
            <exon e_start="43930" e_stop="43891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.266" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.997"/>
          <exon-only e_score="0.475"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49619" e_stop="49426" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48037" e_stop="47873" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.266">
            <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47799" e_stop="47643" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46699" e_stop="46614" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46514" e_stop="46315" e_length="200"/>
          </exon>
          <intron i_serial="5" don_prob="0.808" acc_prob="0.937">
            <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45940" e_stop="45892" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45662" e_stop="45453" e_length="210"/>
          </exon>
          <intron i_serial="7" don_prob="0.953" acc_prob="0.962">
            <gDNA_intron_boundary i_start="45452" i_stop="45044" i_length="409"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45043" e_stop="44837" e_length="207"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="44745" e_stop="44353" e_length="393"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44352" i_stop="43931" i_length="422"/>
          </intron>
          <exon e_serial="10" e_score="0.475">
            <gDNA_exon_boundary e_start="43930" e_stop="43891" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49619" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49608" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49606" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49602" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49550" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47951" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47902" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47876" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46665" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46664" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46647" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46647" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46623" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46622" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46478" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46429" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46405" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46393" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368805" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46377" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46377" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45933" stop="45892"/>
              <exon start="45662" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45551" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45550" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45547" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45521" stop="45453"/>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44353"/>
              <exon start="43930" stop="43891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316934" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG : GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG : GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG : GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG : GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG : TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG : GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAG : TTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT : GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTAT : GAAAAAAGACGGAGGTGGAAAGAAAGAGGGGAAGGGTGGG</gDNA_template>
            <first_frame> R  *  *  W  F  T  S  P  E  F  S  S  S  S  E  S  P  C  L  P  P  S  K  D  V  M  F  *  N  F  R  R  K  L  P  D  S  S  M  T  Q  M  T  L  L  E  P  D  G  P  S  F  S  P  D  Q  M  V  I  G  I  I  D  I  R :   L  M  Y  A  M  R  I  S  Y  *  E  K  V  V  S  K  M  K  I  L  L  S  S  C  M  M  T  L  L  T  M  K  R  T  Q  D  Q  E  L  L  L  I  V  L  P  V  R  M  F  T  K  E  F  L  R :   I  T  R  E  M  M  L  M  C  T  T  F  *  L  F  S  L  V  T  K  L  L  L  L  E  V  A  E  R  W  *  I  V  V  Q  M  I  I  F  S  Y  S  I  V  I  M  V  A  L  A  C  L  :  G  C  L  P  I  L  I  Y  M  P  M  I  *  L  L  C  *  K  R  S  M  P  L  G  H  I  K  A  W :   Y  C  T  L  K  L  A  S  L  E  V  Y  L  R  D  F  F  L  M  V  *  I  F  M  P  Q  Q  L  Q  M  L  K  K  A  A  G  E  P  I  V  L  E  N  I  L  V  L  L  L  N  M  R  L  A  W  V  I  C  M  L  F  P  G  W  R  T   : V  K  C  T  T  C  G  L  K  I  *  G  S  S  I  T  W :   S  K  R  E  L  Q  M  E  I  L  P  M  V  P  M  S  C  N  L  V  I  Y  N  *  V  W  S  L  Y  S  G  L  W  V  Q  I  L  Q  M  I  T  T  L  M  *  M  T  I  P  C  W  H  H  Q  R  L  S  T  S  V  M  Q  I  F  Y  I  S  G  T  S :   S  A  R  L  L  K  A  L  L  G  K  L  K  L  R  N  N  S  L  K  L  C  H  T  E  C  T  *  M  N  A  L  P  L  L  V  S  F  C  L  E  F  K  K  V  L  R  C  *  S  M  F  D  L  R  V  S  L  L  L  M  I  G  P  A  L  N  L  L :   *  E  H  L  S  R  T  A  D  R  Y  P  N  M  E  *  N  T  C  V  P  L  P  I  S  A  M  L  E  F  R  W  S  R  W  W  R  H  Q  H  K  L  V  L  A  S  L  P  I  F  G  V  P  S  T  G  A  L  V  R  K  T  P  W  T  V  R  F  L  T  L  M  L  V  I  I  I  I  A  V  I  S  V  I  S  C  P  I  C  K  L  Q  F  D  P  V  I  T  E  V  Y  Y  Y  *  L  S  G  F  T  *  C  L  *  I  G  A  L  *  I  Q  L  N  K  H  D  L  S  S  L  I  M :   K  K  D  G  G  G  K  K  E  G  K  G  G </first_frame>
            <second_frame>  D  N  N  G  S  R  R  R  S  F  H  P  R  R  N  R  R  A  C  R  R  R  R  T  *  C  F  E  T  S  V  G  S  F  Q  I  L  R  *  R  R  *  L  C  W  N  Q  M  G  R  P  S  R  R  I  K  W  L  L  E  L  *  T  S   : G  *  C  M  P  C  V  S  A  I  E  K  R  W  S  Q  R  *  K  Y  Y  C  L  H  V  *  *  H  C  S  P  *  R  E  P  K  T  R  S  Y  Y  *  *  S  C  R  *  G  C  L  R  R  S  S  *   : G  L  H  G  R  *  C  *  C  A  Q  L  F  S  C  S  P  W  *  Q  N  C  S  Y  W  R  *  R  K  G  G  E  *  W  S  K  *  S  Y  F  H  I  L  *  *  S  W  W  P  W  R  A  W :   D  A  Y  Q  S  L  S  I  C  R  *  S  N  C  C  V  E  K  E  A  C  R  W  D  I  *  K  L   : G  I  V  H  *  S  L  R  V  W  K  Y  I  *  G  T  S  S  *  W  S  K  Y  L  C  H  N  S  F  K  C  *  R  K  Q  L  G  N  L  L  S  W  R  I  S  *  S  S  S  *  I  *  D  L  L  G  *  F  V  C  C  F  L  D  G  G  Q  :  *  N  A  Q  L  A  D  *  K  F  E  A  A  V  S  L   : G  Q  K  E  N  C  K  W  K  Y  C  L  W  F  P  C  H  A  I  W  *  S  T  T  E  Y  G  V  S  I  Q  V  Y  G  Y  K  S  C  K  *  *  L  H  L  C  R  *  Q  F  L  V  G  I  I  K  G  C  Q  P  A  *  C  R  S  F  T  F  L  G  Q   : V  P  Q  G  S  *  R  L  C  S  E  S  *  S  S  E  T  I  H  *  S  Y  V  T  Q  N  A  P  R  *  T  H  C  P  C  W  *  A  S  V  W  N  S  K  R  S  *  G  A  E  A  C  S  I  C  G  S  A  S  C  *  *  L  G  L  P  *  I  F   : C  K  N  I  *  V  A  L  R  I  V  I  P  I  W  N  E  T  H  A  F  H  C  Q  Y  L  Q  C  W  N  S  D  G  A  D  G  G  G  I  S  T  S  L  S  *  H  P  F  Q  Y  L  E  F  P  P  Q  G  L  *  C  V  K  R  H  G  L  C  G  F  S  L  *  C  W  *  *  *  *  L  L  L  S  V  S  F  H  V  L  F  V  N  C  N  L  I  L  L  L  L  K  S  T  I  I  D  Y  Q  D  S  R  N  V  C  K  L  V  L  C  K  Y  S  *  T  S  T  T  Y  H  L  *  L   : *  K  K  T  E  V  E  R  K  R  G  R  V   </second_frame>
            <third_frame>   I  I  M  V  H  V  A  G  V  F  I  L  V  G  I  A  V  L  A  A  V  E  G  R  N  V  L  K  L  P  S  E  A  S  R  F  F  D  D  A  D  D  S  V  G  T  R  W  A  V  L  L  A  G  S  N  G  Y  W  N  Y  R  H  Q  :  A  D  V  C  H  A  Y  Q  L  L  R  K  G  G  L  K  D  E  N  I  I  V  F  M  Y  D  D  I  A  H  H  E  E  N  P  R  P  G  V  I  I  N  S  P  A  G  E  D  V  Y  E  G  V  P  K  :  D  Y  T  G  D  D  V  N  V  H  N  F  L  A  V  L  L  G  N  K  T  A  L  T  G  G  S  G  K  V  V  N  S  G  P  N  D  H  I  F  I  F  Y  S  D  H  G  G  P  G  V  L   : G  M  P  T  N  P  Y  L  Y  A  D  D  L  I  A  V  L  K  K  K  H  A  A  G  T  Y  K  S  L  :  V  L  Y  I  E  A  C  E  S  G  S  I  F  E  G  L  L  P  N  G  L  N  I  Y  A  T  T  A  S  N  A  E  E  S  S  W  G  T  Y  C  P  G  E  Y  P  S  P  P  P  E  Y  E  T  C  L  G  D  L  Y  A  V  S  W  M  E  D  S :   E  M  H  N  L  R  T  E  N  L  R  Q  Q  Y  H  L  :  V  K  K  R  T  A  N  G  N  T  A  Y  G  S  H  V  M  Q  F  G  D  L  Q  L  S  M  E  S  L  F  R  F  M  G  T  N  P  A  N  D  N  Y  T  Y  V  D  D  N  S  L  L  A  S  S  K  A  V  N  Q  R  D  A  D  L  L  H  F  W  D  K  :  F  R  K  A  P  E  G  S  A  R  K  V  E  A  Q  K  Q  F  T  E  A  M  S  H  R  M  H  L  D  E  R  I  A  L  V  G  K  L  L  F  G  I  Q  K  G  P  E  V  L  K  H  V  R  S  A  G  Q  P  L  V  D  D  W  A  C  L  K  S  F  :  V  R  T  F  E  S  H  C  G  S  L  S  Q  Y  G  M  K  H  M  R  S  I  A  N  I  C  N  A  G  I  Q  M  E  Q  M  V  E  A  S  A  Q  A  C  P  S  I  P  S  N  I  W  S  S  L  H  R  G  F  S  A  *  N  A  M  D  C  A  V  S  H  F  D  A  G  N  N  N  N  C  C  Y  Q  C  H  F  M  S  Y  L  *  I  A  I  *  S  C  Y  Y  *  S  L  L  L  L  I  I  R  I  H  V  M  F  V  N  W  C  S  V  N  T  A  E  Q  A  R  L  I  I  F  D  Y  :  E  K  R  R  R  W  K  E  R  G  E  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49617" stop="49426"/>
                    <exon start="48037" stop="47873"/>
                    <exon start="47799" stop="47643"/>
                    <exon start="46699" stop="46614"/>
                    <exon start="46514" stop="46315"/>
                    <exon start="45940" stop="45892"/>
                    <exon start="45662" stop="45453"/>
                    <exon start="45043" stop="44837"/>
                    <exon start="44745" stop="44563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMVHVAGVFILVGIAVLAAVEGRNVLKLPSEASRFFDDADDSVGTRWAVLLAGSNGYWNYRHQADVCHAYQLLRKGGLKDENIIVFMYDDIAHHEENPRPGVIINSPAGEDVYEGVPKDYTGDDVNVHNFLAVLLGNKTALTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGMPTNPYLYADDLIAVLKKKHAAGTYKSLVLYIEACESGSIFEGLLPNGLNIYATTASNAEESSWGTYCPGEYPSPPPEYETCLGDLYAVSWMEDSEMHNLRTENLRQQYHLVKKRTANGNTAYGSHVMQFGDLQLSMESLFRFMGTNPANDNYTYVDDNSLLASSKAVNQRDADLLHFWDKFRKAPEGSARKVEAQKQFTEAMSHRMHLDERIALVGKLLFGIQKGPEVLKHVRSAGQPLVDDWACLKSFVRTFESHCGSLSQYGMKHMRSIANICNAGIQMEQMVEASAQACPSIPSNIWSSLHRGFSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="49619" e_stop="49426"/>
            <exon e_start="48037" e_stop="47873"/>
            <exon e_start="47799" e_stop="47643"/>
            <exon e_start="46699" e_stop="46614"/>
            <exon e_start="46514" e_stop="46315"/>
            <exon e_start="45940" e_stop="45892"/>
            <exon e_start="45662" e_stop="44837"/>
            <exon e_start="44745" e_stop="44320"/>
            <exon e_start="43930" e_stop="43923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.266" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="0.999"/>
          <exon-intron don_prob="0.855" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49619" e_stop="49426" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48037" e_stop="47873" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.266">
            <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47799" e_stop="47643" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46699" e_stop="46614" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46514" e_stop="46315" e_length="200"/>
          </exon>
          <intron i_serial="5" don_prob="0.808" acc_prob="0.937">
            <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45940" e_stop="45892" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="45662" e_stop="44837" e_length="826"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44745" e_stop="44320" e_length="426"/>
          </exon>
          <intron i_serial="8" don_prob="0.855" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44319" i_stop="43931" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="0.750">
            <gDNA_exon_boundary e_start="43930" e_stop="43923" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49619" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49608" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49606" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49602" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49550" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47951" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47902" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45640" stop="44850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45639" stop="45001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45316" stop="44837"/>
              <exon start="44745" stop="44688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45046" stop="44837"/>
              <exon start="44745" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368806" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45043" stop="44837"/>
              <exon start="44745" stop="44408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45002" stop="44837"/>
              <exon start="44745" stop="44320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44865" stop="44837"/>
              <exon start="44745" stop="44327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44738" stop="44320"/>
              <exon start="43930" stop="43923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44708" stop="44320"/>
              <exon start="43930" stop="43923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG : GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG : GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG : GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG : GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG : TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG : GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCTGGGACAAGGTATGCCCCAACAAACGCCCCCTTTCCTGAGTTTGCGCTAAACATAAGAAGCAAAAATATCAAATACTACATAACAAATCAGCAGGAAATAAAGCTGTTGAATCTTAAAGAACATATTAGTTAACAGTATGTCCTCTTTAAACAATATCTTTGCACCATCTTGCCACCATTGATGGTTTCATAACCATATTAATGTGGTATAGCTGGTTTCCAAAAAGACACTAACATTACATTTATGAATGGTAGCAATGCTAAACAGGCGGGTAACTTGTGCTAAGCTGCAAGAGTTATTTTTAGTAAGCCACATGTTGTAATTCGTGGGTCTTTATGTGTTTATGTATTAATTGGCTTGTGCCTCTGATGTGAAATGCCTTCTTATTGATTTTCTATTCTTCCTCAATGCTGGCAGTTCCGCAAGGCTCCTGAAGGCTCTGCTCGGAAAGTTGAAGCTCAGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTAGATGAACGCATTGCCCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT : GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA : GAAAAAAG</gDNA_template>
            <first_frame> R  *  *  W  F  T  S  P  E  F  S  S  S  S  E  S  P  C  L  P  P  S  K  D  V  M  F  *  N  F  R  R  K  L  P  D  S  S  M  T  Q  M  T  L  L  E  P  D  G  P  S  F  S  P  D  Q  M  V  I  G  I  I  D  I  R :   L  M  Y  A  M  R  I  S  Y  *  E  K  V  V  S  K  M  K  I  L  L  S  S  C  M  M  T  L  L  T  M  K  R  T  Q  D  Q  E  L  L  L  I  V  L  P  V  R  M  F  T  K  E  F  L  R :   I  T  R  E  M  M  L  M  C  T  T  F  *  L  F  S  L  V  T  K  L  L  L  L  E  V  A  E  R  W  *  I  V  V  Q  M  I  I  F  S  Y  S  I  V  I  M  V  A  L  A  C  L  :  G  C  L  P  I  L  I  Y  M  P  M  I  *  L  L  C  *  K  R  S  M  P  L  G  H  I  K  A  W :   Y  C  T  L  K  L  A  S  L  E  V  Y  L  R  D  F  F  L  M  V  *  I  F  M  P  Q  Q  L  Q  M  L  K  K  A  A  G  E  P  I  V  L  E  N  I  L  V  L  L  L  N  M  R  L  A  W  V  I  C  M  L  F  P  G  W  R  T   : V  K  C  T  T  C  G  L  K  I  *  G  S  S  I  T  W :   S  K  R  E  L  Q  M  E  I  L  P  M  V  P  M  S  C  N  L  V  I  Y  N  *  V  W  S  L  Y  S  G  L  W  V  Q  I  L  Q  M  I  T  T  L  M  *  M  T  I  P  C  W  H  H  Q  R  L  S  T  S  V  M  Q  I  F  Y  I  S  G  T  R  Y  A  P  T  N  A  P  F  P  E  F  A  L  N  I  R  S  K  N  I  K  Y  Y  I  T  N  Q  Q  E  I  K  L  L  N  L  K  E  H  I  S  *  Q  Y  V  L  F  K  Q  Y  L  C  T  I  L  P  P  L  M  V  S  *  P  Y  *  C  G  I  A  G  F  Q  K  D  T  N  I  T  F  M  N  G  S  N  A  K  Q  A  G  N  L  C  *  A  A  R  V  I  F  S  K  P  H  V  V  I  R  G  S  L  C  V  Y  V  L  I  G  L  C  L  *  C  E  M  P  S  Y  *  F  S  I  L  P  Q  C  W  Q  F  R  K  A  P  E  G  S  A  R  K  V  E  A  Q  K  Q  F  T  E  A  M  S  H  R  M  H  L  D  E  R  I  A  L  V  G  K  L  L  F  G  I  Q  K  G  P  E  V  L  K  H  V  R  S  A  G  Q  P  L  V  D  D  W  A  C  L  K  S  F  :  V  R  T  F  E  S  H  C  G  S  L  S  Q  Y  G  M  K  H  M  R  S  I  A  N  I  C  N  A  G  I  Q  M  E  Q  M  V  E  A  S  A  Q  A  C  P  S  I  P  S  N  I  W  S  S  L  H  R  G  F  S  A  *  N  A  M  D  C  A  V  S  H  F  D  A  G  N  N  N  N  C  C  Y  Q  C  H  F  M  S  Y  L  *  I  A  I  *  S  C  Y  Y  *  S  L  L  L  L  I  I  R  I  H  V  M  F  V  N  W  C  S  V  N  T  A  E  Q  A  R  L  I  I  F  D  Y  I  *  K  H  I  S  H  C  K  *  T  :  E  K   </first_frame>
            <second_frame>  D  N  N  G  S  R  R  R  S  F  H  P  R  R  N  R  R  A  C  R  R  R  R  T  *  C  F  E  T  S  V  G  S  F  Q  I  L  R  *  R  R  *  L  C  W  N  Q  M  G  R  P  S  R  R  I  K  W  L  L  E  L  *  T  S   : G  *  C  M  P  C  V  S  A  I  E  K  R  W  S  Q  R  *  K  Y  Y  C  L  H  V  *  *  H  C  S  P  *  R  E  P  K  T  R  S  Y  Y  *  *  S  C  R  *  G  C  L  R  R  S  S  *   : G  L  H  G  R  *  C  *  C  A  Q  L  F  S  C  S  P  W  *  Q  N  C  S  Y  W  R  *  R  K  G  G  E  *  W  S  K  *  S  Y  F  H  I  L  *  *  S  W  W  P  W  R  A  W :   D  A  Y  Q  S  L  S  I  C  R  *  S  N  C  C  V  E  K  E  A  C  R  W  D  I  *  K  L   : G  I  V  H  *  S  L  R  V  W  K  Y  I  *  G  T  S  S  *  W  S  K  Y  L  C  H  N  S  F  K  C  *  R  K  Q  L  G  N  L  L  S  W  R  I  S  *  S  S  S  *  I  *  D  L  L  G  *  F  V  C  C  F  L  D  G  G  Q  :  *  N  A  Q  L  A  D  *  K  F  E  A  A  V  S  L   : G  Q  K  E  N  C  K  W  K  Y  C  L  W  F  P  C  H  A  I  W  *  S  T  T  E  Y  G  V  S  I  Q  V  Y  G  Y  K  S  C  K  *  *  L  H  L  C  R  *  Q  F  L  V  G  I  I  K  G  C  Q  P  A  *  C  R  S  F  T  F  L  G  Q  G  M  P  Q  Q  T  P  P  F  L  S  L  R  *  T  *  E  A  K  I  S  N  T  T  *  Q  I  S  R  K  *  S  C  *  I  L  K  N  I  L  V  N  S  M  S  S  L  N  N  I  F  A  P  S  C  H  H  *  W  F  H  N  H  I  N  V  V  *  L  V  S  K  K  T  L  T  L  H  L  *  M  V  A  M  L  N  R  R  V  T  C  A  K  L  Q  E  L  F  L  V  S  H  M  L  *  F  V  G  L  Y  V  F  M  Y  *  L  A  C  A  S  D  V  K  C  L  L  I  D  F  L  F  F  L  N  A  G  S  S  A  R  L  L  K  A  L  L  G  K  L  K  L  R  N  N  S  L  K  L  C  H  T  E  C  T  *  M  N  A  L  P  L  L  V  S  F  C  L  E  F  K  K  V  L  R  C  *  S  M  F  D  L  R  V  S  L  L  L  M  I  G  P  A  L  N  L  L :   *  E  H  L  S  R  T  A  D  R  Y  P  N  M  E  *  N  T  C  V  P  L  P  I  S  A  M  L  E  F  R  W  S  R  W  W  R  H  Q  H  K  L  V  L  A  S  L  P  I  F  G  V  P  S  T  G  A  L  V  R  K  T  P  W  T  V  R  F  L  T  L  M  L  V  I  I  I  I  A  V  I  S  V  I  S  C  P  I  C  K  L  Q  F  D  P  V  I  T  E  V  Y  Y  Y  *  L  S  G  F  T  *  C  L  *  I  G  A  L  *  I  Q  L  N  K  H  D  L  S  S  L  I  I  F  E  S  T  F  L  I  A  S  K  Q :   K  K  </second_frame>
            <third_frame>   I  I  M  V  H  V  A  G  V  F  I  L  V  G  I  A  V  L  A  A  V  E  G  R  N  V  L  K  L  P  S  E  A  S  R  F  F  D  D  A  D  D  S  V  G  T  R  W  A  V  L  L  A  G  S  N  G  Y  W  N  Y  R  H  Q  :  A  D  V  C  H  A  Y  Q  L  L  R  K  G  G  L  K  D  E  N  I  I  V  F  M  Y  D  D  I  A  H  H  E  E  N  P  R  P  G  V  I  I  N  S  P  A  G  E  D  V  Y  E  G  V  P  K  :  D  Y  T  G  D  D  V  N  V  H  N  F  L  A  V  L  L  G  N  K  T  A  L  T  G  G  S  G  K  V  V  N  S  G  P  N  D  H  I  F  I  F  Y  S  D  H  G  G  P  G  V  L   : G  M  P  T  N  P  Y  L  Y  A  D  D  L  I  A  V  L  K  K  K  H  A  A  G  T  Y  K  S  L  :  V  L  Y  I  E  A  C  E  S  G  S  I  F  E  G  L  L  P  N  G  L  N  I  Y  A  T  T  A  S  N  A  E  E  S  S  W  G  T  Y  C  P  G  E  Y  P  S  P  P  P  E  Y  E  T  C  L  G  D  L  Y  A  V  S  W  M  E  D  S :   E  M  H  N  L  R  T  E  N  L  R  Q  Q  Y  H  L  :  V  K  K  R  T  A  N  G  N  T  A  Y  G  S  H  V  M  Q  F  G  D  L  Q  L  S  M  E  S  L  F  R  F  M  G  T  N  P  A  N  D  N  Y  T  Y  V  D  D  N  S  L  L  A  S  S  K  A  V  N  Q  R  D  A  D  L  L  H  F  W  D  K  V  C  P  N  K  R  P  L  S  *  V  C  A  K  H  K  K  Q  K  Y  Q  I  L  H  N  K  S  A  G  N  K  A  V  E  S  *  R  T  Y  *  L  T  V  C  P  L  *  T  I  S  L  H  H  L  A  T  I  D  G  F  I  T  I  L  M  W  Y  S  W  F  P  K  R  H  *  H  Y  I  Y  E  W  *  Q  C  *  T  G  G  *  L  V  L  S  C  K  S  Y  F  *  *  A  T  C  C  N  S  W  V  F  M  C  L  C  I  N  W  L  V  P  L  M  *  N  A  F  L  L  I  F  Y  S  S  S  M  L  A  V  P  Q  G  S  *  R  L  C  S  E  S  *  S  S  E  T  I  H  *  S  Y  V  T  Q  N  A  P  R  *  T  H  C  P  C  W  *  A  S  V  W  N  S  K  R  S  *  G  A  E  A  C  S  I  C  G  S  A  S  C  *  *  L  G  L  P  *  I  F   : C  K  N  I  *  V  A  L  R  I  V  I  P  I  W  N  E  T  H  A  F  H  C  Q  Y  L  Q  C  W  N  S  D  G  A  D  G  G  G  I  S  T  S  L  S  *  H  P  F  Q  Y  L  E  F  P  P  Q  G  L  *  C  V  K  R  H  G  L  C  G  F  S  L  *  C  W  *  *  *  *  L  L  L  S  V  S  F  H  V  L  F  V  N  C  N  L  I  L  L  L  L  K  S  T  I  I  D  Y  Q  D  S  R  N  V  C  K  L  V  L  C  K  Y  S  *  T  S  T  T  Y  H  L  *  L  Y  L  K  A  H  F  S  L  Q  V  N   : R  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49617" stop="49426"/>
                    <exon start="48037" stop="47873"/>
                    <exon start="47799" stop="47643"/>
                    <exon start="46699" stop="46614"/>
                    <exon start="46514" stop="46315"/>
                    <exon start="45940" stop="45892"/>
                    <exon start="45662" stop="45423"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMVHVAGVFILVGIAVLAAVEGRNVLKLPSEASRFFDDADDSVGTRWAVLLAGSNGYWNYRHQADVCHAYQLLRKGGLKDENIIVFMYDDIAHHEENPRPGVIINSPAGEDVYEGVPKDYTGDDVNVHNFLAVLLGNKTALTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGMPTNPYLYADDLIAVLKKKHAAGTYKSLVLYIEACESGSIFEGLLPNGLNIYATTASNAEESSWGTYCPGEYPSPPPEYETCLGDLYAVSWMEDSEMHNLRTENLRQQYHLVKKRTANGNTAYGSHVMQFGDLQLSMESLFRFMGTNPANDNYTYVDDNSLLASSKAVNQRDADLLHFWDKVCPNKRPLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45070" stop="44837"/>
                    <exon start="44745" stop="44563"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSILPQCWQFRKAPEGSARKVEAQKQFTEAMSHRMHLDERIALVGKLLFGIQKGPEVLKHVRSAGQPLVDDWACLKSFVRTFESHCGSLSQYGMKHMRSIANICNAGIQMEQMVEASAQACPSIPSNIWSSLHRGFSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="49619" e_stop="49426"/>
            <exon e_start="48037" e_stop="47873"/>
            <exon e_start="47799" e_stop="47643"/>
            <exon e_start="46699" e_stop="46614"/>
            <exon e_start="46514" e_stop="46315"/>
            <exon e_start="45940" e_stop="45892"/>
            <exon e_start="45662" e_stop="45461"/>
            <exon e_start="44927" e_stop="44837"/>
            <exon e_start="44745" e_stop="44320"/>
            <exon e_start="43930" e_stop="43923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.266" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49619" e_stop="49426" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="49425" i_stop="48038" i_length="1388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48037" e_stop="47873" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.266">
            <gDNA_intron_boundary i_start="47872" i_stop="47800" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47799" e_stop="47643" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="47642" i_stop="46700" i_length="943"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46699" e_stop="46614" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46613" i_stop="46515" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46514" e_stop="46315" e_length="200"/>
          </exon>
          <intron i_serial="5" don_prob="0.808" acc_prob="0.937">
            <gDNA_intron_boundary i_start="46314" i_stop="45941" i_length="374"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45940" e_stop="45892" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45891" i_stop="45663" i_length="229"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45662" e_stop="45461" e_length="202"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45460" i_stop="44928" i_length="533"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44927" e_stop="44837" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44836" i_stop="44746" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44745" e_stop="44320" e_length="426"/>
          </exon>
          <intron i_serial="9" don_prob="0.855" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44319" i_stop="43931" i_length="389"/>
          </intron>
          <exon e_serial="10" e_score="0.750">
            <gDNA_exon_boundary e_start="43930" e_stop="43923" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49619" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49608" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49606" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49602" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49584" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49550" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49426"/>
              <exon start="48037" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47951" stop="47873"/>
              <exon start="47799" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47772" stop="47643"/>
              <exon start="46699" stop="46614"/>
              <exon start="46514" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46493" stop="46315"/>
              <exon start="45940" stop="45892"/>
              <exon start="45662" stop="45461"/>
              <exon start="44927" stop="44837"/>
              <exon start="44745" stop="44576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44916" stop="44837"/>
              <exon start="44745" stop="44414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44865" stop="44837"/>
              <exon start="44745" stop="44327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44738" stop="44320"/>
              <exon start="43930" stop="43923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44708" stop="44320"/>
              <exon start="43930" stop="43923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATAATAATGGTTCACGTCGCCGGAGTTTTCATCCTCGTCGGAATCGCCGTGCTTGCCGCCGTCGAAGGACGTAATGTTTTGAAACTTCCGTCGGAAGCTTCCAGATTCTTCGATGACGCAGATGACTCTGTTGGAACCAGATGGGCCGTCCTTCTCGCCGGATCAAATGGTTATTGGAATTATAGACATCAG : GCTGATGTATGCCATGCGTATCAGCTATTGAGAAAAGGTGGTCTCAAAGATGAAAATATTATTGTCTTCATGTATGATGACATTGCTCACCATGAAGAGAACCCAAGACCAGGAGTTATTATTAATAGTCCTGCCGGTGAGGATGTTTACGAAGGAGTTCCTAAG : GATTACACGGGAGATGATGTTAATGTGCACAACTTTTTAGCTGTTCTCCTTGGTAACAAAACTGCTCTTACTGGAGGTAGCGGAAAGGTGGTGAATAGTGGTCCAAATGATCATATTTTCATATTCTATAGTGATCATGGTGGCCCTGGCGTGCTTG : GGATGCCTACCAATCCTTATCTATATGCCGATGATCTAATTGCTGTGTTGAAAAAGAAGCATGCCGCTGGGACATATAAAAGCTTG : GTATTGTACATTGAAGCTTGCGAGTCTGGAAGTATATTTGAGGGACTTCTTCCTAATGGTCTAAATATTTATGCCACAACAGCTTCAAATGCTGAAGAAAGCAGCTGGGGAACCTATTGTCCTGGAGAATATCCTAGTCCTCCTCCTGAATATGAGACTTGCTTGGGTGATTTGTATGCTGTTTCCTGGATGGAGGACAG : TGAAATGCACAACTTGCGGACTGAAAATTTGAGGCAGCAGTATCACTTG : GTCAAAAAGAGAACTGCAAATGGAAATACTGCCTATGGTTCCCATGTCATGCAATTTGGTGATCTACAACTGAGTATGGAGTCTCTATTCAGGTTTATGGGTACAAATCCTGCAAATGATAACTACACTTATGTAGATGACAATTCCTTGTTGGCATCATCAAAGGCTGTCAACCAGCGTGATGCAGATCTTTTACATTTCT : GTTTGGAATTCAAAAAGGTCCTGAGGTGCTGAAGCATGTTCGATCTGCGGGTCAGCCTCTTGTTGATGATTGGGCCTGCCTTAAATCTTTT : GTAAGAACATTTGAGTCGCACTGCGGATCGTTATCCCAATATGGAATGAAACACATGCGTTCCATTGCCAATATCTGCAATGCTGGAATTCAGATGGAGCAGATGGTGGAGGCATCAGCACAAGCTTGTCCTAGCATCCCTTCCAATATTTGGAGTTCCCTCCACAGGGGCTTTAGTGCGTAAAACGCCATGGACTGTGCGGTTTCTCACTTTGATGCTGGTAATAATAATAATTGCTGTTATCAGTGTCATTTCATGTCCTATTTGTAAATTGCAATTTGATCCTGTTATTACTGAAGTCTACTATTATTGATTATCAGGATTCACGTAATGTTTGTAAATTGGTGCTCTGTAAATACAGCTGAACAAGCACGACTTATCATCTTTGATTATATTTGAAAGCACATTTCTCATTGCAAGTAAACA : GAAAAAAG</gDNA_template>
            <first_frame> R  *  *  W  F  T  S  P  E  F  S  S  S  S  E  S  P  C  L  P  P  S  K  D  V  M  F  *  N  F  R  R  K  L  P  D  S  S  M  T  Q  M  T  L  L  E  P  D  G  P  S  F  S  P  D  Q  M  V  I  G  I  I  D  I  R :   L  M  Y  A  M  R  I  S  Y  *  E  K  V  V  S  K  M  K  I  L  L  S  S  C  M  M  T  L  L  T  M  K  R  T  Q  D  Q  E  L  L  L  I  V  L  P  V  R  M  F  T  K  E  F  L  R :   I  T  R  E  M  M  L  M  C  T  T  F  *  L  F  S  L  V  T  K  L  L  L  L  E  V  A  E  R  W  *  I  V  V  Q  M  I  I  F  S  Y  S  I  V  I  M  V  A  L  A  C  L  :  G  C  L  P  I  L  I  Y  M  P  M  I  *  L  L  C  *  K  R  S  M  P  L  G  H  I  K  A  W :   Y  C  T  L  K  L  A  S  L  E  V  Y  L  R  D  F  F  L  M  V  *  I  F  M  P  Q  Q  L  Q  M  L  K  K  A  A  G  E  P  I  V  L  E  N  I  L  V  L  L  L  N  M  R  L  A  W  V  I  C  M  L  F  P  G  W  R  T   : V  K  C  T  T  C  G  L  K  I  *  G  S  S  I  T  W :   S  K  R  E  L  Q  M  E  I  L  P  M  V  P  M  S  C  N  L  V  I  Y  N  *  V  W  S  L  Y  S  G  L  W  V  Q  I  L  Q  M  I  T  T  L  M  *  M  T  I  P  C  W  H  H  Q  R  L  S  T  S  V  M  Q  I  F  Y  I  S  :  V  W  N  S  K  R  S  *  G  A  E  A  C  S  I  C  G  S  A  S  C  *  *  L  G  L  P  *  I  F   : C  K  N  I  *  V  A  L  R  I  V  I  P  I  W  N  E  T  H  A  F  H  C  Q  Y  L  Q  C  W  N  S  D  G  A  D  G  G  G  I  S  T  S  L  S  *  H  P  F  Q  Y  L  E  F  P  P  Q  G  L  *  C  V  K  R  H  G  L  C  G  F  S  L  *  C  W  *  *  *  *  L  L  L  S  V  S  F  H  V  L  F  V  N  C  N  L  I  L  L  L  L  K  S  T  I  I  D  Y  Q  D  S  R  N  V  C  K  L  V  L  C  K  Y  S  *  T  S  T  T  Y  H  L  *  L  Y  L  K  A  H  F  S  L  Q  V  N   : R  K  K </first_frame>
            <second_frame>  D  N  N  G  S  R  R  R  S  F  H  P  R  R  N  R  R  A  C  R  R  R  R  T  *  C  F  E  T  S  V  G  S  F  Q  I  L  R  *  R  R  *  L  C  W  N  Q  M  G  R  P  S  R  R  I  K  W  L  L  E  L  *  T  S   : G  *  C  M  P  C  V  S  A  I  E  K  R  W  S  Q  R  *  K  Y  Y  C  L  H  V  *  *  H  C  S  P  *  R  E  P  K  T  R  S  Y  Y  *  *  S  C  R  *  G  C  L  R  R  S  S  *   : G  L  H  G  R  *  C  *  C  A  Q  L  F  S  C  S  P  W  *  Q  N  C  S  Y  W  R  *  R  K  G  G  E  *  W  S  K  *  S  Y  F  H  I  L  *  *  S  W  W  P  W  R  A  W :   D  A  Y  Q  S  L  S  I  C  R  *  S  N  C  C  V  E  K  E  A  C  R  W  D  I  *  K  L   : G  I  V  H  *  S  L  R  V  W  K  Y  I  *  G  T  S  S  *  W  S  K  Y  L  C  H  N  S  F  K  C  *  R  K  Q  L  G  N  L  L  S  W  R  I  S  *  S  S  S  *  I  *  D  L  L  G  *  F  V  C  C  F  L  D  G  G  Q  :  *  N  A  Q  L  A  D  *  K  F  E  A  A  V  S  L   : G  Q  K  E  N  C  K  W  K  Y  C  L  W  F  P  C  H  A  I  W  *  S  T  T  E  Y  G  V  S  I  Q  V  Y  G  Y  K  S  C  K  *  *  L  H  L  C  R  *  Q  F  L  V  G  I  I  K  G  C  Q  P  A  *  C  R  S  F  T  F  L :   F  G  I  Q  K  G  P  E  V  L  K  H  V  R  S  A  G  Q  P  L  V  D  D  W  A  C  L  K  S  F  :  V  R  T  F  E  S  H  C  G  S  L  S  Q  Y  G  M  K  H  M  R  S  I  A  N  I  C  N  A  G  I  Q  M  E  Q  M  V  E  A  S  A  Q  A  C  P  S  I  P  S  N  I  W  S  S  L  H  R  G  F  S  A  *  N  A  M  D  C  A  V  S  H  F  D  A  G  N  N  N  N  C  C  Y  Q  C  H  F  M  S  Y  L  *  I  A  I  *  S  C  Y  Y  *  S  L  L  L  L  I  I  R  I  H  V  M  F  V  N  W  C  S  V  N  T  A  E  Q  A  R  L  I  I  F  D  Y  I  *  K  H  I  S  H  C  K  *  T  :  E  K   </second_frame>
            <third_frame>   I  I  M  V  H  V  A  G  V  F  I  L  V  G  I  A  V  L  A  A  V  E  G  R  N  V  L  K  L  P  S  E  A  S  R  F  F  D  D  A  D  D  S  V  G  T  R  W  A  V  L  L  A  G  S  N  G  Y  W  N  Y  R  H  Q  :  A  D  V  C  H  A  Y  Q  L  L  R  K  G  G  L  K  D  E  N  I  I  V  F  M  Y  D  D  I  A  H  H  E  E  N  P  R  P  G  V  I  I  N  S  P  A  G  E  D  V  Y  E  G  V  P  K  :  D  Y  T  G  D  D  V  N  V  H  N  F  L  A  V  L  L  G  N  K  T  A  L  T  G  G  S  G  K  V  V  N  S  G  P  N  D  H  I  F  I  F  Y  S  D  H  G  G  P  G  V  L   : G  M  P  T  N  P  Y  L  Y  A  D  D  L  I  A  V  L  K  K  K  H  A  A  G  T  Y  K  S  L  :  V  L  Y  I  E  A  C  E  S  G  S  I  F  E  G  L  L  P  N  G  L  N  I  Y  A  T  T  A  S  N  A  E  E  S  S  W  G  T  Y  C  P  G  E  Y  P  S  P  P  P  E  Y  E  T  C  L  G  D  L  Y  A  V  S  W  M  E  D  S :   E  M  H  N  L  R  T  E  N  L  R  Q  Q  Y  H  L  :  V  K  K  R  T  A  N  G  N  T  A  Y  G  S  H  V  M  Q  F  G  D  L  Q  L  S  M  E  S  L  F  R  F  M  G  T  N  P  A  N  D  N  Y  T  Y  V  D  D  N  S  L  L  A  S  S  K  A  V  N  Q  R  D  A  D  L  L  H  F   : C  L  E  F  K  K  V  L  R  C  *  S  M  F  D  L  R  V  S  L  L  L  M  I  G  P  A  L  N  L  L :   *  E  H  L  S  R  T  A  D  R  Y  P  N  M  E  *  N  T  C  V  P  L  P  I  S  A  M  L  E  F  R  W  S  R  W  W  R  H  Q  H  K  L  V  L  A  S  L  P  I  F  G  V  P  S  T  G  A  L  V  R  K  T  P  W  T  V  R  F  L  T  L  M  L  V  I  I  I  I  A  V  I  S  V  I  S  C  P  I  C  K  L  Q  F  D  P  V  I  T  E  V  Y  Y  Y  *  L  S  G  F  T  *  C  L  *  I  G  A  L  *  I  Q  L  N  K  H  D  L  S  S  L  I  I  F  E  S  T  F  L  I  A  S  K  Q :   K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49617" stop="49426"/>
                    <exon start="48037" stop="47873"/>
                    <exon start="47799" stop="47643"/>
                    <exon start="46699" stop="46614"/>
                    <exon start="46514" stop="46315"/>
                    <exon start="45940" stop="45892"/>
                    <exon start="45662" stop="45461"/>
                    <exon start="44927" stop="44896"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMVHVAGVFILVGIAVLAAVEGRNVLKLPSEASRFFDDADDSVGTRWAVLLAGSNGYWNYRHQADVCHAYQLLRKGGLKDENIIVFMYDDIAHHEENPRPGVIINSPAGEDVYEGVPKDYTGDDVNVHNFLAVLLGNKTALTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGMPTNPYLYADDLIAVLKKKHAAGTYKSLVLYIEACESGSIFEGLLPNGLNIYATTASNAEESSWGTYCPGEYPSPPPEYETCLGDLYAVSWMEDSEMHNLRTENLRQQYHLVKKRTANGNTAYGSHVMQFGDLQLSMESLFRFMGTNPANDNYTYVDDNSLLASSKAVNQRDADLLHFCLEFKKVLRC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44696" stop="44433"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTCVPLPISAMLEFRWSRWWRHQHKLVLASLPIFGVPSTGALVRKTPWTVRFLTLMLVIIIIAVISVISCPICKLQFDPVITEVYYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="44317" PGL_stop="44719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44317" e_stop="44719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="44317" e_stop="44719" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44317" stop="44719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258910" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGTTTACTTGCAATGAGAAATGTGCTTTCAAATATAATCAAAGATGATAAGTCGTGCTTGTTCAGCTGTATTTACAGAGCACCAATTTACAAACATTACGTGAATCCTGATAATCAATAATAGTAGACTTCAGTAATAACAGGATCAAATTGCAATTTACAAATAGGACATGAAATGACACTGATAACAGCAATTATTATTATTACCAGCATCAAAGTGAGAAACCGCACAGTCCATGGCGTTTTACGCACTAAAGCCCCTGTGGAGGGAACTCCAAATATTGGAAGGGATGCTAGGACAAGCTTGTGCTGATGCCTCCACCATCTGCTCCATCTGAATTCCAGCATTGCAGATATTGGCAATGGAACGCATGTGTTTCATTCCATATTGGGATAACGAT</gDNA_template>
            <first_frame> Y  C  L  L  A  M  R  N  V  L  S  N  I  I  K  D  D  K  S  C  L  F  S  C  I  Y  R  A  P  I  Y  K  H  Y  V  N  P  D  N  Q  *  *  *  T  S  V  I  T  G  S  N  C  N  L  Q  I  G  H  E  M  T  L  I  T  A  I  I  I  I  T  S  I  K  V  R  N  R  T  V  H  G  V  L  R  T  K  A  P  V  E  G  T  P  N  I  G  R  D  A  R  T  S  L  C  *  C  L  H  H  L  L  H  L  N  S  S  I  A  D  I  G  N  G  T  H  V  F  H  S  I  L  G  *  R  </first_frame>
            <second_frame>  T  V  Y  L  Q  *  E  M  C  F  Q  I  *  S  K  M  I  S  R  A  C  S  A  V  F  T  E  H  Q  F  T  N  I  T  *  I  L  I  I  N  N  S  R  L  Q  *  *  Q  D  Q  I  A  I  Y  K  *  D  M  K  *  H  *  *  Q  Q  L  L  L  L  P  A  S  K  *  E  T  A  Q  S  M  A  F  Y  A  L  K  P  L  W  R  E  L  Q  I  L  E  G  M  L  G  Q  A  C  A  D  A  S  T  I  C  S  I  *  I  P  A  L  Q  I  L  A  M  E  R  M  C  F  I  P  Y  W  D  N  D </second_frame>
            <third_frame>   L  F  T  C  N  E  K  C  A  F  K  Y  N  Q  R  *  *  V  V  L  V  Q  L  Y  L  Q  S  T  N  L  Q  T  L  R  E  S  *  *  S  I  I  V  D  F  S  N  N  R  I  K  L  Q  F  T  N  R  T  *  N  D  T  D  N  S  N  Y  Y  Y  Y  Q  H  Q  S  E  K  P  H  S  P  W  R  F  T  H  *  S  P  C  G  G  N  S  K  Y  W  K  G  C  *  D  K  L  V  L  M  P  P  P  S  A  P  S  E  F  Q  H  C  R  Y  W  Q  W  N  A  C  V  S  F  H  I  G  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0127K17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="51413" PGL_stop="52996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51413" e_stop="52031"/>
            <exon e_start="52955" e_stop="52996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51413" e_stop="52031" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52032" i_stop="52954" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52955" e_stop="52996" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51413" stop="52031"/>
              <exon start="52955" stop="52996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51414" stop="52003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTTTCACACAGTCGTTTGATCTTTTGCCGACTCTTCCCTTGTTTTTTTTTCTCAACTGTAATCTCTTTCTTCATATTATTGTGCTTACCAACAAGGCCTGTTACATGATCACAGAAAAATATAATAGTAATTTTGTGAAATTATACATCTTTTTTGCTTCTGTGTGCTTCAGAAATCTCTTGATTTCTATGTAAAGATTGTGTTTTGGGTATTTGGGTCGGTAGAATTCTTGTTTTTTTAGGTGGGGTTTGCTTGGTTTTCTTCAATTTTGATTGGTTTTGTTGAAAAGTTCAGAAATTTGATGTAATTGTACGGATTTCTTTGAATTTTGGAAGTTGAATGTATGGTAAAGTTTCGTTTTTTTGGTTTAATTTAATGAATGTTGGAGATTGGGTGAACCTGTTGAGAAGCTATTAAAGGGAAGAAATGAAGAGAGGAAAGGGTGAAGAGAAGTTGATGGGACCTATGTTTCCAAGGCTTCATGTTAATGATACAGAAAAGGGAGGTCCAAAAGCACCTCCAAGAAACAAAATGGCTCTTTATGAGCAGCTCAGTATTCCTTCTCAGAGATTCAAATATGGGATTTCGAATAATCGCAACAATGCAGATATTCAG : GGAAATGGACGTGAAAATGATGATTTTTTCTCAGTACAACTT</gDNA_template>
            <first_frame> S  I  F  T  Q  S  F  D  L  L  P  T  L  P  L  F  F  F  L  N  C  N  L  F  L  H  I  I  V  L  T  N  K  A  C  Y  M  I  T  E  K  Y  N  S  N  F  V  K  L  Y  I  F  F  A  S  V  C  F  R  N  L  L  I  S  M  *  R  L  C  F  G  Y  L  G  R  *  N  S  C  F  F  R  W  G  L  L  G  F  L  Q  F  *  L  V  L  L  K  S  S  E  I  *  C  N  C  T  D  F  F  E  F  W  K  L  N  V  W  *  S  F  V  F  L  V  *  F  N  E  C  W  R  L  G  E  P  V  E  K  L  L  K  G  R  N  E  E  R  K  G  *  R  E  V  D  G  T  Y  V  S  K  A  S  C  *  *  Y  R  K  G  R  S  K  S  T  S  K  K  Q  N  G  S  L  *  A  A  Q  Y  S  F  S  E  I  Q  I  W  D  F  E  *  S  Q  Q  C  R  Y  S   : G  K  W  T  *  K  *  *  F  F  L  S  T  T  </first_frame>
            <second_frame>  P  F  S  H  S  R  L  I  F  C  R  L  F  P  C  F  F  F  S  T  V  I  S  F  F  I  L  L  C  L  P  T  R  P  V  T  *  S  Q  K  N  I  I  V  I  L  *  N  Y  T  S  F  L  L  L  C  A  S  E  I  S  *  F  L  C  K  D  C  V  L  G  I  W  V  G  R  I  L  V  F  L  G  G  V  C  L  V  F  F  N  F  D  W  F  C  *  K  V  Q  K  F  D  V  I  V  R  I  S  L  N  F  G  S  *  M  Y  G  K  V  S  F  F  W  F  N  L  M  N  V  G  D  W  V  N  L  L  R  S  Y  *  R  E  E  M  K  R  G  K  G  E  E  K  L  M  G  P  M  F  P  R  L  H  V  N  D  T  E  K  G  G  P  K  A  P  P  R  N  K  M  A  L  Y  E  Q  L  S  I  P  S  Q  R  F  K  Y  G  I  S  N  N  R  N  N  A  D  I  Q  :  G  N  G  R  E  N  D  D  F  F  S  V  Q  L </second_frame>
            <third_frame>   H  F  H  T  V  V  *  S  F  A  D  S  S  L  V  F  F  S  Q  L  *  S  L  S  S  Y  Y  C  A  Y  Q  Q  G  L  L  H  D  H  R  K  I  *  *  *  F  C  E  I  I  H  L  F  C  F  C  V  L  Q  K  S  L  D  F  Y  V  K  I  V  F  W  V  F  G  S  V  E  F  L  F  F  *  V  G  F  A  W  F  S  S  I  L  I  G  F  V  E  K  F  R  N  L  M  *  L  Y  G  F  L  *  I  L  E  V  E  C  M  V  K  F  R  F  F  G  L  I  *  *  M  L  E  I  G  *  T  C  *  E  A  I  K  G  K  K  *  R  E  E  R  V  K  R  S  *  W  D  L  C  F  Q  G  F  M  L  M  I  Q  K  R  E  V  Q  K  H  L  Q  E  T  K  W  L  F  M  S  S  S  V  F  L  L  R  D  S  N  M  G  F  R  I  I  A  T  M  Q  I  F  R :   E  M  D  V  K  M  M  I  F  S  Q  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51834" stop="52031"/>
                    <exon start="52955" stop="52996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REEMKRGKGEEKLMGPMFPRLHVNDTEKGGPKAPPRNKMALYEQLSIPSQRFKYGISNNRNNADIQGNGRENDDFFSVQL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51874" stop="52031"/>
                    <exon start="52955" stop="52994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDLCFQGFMLMIQKREVQKHLQETKWLFMSSSVFLLRDSNMGFRIIATMQIFREMDVKMMIFSQYN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51413" stop="51610"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFTQSFDLLPTLPLFFFLNCNLFLHIIVLTNKACYMITEKYNSNFVKLYIFFASVCFRNLLISM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="53098" PGL_stop="57007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53098" e_stop="53727"/>
            <exon e_start="56466" e_stop="56517"/>
            <exon e_start="56786" e_stop="57007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.803" e_score="0.998"/>
          <exon-intron don_prob="0.737" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53098" e_stop="53727" e_length="630"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.803">
            <gDNA_intron_boundary i_start="53728" i_stop="56465" i_length="2738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56466" e_stop="56517" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.737" acc_prob="0.890">
            <gDNA_intron_boundary i_start="56518" i_stop="56785" i_length="268"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="56786" e_stop="57007" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53098" stop="53727"/>
              <exon start="56466" stop="56517"/>
              <exon start="56786" stop="57007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53263" stop="53709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTAGAGTTCCTATATTTGTTAAATCCAAGGCGAGCCAAGGAAATGGAAAGCTTTATAGTACTCTGGATGGTAGAAAGCTCTCTGCCTCTACTGCAGTAATTTCGGGGCATTCTAGAAAAGACTTGAATGATGAGAACTTCAAACAGATCGCCGTAGGCAGAGAGATTTCGTGCAACTCTACCTCAATTCCATCAATGGATAAGCTAGATGATCTTCTGAAGAAAGCTGATGTACAATTGCAATATGAACCGAGAAATGACCCTGATAATACTTTAGGCATATTGTGTAAGAATGATCTGCTACAACCGGAATGCAGAGTTGATCCTCAAGTTGGTGGCACCATGCTATCTGAACCTGTTAGGGTTGTTGATATTGGTGATTCTTCTCTTCTTGTGAAGGATGTTGCATCAAAAGAGCATATAATTCCTAATAATAATCAAAGTAATGATAAGGAATCAAAGGAAGACAAGGCATCTGAATCATTACAAACAAAAATTGTGAACCAGGATGACGACTTATCAGAGACTTCCATGGTGGAATCTATATTTGGAATGTACATATCTCCTGACGATGTTGTTGCGATAATAGGTCAAAAACATTTCTGGAATGCCAGAAGAGCTATTGCCAC : CCAGCAAAGAGCGTTTGCGGTTCAAGTTTTTGAGTTGCATCGTCTAATAAAG : GTCCAGAGACTCATAGCTAGTTCACAAAGCATGCTTGAAGATAGTGCTTATTTAAGCAAAGCGGTAAAGGATTCATCTCCTAAAAAACTTCCATTGGAGTATATCGCAAGAGATGGTCACAATGTTCCGAAGCAGAGGAAGAATTTTGAGAAGCCAAACACTAGGATGGAATGTTCTGCGGAAAATACAGAAGGCAAACCTGTGAAGGATTCATCTGCTAAA</gDNA_template>
            <first_frame> L  *  S  S  Y  I  C  *  I  Q  G  E  P  R  K  W  K  A  L  *  Y  S  G  W  *  K  A  L  C  L  Y  C  S  N  F  G  A  F  *  K  R  L  E  *  *  E  L  Q  T  D  R  R  R  Q  R  D  F  V  Q  L  Y  L  N  S  I  N  G  *  A  R  *  S  S  E  E  S  *  C  T  I  A  I  *  T  E  K  *  P  *  *  Y  F  R  H  I  V  *  E  *  S  A  T  T  G  M  Q  S  *  S  S  S  W  W  H  H  A  I  *  T  C  *  G  C  *  Y  W  *  F  F  S  S  C  E  G  C  C  I  K  R  A  Y  N  S  *  *  *  S  K  *  *  *  G  I  K  G  R  Q  G  I  *  I  I  T  N  K  N  C  E  P  G  *  R  L  I  R  D  F  H  G  G  I  Y  I  W  N  V  H  I  S  *  R  C  C  C  D  N  R  S  K  T  F  L  E  C  Q  K  S  Y  C  H  :  P  A  K  S  V  C  G  S  S  F  *  V  A  S  S  N  K   : G  P  E  T  H  S  *  F  T  K  H  A  *  R  *  C  L  F  K  Q  S  G  K  G  F  I  S  *  K  T  S  I  G  V  Y  R  K  R  W  S  Q  C  S  E  A  E  E  E  F  *  E  A  K  H  *  D  G  M  F  C  G  K  Y  R  R  Q  T  C  E  G  F  I  C  *  </first_frame>
            <second_frame>  F  R  V  P  I  F  V  K  S  K  A  S  Q  G  N  G  K  L  Y  S  T  L  D  G  R  K  L  S  A  S  T  A  V  I  S  G  H  S  R  K  D  L  N  D  E  N  F  K  Q  I  A  V  G  R  E  I  S  C  N  S  T  S  I  P  S  M  D  K  L  D  D  L  L  K  K  A  D  V  Q  L  Q  Y  E  P  R  N  D  P  D  N  T  L  G  I  L  C  K  N  D  L  L  Q  P  E  C  R  V  D  P  Q  V  G  G  T  M  L  S  E  P  V  R  V  V  D  I  G  D  S  S  L  L  V  K  D  V  A  S  K  E  H  I  I  P  N  N  N  Q  S  N  D  K  E  S  K  E  D  K  A  S  E  S  L  Q  T  K  I  V  N  Q  D  D  D  L  S  E  T  S  M  V  E  S  I  F  G  M  Y  I  S  P  D  D  V  V  A  I  I  G  Q  K  H  F  W  N  A  R  R  A  I  A  T :   Q  Q  R  A  F  A  V  Q  V  F  E  L  H  R  L  I  K  :  V  Q  R  L  I  A  S  S  Q  S  M  L  E  D  S  A  Y  L  S  K  A  V  K  D  S  S  P  K  K  L  P  L  E  Y  I  A  R  D  G  H  N  V  P  K  Q  R  K  N  F  E  K  P  N  T  R  M  E  C  S  A  E  N  T  E  G  K  P  V  K  D  S  S  A  K </second_frame>
            <third_frame>   L  E  F  L  Y  L  L  N  P  R  R  A  K  E  M  E  S  F  I  V  L  W  M  V  E  S  S  L  P  L  L  Q  *  F  R  G  I  L  E  K  T  *  M  M  R  T  S  N  R  S  P  *  A  E  R  F  R  A  T  L  P  Q  F  H  Q  W  I  S  *  M  I  F  *  R  K  L  M  Y  N  C  N  M  N  R  E  M  T  L  I  I  L  *  A  Y  C  V  R  M  I  C  Y  N  R  N  A  E  L  I  L  K  L  V  A  P  C  Y  L  N  L  L  G  L  L  I  L  V  I  L  L  F  L  *  R  M  L  H  Q  K  S  I  *  F  L  I  I  I  K  V  M  I  R  N  Q  R  K  T  R  H  L  N  H  Y  K  Q  K  L  *  T  R  M  T  T  Y  Q  R  L  P  W  W  N  L  Y  L  E  C  T  Y  L  L  T  M  L  L  R  *  *  V  K  N  I  S  G  M  P  E  E  L  L  P   : P  S  K  E  R  L  R  F  K  F  L  S  C  I  V  *  *  R :   S  R  D  S  *  L  V  H  K  A  C  L  K  I  V  L  I  *  A  K  R  *  R  I  H  L  L  K  N  F  H  W  S  I  S  Q  E  M  V  T  M  F  R  S  R  G  R  I  L  R  S  Q  T  L  G  W  N  V  L  R  K  I  Q  K  A  N  L  *  R  I  H  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53099" stop="53727"/>
                    <exon start="56466" stop="56517"/>
                    <exon start="56786" stop="57007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRVPIFVKSKASQGNGKLYSTLDGRKLSASTAVISGHSRKDLNDENFKQIAVGREISCNSTSIPSMDKLDDLLKKADVQLQYEPRNDPDNTLGILCKNDLLQPECRVDPQVGGTMLSEPVRVVDIGDSSLLVKDVASKEHIIPNNNQSNDKESKEDKASESLQTKIVNQDDDLSETSMVESIFGMYISPDDVVAIIGQKHFWNARRAIATQQRAFAVQVFELHRLIKVQRLIASSQSMLEDSAYLSKAVKDSSPKKLPLEYIARDGHNVPKQRKNFEKPNTRMECSAENTEGKPVKDSSAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="57261" PGL_stop="58098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57261" e_stop="58098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57261" e_stop="58098" e_length="838"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57261" stop="57953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57333" stop="58098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATGACTCCTTCCGAAGGACTAGTATACAAGCCATATCTTGGACCCGGAGTCACGAGTTCAATCTGTGGAGGTTATGGACCCCCAGGATCAACTCCAATAATCGGAAACCATTCAGCTCCATCTTATGGAATTCCTGCTTCTCATCATCAGTATCAAGGGGTCAGAATGCCATTTACACCTCCAGCTGGTCACAACTACTTCCCTTCGTATGGCATACCAGCTATTAATCCAGCAATCTCATCTTCAGCTGTCGATCAATCAAGCCTGTTTGTTGCTCAAGGTTTACAAGGTCAGTTATCAGGAGGAGGAGCTAATTTTTCTGTTCAACGTCAGAACTCGAGTAACATGCCAAGCAATAAGAATGGAACTTTCCCAGAGGTGAAATCTCGTTCCTGTAGAGATGCTGAAATGCAGGCCAGCACTGCAAGCAGTCCAAGTGGAACAGCTAACAAAATAACTGTGGACAACGCCACAGAACGAAGAAACGTTCTTCCTCTATTCCCAACTTCACCAGCTACCAAGAACCTGGATATAAGCTCCCAACCTCAACTGCCTAGTCATCATGCTCGAGTCATCAAAGTCGTACCGCGTAATGCAAGGTCTGCCACAGAATCTGCTGCTCGGATTTTTCAGTCTATACAAGAAGAGAGAAAACAGTATGATTCTGTTGTTAATTAATCATCTATAGACAGTAGTTACTTATCTAGTCATTTAGGTGACCATTAGTTCATTATAATGTGTTTTATGTATAATTTCTTGTAACCTTTTAGATAACTGGAACTTATTTGGTAAGTGAGTCATTTTGTAAATAACATACTTACCTTATAATTATATAA</gDNA_template>
            <first_frame> S  *  L  L  P  K  D  *  Y  T  S  H  I  L  D  P  E  S  R  V  Q  S  V  E  V  M  D  P  Q  D  Q  L  Q  *  S  E  T  I  Q  L  H  L  M  E  F  L  L  L  I  I  S  I  K  G  S  E  C  H  L  H  L  Q  L  V  T  T  T  S  L  R  M  A  Y  Q  L  L  I  Q  Q  S  H  L  Q  L  S  I  N  Q  A  C  L  L  L  K  V  Y  K  V  S  Y  Q  E  E  E  L  I  F  L  F  N  V  R  T  R  V  T  C  Q  A  I  R  M  E  L  S  Q  R  *  N  L  V  P  V  E  M  L  K  C  R  P  A  L  Q  A  V  Q  V  E  Q  L  T  K  *  L  W  T  T  P  Q  N  E  E  T  F  F  L  Y  S  Q  L  H  Q  L  P  R  T  W  I  *  A  P  N  L  N  C  L  V  I  M  L  E  S  S  K  S  Y  R  V  M  Q  G  L  P  Q  N  L  L  L  G  F  F  S  L  Y  K  K  R  E  N  S  M  I  L  L  L  I  N  H  L  *  T  V  V  T  Y  L  V  I  *  V  T  I  S  S  L  *  C  V  L  C  I  I  S  C  N  L  L  D  N  W  N  L  F  G  K  *  V  I  L  *  I  T  Y  L  P  Y  N  Y  I  </first_frame>
            <second_frame>  H  D  S  F  R  R  T  S  I  Q  A  I  S  W  T  R  S  H  E  F  N  L  W  R  L  W  T  P  R  I  N  S  N  N  R  K  P  F  S  S  I  L  W  N  S  C  F  S  S  S  V  S  R  G  Q  N  A  I  Y  T  S  S  W  S  Q  L  L  P  F  V  W  H  T  S  Y  *  S  S  N  L  I  F  S  C  R  S  I  K  P  V  C  C  S  R  F  T  R  S  V  I  R  R  R  S  *  F  F  C  S  T  S  E  L  E  *  H  A  K  Q  *  E  W  N  F  P  R  G  E  I  S  F  L  *  R  C  *  N  A  G  Q  H  C  K  Q  S  K  W  N  S  *  Q  N  N  C  G  Q  R  H  R  T  K  K  R  S  S  S  I  P  N  F  T  S  Y  Q  E  P  G  Y  K  L  P  T  S  T  A  *  S  S  C  S  S  H  Q  S  R  T  A  *  C  K  V  C  H  R  I  C  C  S  D  F  S  V  Y  T  R  R  E  K  T  V  *  F  C  C  *  L  I  I  Y  R  Q  *  L  L  I  *  S  F  R  *  P  L  V  H  Y  N  V  F  Y  V  *  F  L  V  T  F  *  I  T  G  T  Y  L  V  S  E  S  F  C  K  *  H  T  Y  L  I  I  I  * </second_frame>
            <third_frame>   M  T  P  S  E  G  L  V  Y  K  P  Y  L  G  P  G  V  T  S  S  I  C  G  G  Y  G  P  P  G  S  T  P  I  I  G  N  H  S  A  P  S  Y  G  I  P  A  S  H  H  Q  Y  Q  G  V  R  M  P  F  T  P  P  A  G  H  N  Y  F  P  S  Y  G  I  P  A  I  N  P  A  I  S  S  S  A  V  D  Q  S  S  L  F  V  A  Q  G  L  Q  G  Q  L  S  G  G  G  A  N  F  S  V  Q  R  Q  N  S  S  N  M  P  S  N  K  N  G  T  F  P  E  V  K  S  R  S  C  R  D  A  E  M  Q  A  S  T  A  S  S  P  S  G  T  A  N  K  I  T  V  D  N  A  T  E  R  R  N  V  L  P  L  F  P  T  S  P  A  T  K  N  L  D  I  S  S  Q  P  Q  L  P  S  H  H  A  R  V  I  K  V  V  P  R  N  A  R  S  A  T  E  S  A  A  R  I  F  Q  S  I  Q  E  E  R  K  Q  Y  D  S  V  V  N  *  S  S  I  D  S  S  Y  L  S  S  H  L  G  D  H  *  F  I  I  M  C  F  M  Y  N  F  L  *  P  F  R  *  L  E  L  I  W  *  V  S  H  F  V  N  N  I  L  T  L  *  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57263" stop="57940"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTPSEGLVYKPYLGPGVTSSICGGYGPPGSTPIIGNHSAPSYGIPASHHQYQGVRMPFTPPAGHNYFPSYGIPAINPAISSSAVDQSSLFVAQGLQGQLSGGGANFSVQRQNSSNMPSNKNGTFPEVKSRSCRDAEMQASTASSPSGTANKITVDNATERRNVLPLFPTSPATKNLDISSQPQLPSHHARVIKVVPRNARSATESAARIFQSIQEERKQYDSVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="66592" PGL_stop="59949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66592" e_stop="66451"/>
            <exon e_start="65473" e_stop="65344"/>
            <exon e_start="65238" e_stop="65161"/>
            <exon e_start="64211" e_stop="64104"/>
            <exon e_start="63071" e_stop="63009"/>
            <exon e_start="62893" e_stop="62732"/>
            <exon e_start="62400" e_stop="62156"/>
            <exon e_start="61978" e_stop="61649"/>
            <exon e_start="61553" e_stop="61389"/>
            <exon e_start="61240" e_stop="59949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.254" acc_prob="0.946" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.730" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.800" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="0.997" acc_prob="0.912" e_score="0.997"/>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="66592" e_stop="66451" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.254" acc_prob="0.946">
            <gDNA_intron_boundary i_start="66450" i_stop="65474" i_length="977"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="65473" e_stop="65344" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65238" e_stop="65161" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65160" i_stop="64212" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64211" e_stop="64104" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.931">
            <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63071" e_stop="63009" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62893" e_stop="62732" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.730" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="62400" e_stop="62156" e_length="245"/>
          </exon>
          <intron i_serial="7" don_prob="0.800" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62155" i_stop="61979" i_length="177"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="61978" e_stop="61649" e_length="330"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.912">
            <gDNA_intron_boundary i_start="61648" i_stop="61554" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="61553" e_stop="61389" e_length="165"/>
          </exon>
          <intron i_serial="9" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61388" i_stop="61241" i_length="148"/>
          </intron>
          <exon e_serial="10" e_score="0.976">
            <gDNA_exon_boundary e_start="61240" e_stop="59949" e_length="1292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66592" stop="66451"/>
              <exon start="65473" stop="65344"/>
              <exon start="65238" stop="65161"/>
              <exon start="64211" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62156"/>
              <exon start="61978" stop="61649"/>
              <exon start="61553" stop="61389"/>
              <exon start="61240" stop="59949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66591" stop="66451"/>
              <exon start="65473" stop="65344"/>
              <exon start="65238" stop="65161"/>
              <exon start="64211" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64211" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64180" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280666" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64180" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280796" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61970" stop="61649"/>
              <exon start="61553" stop="61389"/>
              <exon start="61240" stop="61155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61676" stop="61649"/>
              <exon start="61553" stop="61389"/>
              <exon start="61240" stop="61006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61143" stop="60228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61143" stop="60229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60756" stop="59975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAATATTCCTTCAATCAAATTTATTATAGCTTTCATATTCATACTGAATTGAAAAATTCTTATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATG : TGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAG : TTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAG : ATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGG : GTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA : GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA : GATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGCTAAGGTAACCATAAGTGTTCCTCCTCCTCTTAAATGATTGATAATTTCCATGTTTACTTAAAACTTTTGCAGCACTTCCGTACAACTCTTAGATGTCTGAAGTTCTGGGCCAAAAGACGTTGTGTTTATTCCAAT : GTTACTGGATTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTGCTCGCATTTGCCAGTTTTACCCAAATGCAATCCCTAGTATGCTTGTTTCTAGGTTCTTCCGTGTTTATACACAATGGCGTTGGCCAAATCCTGTGATGTTATGCCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCAAGAATCCTAAAGACAGAACTCATCATATGCCAATCATCACTCCTGCCTACCCTTGCATGAACTCTAGCTATAACGTCTCACCAAGCACTCTTCGAGTAATGATGGACCAATTTCAGATTGGTAACAAGATTTCTGAG : GATGTGGAGTTGAATAAATCACAGTGGCCTGCTCTTTTTGAGCATTATTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTAGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAAAG : ATAGAGCGGGACACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCAAAGCCATGCCCGCATTGTGTTTTTTTCATGGGTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTTCAGCCGTGTGGGGTGGATGTTGAAGTGATAAACGGATAGTGCATGAACTACACTACAAATCCAGCAGCAGGGGTTAAAGGCAGCACAGCATAATCAAGATTTTCCCCAGACAACAAAAATCAACAGCAAGAGAGAGTAGAACTAGAAAGCAGCACCAGAGTCCAGCAGCATAGCTATTGAGGTGAGGTAAGTTTCAAAATTTGAAAGAGAGAGAACATGGATGGTGAAAAGACTGAATTTGTAAATGGCTATATTAGCACTTTGTTTAGAGGGTTGTTT</gDNA_template>
            <first_frame> T  E  Y  S  F  N  Q  I  Y  Y  S  F  H  I  H  T  E  L  K  N  S  Y  F  S  H  S  N  F  V  F  W  F  S  I  S  S  V  Q  *  S  V  K  F  S  S  F  Y   : V  *  W  *  V  R  R  A  *  V  S  L  L  H  H  H  Q  R  N  M  V  S  Q  S  H  Y  L  L  L  D  Q  L  R  Q  I  F  K  E  M  Q  N  W  K  S :   F  *  G  N  Q  N  C  M  R  V  R  K  R  L  Q  G  E  K  K  Y  C  G  D  L  T  R :   L  *  N  N  G  *  N  N  *  L  A  R  E  A  T  *  I  K  W  L  R  M  Q  M  L  S  *  S  P  L  A  L  I  V  *  G :   F  M  D  Q  E  L  T  W  T  H  C  V  L  V  P  A  M  S  I  E  K :   K  I  S  L  S  F  F  M  I  F  *  L  K  W  K  K  F  V  N  F  N  Q  F  L  M  L  M  S  L  L  *  N  S  N  F  K  E  F  Q  L  I  F  F  M  Q  V  *  L  S  W  L  F  L  K :   I  W  I  S  Q  T  N  L  Y  S  V  M  W  M  D  Q  L  F  E  V  *  M  V  V  E  L  L  I  E  Y  *  N  *  F  P  M  L  R  *  P  *  V  F  L  L  L  L  N  D  *  *  F  P  C  L  L  K  T  F  A  A  L  P  Y  N  S  *  M  S  E  V  L  G  Q  K  T  L  C  L  F  Q   : C  Y  W  I  S  W  W  G  E  L  G  S  F  G  C  S  H  L  P  V  L  P  K  C  N  P  *  Y  A  C  F  *  V  L  P  C  L  Y  T  M  A  L  A  K  S  C  D  V  M  P  N  R  R  G  *  T  W  V  S  C  L  G  S  A  Q  E  S  *  R  Q  N  S  S  Y  A  N  H  H  S  C  L  P  L  H  E  L  *  L  *  R  L  T  K  H  S  S  S  N  D  G  P  I  S  D  W  *  Q  D  F  *   : G  C  G  V  E  *  I  T  V  A  C  S  F  *  A  L  F  F  L  *  G  V  Q  K  L  S  P  G  *  N  R  S  S  R  *  *  *  F  A  S  L  E  R  L  G  G  I  T  A  S  T  T  H  A  K   : D  R  A  G  H  Q  W  D  V  A  V  P  S  L  S  *  *  I  C  G  H  V  K  A  M  P  A  L  C  F  F  H  G  F  A  E  A  K  G  C  Q  S  T  R  R  S  T  V  *  Y  P  R  N  S  R  *  V  *  A  R  G  K  H  V  L  L  L  E  T  G  H  G  Y  L  Y  L  A  C  S  *  E  G  N  S  C  L  C  L  S  *  W  V  *  E  T  T  S  I  *  K  Y  N  S  A  Y  S  R  E  R  C  Q  R  L  H  V  F  *  R  K  A  F  K  E  E  A  G  N  P  Y  S  *  C  R  V  R  Q  T  A  E  T  C  F  Y  *  S  S  K  Y  R  I  C  F  A  R  K  C  F  *  S  V  R  R  I  I  T  D  N  H  S  R  G  V  T  S  G  G  *  D  C  W  P  S  K  P  K  F  *  *  *  I  N  R  G  Y  W  G  A  E  T  M  H  F  *  V  K  *  K  F  Q  P  D  S  L  V  I  T  S  S  R  N  L  L  G  V  I  K  Q  G  F  L  D  Q  S  N  I  T  F  F  R  S  Q  E  A  L  C  T  C  E  Q  C  S  R  G  A  P  A  S  Q  T  I  Q  D  D  K  K  V  D  D  D  D  D  E  Q  P  A  R  L  T  R  Y  T  N  L  R  W  V  D  G  V  K  E  L  K  C  A  R  I  K  F  Q  N  S  K  P  L  E  E  F  R  *  V  F  D  S  R  V  V  A  D  G  S  E  R  L  E  A  L  S  R  C  R  M  I  Q  K  T  R  F  Q  P  C  G  V  D  V  E  V  I  N  G  *  C  M  N  Y  T  T  N  P  A  A  G  V  K  G  S  T  A  *  S  R  F  S  P  D  N  K  N  Q  Q  Q  E  R  V  E  L  E  S  S  T  R  V  Q  Q  H  S  Y  *  G  E  V  S  F  K  I  *  K  R  E  N  M  D  G  E  K  T  E  F  V  N  G  Y  I  S  T  L  F  R  G  L  F </first_frame>
            <second_frame>  L  N  I  P  S  I  K  F  I  I  A  F  I  F  I  L  N  *  K  I  L  I  F  L  I  P  I  L  F  S  G  S  V  F  H  R  F  S  D  L  *  S  L  A  A  F  M  :  C  D  G  E  F  G  E  L  K  *  V  C  C  T  T  T  K  E  I  W  C  H  K  A  I  I  S  C  W  T  N  *  D  R  S  S  K  K  C  R  T  G  K   : V  F  E  G  I  R  I  V  *  E  *  G  R  D  C  K  E  R  R  S  T  A  A  T  *  P   : D  C  K  T  M  G  E  T  I  D  S  P  E  R  L  H  R  S  N  G  *  G  C  K  C  Y  H  S  H  L  W  L  L  S  S  R   : G  S  W  T  R  S  *  P  G  H  I  V  C  W  S  L  L  C  Q  S  R   : R  R  F  L  Y  P  S  S  *  Y  F  S  *  N  G  R  S  L  *  T  S  T  S  S  *  C  S  C  P  C  Y  E  I  Q  I  S  R  N  F  N  *  S  S  L  C  K  Y  N  S  L  G  Y  S  *   : R  F  G  Y  L  R  P  I  C  T  L  *  C  G  W  T  N  C  S  K  S  K  W  L  S  S  C  *  S  N  T  E  T  S  S  Q  C  *  G  N  H  K  C  S  S  S  S  *  M  I  D  N  F  H  V  Y  L  K  L  L  Q  H  F  R  T  T  L  R  C  L  K  F  W  A  K  R  R  C  V  Y  S  N  :  V  T  G  F  L  G  G  V  N  W  A  L  L  V  A  R  I  C  Q  F  Y  P  N  A  I  P  S  M  L  V  S  R  F  F  R  V  Y  T  Q  W  R  W  P  N  P  V  M  L  C  P  I  E  E  D  E  L  G  F  L  V  W  D  P  R  K  N  P  K  D  R  T  H  H  M  P  I  I  T  P  A  Y  P  C  M  N  S  S  Y  N  V  S  P  S  T  L  R  V  M  M  D  Q  F  Q  I  G  N  K  I  S  E  :  D  V  E  L  N  K  S  Q  W  P  A  L  F  E  H  Y  F  F  F  E  A  Y  K  N  Y  L  Q  V  E  I  V  A  A  D  N  D  D  L  L  A  W  K  G  W  V  E  S  R  L  R  Q  L  T  L  K  :  I  E  R  D  T  N  G  T  L  Q  C  H  P  Y  P  N  E  F  A  D  M  S  K  P  C  P  H  C  V  F  F  M  G  L  Q  R  Q  K  G  V  K  V  Q  E  G  Q  R  F  D  I  R  G  T  V  D  E  F  K  Q  E  V  N  M  Y  S  Y  W  R  P  G  M  D  I  Y  I  S  H  V  P  R  R  E  I  P  A  Y  V  F  P  D  G  Y  K  R  P  R  Q  S  R  N  T  T  Q  H  T  P  E  K  D  A  K  G  C  M  S  S  E  G  R  R  S  K  R  K  Q  E  T  H  T  V  D  V  E  S  D  K  L  P  K  R  A  S  I  S  P  Q  N  I  G  S  V  S  P  A  S  V  S  S  R  S  G  G  S  S  Q  I  I  I  P  E  E  S  L  Q  E  V  K  T  A  G  L  Q  N  Q  S  S  D  D  K  S  T  E  D  T  G  E  Q  K  P  C  I  S  E  *  N  E  N  S  S  L  I  V  *  S  S  P  H  Q  G  T  C  W  E  L  *  N  K  V  F  L  T  S  P  T  *  H  S  S  V  A  R  R  R  F  V  L  V  N  N  V  L  E  V  P  Q  L  R  R  L  Y  R  M  T  K  R  W  M  T  M  M  M  S  S  Q  L  D  *  P  G  I  Q  T  *  G  G  W  M  V  *  R  S  *  N  V  L  A  S  N  S  K  I  Q  N  L  L  R  S  S  G  E  F  L  I  H  E  *  W  P  M  A  V  R  D  W  K  L  *  V  V  A  G  *  Y  K  R  L  D  F  S  R  V  G  W  M  L  K  *  *  T  D  S  A  *  T  T  L  Q  I  Q  Q  Q  G  L  K  A  A  Q  H  N  Q  D  F  P  Q  T  T  K  I  N  S  K  R  E  *  N  *  K  A  A  P  E  S  S  S  I  A  I  E  V  R  *  V  S  K  F  E  R  E  R  T  W  M  V  K  R  L  N  L  *  M  A  I  L  A  L  C  L  E  G  C   </second_frame>
            <third_frame>   *  I  F  L  Q  S  N  L  L  *  L  S  Y  S  Y  *  I  E  K  F  L  F  F  S  F  Q  F  C  F  L  V  Q  Y  F  I  G  S  V  I  C  E  V  *  Q  L  L  C :   V  M  V  S  S  E  S  L  S  E  S  V  A  P  P  P  K  K  Y  G  V  T  K  P  L  S  L  A  G  P  T  E  T  D  L  Q  R  N  A  E  L  E  K  :  F  L  R  E  S  E  L  Y  E  S  E  E  E  T  A  R  R  E  E  V  L  R  R  L  D  Q  :  I  V  K  Q  W  V  K  Q  L  T  R  Q  R  G  Y  I  D  Q  M  V  E  D  A  N  A  I  I  V  T  F  G  S  Y  R  L  G  :  V  H  G  P  G  A  D  L  D  T  L  C  V  G  P  C  Y  V  N  R  E  :  E  D  F  F  I  L  L  H  D  I  L  A  E  M  E  E  V  C  E  L  Q  P  V  P  D  A  H  V  P  V  M  K  F  K  F  Q  G  I  S  I  D  L  L  Y  A  S  I  T  L  L  V  I  P  E  :  D  L  D  I  S  D  Q  S  V  L  C  N  V  D  G  P  T  V  R  S  L  N  G  C  R  V  A  D  R  I  L  K  L  V  P  N  A  K  V  T  I  S  V  P  P  P  L  K  *  L  I  I  S  M  F  T  *  N  F  C  S  T  S  V  Q  L  L  D  V  *  S  S  G  P  K  D  V  V  F  I  P  M :   L  L  D  F  L  V  G  *  I  G  L  F  W  L  L  A  F  A  S  F  T  Q  M  Q  S  L  V  C  L  F  L  G  S  S  V  F  I  H  N  G  V  G  Q  I  L  *  C  Y  A  Q  *  K  R  M  N  L  G  F  L  F  G  I  R  A  R  I  L  K  T  E  L  I  I  C  Q  S  S  L  L  P  T  L  A  *  T  L  A  I  T  S  H  Q  A  L  F  E  *  *  W  T  N  F  R  L  V  T  R  F  L  R :   M  W  S  *  I  N  H  S  G  L  L  F  L  S  I  I  F  S  L  R  R  T  K  T  I  S  R  L  K  S  *  Q  Q  I  M  M  I  C  *  L  G  K  A  G  W  N  H  G  F  D  N  S  R  *  R :   *  S  G  T  P  M  G  R  C  S  A  I  L  I  L  M  N  L  R  T  C  Q  S  H  A  R  I  V  F  F  S  W  V  C  R  G  K  R  V  S  K  Y  K  K  V  N  G  L  I  S  A  E  Q  S  M  S  L  S  K  R  *  T  C  T  L  I  G  D  R  A  W  I  S  I  S  R  M  F  L  G  G  K  F  L  L  M  S  F  L  M  G  I  R  D  H  V  N  L  E  I  Q  L  S  I  L  P  R  K  M  P  K  V  A  C  L  L  K  E  G  V  Q  R  G  S  R  K  P  I  Q  L  M  *  S  P  T  N  C  R  N  V  L  L  L  V  L  K  I  *  D  L  F  R  P  Q  V  F  L  V  G  Q  A  D  H  H  R  *  S  F  P  R  S  H  F  R  R  L  R  L  L  A  F  K  T  K  V  L  M  I  N  Q  Q  R  I  L  G  S  R  N  H  A  F  L  S  E  M  K  I  P  A  *  *  F  S  H  H  L  I  K  E  L  V  G  S  Y  K  T  R  F  S  *  P  V  Q  H  N  I  L  P  *  P  G  G  A  L  Y  L  *  T  M  F  *  R  C  P  S  F  A  D  Y  T  G  *  Q  K  G  G  *  R  *  *  *  A  A  S  S  I  D  Q  V  Y  K  L  E  V  G  G  W  C  E  G  V  E  M  C  S  H  Q  I  P  K  F  K  T  S  *  G  V  P  V  S  F  *  F  T  S  S  G  R  W  Q  *  E  T  G  S  F  E  S  L  Q  D  D  T  K  D  *  I  S  A  V  W  G  G  C  *  S  D  K  R  I  V  H  E  L  H  Y  K  S  S  S  R  G  *  R  Q  H  S  I  I  K  I  F  P  R  Q  Q  K  S  T  A  R  E  S  R  T  R  K  Q  H  Q  S  P  A  A  *  L  L  R  *  G  K  F  Q  N  L  K  E  R  E  H  G  W  *  K  D  *  I  C  K  W  L  Y  *  H  F  V  *  R  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62257" stop="62156"/>
                    <exon start="61978" stop="61649"/>
                    <exon start="61553" stop="61389"/>
                    <exon start="61240" stop="60629"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIDNFHVYLKLLQHFRTTLRCLKFWAKRRCVYSNVTGFLGGVNWALLVARICQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFLVWDPRKNPKDRTHHMPIITPAYPCMNSSYNVSPSTLRVMMDQFQIGNKISEDVELNKSQWPALFEHYFFFEAYKNYLQVEIVAADNDDLLAWKGWVESRLRQLTLKIERDTNGTLQCHPYPNEFADMSKPCPHCVFFMGLQRQKGVKVQEGQRFDIRGTVDEFKQEVNMYSYWRPGMDIYISHVPRREIPAYVFPDGYKRPRQSRNTTQHTPEKDAKGCMSSEGRRSKRKQETHTVDVESDKLPKRASISPQNIGSVSPASVSSRSGGSSQIIIPEESLQEVKTAGLQNQSSDDKSTEDTGEQKPCISE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66461" stop="66451"/>
                    <exon start="65473" stop="65344"/>
                    <exon start="65238" stop="65161"/>
                    <exon start="64211" stop="64104"/>
                    <exon start="63071" stop="63009"/>
                    <exon start="62893" stop="62732"/>
                    <exon start="62400" stop="62254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLCVMVSSESLSESVAPPPKKYGVTKPLSLAGPTETDLQRNAELEKFLRESELYESEEETARREEVLRRLDQIVKQWVKQLTRQRGYIDQMVEDANAIIVTFGSYRLGVHGPGADLDTLCVGPCYVNREEDFFILLHDILAEMEEVCELQPVPDAHVPVMKFKFQGISIDLLYASITLLVIPEDLDISDQSVLCNVDGPTVRSLNGCRVADRILKLVPNAKVTISVPPPLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60623" stop="60312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFQPDSLVITSSRNLLGVIKQGFLDQSNITFFRSQEALCTCEQCSRGAPASQTIQDDKKVDDDDDEQPARLTRYTNLRWVDGVKELKCARIKFQNSKPLEEFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63195" e_stop="63009"/>
            <exon e_start="62893" e_stop="62732"/>
            <exon e_start="62400" e_stop="62156"/>
            <exon e_start="61978" e_stop="61649"/>
            <exon e_start="61553" e_stop="61389"/>
            <exon e_start="61240" e_stop="59975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.730" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.800" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.912" e_score="0.997"/>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63195" e_stop="63009" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62893" e_stop="62732" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.730" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="62400" e_stop="62156" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="0.800" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62155" i_stop="61979" i_length="177"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="61978" e_stop="61649" e_length="330"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.912">
            <gDNA_intron_boundary i_start="61648" i_stop="61554" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="61553" e_stop="61389" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61388" i_stop="61241" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61240" e_stop="59975" e_length="1266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63195" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62156"/>
              <exon start="61978" stop="61936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61970" stop="61649"/>
              <exon start="61553" stop="61389"/>
              <exon start="61240" stop="61155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61676" stop="61649"/>
              <exon start="61553" stop="61389"/>
              <exon start="61240" stop="61006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61143" stop="60228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61143" stop="60229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60756" stop="59975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTCCCCAACTTAAATCTGGTTCACATGTAAGTTATTTAGAATCTGAATGGTTCATTCGTCCACTATCTTGAGGTTCTGGCTCAACAAATGCATAAGTTGGTAACACATACTCCTTGCAGGTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA : GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA : GATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGCTAAGGTAACCATAAGTGTTCCTCCTCCTCTTAAATGATTGATAATTTCCATGTTTACTTAAAACTTTTGCAGCACTTCCGTACAACTCTTAGATGTCTGAAGTTCTGGGCCAAAAGACGTTGTGTTTATTCCAAT : GTTACTGGATTTCTTGGTGGGGTGAATTGGGCTCTTTTGGTTGCTCGCATTTGCCAGTTTTACCCAAATGCAATCCCTAGTATGCTTGTTTCTAGGTTCTTCCGTGTTTATACACAATGGCGTTGGCCAAATCCTGTGATGTTATGCCCAATAGAAGAGGATGAACTTGGGTTTCTTGTTTGGGATCCGCGCAAGAATCCTAAAGACAGAACTCATCATATGCCAATCATCACTCCTGCCTACCCTTGCATGAACTCTAGCTATAACGTCTCACCAAGCACTCTTCGAGTAATGATGGACCAATTTCAGATTGGTAACAAGATTTCTGAG : GATGTGGAGTTGAATAAATCACAGTGGCCTGCTCTTTTTGAGCATTATTTTTTCTTTGAGGCGTACAAAAACTATCTCCAGGTTGAAATCGTAGCAGCAGATAATGATGATTTGCTAGCTTGGAAAGGCTGGGTGGAATCACGGCTTCGACAACTCACGCTAAAG : ATAGAGCGGGACACCAATGGGACGTTGCAGTGCCATCCTTATCCTAATGAATTTGCGGACATGTCAAAGCCATGCCCGCATTGTGTTTTTTTCATGGGTTTGCAGAGGCAAAAGGGTGTCAAAGTACAAGAAGGTCAACGGTTTGATATCCGCGGAACAGTCGATGAGTTTAAGCAAGAGGTAAACATGTACTCTTATTGGAGACCGGGCATGGATATCTATATCTCGCATGTTCCTAGGAGGGAAATTCCTGCTTATGTCTTTCCTGATGGGTATAAGAGACCACGTCAATCTAGAAATACAACTCAGCATACTCCCGAGAAAGATGCCAAAGGTTGCATGTCTTCTGAAGGAAGGCGTTCAAAGAGGAAGCAGGAAACCCATACAGTTGATGTAGAGTCCGACAAACTGCCGAAACGTGCTTCTATTAGTCCTCAAAATATAGGATCTGTTTCGCCCGCAAGTGTTTCTAGTCGGTCAGGCGGATCATCACAGATAATCATTCCCGAGGAGTCACTTCAGGAGGTTAAGACTGCTGGCCTTCAAAACCAAAGTTCTGATGATAAATCAACAGAGGATACTGGGGAGCAGAAACCATGCATTTCTGAGTGAAATGAAAATTCCAGCCTGATAGTTTAGTCATCACCTCATCAAGGAACTTGTTGGGAGTTATAAAACAAGGTTTTCTTGACCAGTCCAACATAACATTCTTCCGTAGCCAGGAGGCGCTTTGTACTTGTGAACAATGTTCTAGAGGTGCCCCAGCTTCGCAGACTATACAGGATGACAAAAAGGTGGATGACGATGATGATGAGCAGCCAGCTCGATTGACCAGGTATACAAACTTGAGGTGGGTGGATGGTGTGAAGGAGTTGAAATGTGCTCGCATCAAATTCCAAAATTCAAAACCTCTTGAGGAGTTCCGGTGAGTTTTTGATTCACGAGTAGTGGCCGATGGCAGTGAGAGACTGGAAGCTTTGAGTCGTTGCAGGATGATACAAAAGACTAGATTTCAGCCGTGTGGGGTGGATGTTGAAGTGATAAACGGATAGTGCATGAACTACACTACAAATCCAGCAGCAGGGGTTAAAGGCAGCACAGCATAATCAAGATTTTCCCCAGACAACAAAAATCAACAGCAAGAGAGAGTAGAACTAGAAAGCAGCACCAGAGTCCAGCAGCATAGCTATTGAGGTGAGGTAAGTTTCAAAATTTGAAAGAGAGAGAACATGGATGGTGAAAAGACTGAATTTGTAAATGGCTATA</gDNA_template>
            <first_frame> F  Y  S  P  T  *  I  W  F  T  C  K  L  F  R  I  *  M  V  H  S  S  T  I  L  R  F  W  L  N  K  C  I  S  W  *  H  I  L  L  A  G  S  W  T  R  S  *  P  G  H  I  V  C  W  S  L  L  C  Q  S  R   : R  R  F  L  Y  P  S  S  *  Y  F  S  *  N  G  R  S  L  *  T  S  T  S  S  *  C  S  C  P  C  Y  E  I  Q  I  S  R  N  F  N  *  S  S  L  C  K  Y  N  S  L  G  Y  S  *   : R  F  G  Y  L  R  P  I  C  T  L  *  C  G  W  T  N  C  S  K  S  K  W  L  S  S  C  *  S  N  T  E  T  S  S  Q  C  *  G  N  H  K  C  S  S  S  S  *  M  I  D  N  F  H  V  Y  L  K  L  L  Q  H  F  R  T  T  L  R  C  L  K  F  W  A  K  R  R  C  V  Y  S  N  :  V  T  G  F  L  G  G  V  N  W  A  L  L  V  A  R  I  C  Q  F  Y  P  N  A  I  P  S  M  L  V  S  R  F  F  R  V  Y  T  Q  W  R  W  P  N  P  V  M  L  C  P  I  E  E  D  E  L  G  F  L  V  W  D  P  R  K  N  P  K  D  R  T  H  H  M  P  I  I  T  P  A  Y  P  C  M  N  S  S  Y  N  V  S  P  S  T  L  R  V  M  M  D  Q  F  Q  I  G  N  K  I  S  E  :  D  V  E  L  N  K  S  Q  W  P  A  L  F  E  H  Y  F  F  F  E  A  Y  K  N  Y  L  Q  V  E  I  V  A  A  D  N  D  D  L  L  A  W  K  G  W  V  E  S  R  L  R  Q  L  T  L  K  :  I  E  R  D  T  N  G  T  L  Q  C  H  P  Y  P  N  E  F  A  D  M  S  K  P  C  P  H  C  V  F  F  M  G  L  Q  R  Q  K  G  V  K  V  Q  E  G  Q  R  F  D  I  R  G  T  V  D  E  F  K  Q  E  V  N  M  Y  S  Y  W  R  P  G  M  D  I  Y  I  S  H  V  P  R  R  E  I  P  A  Y  V  F  P  D  G  Y  K  R  P  R  Q  S  R  N  T  T  Q  H  T  P  E  K  D  A  K  G  C  M  S  S  E  G  R  R  S  K  R  K  Q  E  T  H  T  V  D  V  E  S  D  K  L  P  K  R  A  S  I  S  P  Q  N  I  G  S  V  S  P  A  S  V  S  S  R  S  G  G  S  S  Q  I  I  I  P  E  E  S  L  Q  E  V  K  T  A  G  L  Q  N  Q  S  S  D  D  K  S  T  E  D  T  G  E  Q  K  P  C  I  S  E  *  N  E  N  S  S  L  I  V  *  S  S  P  H  Q  G  T  C  W  E  L  *  N  K  V  F  L  T  S  P  T  *  H  S  S  V  A  R  R  R  F  V  L  V  N  N  V  L  E  V  P  Q  L  R  R  L  Y  R  M  T  K  R  W  M  T  M  M  M  S  S  Q  L  D  *  P  G  I  Q  T  *  G  G  W  M  V  *  R  S  *  N  V  L  A  S  N  S  K  I  Q  N  L  L  R  S  S  G  E  F  L  I  H  E  *  W  P  M  A  V  R  D  W  K  L  *  V  V  A  G  *  Y  K  R  L  D  F  S  R  V  G  W  M  L  K  *  *  T  D  S  A  *  T  T  L  Q  I  Q  Q  Q  G  L  K  A  A  Q  H  N  Q  D  F  P  Q  T  T  K  I  N  S  K  R  E  *  N  *  K  A  A  P  E  S  S  S  I  A  I  E  V  R  *  V  S  K  F  E  R  E  R  T  W  M  V  K  R  L  N  L  *  M  A  I </first_frame>
            <second_frame>  F  I  P  Q  L  K  S  G  S  H  V  S  Y  L  E  S  E  W  F  I  R  P  L  S  *  G  S  G  S  T  N  A  *  V  G  N  T  Y  S  L  Q  V  H  G  P  G  A  D  L  D  T  L  C  V  G  P  C  Y  V  N  R  E  :  E  D  F  F  I  L  L  H  D  I  L  A  E  M  E  E  V  C  E  L  Q  P  V  P  D  A  H  V  P  V  M  K  F  K  F  Q  G  I  S  I  D  L  L  Y  A  S  I  T  L  L  V  I  P  E  :  D  L  D  I  S  D  Q  S  V  L  C  N  V  D  G  P  T  V  R  S  L  N  G  C  R  V  A  D  R  I  L  K  L  V  P  N  A  K  V  T  I  S  V  P  P  P  L  K  *  L  I  I  S  M  F  T  *  N  F  C  S  T  S  V  Q  L  L  D  V  *  S  S  G  P  K  D  V  V  F  I  P  M :   L  L  D  F  L  V  G  *  I  G  L  F  W  L  L  A  F  A  S  F  T  Q  M  Q  S  L  V  C  L  F  L  G  S  S  V  F  I  H  N  G  V  G  Q  I  L  *  C  Y  A  Q  *  K  R  M  N  L  G  F  L  F  G  I  R  A  R  I  L  K  T  E  L  I  I  C  Q  S  S  L  L  P  T  L  A  *  T  L  A  I  T  S  H  Q  A  L  F  E  *  *  W  T  N  F  R  L  V  T  R  F  L  R :   M  W  S  *  I  N  H  S  G  L  L  F  L  S  I  I  F  S  L  R  R  T  K  T  I  S  R  L  K  S  *  Q  Q  I  M  M  I  C  *  L  G  K  A  G  W  N  H  G  F  D  N  S  R  *  R :   *  S  G  T  P  M  G  R  C  S  A  I  L  I  L  M  N  L  R  T  C  Q  S  H  A  R  I  V  F  F  S  W  V  C  R  G  K  R  V  S  K  Y  K  K  V  N  G  L  I  S  A  E  Q  S  M  S  L  S  K  R  *  T  C  T  L  I  G  D  R  A  W  I  S  I  S  R  M  F  L  G  G  K  F  L  L  M  S  F  L  M  G  I  R  D  H  V  N  L  E  I  Q  L  S  I  L  P  R  K  M  P  K  V  A  C  L  L  K  E  G  V  Q  R  G  S  R  K  P  I  Q  L  M  *  S  P  T  N  C  R  N  V  L  L  L  V  L  K  I  *  D  L  F  R  P  Q  V  F  L  V  G  Q  A  D  H  H  R  *  S  F  P  R  S  H  F  R  R  L  R  L  L  A  F  K  T  K  V  L  M  I  N  Q  Q  R  I  L  G  S  R  N  H  A  F  L  S  E  M  K  I  P  A  *  *  F  S  H  H  L  I  K  E  L  V  G  S  Y  K  T  R  F  S  *  P  V  Q  H  N  I  L  P  *  P  G  G  A  L  Y  L  *  T  M  F  *  R  C  P  S  F  A  D  Y  T  G  *  Q  K  G  G  *  R  *  *  *  A  A  S  S  I  D  Q  V  Y  K  L  E  V  G  G  W  C  E  G  V  E  M  C  S  H  Q  I  P  K  F  K  T  S  *  G  V  P  V  S  F  *  F  T  S  S  G  R  W  Q  *  E  T  G  S  F  E  S  L  Q  D  D  T  K  D  *  I  S  A  V  W  G  G  C  *  S  D  K  R  I  V  H  E  L  H  Y  K  S  S  S  R  G  *  R  Q  H  S  I  I  K  I  F  P  R  Q  Q  K  S  T  A  R  E  S  R  T  R  K  Q  H  Q  S  P  A  A  *  L  L  R  *  G  K  F  Q  N  L  K  E  R  E  H  G  W  *  K  D  *  I  C  K  W  L   </second_frame>
            <third_frame>   L  F  P  N  L  N  L  V  H  M  *  V  I  *  N  L  N  G  S  F  V  H  Y  L  E  V  L  A  Q  Q  M  H  K  L  V  T  H  T  P  C  R  F  M  D  Q  E  L  T  W  T  H  C  V  L  V  P  A  M  S  I  E  K :   K  I  S  L  S  F  F  M  I  F  *  L  K  W  K  K  F  V  N  F  N  Q  F  L  M  L  M  S  L  L  *  N  S  N  F  K  E  F  Q  L  I  F  F  M  Q  V  *  L  S  W  L  F  L  K :   I  W  I  S  Q  T  N  L  Y  S  V  M  W  M  D  Q  L  F  E  V  *  M  V  V  E  L  L  I  E  Y  *  N  *  F  P  M  L  R  *  P  *  V  F  L  L  L  L  N  D  *  *  F  P  C  L  L  K  T  F  A  A  L  P  Y  N  S  *  M  S  E  V  L  G  Q  K  T  L  C  L  F  Q   : C  Y  W  I  S  W  W  G  E  L  G  S  F  G  C  S  H  L  P  V  L  P  K  C  N  P  *  Y  A  C  F  *  V  L  P  C  L  Y  T  M  A  L  A  K  S  C  D  V  M  P  N  R  R  G  *  T  W  V  S  C  L  G  S  A  Q  E  S  *  R  Q  N  S  S  Y  A  N  H  H  S  C  L  P  L  H  E  L  *  L  *  R  L  T  K  H  S  S  S  N  D  G  P  I  S  D  W  *  Q  D  F  *   : G  C  G  V  E  *  I  T  V  A  C  S  F  *  A  L  F  F  L  *  G  V  Q  K  L  S  P  G  *  N  R  S  S  R  *  *  *  F  A  S  L  E  R  L  G  G  I  T  A  S  T  T  H  A  K   : D  R  A  G  H  Q  W  D  V  A  V  P  S  L  S  *  *  I  C  G  H  V  K  A  M  P  A  L  C  F  F  H  G  F  A  E  A  K  G  C  Q  S  T  R  R  S  T  V  *  Y  P  R  N  S  R  *  V  *  A  R  G  K  H  V  L  L  L  E  T  G  H  G  Y  L  Y  L  A  C  S  *  E  G  N  S  C  L  C  L  S  *  W  V  *  E  T  T  S  I  *  K  Y  N  S  A  Y  S  R  E  R  C  Q  R  L  H  V  F  *  R  K  A  F  K  E  E  A  G  N  P  Y  S  *  C  R  V  R  Q  T  A  E  T  C  F  Y  *  S  S  K  Y  R  I  C  F  A  R  K  C  F  *  S  V  R  R  I  I  T  D  N  H  S  R  G  V  T  S  G  G  *  D  C  W  P  S  K  P  K  F  *  *  *  I  N  R  G  Y  W  G  A  E  T  M  H  F  *  V  K  *  K  F  Q  P  D  S  L  V  I  T  S  S  R  N  L  L  G  V  I  K  Q  G  F  L  D  Q  S  N  I  T  F  F  R  S  Q  E  A  L  C  T  C  E  Q  C  S  R  G  A  P  A  S  Q  T  I  Q  D  D  K  K  V  D  D  D  D  D  E  Q  P  A  R  L  T  R  Y  T  N  L  R  W  V  D  G  V  K  E  L  K  C  A  R  I  K  F  Q  N  S  K  P  L  E  E  F  R  *  V  F  D  S  R  V  V  A  D  G  S  E  R  L  E  A  L  S  R  C  R  M  I  Q  K  T  R  F  Q  P  C  G  V  D  V  E  V  I  N  G  *  C  M  N  Y  T  T  N  P  A  A  G  V  K  G  S  T  A  *  S  R  F  S  P  D  N  K  N  Q  Q  Q  E  R  V  E  L  E  S  S  T  R  V  Q  Q  H  S  Y  *  G  E  V  S  F  K  I  *  K  R  E  N  M  D  G  E  K  T  E  F  V  N  G  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62257" stop="62156"/>
                    <exon start="61978" stop="61649"/>
                    <exon start="61553" stop="61389"/>
                    <exon start="61240" stop="60629"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIDNFHVYLKLLQHFRTTLRCLKFWAKRRCVYSNVTGFLGGVNWALLVARICQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFLVWDPRKNPKDRTHHMPIITPAYPCMNSSYNVSPSTLRVMMDQFQIGNKISEDVELNKSQWPALFEHYFFFEAYKNYLQVEIVAADNDDLLAWKGWVESRLRQLTLKIERDTNGTLQCHPYPNEFADMSKPCPHCVFFMGLQRQKGVKVQEGQRFDIRGTVDEFKQEVNMYSYWRPGMDIYISHVPRREIPAYVFPDGYKRPRQSRNTTQHTPEKDAKGCMSSEGRRSKRKQETHTVDVESDKLPKRASISPQNIGSVSPASVSSRSGGSSQIIIPEESLQEVKTAGLQNQSSDDKSTEDTGEQKPCISE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63095" stop="63009"/>
                    <exon start="62893" stop="62732"/>
                    <exon start="62400" stop="62254"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGNTYSLQVHGPGADLDTLCVGPCYVNREEDFFILLHDILAEMEEVCELQPVPDAHVPVMKFKFQGISIDLLYASITLLVIPEDLDISDQSVLCNVDGPTVRSLNGCRVADRILKLVPNAKVTISVPPPLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60623" stop="60312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFQPDSLVITSSRNLLGVIKQGFLDQSNITFFRSQEALCTCEQCSRGAPASQTIQDDKKVDDDDDEQPARLTRYTNLRWVDGVKELKCARIKFQNSKPLEEFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="65624" e_stop="65580"/>
            <exon e_start="65473" e_stop="65344"/>
            <exon e_start="65238" e_stop="65161"/>
            <exon e_start="64211" e_stop="64104"/>
            <exon e_start="63071" e_stop="63009"/>
            <exon e_start="62893" e_stop="62732"/>
            <exon e_start="62400" e_stop="62287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.946" e_score="0.844"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.949"/>
          <exon-intron don_prob="0.996" acc_prob="0.931" e_score="0.981"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="0.984"/>
          <exon-intron don_prob="0.730" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.844">
            <gDNA_exon_boundary e_start="65624" e_stop="65580" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.946">
            <gDNA_intron_boundary i_start="65579" i_stop="65474" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="65473" e_stop="65344" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="65238" e_stop="65161" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65160" i_stop="64212" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="64211" e_stop="64104" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.931">
            <gDNA_intron_boundary i_start="64103" i_stop="63072" i_length="1032"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="63071" e_stop="63009" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62893" e_stop="62732" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.730" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62731" i_stop="62401" i_length="331"/>
          </intron>
          <exon e_serial="7" e_score="0.955">
            <gDNA_exon_boundary e_start="62400" e_stop="62287" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65624" stop="65580"/>
              <exon start="65473" stop="65344"/>
              <exon start="65238" stop="65161"/>
              <exon start="64211" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64211" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64180" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62732"/>
              <exon start="62400" stop="62352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280666" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64180" stop="64104"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280796" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACAAACAACAGTAACAACATACTCGGTGAAATCCCGTGAAGTG : TGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAG : TTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAG : ATTGTAAAACAATGGGTGAAACAATTGACTCGCCAGAGAGGCTACATAGATCAAATGGTTGAGGATGCAAATGCTATCATAGTCACCTTTGGCTCTTATCGTCTAGGG : GTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA : GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATGTCCCTGTTATGAAATTCAAATTTCAAGGAATTTCAATTGATCTTCTTTATGCAAGTATAACTCTCTTGGTTATTCCTGAA : GATTTGGATATCTCAGACCAATCTGTACTCTGTAATGTGGATGGACCAACTGTTCGAAGTCTAAATGGTTGTCGAGTTGCTGATCGAATACTGAAACTAGTTCCCAATGCTAAG</gDNA_template>
            <first_frame> Q  Q  T  T  V  T  T  Y  S  V  K  S  R  E  V  :  C  D  G  E  F  G  E  L  K  *  V  C  C  T  T  T  K  E  I  W  C  H  K  A  I  I  S  C  W  T  N  *  D  R  S  S  K  K  C  R  T  G  K   : V  F  E  G  I  R  I  V  *  E  *  G  R  D  C  K  E  R  R  S  T  A  A  T  *  P   : D  C  K  T  M  G  E  T  I  D  S  P  E  R  L  H  R  S  N  G  *  G  C  K  C  Y  H  S  H  L  W  L  L  S  S  R   : G  S  W  T  R  S  *  P  G  H  I  V  C  W  S  L  L  C  Q  S  R   : R  R  F  L  Y  P  S  S  *  Y  F  S  *  N  G  R  S  L  *  T  S  T  S  S  *  C  S  C  P  C  Y  E  I  Q  I  S  R  N  F  N  *  S  S  L  C  K  Y  N  S  L  G  Y  S  *   : R  F  G  Y  L  R  P  I  C  T  L  *  C  G  W  T  N  C  S  K  S  K  W  L  S  S  C  *  S  N  T  E  T  S  S  Q  C  *  </first_frame>
            <second_frame>  N  K  Q  Q  *  Q  H  T  R  *  N  P  V  K  C :   V  M  V  S  S  E  S  L  S  E  S  V  A  P  P  P  K  K  Y  G  V  T  K  P  L  S  L  A  G  P  T  E  T  D  L  Q  R  N  A  E  L  E  K  :  F  L  R  E  S  E  L  Y  E  S  E  E  E  T  A  R  R  E  E  V  L  R  R  L  D  Q  :  I  V  K  Q  W  V  K  Q  L  T  R  Q  R  G  Y  I  D  Q  M  V  E  D  A  N  A  I  I  V  T  F  G  S  Y  R  L  G  :  V  H  G  P  G  A  D  L  D  T  L  C  V  G  P  C  Y  V  N  R  E  :  E  D  F  F  I  L  L  H  D  I  L  A  E  M  E  E  V  C  E  L  Q  P  V  P  D  A  H  V  P  V  M  K  F  K  F  Q  G  I  S  I  D  L  L  Y  A  S  I  T  L  L  V  I  P  E  :  D  L  D  I  S  D  Q  S  V  L  C  N  V  D  G  P  T  V  R  S  L  N  G  C  R  V  A  D  R  I  L  K  L  V  P  N  A  K </second_frame>
            <third_frame>   T  N  N  S  N  N  I  L  G  E  I  P  *  S   : V  *  W  *  V  R  R  A  *  V  S  L  L  H  H  H  Q  R  N  M  V  S  Q  S  H  Y  L  L  L  D  Q  L  R  Q  I  F  K  E  M  Q  N  W  K  S :   F  *  G  N  Q  N  C  M  R  V  R  K  R  L  Q  G  E  K  K  Y  C  G  D  L  T  R :   L  *  N  N  G  *  N  N  *  L  A  R  E  A  T  *  I  K  W  L  R  M  Q  M  L  S  *  S  P  L  A  L  I  V  *  G :   F  M  D  Q  E  L  T  W  T  H  C  V  L  V  P  A  M  S  I  E  K :   K  I  S  L  S  F  F  M  I  F  *  L  K  W  K  K  F  V  N  F  N  Q  F  L  M  L  M  S  L  L  *  N  S  N  F  K  E  F  Q  L  I  F  F  M  Q  V  *  L  S  W  L  F  L  K :   I  W  I  S  Q  T  N  L  Y  S  V  M  W  M  D  Q  L  F  E  V  *  M  V  V  E  L  L  I  E  Y  *  N  *  F  P  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65593" stop="65580"/>
                    <exon start="65473" stop="65344"/>
                    <exon start="65238" stop="65161"/>
                    <exon start="64211" stop="64104"/>
                    <exon start="63071" stop="63009"/>
                    <exon start="62893" stop="62732"/>
                    <exon start="62400" stop="62287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPVKCVMVSSESLSESVAPPPKKYGVTKPLSLAGPTETDLQRNAELEKFLRESELYESEEETARREEVLRRLDQIVKQWVKQLTRQRGYIDQMVEDANAIIVTFGSYRLGVHGPGADLDTLCVGPCYVNREEDFFILLHDILAEMEEVCELQPVPDAHVPVMKFKFQGISIDLLYASITLLVIPEDLDISDQSVLCNVDGPTVRSLNGCRVADRILKLVPNAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66580" e_stop="66451"/>
            <exon e_start="65473" e_stop="65344"/>
            <exon e_start="65238" e_stop="65161"/>
            <exon e_start="63071" e_stop="63009"/>
            <exon e_start="62893" e_stop="62812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.254" acc_prob="0.946" e_score="0.954"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.938"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="0.974"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="66580" e_stop="66451" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.254" acc_prob="0.946">
            <gDNA_intron_boundary i_start="66450" i_stop="65474" i_length="977"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="65473" e_stop="65344" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65343" i_stop="65239" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="65238" e_stop="65161" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="65160" i_stop="63072" i_length="2089"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63071" e_stop="63009" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="63008" i_stop="62894" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="62893" e_stop="62812" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66580" stop="66451"/>
              <exon start="65473" stop="65344"/>
              <exon start="65238" stop="65161"/>
              <exon start="63071" stop="63009"/>
              <exon start="62893" stop="62812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATCAAATTTATTATAGCTTTCATATTCATACTGAATTGAAAAATTCTTATTTTTCTCATTCCAATTTTGTTTTCTGGTTCAGTATTTCATCGGTTCAGTGATCTGTGAAGTTTAGCAGCTTTTATG : TGTGATGGTGAGTTCGGAGAGCTTAAGTGAGTCTGTTGCACCACCACCAAAGAAATATGGTGTCACAAAGCCATTATCTCTTGCTGGACCAACTGAGACAGATCTTCAAAGAAATGCAGAACTGGAAAAG : TTTTTGAGGGAATCAGAATTGTATGAGAGTGAGGAAGAGACTGCAAGGAGAGAAGAAGTACTGCGGCGACTTGACCAG : GTTCATGGACCAGGAGCTGACCTGGACACATTGTGTGTTGGTCCCTGCTATGTCAATCGAGAA : GAAGATTTCTTTATCCTTCTTCATGATATTTTAGCTGAAATGGAAGAAGTTTGTGAACTTCAACCAGTTCCTGATGCTCATG</gDNA_template>
            <first_frame> F  N  Q  I  Y  Y  S  F  H  I  H  T  E  L  K  N  S  Y  F  S  H  S  N  F  V  F  W  F  S  I  S  S  V  Q  *  S  V  K  F  S  S  F  Y   : V  *  W  *  V  R  R  A  *  V  S  L  L  H  H  H  Q  R  N  M  V  S  Q  S  H  Y  L  L  L  D  Q  L  R  Q  I  F  K  E  M  Q  N  W  K  S :   F  *  G  N  Q  N  C  M  R  V  R  K  R  L  Q  G  E  K  K  Y  C  G  D  L  T  R :   F  M  D  Q  E  L  T  W  T  H  C  V  L  V  P  A  M  S  I  E  K :   K  I  S  L  S  F  F  M  I  F  *  L  K  W  K  K  F  V  N  F  N  Q  F  L  M  L  M </first_frame>
            <second_frame>  S  I  K  F  I  I  A  F  I  F  I  L  N  *  K  I  L  I  F  L  I  P  I  L  F  S  G  S  V  F  H  R  F  S  D  L  *  S  L  A  A  F  M  :  C  D  G  E  F  G  E  L  K  *  V  C  C  T  T  T  K  E  I  W  C  H  K  A  I  I  S  C  W  T  N  *  D  R  S  S  K  K  C  R  T  G  K   : V  F  E  G  I  R  I  V  *  E  *  G  R  D  C  K  E  R  R  S  T  A  A  T  *  P   : G  S  W  T  R  S  *  P  G  H  I  V  C  W  S  L  L  C  Q  S  R   : R  R  F  L  Y  P  S  S  *  Y  F  S  *  N  G  R  S  L  *  T  S  T  S  S  *  C  S   </second_frame>
            <third_frame>   Q  S  N  L  L  *  L  S  Y  S  Y  *  I  E  K  F  L  F  F  S  F  Q  F  C  F  L  V  Q  Y  F  I  G  S  V  I  C  E  V  *  Q  L  L  C :   V  M  V  S  S  E  S  L  S  E  S  V  A  P  P  P  K  K  Y  G  V  T  K  P  L  S  L  A  G  P  T  E  T  D  L  Q  R  N  A  E  L  E  K  :  F  L  R  E  S  E  L  Y  E  S  E  E  E  T  A  R  R  E  E  V  L  R  R  L  D  Q  :  V  H  G  P  G  A  D  L  D  T  L  C  V  G  P  C  Y  V  N  R  E  :  E  D  F  F  I  L  L  H  D  I  L  A  E  M  E  E  V  C  E  L  Q  P  V  P  D  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66461" stop="66451"/>
                    <exon start="65473" stop="65344"/>
                    <exon start="65238" stop="65161"/>
                    <exon start="63071" stop="63009"/>
                    <exon start="62893" stop="62813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLCVMVSSESLSESVAPPPKKYGVTKPLSLAGPTETDLQRNAELEKFLRESELYESEEETARREEVLRRLDQVHGPGADLDTLCVGPCYVNREEDFFILLHDILAEMEEVCELQPVPDAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="68172" PGL_stop="77262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68172" e_stop="68570"/>
            <exon e_start="69605" e_stop="69651"/>
            <exon e_start="69770" e_stop="69809"/>
            <exon e_start="70990" e_stop="71052"/>
            <exon e_start="71154" e_stop="71291"/>
            <exon e_start="72514" e_stop="72672"/>
            <exon e_start="73136" e_stop="73189"/>
            <exon e_start="73782" e_stop="73850"/>
            <exon e_start="74107" e_stop="74236"/>
            <exon e_start="74603" e_stop="74871"/>
            <exon e_start="75561" e_stop="75609"/>
            <exon e_start="75683" e_stop="75837"/>
            <exon e_start="76755" e_stop="77262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68172" e_stop="68570" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69605" e_stop="69651" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69770" e_stop="69809" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70990" e_stop="71052" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.702">
            <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71154" e_stop="71291" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.790">
            <gDNA_intron_boundary i_start="71292" i_stop="72513" i_length="1222"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72514" e_stop="72672" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73136" e_stop="73189" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73782" e_stop="73850" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74107" e_stop="74236" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="74603" e_stop="74871" e_length="269"/>
          </exon>
          <intron i_serial="10" don_prob="0.758" acc_prob="0.930">
            <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75609" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="75683" e_stop="75837" e_length="155"/>
          </exon>
          <intron i_serial="12" don_prob="0.938" acc_prob="0.985">
            <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917"/>
          </intron>
          <exon e_serial="13" e_score="0.988">
            <gDNA_exon_boundary e_start="76755" e_stop="77262" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68172" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68263" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68319" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68325" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73158" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="76927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="76857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74799" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74802" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74856" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75690" stop="75837"/>
              <exon start="76755" stop="77190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75697" stop="75837"/>
              <exon start="76755" stop="77254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416223" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75777" stop="75837"/>
              <exon start="76755" stop="77253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415402" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAAAAATATCATTTTTTTTTCACTTTCCCCTTTGAAAATTCTGACTAATTTTTGCTTCTTTGATTCCTCTAATTCACATGCTGTACTGTCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT : ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA : GCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAG : GTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAG : GTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGAT : GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG : GTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAG : GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT : GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG : GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG : GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG : ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT : CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTAGAAACAGATATATTTCTGCCTAATTCATCTAAACTCCTAATTTCTGGAAGTGAAATTAGACAGCTTTTTATAAAATATTTTGTAATAAATTTAAACAGTGAGAACATTTGCTATGCATATAAATGATGAACTGTGTTGCTGG</gDNA_template>
            <first_frame> S  K  K  Y  H  F  F  F  T  F  P  F  E  N  S  D  *  F  L  L  L  *  F  L  *  F  T  C  C  T  V  T  L  V  F  V  I  T  T  I  F  Q  F  L  L  S  Q  E  P  K  I  Q  I  S  L  L  W  G  *  L  K  F  N  I  Y  I  C  V  F  L  V  F  *  F  C  F  K  I  P  F  *  I  S  I  E  K  V  G  I  F  F  V  F  F  V  Y  L  G  K  M  G  T  E  S  N  Y  Q  M  K  V  V  K  G  D  H  G  Y  V  L  E  D  V  P  H  L  T  D  Y  I  P  D  L  P  :  T  H  D  N  P  L  R  S  N  P  A  Y  S  V  V  K :   Q  Y  F  V  D  M  D  D  T  V  P  Q  K  :  V  V  V  H  K  D  S  P  R  G  V  H  F  R  R  A  G  P  R  Q  K  :  V  Y  F  N  S  D  D  V  R  A  C  I  V  T  C  G  G  L  C  P  G  L  N  T  V  I  R  E  I  V  H  S  L  D  Y  M  Y  G  V  S  K  V  F  G  I  D  :  G  G  Y  R  G  F  Y  S  K  N  I  I  N  L  T  P  K  T  V  N  D  I  H  K  R  G  G  T  I  L  G  S  S  R  G  G  H  D  T  T  K  I  V  D  S  I  Q  D  R  G  I  N  Q  :  V  Y  I  I  G  G  D  G  T  Q  K  G  A  A  V  I  Y  E  :  E  I  R  R  R  D  L  K  V  I  V  A  G  I  P  K  T  I  D  N  D  I  P  :  V  I  D  K  S  F  G  F  D  T  A  V  E  E  A  Q  R  A  I  N  A  A  H  V  E  A  E  S  A  E  N  G  I  G  V  V  K  L  M  G  R  Y  S   : G  F  I  A  M  Y  A  T  L  A  S  R  D  V  D  L  C  L  I  P  E  S  P  F  Y  L  E  G  D  G  G  L  F  E  Y  I  E  K  R  L  K  E  N  G  H  M  V  I  V  I  A  E  G  A  G  Q  E  L  L  A  E  E  N  A  H  A  K  N  E  Q  D  A  S  G  N  K  L  L  Q  D  V  G  L  W  I  S  Q  K  I  R  :  D  H  F  A  K  K  T  K  M  P  I  T  L  K  Y  I   : D  P  T  Y  M  I  R  A  V  P  S  N  A  S  D  N  V  Y  C  T  L  L  A  Q  S  C  V  H  G  A  M  A  G  Y  T  G  F  T  S  G  L  V  N  G  R  Q  T  Y  I  P  F  N  :  R  I  T  E  K  Q  N  M  V  V  I  T  D  R  M  W  A  R  L  L  S  S  T  N  Q  P  S  F  L  R  V  K  D  I  E  E  I  K  K  E  E  Q  P  Q  T  Q  L  L  D  G  D  N  N  V  H  E  N  S  G  H  *  Y  S  N  K  K  L  G  A  T  H  *  S  N  F  V  V  I  I  C  L  C  S  G  S  L  V  V  F  E  A  L  L  L  T  I  V  L  C  L  I  K  Q  S  *  E  L  N  C  *  R  F  W  D  L  L  H  Q  M  L  A  V  E  T  D  I  F  L  P  N  S  S  K  L  L  I  S  G  S  E  I  R  Q  L  F  I  K  Y  F  V  I  N  L  N  S  E  N  I  C  Y  A  Y  K  *  *  T  V  L  L  </first_frame>
            <second_frame>  V  K  N  I  I  F  F  S  L  S  P  L  K  I  L  T  N  F  C  F  F  D  S  S  N  S  H  A  V  L  S  R  L  F  L  L  L  L  Q  Y  S  S  F  F  S  H  K  N  Q  K  Y  K  S  L  F  C  G  V  D  S  N  L  T  Y  I  Y  V  F  F  W  F  S  D  S  V  L  R  Y  P  F  E  F  P  L  R  K  L  E  S  F  L  Y  F  L  C  I  W  G  R  W  V  L  R  V  I  T  R  *  R  W  *  K  E  I  M  V  M  F  L  K  M  F  L  I  *  L  I  I  S  L  I  F  L :   L  M  T  I  H  C  G  P  I  L  H  I  Q  L  *   : S  S  T  L  L  T  W  M  I  L  S  R  K  R :   L  L  F  T  R  T  V  P  E  G  C  I  S  D  V  L  V  H  V  R  R :   C  I  S  I  R  M  M  F  V  L  V  L  *  L  V  V  V  C  A  L  G  *  T  Q  *  S  E  R  L  Y  I  A  L  I  I  C  M  G  S  A  K  S  L  G  S  M :   E  A  T  G  V  S  I  P  R  I  S  S  I  *  H  Q  R  L  L  M  T  F  I  N  V  V  V  Q  F  L  D  H  H  E  E  A  M  I  P  Q  R  L  L  T  A  Y  R  T  V  E  L  I  R :   F  I  *  L  V  V  M  E  L  R  K  E  Q  L  *  Y  T  R :   K  S  G  G  V  I  S  K  *  L  L  L  E  S  Q  R  Q  L  I  M  I  S  L :   L  S  T  S  H  L  V  L  I  L  L  *  R  R  L  N  V  P  *  M  Q  L  M  L  K  L  K  V  L  K  M  V  L  V  W  *  S  *  W  D  A  I  V  :  D  S  S  Q  C  M  P  L  W  R  A  E  M  L  I  S  V  *  F  Q  S  L  H  F  I  L  K  E  M  A  D  S  S  N  T  L  K  N  G  S  K  K  M  G  T  W  L  L  *  *  L  K  E  Q  G  K  N  F  L  Q  K  R  M  R  M  P  K  T  S  K  M  L  R  V  T  S  F  F  R  M  L  V  C  G  F  P  R  K  S  G :   I  I  L  L  K  K  L  R  C  P  L  L  L  N  I  *  :  I  R  L  T  *  F  V  L  F  Q  V  M  P  L  I  M  Y  I  A  L  F  L  L  K  V  V  F  M  E  Q  W  Q  D  T  Q  V  S  P  Q  D  L  S  M  V  A  R  L  I  F  H  S  I :   V  L  P  R  N  K  I  W  W  L  *  L  T  G  C  G  H  V  F  F  R  Q  P  I  S  Q  A  S  C  A  *  K  T  L  K  R  L  K  R  R  S  S  R  K  L  N  Y  W  T  G  I  T  M  Y  M  R  T  Q  V  T  D  T  V  I  K  N  L  A  R  H  T  E  V  T  L  L  *  S  F  A  C  A  V  V  L  L  L  S  L  K  L  C  C  L  P  L  Y  C  A  L  *  N  S  L  R  N  L  I  V  E  G  F  G  I  F  C  I  R  C  W  Q  *  K  Q  I  Y  F  C  L  I  H  L  N  S  *  F  L  E  V  K  L  D  S  F  L  *  N  I  L  *  *  I  *  T  V  R  T  F  A  M  H  I  N  D  E  L  C  C  W </second_frame>
            <third_frame>   *  K  I  S  F  F  F  H  F  P  L  *  K  F  *  L  I  F  A  S  L  I  P  L  I  H  M  L  Y  C  H  A  C  F  C  Y  Y  Y  N  I  P  V  S  S  L  T  R  T  K  N  T  N  L  S  F  V  G  L  T  Q  I  *  H  I  Y  M  C  F  F  G  F  L  I  L  F  *  D  T  L  L  N  F  H  *  E  S  W  N  L  F  C  I  F  C  V  F  G  E  D  G  Y  *  E  *  L  P  D  E  G  G  E  R  R  S  W  L  C  S  *  R  C  S  S  F  D  *  L  Y  P  *  S  S   : Y  S  *  Q  S  I  A  V  Q  S  C  I  F  S  C  E  :  A  V  L  C  *  H  G  *  Y  C  P  A  K   : G  C  C  S  Q  G  Q  S  Q  R  G  A  F  P  T  C  W  S  T  S  E   : G  V  F  Q  F  G  *  C  S  C  L  Y  C  N  L  W  W  F  V  P  W  A  K  H  S  D  Q  R  D  C  T  *  P  *  L  Y  V  W  G  Q  Q  S  L  W  D  R   : W  R  L  Q  G  F  L  F  Q  E  Y  H  Q  F  D  T  K  D  C  *  *  H  S  *  T  W  W  Y  N  S  W  I  I  T  R  R  P  *  Y  H  K  D  C  *  Q  H  T  G  P  W  N  *  S   : G  L  Y  N  W  W  *  W  N  S  E  R  S  S  C  N  I  R   : G  N  Q  A  A  *  S  Q  S  N  C  C  W  N  P  K  D  N  *  *  *  Y  P   : C  Y  R  Q  V  I  W  F  *  Y  C  C  R  G  G  S  T  C  H  K  C  S  S  C  *  S  *  K  C  *  K  W  Y  W  C  G  E  A  N  G  T  L  *  W :   I  H  R  N  V  C  H  F  G  E  Q  R  C  *  S  L  S  N  S  R  V  S  I  L  S  *  R  R  W  R  T  L  R  I  H  *  K  T  A  Q  R  K  W  A  H  G  Y  C  D  S  *  R  S  R  A  R  T  S  C  R  R  E  C  A  C  Q  K  R  A  R  C  F  G  *  Q  A  S  S  G  C  W  F  V  D  F  P  E  N  Q   : G  S  F  C  *  K  N  *  D  A  H  Y  S  *  I  Y  R :   S  D  L  H  D  S  C  C  S  K  *  C  L  *  *  C  I  L  H  S  S  C  S  K  L  C  S  W  S  N  G  R  I  H  R  F  H  L  R  T  C  Q  W  S  P  D  L  Y  S  I  Q   : S  Y  Y  R  E  T  K  Y  G  G  Y  N  *  Q  D  V  G  T  S  S  F  V  N  Q  S  A  K  L  L  A  R  E  R  H  *  R  D  *  K  G  G  A  A  A  N  S  I  I  G  R  G  *  Q  C  T  *  E  L  R  S  L  I  Q  *  *  K  T  W  R  D  T  L  K  *  L  C  C  N  H  L  P  V  Q  W  F  S  C  C  L  *  S  F  A  A  Y  H  C  I  V  P  Y  K  T  V  L  G  T  *  L  L  K  V  L  G  S  S  A  S  D  V  G  S  R  N  R  Y  I  S  A  *  F  I  *  T  P  N  F  W  K  *  N  *  T  A  F  Y  K  I  F  C  N  K  F  K  Q  *  E  H  L  L  C  I  *  M  M  N  C  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68415" stop="68570"/>
                    <exon start="69605" stop="69651"/>
                    <exon start="69770" stop="69809"/>
                    <exon start="70990" stop="71052"/>
                    <exon start="71154" stop="71291"/>
                    <exon start="72514" stop="72672"/>
                    <exon start="73136" stop="73189"/>
                    <exon start="73782" stop="73850"/>
                    <exon start="74107" stop="74236"/>
                    <exon start="74603" stop="74871"/>
                    <exon start="75561" stop="75609"/>
                    <exon start="75683" stop="75837"/>
                    <exon start="76755" stop="76937"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISIEKVGIFFVFFVYLGKMGTESNYQMKVVKGDHGYVLEDVPHLTDYIPDLPTHDNPLRSNPAYSVVKQYFVDMDDTVPQKVVVHKDSPRGVHFRRAGPRQKVYFNSDDVRACIVTCGGLCPGLNTVIREIVHSLDYMYGVSKVFGIDGGYRGFYSKNIINLTPKTVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRRRDLKVIVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESAENGIGVVKLMGRYSGFIAMYATLASRDVDLCLIPESPFYLEGDGGLFEYIEKRLKENGHMVIVIAEGAGQELLAEENAHAKNEQDASGNKLLQDVGLWISQKIRDHFAKKTKMPITLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGFTSGLVNGRQTYIPFNRITEKQNMVVITDRMWARLLSSTNQPSFLRVKDIEEIKKEEQPQTQLLDGDNNVHENSGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68172" e_stop="68570"/>
            <exon e_start="69605" e_stop="69651"/>
            <exon e_start="69770" e_stop="69809"/>
            <exon e_start="70990" e_stop="71052"/>
            <exon e_start="71154" e_stop="71291"/>
            <exon e_start="72514" e_stop="72672"/>
            <exon e_start="73136" e_stop="73189"/>
            <exon e_start="73782" e_stop="73850"/>
            <exon e_start="74107" e_stop="74236"/>
            <exon e_start="74603" e_stop="74871"/>
            <exon e_start="75561" e_stop="75609"/>
            <exon e_start="75683" e_stop="75837"/>
            <exon e_start="76755" e_stop="77012"/>
            <exon e_start="77109" e_stop="77114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.786" e_score="0.992"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68172" e_stop="68570" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69605" e_stop="69651" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69770" e_stop="69809" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70990" e_stop="71052" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.702">
            <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71154" e_stop="71291" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.790">
            <gDNA_intron_boundary i_start="71292" i_stop="72513" i_length="1222"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72514" e_stop="72672" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73136" e_stop="73189" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73782" e_stop="73850" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74107" e_stop="74236" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="74603" e_stop="74871" e_length="269"/>
          </exon>
          <intron i_serial="10" don_prob="0.758" acc_prob="0.930">
            <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75609" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="75683" e_stop="75837" e_length="155"/>
          </exon>
          <intron i_serial="12" don_prob="0.938" acc_prob="0.985">
            <gDNA_intron_boundary i_start="75838" i_stop="76754" i_length="917"/>
          </intron>
          <exon e_serial="13" e_score="0.992">
            <gDNA_exon_boundary e_start="76755" e_stop="77012" e_length="258"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.786">
            <gDNA_intron_boundary i_start="77013" i_stop="77108" i_length="96"/>
          </intron>
          <exon e_serial="14" e_score="0.833">
            <gDNA_exon_boundary e_start="77109" e_stop="77114" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68172" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68263" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68319" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68325" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73158" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="76927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="76857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74799" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77012"/>
              <exon start="77109" stop="77114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427730" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74802" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76755" stop="77011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAAAAATATCATTTTTTTTTCACTTTCCCCTTTGAAAATTCTGACTAATTTTTGCTTCTTTGATTCCTCTAATTCACATGCTGTACTGTCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT : ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA : GCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAG : GTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAG : GTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGAT : GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG : GTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAG : GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT : GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG : GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG : GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG : ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT : CGTATTACCGAGAAACAAAATATGGTGGTTATAACTGACAGGATGTGGGCACGTCTTCTTTCGTCAACCAATCAGCCAAGCTTCTTGCGCGTGAAAGACATTGAAGAGATTAAAAAGGAGGAGCAGCCGCAAACTCAATTATTGGACGGGGATAACAATGTACATGAGAACTCAGGTCACTGATACAGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTT : ATGTTG</gDNA_template>
            <first_frame> S  K  K  Y  H  F  F  F  T  F  P  F  E  N  S  D  *  F  L  L  L  *  F  L  *  F  T  C  C  T  V  T  L  V  F  V  I  T  T  I  F  Q  F  L  L  S  Q  E  P  K  I  Q  I  S  L  L  W  G  *  L  K  F  N  I  Y  I  C  V  F  L  V  F  *  F  C  F  K  I  P  F  *  I  S  I  E  K  V  G  I  F  F  V  F  F  V  Y  L  G  K  M  G  T  E  S  N  Y  Q  M  K  V  V  K  G  D  H  G  Y  V  L  E  D  V  P  H  L  T  D  Y  I  P  D  L  P  :  T  H  D  N  P  L  R  S  N  P  A  Y  S  V  V  K :   Q  Y  F  V  D  M  D  D  T  V  P  Q  K  :  V  V  V  H  K  D  S  P  R  G  V  H  F  R  R  A  G  P  R  Q  K  :  V  Y  F  N  S  D  D  V  R  A  C  I  V  T  C  G  G  L  C  P  G  L  N  T  V  I  R  E  I  V  H  S  L  D  Y  M  Y  G  V  S  K  V  F  G  I  D  :  G  G  Y  R  G  F  Y  S  K  N  I  I  N  L  T  P  K  T  V  N  D  I  H  K  R  G  G  T  I  L  G  S  S  R  G  G  H  D  T  T  K  I  V  D  S  I  Q  D  R  G  I  N  Q  :  V  Y  I  I  G  G  D  G  T  Q  K  G  A  A  V  I  Y  E  :  E  I  R  R  R  D  L  K  V  I  V  A  G  I  P  K  T  I  D  N  D  I  P  :  V  I  D  K  S  F  G  F  D  T  A  V  E  E  A  Q  R  A  I  N  A  A  H  V  E  A  E  S  A  E  N  G  I  G  V  V  K  L  M  G  R  Y  S   : G  F  I  A  M  Y  A  T  L  A  S  R  D  V  D  L  C  L  I  P  E  S  P  F  Y  L  E  G  D  G  G  L  F  E  Y  I  E  K  R  L  K  E  N  G  H  M  V  I  V  I  A  E  G  A  G  Q  E  L  L  A  E  E  N  A  H  A  K  N  E  Q  D  A  S  G  N  K  L  L  Q  D  V  G  L  W  I  S  Q  K  I  R  :  D  H  F  A  K  K  T  K  M  P  I  T  L  K  Y  I   : D  P  T  Y  M  I  R  A  V  P  S  N  A  S  D  N  V  Y  C  T  L  L  A  Q  S  C  V  H  G  A  M  A  G  Y  T  G  F  T  S  G  L  V  N  G  R  Q  T  Y  I  P  F  N  :  R  I  T  E  K  Q  N  M  V  V  I  T  D  R  M  W  A  R  L  L  S  S  T  N  Q  P  S  F  L  R  V  K  D  I  E  E  I  K  K  E  E  Q  P  Q  T  Q  L  L  D  G  D  N  N  V  H  E  N  S  G  H  *  Y  S  N  K  K  L  G  A  T  H  *  S  N  F  V  V  I  I  C  L  C  S  G  S  L  :  M  L </first_frame>
            <second_frame>  V  K  N  I  I  F  F  S  L  S  P  L  K  I  L  T  N  F  C  F  F  D  S  S  N  S  H  A  V  L  S  R  L  F  L  L  L  L  Q  Y  S  S  F  F  S  H  K  N  Q  K  Y  K  S  L  F  C  G  V  D  S  N  L  T  Y  I  Y  V  F  F  W  F  S  D  S  V  L  R  Y  P  F  E  F  P  L  R  K  L  E  S  F  L  Y  F  L  C  I  W  G  R  W  V  L  R  V  I  T  R  *  R  W  *  K  E  I  M  V  M  F  L  K  M  F  L  I  *  L  I  I  S  L  I  F  L :   L  M  T  I  H  C  G  P  I  L  H  I  Q  L  *   : S  S  T  L  L  T  W  M  I  L  S  R  K  R :   L  L  F  T  R  T  V  P  E  G  C  I  S  D  V  L  V  H  V  R  R :   C  I  S  I  R  M  M  F  V  L  V  L  *  L  V  V  V  C  A  L  G  *  T  Q  *  S  E  R  L  Y  I  A  L  I  I  C  M  G  S  A  K  S  L  G  S  M :   E  A  T  G  V  S  I  P  R  I  S  S  I  *  H  Q  R  L  L  M  T  F  I  N  V  V  V  Q  F  L  D  H  H  E  E  A  M  I  P  Q  R  L  L  T  A  Y  R  T  V  E  L  I  R :   F  I  *  L  V  V  M  E  L  R  K  E  Q  L  *  Y  T  R :   K  S  G  G  V  I  S  K  *  L  L  L  E  S  Q  R  Q  L  I  M  I  S  L :   L  S  T  S  H  L  V  L  I  L  L  *  R  R  L  N  V  P  *  M  Q  L  M  L  K  L  K  V  L  K  M  V  L  V  W  *  S  *  W  D  A  I  V  :  D  S  S  Q  C  M  P  L  W  R  A  E  M  L  I  S  V  *  F  Q  S  L  H  F  I  L  K  E  M  A  D  S  S  N  T  L  K  N  G  S  K  K  M  G  T  W  L  L  *  *  L  K  E  Q  G  K  N  F  L  Q  K  R  M  R  M  P  K  T  S  K  M  L  R  V  T  S  F  F  R  M  L  V  C  G  F  P  R  K  S  G :   I  I  L  L  K  K  L  R  C  P  L  L  L  N  I  *  :  I  R  L  T  *  F  V  L  F  Q  V  M  P  L  I  M  Y  I  A  L  F  L  L  K  V  V  F  M  E  Q  W  Q  D  T  Q  V  S  P  Q  D  L  S  M  V  A  R  L  I  F  H  S  I :   V  L  P  R  N  K  I  W  W  L  *  L  T  G  C  G  H  V  F  F  R  Q  P  I  S  Q  A  S  C  A  *  K  T  L  K  R  L  K  R  R  S  S  R  K  L  N  Y  W  T  G  I  T  M  Y  M  R  T  Q  V  T  D  T  V  I  K  N  L  A  R  H  T  E  V  T  L  L  *  S  F  A  C  A  V  V  L  L :   C   </second_frame>
            <third_frame>   *  K  I  S  F  F  F  H  F  P  L  *  K  F  *  L  I  F  A  S  L  I  P  L  I  H  M  L  Y  C  H  A  C  F  C  Y  Y  Y  N  I  P  V  S  S  L  T  R  T  K  N  T  N  L  S  F  V  G  L  T  Q  I  *  H  I  Y  M  C  F  F  G  F  L  I  L  F  *  D  T  L  L  N  F  H  *  E  S  W  N  L  F  C  I  F  C  V  F  G  E  D  G  Y  *  E  *  L  P  D  E  G  G  E  R  R  S  W  L  C  S  *  R  C  S  S  F  D  *  L  Y  P  *  S  S   : Y  S  *  Q  S  I  A  V  Q  S  C  I  F  S  C  E  :  A  V  L  C  *  H  G  *  Y  C  P  A  K   : G  C  C  S  Q  G  Q  S  Q  R  G  A  F  P  T  C  W  S  T  S  E   : G  V  F  Q  F  G  *  C  S  C  L  Y  C  N  L  W  W  F  V  P  W  A  K  H  S  D  Q  R  D  C  T  *  P  *  L  Y  V  W  G  Q  Q  S  L  W  D  R   : W  R  L  Q  G  F  L  F  Q  E  Y  H  Q  F  D  T  K  D  C  *  *  H  S  *  T  W  W  Y  N  S  W  I  I  T  R  R  P  *  Y  H  K  D  C  *  Q  H  T  G  P  W  N  *  S   : G  L  Y  N  W  W  *  W  N  S  E  R  S  S  C  N  I  R   : G  N  Q  A  A  *  S  Q  S  N  C  C  W  N  P  K  D  N  *  *  *  Y  P   : C  Y  R  Q  V  I  W  F  *  Y  C  C  R  G  G  S  T  C  H  K  C  S  S  C  *  S  *  K  C  *  K  W  Y  W  C  G  E  A  N  G  T  L  *  W :   I  H  R  N  V  C  H  F  G  E  Q  R  C  *  S  L  S  N  S  R  V  S  I  L  S  *  R  R  W  R  T  L  R  I  H  *  K  T  A  Q  R  K  W  A  H  G  Y  C  D  S  *  R  S  R  A  R  T  S  C  R  R  E  C  A  C  Q  K  R  A  R  C  F  G  *  Q  A  S  S  G  C  W  F  V  D  F  P  E  N  Q   : G  S  F  C  *  K  N  *  D  A  H  Y  S  *  I  Y  R :   S  D  L  H  D  S  C  C  S  K  *  C  L  *  *  C  I  L  H  S  S  C  S  K  L  C  S  W  S  N  G  R  I  H  R  F  H  L  R  T  C  Q  W  S  P  D  L  Y  S  I  Q   : S  Y  Y  R  E  T  K  Y  G  G  Y  N  *  Q  D  V  G  T  S  S  F  V  N  Q  S  A  K  L  L  A  R  E  R  H  *  R  D  *  K  G  G  A  A  A  N  S  I  I  G  R  G  *  Q  C  T  *  E  L  R  S  L  I  Q  *  *  K  T  W  R  D  T  L  K  *  L  C  C  N  H  L  P  V  Q  W  F  S   : Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68415" stop="68570"/>
                    <exon start="69605" stop="69651"/>
                    <exon start="69770" stop="69809"/>
                    <exon start="70990" stop="71052"/>
                    <exon start="71154" stop="71291"/>
                    <exon start="72514" stop="72672"/>
                    <exon start="73136" stop="73189"/>
                    <exon start="73782" stop="73850"/>
                    <exon start="74107" stop="74236"/>
                    <exon start="74603" stop="74871"/>
                    <exon start="75561" stop="75609"/>
                    <exon start="75683" stop="75837"/>
                    <exon start="76755" stop="76937"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISIEKVGIFFVFFVYLGKMGTESNYQMKVVKGDHGYVLEDVPHLTDYIPDLPTHDNPLRSNPAYSVVKQYFVDMDDTVPQKVVVHKDSPRGVHFRRAGPRQKVYFNSDDVRACIVTCGGLCPGLNTVIREIVHSLDYMYGVSKVFGIDGGYRGFYSKNIINLTPKTVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRRRDLKVIVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESAENGIGVVKLMGRYSGFIAMYATLASRDVDLCLIPESPFYLEGDGGLFEYIEKRLKENGHMVIVIAEGAGQELLAEENAHAKNEQDASGNKLLQDVGLWISQKIRDHFAKKTKMPITLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGFTSGLVNGRQTYIPFNRITEKQNMVVITDRMWARLLSSTNQPSFLRVKDIEEIKKEEQPQTQLLDGDNNVHENSGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68172" e_stop="68570"/>
            <exon e_start="69605" e_stop="69651"/>
            <exon e_start="69770" e_stop="69809"/>
            <exon e_start="70990" e_stop="71052"/>
            <exon e_start="71154" e_stop="71291"/>
            <exon e_start="72514" e_stop="72672"/>
            <exon e_start="73136" e_stop="73189"/>
            <exon e_start="73782" e_stop="73850"/>
            <exon e_start="74107" e_stop="74236"/>
            <exon e_start="74603" e_stop="74871"/>
            <exon e_start="75561" e_stop="75609"/>
            <exon e_start="75683" e_stop="75837"/>
            <exon e_start="76941" e_stop="77120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68172" e_stop="68570" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69605" e_stop="69651" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69770" e_stop="69809" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70990" e_stop="71052" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.702">
            <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71154" e_stop="71291" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.790">
            <gDNA_intron_boundary i_start="71292" i_stop="72513" i_length="1222"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72514" e_stop="72672" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73136" e_stop="73189" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73782" e_stop="73850" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74107" e_stop="74236" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="74603" e_stop="74871" e_length="269"/>
          </exon>
          <intron i_serial="10" don_prob="0.758" acc_prob="0.930">
            <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="75561" e_stop="75609" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="75610" i_stop="75682" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="75683" e_stop="75837" e_length="155"/>
          </exon>
          <intron i_serial="12" don_prob="0.938" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75838" i_stop="76940" i_length="1103"/>
          </intron>
          <exon e_serial="13" e_score="0.989">
            <gDNA_exon_boundary e_start="76941" e_stop="77120" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68172" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68263" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68319" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68325" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73158" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="75609"/>
              <exon start="75683" stop="75742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75603" stop="75609"/>
              <exon start="75683" stop="75837"/>
              <exon start="76941" stop="77120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAAAAATATCATTTTTTTTTCACTTTCCCCTTTGAAAATTCTGACTAATTTTTGCTTCTTTGATTCCTCTAATTCACATGCTGTACTGTCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT : ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA : GCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAG : GTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAG : GTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGAT : GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG : GTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAG : GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT : GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG : GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG : GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAG : ATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAAT : AGTAATAAAAAACTTGGCGCGACACACTGAAGTAACTTTGTTGTAATCATTTGCCTGTGCAGTGGTTCTCTTGTTGTCTTTGAAGCTTTGCTGCTTACCATTGTATTGTGCCTTATAAAACAGTCTTAGGAACTTAATTGTTGAAGGTTTTGGGATCTTCTGCATCAGATGTTGGCAGTA</gDNA_template>
            <first_frame> S  K  K  Y  H  F  F  F  T  F  P  F  E  N  S  D  *  F  L  L  L  *  F  L  *  F  T  C  C  T  V  T  L  V  F  V  I  T  T  I  F  Q  F  L  L  S  Q  E  P  K  I  Q  I  S  L  L  W  G  *  L  K  F  N  I  Y  I  C  V  F  L  V  F  *  F  C  F  K  I  P  F  *  I  S  I  E  K  V  G  I  F  F  V  F  F  V  Y  L  G  K  M  G  T  E  S  N  Y  Q  M  K  V  V  K  G  D  H  G  Y  V  L  E  D  V  P  H  L  T  D  Y  I  P  D  L  P  :  T  H  D  N  P  L  R  S  N  P  A  Y  S  V  V  K :   Q  Y  F  V  D  M  D  D  T  V  P  Q  K  :  V  V  V  H  K  D  S  P  R  G  V  H  F  R  R  A  G  P  R  Q  K  :  V  Y  F  N  S  D  D  V  R  A  C  I  V  T  C  G  G  L  C  P  G  L  N  T  V  I  R  E  I  V  H  S  L  D  Y  M  Y  G  V  S  K  V  F  G  I  D  :  G  G  Y  R  G  F  Y  S  K  N  I  I  N  L  T  P  K  T  V  N  D  I  H  K  R  G  G  T  I  L  G  S  S  R  G  G  H  D  T  T  K  I  V  D  S  I  Q  D  R  G  I  N  Q  :  V  Y  I  I  G  G  D  G  T  Q  K  G  A  A  V  I  Y  E  :  E  I  R  R  R  D  L  K  V  I  V  A  G  I  P  K  T  I  D  N  D  I  P  :  V  I  D  K  S  F  G  F  D  T  A  V  E  E  A  Q  R  A  I  N  A  A  H  V  E  A  E  S  A  E  N  G  I  G  V  V  K  L  M  G  R  Y  S   : G  F  I  A  M  Y  A  T  L  A  S  R  D  V  D  L  C  L  I  P  E  S  P  F  Y  L  E  G  D  G  G  L  F  E  Y  I  E  K  R  L  K  E  N  G  H  M  V  I  V  I  A  E  G  A  G  Q  E  L  L  A  E  E  N  A  H  A  K  N  E  Q  D  A  S  G  N  K  L  L  Q  D  V  G  L  W  I  S  Q  K  I  R  :  D  H  F  A  K  K  T  K  M  P  I  T  L  K  Y  I   : D  P  T  Y  M  I  R  A  V  P  S  N  A  S  D  N  V  Y  C  T  L  L  A  Q  S  C  V  H  G  A  M  A  G  Y  T  G  F  T  S  G  L  V  N  G  R  Q  T  Y  I  P  F  N  :  S  N  K  K  L  G  A  T  H  *  S  N  F  V  V  I  I  C  L  C  S  G  S  L  V  V  F  E  A  L  L  L  T  I  V  L  C  L  I  K  Q  S  *  E  L  N  C  *  R  F  W  D  L  L  H  Q  M  L  A  V </first_frame>
            <second_frame>  V  K  N  I  I  F  F  S  L  S  P  L  K  I  L  T  N  F  C  F  F  D  S  S  N  S  H  A  V  L  S  R  L  F  L  L  L  L  Q  Y  S  S  F  F  S  H  K  N  Q  K  Y  K  S  L  F  C  G  V  D  S  N  L  T  Y  I  Y  V  F  F  W  F  S  D  S  V  L  R  Y  P  F  E  F  P  L  R  K  L  E  S  F  L  Y  F  L  C  I  W  G  R  W  V  L  R  V  I  T  R  *  R  W  *  K  E  I  M  V  M  F  L  K  M  F  L  I  *  L  I  I  S  L  I  F  L :   L  M  T  I  H  C  G  P  I  L  H  I  Q  L  *   : S  S  T  L  L  T  W  M  I  L  S  R  K  R :   L  L  F  T  R  T  V  P  E  G  C  I  S  D  V  L  V  H  V  R  R :   C  I  S  I  R  M  M  F  V  L  V  L  *  L  V  V  V  C  A  L  G  *  T  Q  *  S  E  R  L  Y  I  A  L  I  I  C  M  G  S  A  K  S  L  G  S  M :   E  A  T  G  V  S  I  P  R  I  S  S  I  *  H  Q  R  L  L  M  T  F  I  N  V  V  V  Q  F  L  D  H  H  E  E  A  M  I  P  Q  R  L  L  T  A  Y  R  T  V  E  L  I  R :   F  I  *  L  V  V  M  E  L  R  K  E  Q  L  *  Y  T  R :   K  S  G  G  V  I  S  K  *  L  L  L  E  S  Q  R  Q  L  I  M  I  S  L :   L  S  T  S  H  L  V  L  I  L  L  *  R  R  L  N  V  P  *  M  Q  L  M  L  K  L  K  V  L  K  M  V  L  V  W  *  S  *  W  D  A  I  V  :  D  S  S  Q  C  M  P  L  W  R  A  E  M  L  I  S  V  *  F  Q  S  L  H  F  I  L  K  E  M  A  D  S  S  N  T  L  K  N  G  S  K  K  M  G  T  W  L  L  *  *  L  K  E  Q  G  K  N  F  L  Q  K  R  M  R  M  P  K  T  S  K  M  L  R  V  T  S  F  F  R  M  L  V  C  G  F  P  R  K  S  G :   I  I  L  L  K  K  L  R  C  P  L  L  L  N  I  *  :  I  R  L  T  *  F  V  L  F  Q  V  M  P  L  I  M  Y  I  A  L  F  L  L  K  V  V  F  M  E  Q  W  Q  D  T  Q  V  S  P  Q  D  L  S  M  V  A  R  L  I  F  H  S  I :   V  I  K  N  L  A  R  H  T  E  V  T  L  L  *  S  F  A  C  A  V  V  L  L  L  S  L  K  L  C  C  L  P  L  Y  C  A  L  *  N  S  L  R  N  L  I  V  E  G  F  G  I  F  C  I  R  C  W  Q   </second_frame>
            <third_frame>   *  K  I  S  F  F  F  H  F  P  L  *  K  F  *  L  I  F  A  S  L  I  P  L  I  H  M  L  Y  C  H  A  C  F  C  Y  Y  Y  N  I  P  V  S  S  L  T  R  T  K  N  T  N  L  S  F  V  G  L  T  Q  I  *  H  I  Y  M  C  F  F  G  F  L  I  L  F  *  D  T  L  L  N  F  H  *  E  S  W  N  L  F  C  I  F  C  V  F  G  E  D  G  Y  *  E  *  L  P  D  E  G  G  E  R  R  S  W  L  C  S  *  R  C  S  S  F  D  *  L  Y  P  *  S  S   : Y  S  *  Q  S  I  A  V  Q  S  C  I  F  S  C  E  :  A  V  L  C  *  H  G  *  Y  C  P  A  K   : G  C  C  S  Q  G  Q  S  Q  R  G  A  F  P  T  C  W  S  T  S  E   : G  V  F  Q  F  G  *  C  S  C  L  Y  C  N  L  W  W  F  V  P  W  A  K  H  S  D  Q  R  D  C  T  *  P  *  L  Y  V  W  G  Q  Q  S  L  W  D  R   : W  R  L  Q  G  F  L  F  Q  E  Y  H  Q  F  D  T  K  D  C  *  *  H  S  *  T  W  W  Y  N  S  W  I  I  T  R  R  P  *  Y  H  K  D  C  *  Q  H  T  G  P  W  N  *  S   : G  L  Y  N  W  W  *  W  N  S  E  R  S  S  C  N  I  R   : G  N  Q  A  A  *  S  Q  S  N  C  C  W  N  P  K  D  N  *  *  *  Y  P   : C  Y  R  Q  V  I  W  F  *  Y  C  C  R  G  G  S  T  C  H  K  C  S  S  C  *  S  *  K  C  *  K  W  Y  W  C  G  E  A  N  G  T  L  *  W :   I  H  R  N  V  C  H  F  G  E  Q  R  C  *  S  L  S  N  S  R  V  S  I  L  S  *  R  R  W  R  T  L  R  I  H  *  K  T  A  Q  R  K  W  A  H  G  Y  C  D  S  *  R  S  R  A  R  T  S  C  R  R  E  C  A  C  Q  K  R  A  R  C  F  G  *  Q  A  S  S  G  C  W  F  V  D  F  P  E  N  Q   : G  S  F  C  *  K  N  *  D  A  H  Y  S  *  I  Y  R :   S  D  L  H  D  S  C  C  S  K  *  C  L  *  *  C  I  L  H  S  S  C  S  K  L  C  S  W  S  N  G  R  I  H  R  F  H  L  R  T  C  Q  W  S  P  D  L  Y  S  I  Q   : *  *  *  K  T  W  R  D  T  L  K  *  L  C  C  N  H  L  P  V  Q  W  F  S  C  C  L  *  S  F  A  A  Y  H  C  I  V  P  Y  K  T  V  L  G  T  *  L  L  K  V  L  G  S  S  A  S  D  V  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68415" stop="68570"/>
                    <exon start="69605" stop="69651"/>
                    <exon start="69770" stop="69809"/>
                    <exon start="70990" stop="71052"/>
                    <exon start="71154" stop="71291"/>
                    <exon start="72514" stop="72672"/>
                    <exon start="73136" stop="73189"/>
                    <exon start="73782" stop="73850"/>
                    <exon start="74107" stop="74236"/>
                    <exon start="74603" stop="74871"/>
                    <exon start="75561" stop="75609"/>
                    <exon start="75683" stop="75837"/>
                    <exon start="76941" stop="76970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1356</number_coding_nucleotides>
                  <number_encoded_amino_acids>452</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISIEKVGIFFVFFVYLGKMGTESNYQMKVVKGDHGYVLEDVPHLTDYIPDLPTHDNPLRSNPAYSVVKQYFVDMDDTVPQKVVVHKDSPRGVHFRRAGPRQKVYFNSDDVRACIVTCGGLCPGLNTVIREIVHSLDYMYGVSKVFGIDGGYRGFYSKNIINLTPKTVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRRRDLKVIVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESAENGIGVVKLMGRYSGFIAMYATLASRDVDLCLIPESPFYLEGDGGLFEYIEKRLKENGHMVIVIAEGAGQELLAEENAHAKNEQDASGNKLLQDVGLWISQKIRDHFAKKTKMPITLKYIDPTYMIRAVPSNASDNVYCTLLAQSCVHGAMAGYTGFTSGLVNGRQTYIPFNSNKKLGATH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68172" e_stop="68570"/>
            <exon e_start="69605" e_stop="69651"/>
            <exon e_start="69770" e_stop="69809"/>
            <exon e_start="70990" e_stop="71052"/>
            <exon e_start="71154" e_stop="71291"/>
            <exon e_start="72514" e_stop="72672"/>
            <exon e_start="73136" e_stop="73189"/>
            <exon e_start="73782" e_stop="73850"/>
            <exon e_start="74107" e_stop="74236"/>
            <exon e_start="74603" e_stop="74871"/>
            <exon e_start="75561" e_stop="76064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.930" e_score="0.993"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68172" e_stop="68570" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68571" i_stop="69604" i_length="1034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69605" e_stop="69651" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69652" i_stop="69769" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69770" e_stop="69809" e_length="40"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69810" i_stop="70989" i_length="1180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70990" e_stop="71052" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.702">
            <gDNA_intron_boundary i_start="71053" i_stop="71153" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71154" e_stop="71291" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.918" acc_prob="0.790">
            <gDNA_intron_boundary i_start="71292" i_stop="72513" i_length="1222"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72514" e_stop="72672" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="72673" i_stop="73135" i_length="463"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73136" e_stop="73189" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="73190" i_stop="73781" i_length="592"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73782" e_stop="73850" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73851" i_stop="74106" i_length="256"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="74107" e_stop="74236" e_length="130"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74237" i_stop="74602" i_length="366"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="74603" e_stop="74871" e_length="269"/>
          </exon>
          <intron i_serial="10" don_prob="0.758" acc_prob="0.930">
            <gDNA_intron_boundary i_start="74872" i_stop="75560" i_length="689"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="75561" e_stop="76064" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68172" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68263" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68319" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68325" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
              <exon start="69605" stop="69651"/>
              <exon start="69770" stop="69809"/>
              <exon start="70990" stop="71052"/>
              <exon start="71154" stop="71291"/>
              <exon start="72514" stop="72577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68334" stop="68570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72514" stop="72672"/>
              <exon start="73136" stop="73189"/>
              <exon start="73782" stop="73850"/>
              <exon start="74107" stop="74236"/>
              <exon start="74603" stop="74654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74217" stop="74236"/>
              <exon start="74603" stop="74871"/>
              <exon start="75561" stop="76064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAAAAATATCATTTTTTTTTCACTTTCCCCTTTGAAAATTCTGACTAATTTTTGCTTCTTTGATTCCTCTAATTCACATGCTGTACTGTCACGCTTGTTTTTGTTATTACTACAATATTCCAGTTTCTTCTCTCACAAGAACCAAAAATACAAATCTCTCTTTTGTGGGGTTGACTCAAATTTAACATATATATATGTGTTTTTTTGGTTTTCTGATTCTGTTTTAAGATACCCTTTTGAATTTCCATTGAGAAAGTTGGAATCTTTTTTGTATTTTTTGTGTATTTGGGGAAGATGGGTACTGAGAGTAATTACCAGATGAAGGTGGTGAAAGGAGATCATGGTTATGTTCTTGAAGATGTTCCTCATTTGACTGATTATATCCCTGATCTTCCT : ACTCATGACAATCCATTGCGGTCCAATCCTGCATATTCAGTTGTGAA : GCAGTACTTTGTTGACATGGATGATACTGTCCCGCAAAAG : GTTGTTGTTCACAAGGACAGTCCCAGAGGGGTGCATTTCCGACGTGCTGGTCCACGTCAGAAG : GTGTATTTCAATTCGGATGATGTTCGTGCTTGTATTGTAACTTGTGGTGGTTTGTGCCCTGGGCTAAACACAGTGATCAGAGAGATTGTACATAGCCTTGATTATATGTATGGGGTCAGCAAAGTCTTTGGGATCGAT : GGAGGCTACAGGGGTTTCTATTCCAAGAATATCATCAATTTGACACCAAAGACTGTTAATGACATTCATAAACGTGGTGGTACAATTCTTGGATCATCACGAGGAGGCCATGATACCACAAAGATTGTTGACAGCATACAGGACCGTGGAATTAATCAG : GTTTATATAATTGGTGGTGATGGAACTCAGAAAGGAGCAGCTGTAATATACGAG : GAAATCAGGCGGCGTGATCTCAAAGTAATTGTTGCTGGAATCCCAAAGACAATTGATAATGATATCCCT : GTTATCGACAAGTCATTTGGTTTTGATACTGCTGTAGAGGAGGCTCAACGTGCCATAAATGCAGCTCATGTTGAAGCTGAAAGTGCTGAAAATGGTATTGGTGTGGTGAAGCTAATGGGACGCTATAGTG : GATTCATCGCAATGTATGCCACTTTGGCGAGCAGAGATGTTGATCTCTGTCTAATTCCAGAGTCTCCATTTTATCTTGAAGGAGATGGCGGACTCTTCGAATACATTGAAAAACGGCTCAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGAGCAGGGCAAGAACTTCTTGCAGAAGAGAATGCGCATGCCAAAAACGAGCAAGATGCTTCGGGTAACAAGCTTCTTCAGGATGTTGGTTTGTGGATTTCCCAGAAAATCAGG : GATCATTTTGCTAAAAAAACTAAGATGCCCATTACTCTTAAATATATAGGTAAGAAATTTCAACCTCTTAATTGGTGGATTCGTTGCAACATGTATCAAGCTGCTCGCTTTTTTTTTTTCAGATCCGACTTACATGATTCGTGCTGTTCCAAGTAATGCCTCTGATAATGTATATTGCACTCTTCTTGCTCAAAGTTGTGTTCATGGAGCAATGGCAGGATACACAGGTTTCACCTCAGGACTTGTCAATGGTCGCCAGACTTATATTCCATTCAATGTAAGTCGTTATTCATTGACTGGTCTTTTCAGTGGAAATGATCTTGAGAATTTCCATGCATGTACCTCTCAATGTCAAGGTTTTGGGCATCCTTTATGAGTACTTCTTTCCGTTATTAAGTAAATAGCTTAAGATGACAAAAATAGTAATACTGTAGTTGAGATCCACAGGCCATTCATGCTTGAGACAGGCGAAAGTAATTATTATCATATGATATTTGTTACTAA</gDNA_template>
            <first_frame> S  K  K  Y  H  F  F  F  T  F  P  F  E  N  S  D  *  F  L  L  L  *  F  L  *  F  T  C  C  T  V  T  L  V  F  V  I  T  T  I  F  Q  F  L  L  S  Q  E  P  K  I  Q  I  S  L  L  W  G  *  L  K  F  N  I  Y  I  C  V  F  L  V  F  *  F  C  F  K  I  P  F  *  I  S  I  E  K  V  G  I  F  F  V  F  F  V  Y  L  G  K  M  G  T  E  S  N  Y  Q  M  K  V  V  K  G  D  H  G  Y  V  L  E  D  V  P  H  L  T  D  Y  I  P  D  L  P  :  T  H  D  N  P  L  R  S  N  P  A  Y  S  V  V  K :   Q  Y  F  V  D  M  D  D  T  V  P  Q  K  :  V  V  V  H  K  D  S  P  R  G  V  H  F  R  R  A  G  P  R  Q  K  :  V  Y  F  N  S  D  D  V  R  A  C  I  V  T  C  G  G  L  C  P  G  L  N  T  V  I  R  E  I  V  H  S  L  D  Y  M  Y  G  V  S  K  V  F  G  I  D  :  G  G  Y  R  G  F  Y  S  K  N  I  I  N  L  T  P  K  T  V  N  D  I  H  K  R  G  G  T  I  L  G  S  S  R  G  G  H  D  T  T  K  I  V  D  S  I  Q  D  R  G  I  N  Q  :  V  Y  I  I  G  G  D  G  T  Q  K  G  A  A  V  I  Y  E  :  E  I  R  R  R  D  L  K  V  I  V  A  G  I  P  K  T  I  D  N  D  I  P  :  V  I  D  K  S  F  G  F  D  T  A  V  E  E  A  Q  R  A  I  N  A  A  H  V  E  A  E  S  A  E  N  G  I  G  V  V  K  L  M  G  R  Y  S   : G  F  I  A  M  Y  A  T  L  A  S  R  D  V  D  L  C  L  I  P  E  S  P  F  Y  L  E  G  D  G  G  L  F  E  Y  I  E  K  R  L  K  E  N  G  H  M  V  I  V  I  A  E  G  A  G  Q  E  L  L  A  E  E  N  A  H  A  K  N  E  Q  D  A  S  G  N  K  L  L  Q  D  V  G  L  W  I  S  Q  K  I  R  :  D  H  F  A  K  K  T  K  M  P  I  T  L  K  Y  I  G  K  K  F  Q  P  L  N  W  W  I  R  C  N  M  Y  Q  A  A  R  F  F  F  F  R  S  D  L  H  D  S  C  C  S  K  *  C  L  *  *  C  I  L  H  S  S  C  S  K  L  C  S  W  S  N  G  R  I  H  R  F  H  L  R  T  C  Q  W  S  P  D  L  Y  S  I  Q  C  K  S  L  F  I  D  W  S  F  Q  W  K  *  S  *  E  F  P  C  M  Y  L  S  M  S  R  F  W  A  S  F  M  S  T  S  F  R  Y  *  V  N  S  L  R  *  Q  K  *  *  Y  C  S  *  D  P  Q  A  I  H  A  *  D  R  R  K  *  L  L  S  Y  D  I  C  Y  * </first_frame>
            <second_frame>  V  K  N  I  I  F  F  S  L  S  P  L  K  I  L  T  N  F  C  F  F  D  S  S  N  S  H  A  V  L  S  R  L  F  L  L  L  L  Q  Y  S  S  F  F  S  H  K  N  Q  K  Y  K  S  L  F  C  G  V  D  S  N  L  T  Y  I  Y  V  F  F  W  F  S  D  S  V  L  R  Y  P  F  E  F  P  L  R  K  L  E  S  F  L  Y  F  L  C  I  W  G  R  W  V  L  R  V  I  T  R  *  R  W  *  K  E  I  M  V  M  F  L  K  M  F  L  I  *  L  I  I  S  L  I  F  L :   L  M  T  I  H  C  G  P  I  L  H  I  Q  L  *   : S  S  T  L  L  T  W  M  I  L  S  R  K  R :   L  L  F  T  R  T  V  P  E  G  C  I  S  D  V  L  V  H  V  R  R :   C  I  S  I  R  M  M  F  V  L  V  L  *  L  V  V  V  C  A  L  G  *  T  Q  *  S  E  R  L  Y  I  A  L  I  I  C  M  G  S  A  K  S  L  G  S  M :   E  A  T  G  V  S  I  P  R  I  S  S  I  *  H  Q  R  L  L  M  T  F  I  N  V  V  V  Q  F  L  D  H  H  E  E  A  M  I  P  Q  R  L  L  T  A  Y  R  T  V  E  L  I  R :   F  I  *  L  V  V  M  E  L  R  K  E  Q  L  *  Y  T  R :   K  S  G  G  V  I  S  K  *  L  L  L  E  S  Q  R  Q  L  I  M  I  S  L :   L  S  T  S  H  L  V  L  I  L  L  *  R  R  L  N  V  P  *  M  Q  L  M  L  K  L  K  V  L  K  M  V  L  V  W  *  S  *  W  D  A  I  V  :  D  S  S  Q  C  M  P  L  W  R  A  E  M  L  I  S  V  *  F  Q  S  L  H  F  I  L  K  E  M  A  D  S  S  N  T  L  K  N  G  S  K  K  M  G  T  W  L  L  *  *  L  K  E  Q  G  K  N  F  L  Q  K  R  M  R  M  P  K  T  S  K  M  L  R  V  T  S  F  F  R  M  L  V  C  G  F  P  R  K  S  G :   I  I  L  L  K  K  L  R  C  P  L  L  L  N  I  *  V  R  N  F  N  L  L  I  G  G  F  V  A  T  C  I  K  L  L  A  F  F  F  S  D  P  T  Y  M  I  R  A  V  P  S  N  A  S  D  N  V  Y  C  T  L  L  A  Q  S  C  V  H  G  A  M  A  G  Y  T  G  F  T  S  G  L  V  N  G  R  Q  T  Y  I  P  F  N  V  S  R  Y  S  L  T  G  L  F  S  G  N  D  L  E  N  F  H  A  C  T  S  Q  C  Q  G  F  G  H  P  L  *  V  L  L  S  V  I  K  *  I  A  *  D  D  K  N  S  N  T  V  V  E  I  H  R  P  F  M  L  E  T  G  E  S  N  Y  Y  H  M  I  F  V  T   </second_frame>
            <third_frame>   *  K  I  S  F  F  F  H  F  P  L  *  K  F  *  L  I  F  A  S  L  I  P  L  I  H  M  L  Y  C  H  A  C  F  C  Y  Y  Y  N  I  P  V  S  S  L  T  R  T  K  N  T  N  L  S  F  V  G  L  T  Q  I  *  H  I  Y  M  C  F  F  G  F  L  I  L  F  *  D  T  L  L  N  F  H  *  E  S  W  N  L  F  C  I  F  C  V  F  G  E  D  G  Y  *  E  *  L  P  D  E  G  G  E  R  R  S  W  L  C  S  *  R  C  S  S  F  D  *  L  Y  P  *  S  S   : Y  S  *  Q  S  I  A  V  Q  S  C  I  F  S  C  E  :  A  V  L  C  *  H  G  *  Y  C  P  A  K   : G  C  C  S  Q  G  Q  S  Q  R  G  A  F  P  T  C  W  S  T  S  E   : G  V  F  Q  F  G  *  C  S  C  L  Y  C  N  L  W  W  F  V  P  W  A  K  H  S  D  Q  R  D  C  T  *  P  *  L  Y  V  W  G  Q  Q  S  L  W  D  R   : W  R  L  Q  G  F  L  F  Q  E  Y  H  Q  F  D  T  K  D  C  *  *  H  S  *  T  W  W  Y  N  S  W  I  I  T  R  R  P  *  Y  H  K  D  C  *  Q  H  T  G  P  W  N  *  S   : G  L  Y  N  W  W  *  W  N  S  E  R  S  S  C  N  I  R   : G  N  Q  A  A  *  S  Q  S  N  C  C  W  N  P  K  D  N  *  *  *  Y  P   : C  Y  R  Q  V  I  W  F  *  Y  C  C  R  G  G  S  T  C  H  K  C  S  S  C  *  S  *  K  C  *  K  W  Y  W  C  G  E  A  N  G  T  L  *  W :   I  H  R  N  V  C  H  F  G  E  Q  R  C  *  S  L  S  N  S  R  V  S  I  L  S  *  R  R  W  R  T  L  R  I  H  *  K  T  A  Q  R  K  W  A  H  G  Y  C  D  S  *  R  S  R  A  R  T  S  C  R  R  E  C  A  C  Q  K  R  A  R  C  F  G  *  Q  A  S  S  G  C  W  F  V  D  F  P  E  N  Q   : G  S  F  C  *  K  N  *  D  A  H  Y  S  *  I  Y  R  *  E  I  S  T  S  *  L  V  D  S  L  Q  H  V  S  S  C  S  L  F  F  F  Q  I  R  L  T  *  F  V  L  F  Q  V  M  P  L  I  M  Y  I  A  L  F  L  L  K  V  V  F  M  E  Q  W  Q  D  T  Q  V  S  P  Q  D  L  S  M  V  A  R  L  I  F  H  S  M  *  V  V  I  H  *  L  V  F  S  V  E  M  I  L  R  I  S  M  H  V  P  L  N  V  K  V  L  G  I  L  Y  E  Y  F  F  P  L  L  S  K  *  L  K  M  T  K  I  V  I  L  *  L  R  S  T  G  H  S  C  L  R  Q  A  K  V  I  I  I  I  *  Y  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68415" stop="68570"/>
                    <exon start="69605" stop="69651"/>
                    <exon start="69770" stop="69809"/>
                    <exon start="70990" stop="71052"/>
                    <exon start="71154" stop="71291"/>
                    <exon start="72514" stop="72672"/>
                    <exon start="73136" stop="73189"/>
                    <exon start="73782" stop="73850"/>
                    <exon start="74107" stop="74236"/>
                    <exon start="74603" stop="74871"/>
                    <exon start="75561" stop="75716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1278</number_coding_nucleotides>
                  <number_encoded_amino_acids>426</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISIEKVGIFFVFFVYLGKMGTESNYQMKVVKGDHGYVLEDVPHLTDYIPDLPTHDNPLRSNPAYSVVKQYFVDMDDTVPQKVVVHKDSPRGVHFRRAGPRQKVYFNSDDVRACIVTCGGLCPGLNTVIREIVHSLDYMYGVSKVFGIDGGYRGFYSKNIINLTPKTVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRRRDLKVIVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESAENGIGVVKLMGRYSGFIAMYATLASRDVDLCLIPESPFYLEGDGGLFEYIEKRLKENGHMVIVIAEGAGQELLAEENAHAKNEQDASGNKLLQDVGLWISQKIRDHFAKKTKMPITLKYIGKKFQPLNWWIRCNMYQAARFFFFRSDLHDSCCSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="79459" PGL_stop="77622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79459" e_stop="79371"/>
            <exon e_start="79090" e_stop="78995"/>
            <exon e_start="78905" e_stop="78809"/>
            <exon e_start="78648" e_stop="78531"/>
            <exon e_start="78090" e_stop="78018"/>
            <exon e_start="77934" e_stop="77622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.555" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.532" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79459" e_stop="79371" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.985">
            <gDNA_intron_boundary i_start="79370" i_stop="79091" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79090" e_stop="78995" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="0.921">
            <gDNA_intron_boundary i_start="78994" i_stop="78906" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78905" e_stop="78809" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.987">
            <gDNA_intron_boundary i_start="78808" i_stop="78649" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78648" e_stop="78531" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.555">
            <gDNA_intron_boundary i_start="78530" i_stop="78091" i_length="440"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78090" e_stop="78018" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.532">
            <gDNA_intron_boundary i_start="78017" i_stop="77935" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77934" e_stop="77622" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79459" stop="79371"/>
              <exon start="79090" stop="78995"/>
              <exon start="78905" stop="78809"/>
              <exon start="78648" stop="78531"/>
              <exon start="78090" stop="78018"/>
              <exon start="77934" stop="77660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78863" stop="78809"/>
              <exon start="78648" stop="78531"/>
              <exon start="78090" stop="78018"/>
              <exon start="77934" stop="77622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTTGATTCTGGAATATGCTGCCAAGGGTGAACTCTATAAGGAGCTGCAAAAGTGCAAATATTTTAGTGAAAGGCGTGCTGCAACT : TATGTTGCATCATTGGCGCGAGCCCTCATATACTGTCACGGGAAGCATGTAATACATAGAGATATTAAGCCAGAGAACCTTCTGGTTGGTGCACAG : GGTGAACTAAAAATTGCAGACTTTGGTTGGTCGGTACACACCTTCAATCGCAGACGCACTATGTGTGGCACTCTAGACTATTTGCCACCTGAGATGG : TGGAAAGTGTGGAGCATGATGCAAATGTGGACATTTGGAGCCTTGGTATTCTCTGCTATGAATTCTTATACGGGGTGCCTCCATTTGAAGCAAAGGAACACTCAGACACATATAGAAG : GATTATACAAGTGGATCTAAAATTTCCTTCCAGACCAGTAGTCTCATCAGCTGCAAAGGATCTTATTACACAG : ATGCTAGTCAAGGATTCTTCGCAACGTCTGCCCTTGAAGAAGTTACTAGAGCATCCTTGGATTGTACAGAATGCTGATCCTTCTGGTGTTTATAAGGGTTAATGGATACATCTTATTGCAAGTTCCAATCATATACTGCATTCTTTTAAAAAAATTTTCAAGAAGCCTTTGATATATCGATAGGATAAAACATTGTCATTTACAACGAGAGGAATGACTTATAGAGCAGTAATGAAAAACACTTTCATGTAATCACATTGTATGAATACTACTTGCCTATGTTGCTTGAAAATAAGAAGAATTACTTTTCCAA</gDNA_template>
            <first_frame> F  I  *  F  W  N  M  L  P  R  V  N  S  I  R  S  C  K  S  A  N  I  L  V  K  G  V  L  Q  L :   M  L  H  H  W  R  E  P  S  Y  T  V  T  G  S  M  *  Y  I  E  I  L  S  Q  R  T  F  W  L  V  H  R :   V  N  *  K  L  Q  T  L  V  G  R  Y  T  P  S  I  A  D  A  L  C  V  A  L  *  T  I  C  H  L  R  W  :  W  K  V  W  S  M  M  Q  M  W  T  F  G  A  L  V  F  S  A  M  N  S  Y  T  G  C  L  H  L  K  Q  R  N  T  Q  T  H  I  E   : G  L  Y  K  W  I  *  N  F  L  P  D  Q  *  S  H  Q  L  Q  R  I  L  L  H  R :   C  *  S  R  I  L  R  N  V  C  P  *  R  S  Y  *  S  I  L  G  L  Y  R  M  L  I  L  L  V  F  I  R  V  N  G  Y  I  L  L  Q  V  P  I  I  Y  C  I  L  L  K  K  F  S  R  S  L  *  Y  I  D  R  I  K  H  C  H  L  Q  R  E  E  *  L  I  E  Q  *  *  K  T  L  S  C  N  H  I  V  *  I  L  L  A  Y  V  A  *  K  *  E  E  L  L  F  Q </first_frame>
            <second_frame>  L  F  D  S  G  I  C  C  Q  G  *  T  L  *  G  A  A  K  V  Q  I  F  *  *  K  A  C  C  N   : L  C  C  I  I  G  A  S  P  H  I  L  S  R  E  A  C  N  T  *  R  Y  *  A  R  E  P  S  G  W  C  T   : G  *  T  K  N  C  R  L  W  L  V  G  T  H  L  Q  S  Q  T  H  Y  V  W  H  S  R  L  F  A  T  *  D  G :   G  K  C  G  A  *  C  K  C  G  H  L  E  P  W  Y  S  L  L  *  I  L  I  R  G  A  S  I  *  S  K  G  T  L  R  H  I  *  K  :  D  Y  T  S  G  S  K  I  S  F  Q  T  S  S  L  I  S  C  K  G  S  Y  Y  T   : D  A  S  Q  G  F  F  A  T  S  A  L  E  E  V  T  R  A  S  L  D  C  T  E  C  *  S  F  W  C  L  *  G  L  M  D  T  S  Y  C  K  F  Q  S  Y  T  A  F  F  *  K  N  F  Q  E  A  F  D  I  S  I  G  *  N  I  V  I  Y  N  E  R  N  D  L  *  S  S  N  E  K  H  F  H  V  I  T  L  Y  E  Y  Y  L  P  M  L  L  E  N  K  K  N  Y  F  S   </second_frame>
            <third_frame>   Y  L  I  L  E  Y  A  A  K  G  E  L  Y  K  E  L  Q  K  C  K  Y  F  S  E  R  R  A  A  T  :  Y  V  A  S  L  A  R  A  L  I  Y  C  H  G  K  H  V  I  H  R  D  I  K  P  E  N  L  L  V  G  A  Q  :  G  E  L  K  I  A  D  F  G  W  S  V  H  T  F  N  R  R  R  T  M  C  G  T  L  D  Y  L  P  P  E  M   : V  E  S  V  E  H  D  A  N  V  D  I  W  S  L  G  I  L  C  Y  E  F  L  Y  G  V  P  P  F  E  A  K  E  H  S  D  T  Y  R  R :   I  I  Q  V  D  L  K  F  P  S  R  P  V  V  S  S  A  A  K  D  L  I  T  Q  :  M  L  V  K  D  S  S  Q  R  L  P  L  K  K  L  L  E  H  P  W  I  V  Q  N  A  D  P  S  G  V  Y  K  G  *  W  I  H  L  I  A  S  S  N  H  I  L  H  S  F  K  K  I  F  K  K  P  L  I  Y  R  *  D  K  T  L  S  F  T  T  R  G  M  T  Y  R  A  V  M  K  N  T  F  M  *  S  H  C  M  N  T  T  C  L  C  C  L  K  I  R  R  I  T  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0127K17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79457" stop="79371"/>
                    <exon start="79090" stop="78995"/>
                    <exon start="78905" stop="78809"/>
                    <exon start="78648" stop="78531"/>
                    <exon start="78090" stop="78018"/>
                    <exon start="77934" stop="77833"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLILEYAAKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDANVDIWSLGILCYEFLYGVPPFEAKEHSDTYRRIIQVDLKFPSRPVVSSAAKDLITQMLVKDSSQRLPLKKLLEHPWIVQNADPSGVYKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 298 chains have been computed
$ 
$ memory statistics:
$ 400120 bytes spliced alignments in total
$ 179 spliced alignments have been stored
$ 2235 bytes was the average size of a spliced alignment
$ 31416 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1963 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 321 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:12:50
-->
