<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:36:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26131" stop="25106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25831" g_stop="25406" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25831" e_stop="25406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTAGAAAACCCTTCGGTGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAATATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGATAGCAAAACTGAAGCTGAAGACCACCAAATTCAACTCTGTTAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGAAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTACGAATTTCTCTCTTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTAAAAAAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTC-TTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715187" ref_strand="+" ref_description="SGN-E715187 [FB13CD05]">
      <seq>gaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttttaggattgagttagttctaatatctactaaatttgtaagtttaaagacataatatcatcacccaaaaattagttgcaaagcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28444" stop="27429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28144" g_stop="27736" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="435"/>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E715187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28144" e_stop="27736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</genome_strand>
        <mrna_strand>GAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355163" ref_strand="+" ref_description="SGN-E355163 [cTOS-18-G14]">
      <seq>tctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttctaggattgagttagttctaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29315" stop="27495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29015" g_stop="28988" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27788" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="643" r_length="615" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E355163" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29015" e_stop="28988"/>
          <exon e_start="28402" e_stop="27788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATATCTACTA</genome_strand>
        <mrna_strand>TCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706287" ref_strand="+" ref_description="SGN-E706287 [FA29CB09]">
      <seq>atcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaaataaagtttttaggattgagntagttctaatatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29557" stop="27490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29257" g_stop="28988" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27790" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="883" r_length="613" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E706287" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29257" e_stop="28988"/>
          <exon e_start="28402" e_stop="27790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATATCTAC</genome_strand>
        <mrna_strand>ATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAAATAAAGTTTTTAGGATTGAGNTAGTTCTAATATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207692" ref_strand="+" ref_description="SGN-E207692 [cLEC-32-N12]">
      <seq>tagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaagctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttctaggattgagttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28669" stop="27501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28369" g_stop="27801" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E207692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28369" e_stop="27801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTT</genome_strand>
        <mrna_strand>TAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAAGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393457" ref_strand="+" ref_description="SGN-E393457 [TUS-38-C8](-)">
      <seq>gaaaaaataggacagaatctgaagagaagctaaaagatgatccaactctgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttctaggattgagttaaaaaaaaaaaaaaaaaaactcgagactaggggggggcccggtacccaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28618" stop="27504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28318" g_stop="27804" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="534"/>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E393457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28318" e_stop="27804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTA</genome_strand>
        <mrna_strand>GAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTCTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393486" ref_strand="+" ref_description="SGN-E393486 [TUS-38-K14](-)">
      <seq>aaaaaattgggcagaattttgaagagaaggtaaaagatgatccaactttgccaattcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatatttcaacccattaattaacggagggtcaaagcatttagatgatatgatcacacgagggtgggggatccttgtcaccggggtttttgaagatcctttaattgatgcctcgggcaaatttggtgattttattgaaaagaaaggtgtaaaaactttcaaggtttttggagatggttaccatgttattgagttgtttgagccatttaagggtgcagttttatttgatgccattagggatttcatatttggtaataaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggggggtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttttcatgaataaaagtttttagggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28617" stop="27508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28317" g_stop="27808" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="539"/>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E393486" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28317" e_stop="27808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAGGACAGAA-TCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGA</genome_strand>
        <mrna_strand>AAAAAATTGGGCAGAATTTTGAAGAGAAGGTAAAAGATGATCCAACTTTGCCAATTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTTCAACCCATTAATTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGGTGGGGGATCCTTGTCACCGGGGTTTTTGAAGATCCTTTAATTGATGCCTCGGGCAAATTTGGTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGGTTTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATTTAAGGGTGCAGTTTTATTTGATGCCATTAGGGATTTCATATTTGGTAATAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGGGGGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTTTCATGAATAAAAGTTTTTAGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354925" ref_strand="+" ref_description="SGN-E354925 [cTOS-19-O11]">
      <seq>tcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttggtttgttatatttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29361" stop="27606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29061" g_stop="28988" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27906" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="571" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E354925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29061" e_stop="28988"/>
          <exon e_start="28402" e_stop="27906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTT</genome_strand>
        <mrna_strand>TCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGGTTTGTTATATTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213517" ref_strand="+" ref_description="SGN-E213517 [cLEC-71-G7]">
      <seq>ttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29479" stop="27649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29179" g_stop="28988" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27949" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="646" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E213517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29179" e_stop="28988"/>
          <exon e_start="28402" e_stop="27949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTAC</genome_strand>
        <mrna_strand>TTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213989" ref_strand="+" ref_description="SGN-E213989 [cLEC-80-B20]">
      <seq>ttttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttatttgagtgtttgagccatctaaggctgcagtcttatttgatgccattanggatctcatatctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29504" stop="27650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29204" g_stop="28988" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27950" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="670" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E213989" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29204" e_stop="28988"/>
          <exon e_start="28402" e_stop="27950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTA</genome_strand>
        <mrna_strand>TTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTTGAGTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTANGGATCTCATATCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708086" ref_strand="+" ref_description="SGN-E708086 [FA34DC07]">
      <seq>ccatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32838" stop="27677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29509" g_stop="28988" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27977" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="948" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E708086" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29509" e_stop="28988"/>
          <exon e_start="28402" e_stop="27977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTG</genome_strand>
        <mrna_strand>CCATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205388" ref_strand="+" ref_description="SGN-E205388 [cLEC-28-C9]">
      <seq>gacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29431" stop="27696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29131" g_stop="28988" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="27996" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="551" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205388" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29131" e_stop="28988"/>
          <exon e_start="28402" e_stop="27996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCT</genome_strand>
        <mrna_strand>GACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204710" ref_strand="+" ref_description="SGN-E204710 [cLEC-14-N23]">
      <seq>tgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaagtgtaaaaactttcaagctctttggagatggttaccatgttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29409" stop="27713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29109" g_stop="28988" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28013" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="512" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E204710" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29109" e_stop="28988"/>
          <exon e_start="28402" e_stop="28013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTG</genome_strand>
        <mrna_strand>TGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAAGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351897" ref_strand="+" ref_description="SGN-E351897 [cTOS-8-H21]">
      <seq>tgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatccctttatcgatgcctcgcgncactttgctgantttattgaaaagaaaggtgtaaaaaactttcagctctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29541" stop="27733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29241" g_stop="28988" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28033" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="624" r_length="370" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E351897" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29241" e_stop="28988"/>
          <exon e_start="28402" e_stop="28033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGG</genome_strand>
        <mrna_strand>TGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCCTTTATCGATGCCTCGCGNCACTTTGCTGANTTTATTGAAAAGAAAGGTGTAAAAAACTTTCAGCTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704841" ref_strand="+" ref_description="SGN-E704841 [FA25BF10]">
      <seq>atcaataattatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctgatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacaccaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32848" stop="27767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32548" g_stop="32019" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32018" i_stop="28403" i_length="3616">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28067" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="866" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E704841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32548" e_stop="32019"/>
          <exon e_start="28402" e_stop="28067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAGTTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTCAAACTGGTGGCGTAAATTTACGCCAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTATTTTTTTTTAATCAGTCAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTATGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACTGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAACATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAGAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGGTGCCTCGACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGTGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAATTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGCATACATATGTATGATATTATTTTCTGATCCTTCGCATGGATGTTGGTGAGAAATTTAGACTTTGAAATTTATTGAATGTGAAATATTCAATAAGACAAGAATAGAATTTATGAAAACCATGCATGTGATTAATCAACCCCAATCATTTTTATCAAATTCAACTTAACTTCTATTAAAAAGGATGTGGTGGCAAAGTTTTAAAAATTGATTCTACTTTGTTAGACCCACAACTAAAAGCTTGTTCAACTAGACAAACTTATGTACTAATAAACATTATCATAATTTCATAATTTTTACTACACACTCTCTCTCTCTCTTTTGCATGAGACAGTAATAGTTGAGTGGTTGATTCGATTCCTTGGAAAACTTTATTCTTTGTGTTTCACAATAACCTGTGCACCACTCTTTTTCTAGCTTAGCTTGTGCAATCCTATAGGCAGAGAGAGTAGTATGGTGGGAATATTGATCAATAATGAAGCTGTCCAAGTGATTGAATCCACCACTCAACTGCTACTATTTTATGTAAATGAAAGAGAAAAGTAAAACATGAAATGATAATAATAAATAATATTATGTAAGTATGTCTAGTTGAACATGTTTTAAGTTTTGGGGTCCAGCAAAGTAGGATAATTTTTTGAATTTGCAACCATTTCCTCTTTAAATAGATGTGAATATGAATGTGATGAAAATGATACGGGCTGATTAACCAAGATTCATATAGAGAAGTGTCACTTTGGTATGAAGCTTTTCCTACCAAAGGTGACTTTAACAGTTTAGTCCTATAAAAAATGTAACAATAGTATGTAGTTTTGATGATTGACAAAGTATTTTGATGTTTTACAAAGTAAACTATGTTGCATTGTTTATTGTCATCAAAAAGGGAGAAATTGTTTAGAAATAGGTGAACATATAGATGATTAATAAACTTAACGTGGTTCATCTTATATATAATCAATTAGGTTAATCAAATCCACACACATGAATGCAGACAACCTGTATAGATATGAGAGATTGCAGCAAAGAAAAAACTAATAAATTTATAAATAAAAGATGTAAAAAAAGAAACAACTTAAATGAAGAAGTAAAATAAGAGTAAAAGTAAAGTCCAGGCGGCCCGCACACCACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGCTCTCCGGGTGGGGTGCGGCCGCCTCTTAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTG</genome_strand>
        <mrna_strand>ATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACCAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213456" ref_strand="+" ref_description="SGN-E213456 [cLEC-71-L5]">
      <seq>ttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaagctgggggatccttgtcaccggtgtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29479" stop="27813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29179" g_stop="28988" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28113" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="482" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E213456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29179" e_stop="28988"/>
          <exon e_start="28402" e_stop="28113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCT</genome_strand>
        <mrna_strand>TTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAAGCTGGGGGATCCTTGTCACCGGTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341358" ref_strand="+" ref_description="SGN-E341358 [cTOE-23-G13]">
      <seq>tcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29671" stop="27846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29371" g_stop="28988" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28146" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="641" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E341358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29371" e_stop="28988"/>
          <exon e_start="28402" e_stop="28146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACA</genome_strand>
        <mrna_strand>TCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206864" ref_strand="+" ref_description="SGN-E206864 [cLEC-33-M16]">
      <seq>aaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggctacgcgtagcatctttttcagacaaagaactagaaccagtaaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29595" stop="27848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29295" g_stop="28988" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28148" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="563" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E206864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29295" e_stop="28988"/>
          <exon e_start="28402" e_stop="28148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCA</genome_strand>
        <mrna_strand>AAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212059" ref_strand="+" ref_description="SGN-E212059 [cLEC-75-A9]">
      <seq>ttatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctannagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32840" stop="27850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29509" g_stop="28988" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28150" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="775" r_length="253" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E212059" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29509" e_stop="28988"/>
          <exon e_start="28402" e_stop="28150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGAT</genome_strand>
        <mrna_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTANNAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688476" ref_strand="+" ref_description="SGN-E688476 [t3_tus_50_k14]">
      <seq>cctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaanagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacgnaagggtcaagcatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29720" stop="27861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29420" g_stop="28988" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28160" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="676" r_length="243" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E688476" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29420" e_stop="28988"/>
          <exon e_start="28402" e_stop="28160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAG</genome_strand>
        <mrna_strand>CCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAANAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGNAAGGGTCAAGCATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238260" ref_strand="+" ref_description="SGN-E238260 [cLED-22-F6]">
      <seq>tagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29650" stop="27881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29350" g_stop="28988" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28181" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="585" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E238260" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29350" e_stop="28988"/>
          <exon e_start="28402" e_stop="28181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTA</genome_strand>
        <mrna_strand>TAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550775" ref_strand="+" ref_description="SGN-E550775 [TUS-50-K14]">
      <seq>cctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaanagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29720" stop="27882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29420" g_stop="28988" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28182" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="654" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E550775" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29420" e_stop="28988"/>
          <exon e_start="28402" e_stop="28182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTT</genome_strand>
        <mrna_strand>CCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAANAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203746" ref_strand="+" ref_description="SGN-E203746 [cLEC-17-C18]">
      <seq>caacaactatctctgaaacttgacgcgatgattattgggcttgaatatcgattggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29498" stop="27897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29198" g_stop="28988" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28197" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="417" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E203746" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29198" e_stop="28988"/>
          <exon e_start="28402" e_stop="28197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATAT</genome_strand>
        <mrna_strand>CAACAACTATCTCTGAAACTTGACGCGATGATTATTGGGCTTGAATATCGATTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550830" ref_strand="+" ref_description="SGN-E550830 [TUS-50-O2]">
      <seq>aacccctcacacaagccaattttgatcccaatggtgcttctttagtcatatctaaggatgtatacctaaacagcaataaaaaaacatggatgacaatctacgtaccacgactaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggctcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggctacgcgtagcatctttttcagactaagaactacaaccagtaaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgagcagaagctaacagatgatccaactttgccatttcgagcgattgacaagatgtttgacttgtccttaccaaaaggaacactagatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29716" stop="27906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29416" g_stop="28988" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28206" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="626" r_length="197" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E550830" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29416" e_stop="28988"/>
          <exon e_start="28402" e_stop="28206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGAT</genome_strand>
        <mrna_strand>AACCCCTCACACAAGCCAATTTTGATCCCAATGGTGCTTCTTTAGTCATATCTAAGGATGTATACCTAAACAGCAATAAAAAAACATGGATGACAATCTACGTACCACGACTAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGCTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACGCGTAGCATCTTTTTCAGACTAAGAACTACAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAGCAGAAGCTAACAGATGATCCAACTTTGCCATTTCGAGCGATTGACAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688538" ref_strand="+" ref_description="SGN-E688538 [t3_tus_50_o02]">
      <seq>aacccctcacacaagccaattttgatcccaatggtgcttctttagtcatatctaaggatgtatacctaaacagcaataaaaaaacatggatgacaatctacgtaccacgactaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggctcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggctacgcgtagcatctttttcagactaagaactacaaccagtaaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgagcagaagctaacagatgatccaactttgccatttcgagcgattgacaagatgtttgacttgtccttaccaaaaggaacactagatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29716" stop="27906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29416" g_stop="28988" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28206" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="626" r_length="197" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E688538" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29416" e_stop="28988"/>
          <exon e_start="28402" e_stop="28206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGAT</genome_strand>
        <mrna_strand>AACCCCTCACACAAGCCAATTTTGATCCCAATGGTGCTTCTTTAGTCATATCTAAGGATGTATACCTAAACAGCAATAAAAAAACATGGATGACAATCTACGTACCACGACTAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGCTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACGCGTAGCATCTTTTTCAGACTAAGAACTACAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAGCAGAAGCTAACAGATGATCCAACTTTGCCATTTCGAGCGATTGACAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215149" ref_strand="+" ref_description="SGN-E215149 [cLEC-78-L22]">
      <seq>ttaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagaccaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttccagcaattgataagatggttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29731" stop="27939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29431" g_stop="28988" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28239" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="608" r_length="164" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E215149" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29431" e_stop="28988"/>
          <exon e_start="28402" e_stop="28239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGAC</genome_strand>
        <mrna_strand>TTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACCAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCCAGCAATTGATAAGATGGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205787" ref_strand="+" ref_description="SGN-E205787 [cLEC-20-G1]">
      <seq>tagacagcaataaaaaaacatggatgagaatctacctaccaccacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaataggtatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccataaatgggttaaattggattaaatcaactctagatgaatggattcaaaatcatgctaatttgagtcatgtgtatctttctggatcacgttctggtgggaacttgccttaccatgcagggttacgcgtagcatctttttgagaccaaaaacttgaaccagtgaggatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29650" stop="27951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29350" g_stop="28988" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.90"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="515" r_length="152" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205787" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29350" e_stop="28988"/>
          <exon e_start="28402" e_stop="28251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGAT</genome_strand>
        <mrna_strand>TAGACAGCAATAAAAAAACATGGATGAGAATCTACCTACCACCACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGGTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAAATGGGTTAAATTGGATTAAATCAACTCTAGATGAATGGATTCAAAATCATGCTAATTTGAGTCATGTGTATCTTTCTGGATCACGTTCTGGTGGGAACTTGCCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTGAGACCAAAAACTTGAACCAGTGAGGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214894" ref_strand="+" ref_description="SGN-E214894 [cLEC-78-K8]">
      <seq>ttaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagcttaaagatgatcccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29731" stop="27970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29431" g_stop="28988" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28270" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="577" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E214894" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29431" e_stop="28988"/>
          <exon e_start="28402" e_stop="28270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTT</genome_strand>
        <mrna_strand>TTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTTAAAGATGATCCCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201948" ref_strand="+" ref_description="SGN-E201948 [cLEC-7-O11]">
      <seq>tcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29710" stop="27978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29410" g_stop="28988" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28278" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="548" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E201948" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29410" e_stop="28988"/>
          <exon e_start="28402" e_stop="28278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGAT</genome_strand>
        <mrna_strand>TCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241926" ref_strand="+" ref_description="SGN-E241926 [cLED-27-L2]">
      <seq>tagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaatacgacagaatctgaagagaagctaaaagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29650" stop="27978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29350" g_stop="28988" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28278" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="488" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E241926" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29350" e_stop="28988"/>
          <exon e_start="28402" e_stop="28278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGAT</genome_strand>
        <mrna_strand>TAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATACGACAGAATCTGAAGAGAAGCTAAAAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267441" ref_strand="+" ref_description="SGN-E267441 [cLEI-8-M10]">
      <seq>tagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggctacgcgtagcatctttttcagacaaagaactagaaccagtaaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32833" stop="27997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29502" g_stop="28988" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28297" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="621" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E267441" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29502" e_stop="28988"/>
          <exon e_start="28402" e_stop="28297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</genome_strand>
        <mrna_strand>TAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202607" ref_strand="+" ref_description="SGN-E202607 [cLEC-19-B6]">
      <seq>atttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacagttaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29793" stop="27997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29493" g_stop="28988" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28297" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="612" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E202607" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29493" e_stop="28988"/>
          <exon e_start="28402" e_stop="28297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</genome_strand>
        <mrna_strand>ATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAGTTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204380" ref_strand="+" ref_description="SGN-E204380 [cLEC-13-F7]">
      <seq>aatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29781" stop="27997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29481" g_stop="28988" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28297" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="600" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E204380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29481" e_stop="28988"/>
          <exon e_start="28402" e_stop="28297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</genome_strand>
        <mrna_strand>AATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212853" ref_strand="+" ref_description="SGN-E212853 [cLEC-73-M22]">
      <seq>tgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggaggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatncaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32806" stop="27997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29475" g_stop="28988" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28297" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="594" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E212853" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29475" e_stop="28988"/>
          <exon e_start="28402" e_stop="28297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</genome_strand>
        <mrna_strand>TGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGAGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATNCAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202453" ref_strand="+" ref_description="SGN-E202453 [cLEC-6-C24]">
      <seq>tttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatcttttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataagacagaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32808" stop="27998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29477" g_stop="28988" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28298" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="596" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E202453" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29477" e_stop="28988"/>
          <exon e_start="28402" e_stop="28298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATC-TTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTG</genome_strand>
        <mrna_strand>TTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAAGACAGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205202" ref_strand="+" ref_description="SGN-E205202 [cLEC-16-F6]">
      <seq>atctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29621" stop="27998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29321" g_stop="28988" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28298" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="439" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29321" e_stop="28988"/>
          <exon e_start="28402" e_stop="28298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTG</genome_strand>
        <mrna_strand>ATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207194" ref_strand="+" ref_description="SGN-E207194 [cLEC-30-D11]">
      <seq>tcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggctacgcgtagcatctttttcagacaaagaactagaaccagtaaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29710" stop="28001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29410" g_stop="28988" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28301" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="525" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E207194" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29410" e_stop="28988"/>
          <exon e_start="28402" e_stop="28301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAAT</genome_strand>
        <mrna_strand>TCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202500" ref_strand="+" ref_description="SGN-E202500 [cLEC-6-D7]">
      <seq>ttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaattagagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggctacgcgtagcatctttttcagacaaagaactagaaccagtaaagatcaaagggcttatcttgcatcaaccatatttgagtggaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29679" stop="28011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29379" g_stop="28988" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28311" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="484" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E202500" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29379" e_stop="28988"/>
          <exon e_start="28402" e_stop="28311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAAT</genome_strand>
        <mrna_strand>TTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTAGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTGAGTGGAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205958" ref_strand="+" ref_description="SGN-E205958 [cLEC-20-A20]">
      <seq>gacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaaaggcttatcttgcatcaaccatatttcagtggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29774" stop="28013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29474" g_stop="28988" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28313" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="578" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205958" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29474" e_stop="28988"/>
          <exon e_start="28402" e_stop="28313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAAT-AAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAA</genome_strand>
        <mrna_strand>GACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAAGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214299" ref_strand="+" ref_description="SGN-E214299 [cLEC-77-H6]">
      <seq>tcgtgccgccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29800" stop="28018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29507" g_stop="28988" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28318" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="605" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E214299" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29507" e_stop="28988"/>
          <exon e_start="28402" e_stop="28318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGG</genome_strand>
        <mrna_strand>TCGTGCCGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209174" ref_strand="+" ref_description="SGN-E209174 [cLEC-38-L17]">
      <seq>gaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29717" stop="28020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29417" g_stop="28988" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28320" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="513" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E209174" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29417" e_stop="28988"/>
          <exon e_start="28402" e_stop="28320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGT</genome_strand>
        <mrna_strand>GAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276388" ref_strand="+" ref_description="SGN-E276388 [cLEN-17-G4]">
      <seq>caacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcaaggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatcttgcatcaaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29723" stop="28027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29423" g_stop="28988" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28327" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="512" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E276388" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29423" e_stop="28988"/>
          <exon e_start="28402" e_stop="28327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATA</genome_strand>
        <mrna_strand>CAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205232" ref_strand="+" ref_description="SGN-E205232 [cLEC-16-P2]">
      <seq>catatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaagaactagaaccagtgaagatcaaagggcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29670" stop="28041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29370" g_stop="28988" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28341" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="445" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205232" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29370" e_stop="28988"/>
          <exon e_start="28402" e_stop="28341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATC</genome_strand>
        <mrna_strand>CATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTGAAGATCAAAGGGCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202596" ref_strand="+" ref_description="SGN-E202596 [cLEC-19-J17]">
      <seq>aaaaatttgttcgtccaatttttgacaatccatttttggagcattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcaaggttacgcgtagcatctttttcagacaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29797" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29497" g_stop="28988" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28370" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="544" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E202596" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29497" e_stop="28988"/>
          <exon e_start="28402" e_stop="28370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTT-GAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAAC</genome_strand>
        <mrna_strand>AAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGGAGCATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200376" ref_strand="+" ref_description="SGN-E200376 [cLEC-1-C21]">
      <seq>aatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29781" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29481" g_stop="28988" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28370" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="527" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E200376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29481" e_stop="28988"/>
          <exon e_start="28402" e_stop="28370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTTCAGACAAAAAAC</genome_strand>
        <mrna_strand>AATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214386" ref_strand="+" ref_description="SGN-E214386 [cLEC-77-E8]">
      <seq>gtaattatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggaatcaagtctggtggaaacttggcttacatgcnaggttacgcgtagcatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29812" stop="28082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29513" g_stop="28988" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.88"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28382" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="546" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E214386" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29513" e_stop="28988"/>
          <exon e_start="28402" e_stop="28382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGG-ATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTTT</genome_strand>
        <mrna_strand>GTAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGAATCAAG-TCTGGTGGAAACTTGGCTTA-CATGCNA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203818" ref_strand="+" ref_description="SGN-E203818 [cLEC-17-N4]">
      <seq>tttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacgcctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatcttttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32808" stop="28083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29477" g_stop="28988" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28402" g_stop="28383" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="511" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E203818" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29477" e_stop="28988"/>
          <exon e_start="28402" e_stop="28383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATC-TTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAATTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTTAAACTGGTGGCGTAAATTTACGACAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTAGTTTTCTTTTTTAATCAGTAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTCTGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACCGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAGCATCTTTT</genome_strand>
        <mrna_strand>TTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACGCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209018" ref_strand="+" ref_description="SGN-E209018 [cLEC-38-H1]">
      <seq>catatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29670" stop="28687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29370" g_stop="28988" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E209018" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29370" e_stop="28988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG</genome_strand>
        <mrna_strand>CATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205532" ref_strand="+" ref_description="SGN-E205532 [cLEC-28-F16]">
      <seq>atttttgacaatccatttttgagcattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtnatgtttatctttttggatcaagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29780" stop="28712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29480" g_stop="29012" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205532" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29480" e_stop="29012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAAT-AAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTG</genome_strand>
        <mrna_strand>ATTTTTGACAATCCATTTTTGAGCATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTNATGTTTATCTTTTTGGATCAAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208194" ref_strand="+" ref_description="SGN-E208194 [cLEC-37-A14]">
      <seq>gagcattttggaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatnataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29770" stop="28713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29471" g_stop="29013" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E208194" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29471" e_stop="29013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCT</genome_strand>
        <mrna_strand>GAGC-ATTTTGGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATNATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210433" ref_strand="+" ref_description="SGN-E210433 [cLEC-35-I17]">
      <seq>ttatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29809" stop="28722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29509" g_stop="29022" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E210433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29509" e_stop="29022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGA</genome_strand>
        <mrna_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205285" ref_strand="+" ref_description="SGN-E205285 [cLEC-25-D10]">
      <seq>aaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29797" stop="28723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29497" g_stop="29023" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205285" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29497" e_stop="29023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGG</genome_strand>
        <mrna_strand>AAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208152" ref_strand="+" ref_description="SGN-E208152 [cLEC-37-A23]">
      <seq>tcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29787" stop="28725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29487" g_stop="29025" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E208152" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29487" e_stop="29025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTT</genome_strand>
        <mrna_strand>TCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205377" ref_strand="+" ref_description="SGN-E205377 [cLEC-25-N20]">
      <seq>acccctcacacaagccaatttggatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcgaaattatgctaatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29715" stop="28741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29415" g_stop="29041" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205377" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29415" e_stop="29041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAG</genome_strand>
        <mrna_strand>ACCCCTCACACAAGCCAATTTGGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCGAAATTATGCTAATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200960" ref_strand="+" ref_description="SGN-E200960 [cLEC-5-E15]">
      <seq>ctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29803" stop="28798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29503" g_stop="29098" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E200960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29503" e_stop="29098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGG</genome_strand>
        <mrna_strand>CTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201500" ref_strand="+" ref_description="SGN-E201500 [cLEC-4-D1]">
      <seq>acacaaaccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctaaacagcaataaaaaaacatggatgagaatctacttaccactacaaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29708" stop="28895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29408" g_stop="29195" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E201500" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29408" e_stop="29195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAAC</genome_strand>
        <mrna_strand>ACACAAACCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAAACAGCAATAAAAAAACATGGATGAGAATCTACTTACCACTACAAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719452" ref_strand="+" ref_description="SGN-E719452 [FC07DF10]">
      <seq>gggcgattggcggccaatcggccgaattgataatacatatttctgtgatcaataattatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32866" stop="27887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32566" g_stop="32019" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="577" r_length="548" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32018" i_stop="31436" i_length="583">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31435" g_stop="31220" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="793" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E719452" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32566" e_stop="32019"/>
          <exon e_start="31435" e_stop="31220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACATATTTTTGTGATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAGTTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTCAAACTGGTGGCGTAAATTTACGCCAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTATTTTTTTTTAATCAGTCAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTATGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACTGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAACATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAGAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCAT</genome_strand>
        <mrna_strand>ATAATACATATTTCTGTGATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212919" ref_strand="+" ref_description="SGN-E212919 [cLEC-73-F10]">
      <seq>atttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatggttatctttttggatcaaggtctggtggaaacttggcttaacatggaaggttacgcgtaacatctttttcagaccaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32811" stop="31102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32511" g_stop="32019" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32018" i_stop="31436" i_length="583">
            <donor d_prob="0.926" d_score="0.90"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31435" g_stop="31402" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="528" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E212919" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32511" e_stop="32019"/>
          <exon e_start="31435" e_stop="31402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAAT-AAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAGTTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTCAAACTGGTGGCGTAAATTTACGCCAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTATTTTTTTTTAATCAGTCAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTATGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACTGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAACATCTTTTTCAGACAAAAAACT</genome_strand>
        <mrna_strand>ATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGGTTATCTTTTTGGATCAAGGTCTGGTGGAAACTTGGCTTAACATGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAACATCTTTTTCAGACCAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207684" ref_strand="+" ref_description="SGN-E207684 [cLEC-32-H18]">
      <seq>ataattatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggttacgcgtagcatcttttttcagacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32844" stop="28074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32544" g_stop="32019" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32018" i_stop="31436" i_length="583">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31435" g_stop="31406" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="557" r_length="31" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E207684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32544" e_stop="32019"/>
          <exon e_start="31435" e_stop="31406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAGTTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTCAAACTGGTGGCGTAAATTTACGCCAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTATTTTTTTTTAATCAGTCAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTATGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACTGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAACATC-TTTTTCAGACAAAA</genome_strand>
        <mrna_strand>ATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTTCAGACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208991" ref_strand="+" ref_description="SGN-E208991 [cLEC-38-K22]">
      <seq>ttatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcttgcagttaccatgatgccatagatgggtttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcaaggttacgcgtagcatctttttcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32840" stop="28078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32540" g_stop="32019" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32018" i_stop="31436" i_length="583">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31435" g_stop="31411" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="547" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E208991" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32540" e_stop="32019"/>
          <exon e_start="31435" e_stop="31411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGG-TTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAGGTACTTTGTTAGAGTTATTTGGATTCAAGATTTAAAATTGATACATTCAATTCTCTATATATTTATGTTCATTATAGTAACAAAGTATCTTAGTTTAACTGGATACTAAGTTTTTGAATTTTATGATTTCAAATTAAAATATCATGATGTGTAGTATTTTCAAACTGGTGGCGTAAATTTACGCCAAAAAAGGTTTGGGATAACGGTATCATTTACTTCCTTTCTTTCAATTTATATGATTTATTTTTTTTTAATCAGTCAAAAAAGAGTTATATCACATTTTCTTTGTTGACAAATATTTAACAATATTGTCAAATAGTTTATGCTTGTTGAGTCCCACTTATTTGGCAAGAAGTCTACATTAGGTGTACTCTTTTTAAGGTTAGTTTGGTAACATTGTAAAGTATTCCTTTTAAGTTTCTTTTAACTATGTGCTCAATCAAACTATATATTAGGTGAGGAGGGAATAATAAGGAGATTAACTAGCTTTGATTAGAGTACATCCCTTTTATTAACTGTCTAAATTTATATGTATTGAACTAATTATAATTTTATGGGCTAATTTTGTCACCCTTACCTACAGGGTTACGCGTAACATCTTTTTCAGA</genome_strand>
        <mrna_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCTTGCAG-TTACCATGATGCCATAGATGGGTTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTACGCGTAGCATCTTTTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209018" ref_strand="+" ref_description="SGN-E209018 [cLEC-38-H1]">
      <seq>catatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttctggtggaaacttggcttaccatgcagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32701" stop="31718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32401" g_stop="32019" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E209018" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32401" e_stop="32019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG</genome_strand>
        <mrna_strand>CATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208194" ref_strand="+" ref_description="SGN-E208194 [cLEC-37-A14]">
      <seq>gagcattttggaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatnataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32798" stop="31744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32501" g_stop="32044" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E208194" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32501" e_stop="32044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCT</genome_strand>
        <mrna_strand>GAGCATTTTGGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATNATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204258" ref_strand="+" ref_description="SGN-E204258 [cLEC-13-D6]">
      <seq>caaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32829" stop="31749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32529" g_stop="32049" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E204258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32529" e_stop="32049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAA</genome_strand>
        <mrna_strand>CAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210211" ref_strand="+" ref_description="SGN-E210211 [cLEC-40-B11]">
      <seq>atttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaaaggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatctttttggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32824" stop="31750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32524" g_stop="32050" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E210211" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32524" e_stop="32050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCA</genome_strand>
        <mrna_strand>ATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAAAGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201251" ref_strand="+" ref_description="SGN-E201251 [cLEC-10-M16]">
      <seq>ttatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgctaatttgagtaatgtttatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32840" stop="31756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32540" g_stop="32056" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E201251" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32540" e_stop="32056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTT</genome_strand>
        <mrna_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205377" ref_strand="+" ref_description="SGN-E205377 [cLEC-25-N20]">
      <seq>acccctcacacaagccaatttggatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcgaaattatgctaatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32746" stop="31772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32446" g_stop="32072" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205377" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32446" e_stop="32072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAG</genome_strand>
        <mrna_strand>ACCCCTCACACAAGCCAATTTGGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCGAAATTATGCTAATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202165" ref_strand="+" ref_description="SGN-E202165 [cLEC-7-D15]">
      <seq>aattatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaattggattaaatcaactcaagatgaatggattcaaaattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32842" stop="31780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32542" g_stop="32080" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E202165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32542" e_stop="32080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCT</genome_strand>
        <mrna_strand>AATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398024" ref_strand="+" ref_description="SGN-E398024 [TUS-38-K14]">
      <seq>aatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttcctgcagcttacaatgatgccatagatgggttaaattggatgaaatcaactcaggacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32825" stop="31799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32525" g_stop="32099" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E398024" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32525" e_stop="32099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGA</genome_strand>
        <mrna_strand>AATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACAATGATGCCATAGATGGGTTAAATTGGATGAAATCAACTCAGGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699133" ref_strand="+" ref_description="SGN-E699133 [FA08DB01]">
      <seq>cgatatatctgagatatcagatatattctgaaatacatatacataagaagagatgtgaacgagaaaagagagtacggagtgagataaagaaagacaagttaaaaagtaagaaaaatatgaattcattgcatctcaaaaaaaaaaaattacccataattattgcaattttcaatataataattcctagtggtcacttgccagaaatattcttcttcttcttatatataacccctaatatatagctaacttcctataatacatatttttgggatcaataattatgtctagccaaaaatttgttcgcccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaagggaacttctttagtcatatctaaggatgtagacctaaaccgcaataaaaaaacctggatgagaatctacgcaccacgacaaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtctcctttcatgttaatagttatggttcggatctattttgccaacaactatctgagaaccttgacccgatgattattgcccttgaatatcgtttggcccctgaaaatccacttcctgcagcttacaatgatgccatagatgggttaaattggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33116" stop="31816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32818" g_stop="32116" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E699133" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32818" e_stop="32116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATATCTGAGATATCAGATATATTCTGAAATACATATACATAAGAAGAGATGTGAACGAGAAAAGAGCGTACAGAGTGAGATAAAGAAAGACAAGTTAAAAAGTAAGAAAAATATGAATTCATTGCATCTCAAAAAAAAAAAATTACACATAATTATTGCAATTTTCAATATAATAATTCCTAGTTGTCACTTGTCAGTAATATTCTTCTTCTTCTTATATATAACCCCTAATATATAGCTAACTTCCTATAATACATATTTTTGTGATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATT</genome_strand>
        <mrna_strand>CGATATATCTGAGATATCAGATATATTCTGAAATACATATACATAAGAAGAGATGTGAACGAGAAAAGAGAGTACGGAGTGAGATAAAGAAAGACAAGTTAAAAAGTAAGAAAAATATGAATTCATTGCATCTCAAAAAAAAAAAATTACCCATAATTATTGCAATTTTCAATATAATAATTCCTAGTGGTCACTTGCCAGAAATATTCTTCTTCTTCTTATATATAACCCCTAATATATAGCTAACTTCCTATAATACATATTTTTGGGATCAATAATTATGTCTAGCCAAAAATTTGTTCGCCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAAGGGAACTTCTTTAGTCATATCTAAGGATGTAGACCTAAACCGCAATAAAAAAACCTGGATGAGAATCTACGCACCACGACAAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTCCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGCCAACAACTATCTGAGAACCTTGACCCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCCACTTCCTGCAGCTTACAATGATGCCATAGATGGGTTAAATTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205545" ref_strand="+" ref_description="SGN-E205545 [cLEC-21-C3]">
      <seq>ttaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtnnncaactatctgagaaacttgacgcgatgattattgcccttgaatattcgttggcccctgaaaatcgacttcctgcagcttacgatgatgccatagatgggttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32762" stop="31823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32462" g_stop="32123" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E205545" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32462" e_stop="32123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAA</genome_strand>
        <mrna_strand>TTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTNNNCAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATTCGTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200960" ref_strand="+" ref_description="SGN-E200960 [cLEC-5-E15]">
      <seq>ctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagcttacgatgatgccatagatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32834" stop="31829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32534" g_stop="32129" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E200960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32534" e_stop="32129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGG</genome_strand>
        <mrna_strand>CTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214585" ref_strand="+" ref_description="SGN-E214585 [cLEC-79-L20]">
      <seq>tcaataattatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttccggcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32847" stop="31848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32547" g_stop="32148" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E214585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32547" e_stop="32148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTT</genome_strand>
        <mrna_strand>TCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393240" ref_strand="+" ref_description="SGN-E393240 [TUS-38-C8]">
      <seq>attatgtctagccaaaaatttgttcgtccaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaaatcgacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32841" stop="31857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32541" g_stop="32157" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E393240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32541" e_stop="32157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTC</genome_strand>
        <mrna_strand>ATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209865" ref_strand="+" ref_description="SGN-E209865 [cLEC-52-C18]">
      <seq>ttatgtctagccaaaaatttgttcgtcaaatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaaccccttacacaagccaattttgatcccaatggtactagtttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgataatagttatgggtcggatctattctgccaacaactatctgagaaacttgacgcgaagataattgcccttgaatatcgctgggcccctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32840" stop="31865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32540" g_stop="32165" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E209865" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32540" e_stop="32165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAA</genome_strand>
        <mrna_strand>TTATGTCTAGCCAAAAATTTGTTCGTCAAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTTACACAAGCCAATTTTGATCCCAATGGTACTAGTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGATAATAGTTATGGGTCGGATCTATTCTGCCAACAACTATCTGAGAAACTTGACGCGAAGATAATTGCCCTTGAATATCGCTGGGCCCCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210207" ref_strand="+" ref_description="SGN-E210207 [cLEC-40-M12]">
      <seq>tttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattgccaggtattttctactatcatggcggaggctttgtcttctttcatgttaatagatatgggtcggatctattttgtcaacaactatctgagaaacttgacgcgatgattattgcccttgaatatcgtttggcccctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32810" stop="31866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32510" g_stop="32166" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E210207" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32510" e_stop="32166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAA</genome_strand>
        <mrna_strand>TTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGGTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGATATGGGTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290547" ref_strand="+" ref_description="SGN-E290547 [cLES-20-K16]">
      <seq>aatttttgacaatccatttttgaacattgaagaattaccaaatgatacaattaaacgtcaacctgaacccctcacacaagccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctagacagcaataaaaaaacatggatgagaatctacgtaccacgacgaataattgcaaatcatgacgatgataaattggcagttattttctactatcatggcggaggctttggcttctttcatgttaatagttatgggtcggatctattttgtcaacaactatctgagaaacttgacgcgaatgattattggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32812" stop="31887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32512" g_stop="32187" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E290547" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32512" e_stop="32187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCG-ATGATTATTGCCCTTG</genome_strand>
        <mrna_strand>AATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGGCAGTTATTTTCTACTATCATGGCGGAGGCTTTGGCTTCTTTCATGTTAATAGTTATGGGTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGAATGATTATTGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201500" ref_strand="+" ref_description="SGN-E201500 [cLEC-4-D1]">
      <seq>acacaaaccaattttgatcccaatggtacttctttagtcatatctaaggatgtagacctaaacagcaataaaaaaacatggatgagaatctacttaccactacaaataattgcaaatcatgacgatgataaattgccagttattttctactatcatggcggaggctttgtcttctttcatgttaatagttatggttcggatctattttgtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32739" stop="31926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32439" g_stop="32226" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E201500" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32439" e_stop="32226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAAC</genome_strand>
        <mrna_strand>ACACAAACCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAAACAGCAATAAAAAAACATGGATGAGAATCTACTTACCACTACAAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211645" ref_strand="+" ref_description="SGN-E211645 [cLEC-67-N11]">
      <seq>gctgtggaaaggtacaaggctcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaattattgagttgggattangaggaactaaactagnttacacacctttggaacaaatctgaagctacatcagttgactatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59122" stop="57847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58822" g_stop="58147" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E211645" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58822" e_stop="58147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGAAAGGTACAAGGCTCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCATATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGACAGGAGGGGAAGCATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCACCTAGTCAATGGAATAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTAATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAGAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTGTTGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTGAATTTGCTAGATAACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTAGTGAGTTCGGATTACGTGGCACTAAACCAGTTAACACACCTTTGGAAACAAATCTGAAGCTTACATCAGTTGACTGTGATG</genome_strand>
        <mrna_strand>GCTGTGGAAAGGTACAAGGCTCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTATTGAGTTGGGATTANGAGGAACTAAACTAGNTTACACACCTTTGG-AACAAATCTGAAGC-TACATCAGTTGACTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551307" ref_strand="+" ref_description="SGN-E551307 [TUS-50-P10]">
      <seq>tcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59102" stop="57928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58802" g_stop="58228" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E551307" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58802" e_stop="58228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCATATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGACAGGAGGGGAAGCATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCACCTAGTCAATGGAATAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTAATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAGAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTGTTGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTGAATTTGCTAGATAACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</genome_strand>
        <mrna_strand>TCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688557" ref_strand="+" ref_description="SGN-E688557 [t3_tus_50_p10]">
      <seq>gacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="-" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59100" stop="57928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58800" g_stop="58228" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="-" ref_id="SGN-E688557" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58800" e_stop="58228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCATATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGACAGGAGGGGAAGCATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCACCTAGTCAATGGAATAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTAATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAGAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTGTTGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTGAATTTGCTAGATAACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</genome_strand>
        <mrna_strand>GACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355163" ref_strand="+" ref_description="SGN-E355163 [cTOS-18-G14]">
      <seq>tctggtggaaacttggcttaccatgcagggttacgcgtagcatctttttcagacaaaaaactagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttctaggattgagttagttctaataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="+" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65741" stop="66958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66051" g_stop="66665" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="643" r_length="615" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="+" ref_id="SGN-E355163" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66051" e_stop="66665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTAGTTCTAATATCTACTA</genome_strand>
        <mrna_strand>GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207692" ref_strand="+" ref_description="SGN-E207692 [cLEC-32-N12]">
      <seq>tagaaccagtgaagatcaaagggcttatcttgcatcaaccatatttcagtggaaaaaataggacagaatctgaagagaagctaaaagatgatccaactttgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaagctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttctaggattgagttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="+" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65784" stop="66952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66084" g_stop="66652" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="+" ref_id="SGN-E207692" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66084" e_stop="66652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTAGTT</genome_strand>
        <mrna_strand>TAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAAGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393457" ref_strand="+" ref_description="SGN-E393457 [TUS-38-C8](-)">
      <seq>gaaaaaataggacagaatctgaagagaagctaaaagatgatccaactctgccatttcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatattccaacccattacttaacggagggtcaaagcatttagatgatatgatcacacgaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttctaggattgagttaaaaaaaaaaaaaaaaaaactcgagactaggggggggcccggtacccaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="+" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65835" stop="66949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66135" g_stop="66649" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="534"/>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="+" ref_id="SGN-E393457" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66135" e_stop="66649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTA</genome_strand>
        <mrna_strand>GAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTCTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393486" ref_strand="+" ref_description="SGN-E393486 [TUS-38-K14](-)">
      <seq>aaaaaattgggcagaattttgaagagaaggtaaaagatgatccaactttgccaattcaagcaattgataagatgtttgacttgtccttaccaaaaggaacactagatcatgatcatgaatatttcaacccattaattaacggagggtcaaagcatttagatgatatgatcacacgagggtgggggatccttgtcaccggggtttttgaagatcctttaattgatgcctcgggcaaatttggtgattttattgaaaagaaaggtgtaaaaactttcaaggtttttggagatggttaccatgttattgagttgtttgagccatttaagggtgcagttttatttgatgccattagggatttcatatttggtaataaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggggggtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttttcatgaataaaagtttttagggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="+" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65836" stop="66945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66136" g_stop="66645" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="539"/>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="+" ref_id="SGN-E393486" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66136" e_stop="66645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAGGACAGAA-TCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGA</genome_strand>
        <mrna_strand>AAAAAATTGGGCAGAATTTTGAAGAGAAGGTAAAAGATGATCCAACTTTGCCAATTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTTCAACCCATTAATTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGGTGGGGGATCCTTGTCACCGGGGTTTTTGAAGATCCTTTAATTGATGCCTCGGGCAAATTTGGTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGGTTTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATTTAAGGGTGCAGTTTTATTTGATGCCATTAGGGATTTCATATTTGGTAATAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGGGGGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTTTCATGAATAAAAGTTTTTAGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715187" ref_strand="+" ref_description="SGN-E715187 [FB13CD05]">
      <seq>gaggctgggggatccttgtcaccggtgtctctgaagatcctttaatcgatgcctcgcgcaactttgctgattttattgaaaagaaaggtgtaaaaactttcaagctctttggagatggttaccatgttattgagttgtttgagccatctaaggctgcagtcttatttgatgccattagggatctcatatctgctactaaaaattaaaagtattgagtttgttttgttatatttccttttgtgcaaataagagaggagtgtatagtatgcattcctttgtgtgtaagattactttaagttgttatatttttctcatgaataaaagtttttaggattgagttagttctaatatctactaaatttgtaagtttaaagacataatatcatcacccaaaaattagttgcaaagcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0097H19-ll1l6/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLe0097H19.1" temp_strand="+" temp_description="C12SLe0097H19.1  AC216403.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0097H19 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66009" stop="67024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66309" g_stop="66717" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="435"/>
      <MATCH_line gen_id="C12SLe0097H19.1" gen_strand="+" ref_id="SGN-E715187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0097H19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66309" e_stop="66717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</genome_strand>
        <mrna_strand>GAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>85</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="25831" PGL_stop="25406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25831" e_stop="25406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="25831" e_stop="25406" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25831" stop="25406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTAGAAAACCCTTCGGTGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAATATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGATAGCAAAACTGAAGCTGAAGACCACCAAATTCAACTCTGTTAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGAAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTACGAATTTCTCTCTTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTAAAAAAT</gDNA_template>
            <first_frame> H  Q  D  L  R  R  K  P  F  G  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  S  A  K  Q  R  A  T  T  K  *  Y  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  *  Q  N  *  S  *  R  P  P  N  S  T  L  L  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  V  V  M  A  G  F  L  T  T  N  F  S  L  F  F  S  L  L  A  A  E  K  L  S  L  K  N </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  V  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  V  P  N  N  E  Q  Q  Q  N  N  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  E  D  H  Q  I  Q  L  C  *  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  E  I  A  I  *  S  W  L  L  W  L  D  F  *  L  R  I  S  L  F  F  S  L  F  W  L  L  K  N  S  L  *  K   </second_frame>
            <third_frame>   P  R  F  T  *  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  K  C  Q  T  T  S  N  N  K  I  I  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  I  A  K  L  K  L  K  T  T  K  F  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  K  S  Q  F  E  V  G  C  Y  G  W  I  F  D  Y  E  F  L  S  F  F  L  S  F  G  C  *  K  T  L  S  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0097H19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="32818" PGL_stop="27736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29513" e_stop="28988"/>
            <exon e_start="28402" e_stop="27736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="0.975" e_score="0.996"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29513" e_stop="28988" e_length="526"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="0.975">
            <gDNA_intron_boundary i_start="28987" i_stop="28403" i_length="585"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="28402" e_stop="27736" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29513" stop="28988"/>
              <exon start="28402" stop="28382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29509" stop="28988"/>
              <exon start="28402" stop="27977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29509" stop="28988"/>
              <exon start="28402" stop="28150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29509" stop="29022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="28988"/>
              <exon start="28402" stop="28318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29503" stop="29098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29502" stop="28988"/>
              <exon start="28402" stop="28297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29497" stop="28988"/>
              <exon start="28402" stop="28370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29497" stop="29023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29493" stop="28988"/>
              <exon start="28402" stop="28297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29487" stop="29025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29481" stop="28988"/>
              <exon start="28402" stop="28297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29481" stop="28988"/>
              <exon start="28402" stop="28370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29480" stop="29012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29477" stop="28988"/>
              <exon start="28402" stop="28298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29477" stop="28988"/>
              <exon start="28402" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29475" stop="28988"/>
              <exon start="28402" stop="28297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29474" stop="28988"/>
              <exon start="28402" stop="28313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29471" stop="29013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29431" stop="28988"/>
              <exon start="28402" stop="28239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29431" stop="28988"/>
              <exon start="28402" stop="28270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29423" stop="28988"/>
              <exon start="28402" stop="28327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29420" stop="28988"/>
              <exon start="28402" stop="28160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29420" stop="28988"/>
              <exon start="28402" stop="28182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29417" stop="28988"/>
              <exon start="28402" stop="28320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29416" stop="28988"/>
              <exon start="28402" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29416" stop="28988"/>
              <exon start="28402" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29415" stop="29041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29410" stop="28988"/>
              <exon start="28402" stop="28278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29410" stop="28988"/>
              <exon start="28402" stop="28301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29408" stop="29195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29379" stop="28988"/>
              <exon start="28402" stop="28311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29371" stop="28988"/>
              <exon start="28402" stop="28146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29370" stop="28988"/>
              <exon start="28402" stop="28341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29370" stop="28988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29350" stop="28988"/>
              <exon start="28402" stop="28181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29350" stop="28988"/>
              <exon start="28402" stop="28251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29350" stop="28988"/>
              <exon start="28402" stop="28278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29321" stop="28988"/>
              <exon start="28402" stop="28298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29295" stop="28988"/>
              <exon start="28402" stop="28148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29257" stop="28988"/>
              <exon start="28402" stop="27790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29241" stop="28988"/>
              <exon start="28402" stop="28033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29204" stop="28988"/>
              <exon start="28402" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29198" stop="28988"/>
              <exon start="28402" stop="28197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29179" stop="28988"/>
              <exon start="28402" stop="27949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29179" stop="28988"/>
              <exon start="28402" stop="28113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29131" stop="28988"/>
              <exon start="28402" stop="27996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29109" stop="28988"/>
              <exon start="28402" stop="28013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29061" stop="28988"/>
              <exon start="28402" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29015" stop="28988"/>
              <exon start="28402" stop="27788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28369" stop="27801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28317" stop="27808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28144" stop="27736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCTATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCGGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTAATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG : GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</gDNA_template>
            <first_frame> L  I  M  S  S  Q  K  F  V  R  P  I  F  D  N  L  F  L  N  I  E  E  L  P  N  D  T  I  K  R  Q  P  E  P  L  T  Q  A  N  F  D  P  N  G  T  S  L  V  I  S  K  D  V  D  L  D  S  N  K  K  T  W  M  R  I  Y  V  P  R  R  I  I  A  N  H  D  D  D  K  L  P  V  I  F  Y  Y  H  G  G  G  F  V  F  F  H  V  N  S  Y  G  S  D  L  F  C  Q  Q  L  S  E  K  L  D  A  M  I  I  A  L  E  Y  R  L  A  P  E  N  R  L  P  A  A  Y  D  D  A  I  D  G  L  N  W  I  K  S  T  Q  D  E  W  I  Q  N  Y  A  N  L  S  N  V  Y  L  F  G  S  S  S  G  G  N  L  A  Y  H  A   : G  L  R  V  A  S  F  S  D  K  K  L  E  P  V  K  I  K  G  L  I  L  H  Q  P  Y  F  S  G  K  N  R  T  E  S  E  E  K  L  K  D  D  P  T  L  P  F  Q  A  I  D  K  M  F  D  L  S  L  P  K  G  T  L  D  H  D  H  E  Y  S  N  P  L  L  N  G  G  S  K  H  L  D  D  M  I  T  R  G  W  G  I  L  V  T  G  V  S  E  D  P  L  I  D  A  S  R  N  F  A  D  F  I  E  K  K  G  V  K  T  F  K  L  F  G  D  G  Y  H  V  I  E  L  F  E  P  S  K  A  A  V  L  F  D  A  I  R  D  L  I  S  A  T  K  N  *  K  Y  *  V  C  F  V  I  F  P  F  V  Q  I  R  E  E  C  I  V  C  I  P  L  C  V  R  L  L  *  V  V  I  F  F  S  *  I  K  V  S  R  I  E  L  V  L  I  S  T  K  F  V  S  L  K  T  *  Y  H  H  P  K  I  S  C  K   </first_frame>
            <second_frame>  *  L  C  L  A  K  N  L  F  V  Q  F  L  T  I  Y  F  *  T  L  K  N  Y  Q  M  I  Q  L  N  V  N  L  N  P  S  H  K  P  I  L  I  P  M  V  L  L  *  S  Y  L  R  M  *  T  *  T  A  I  K  K  H  G  *  E  S  T  Y  H  D  E  *  L  Q  I  M  T  M  I  N  C  Q  L  F  S  T  I  M  A  E  A  L  S  S  F  M  L  I  V  M  V  R  I  Y  F  V  N  N  Y  L  R  N  L  T  R  *  L  L  P  L  N  I  V  W  P  L  K  I  D  F  R  Q  L  T  M  M  P  *  M  G  *  I  G  L  N  Q  L  K  M  N  G  F  K  I  M  L  I  *  V  M  F  I  F  L  D  Q  V  L  V  E  T  W  L  T  M  Q  :  G  Y  A  *  H  L  F  Q  T  K  N  *  N  Q  *  R  S  K  G  L  S  C  I  N  H  I  S  V  E  K  I  G  Q  N  L  K  R  S  *  K  M  I  Q  L  C  H  F  K  Q  L  I  R  C  L  T  C  P  Y  Q  K  E  H  *  I  M  I  M  N  I  P  T  H  Y  L  T  E  G  Q  S  I  *  M  I  *  S  H  E  A  G  G  S  L  S  P  V  S  L  K  I  L  *  S  M  P  R  A  T  L  L  I  L  L  K  R  K  V  *  K  L  S  S  S  L  E  M  V  T  M  L  L  S  C  L  S  H  L  R  L  Q  S  Y  L  M  P  L  G  I  S  Y  L  L  L  K  I  K  S  I  E  F  V  L  L  Y  F  L  L  C  K  *  E  R  S  V  *  Y  A  F  L  C  V  *  D  Y  F  K  L  L  Y  F  S  H  E  *  K  F  L  G  L  S  *  F  *  Y  L  L  N  L  *  V  *  R  H  N  I  I  T  Q  K  L  V  A  K  </second_frame>
            <third_frame>   N  Y  V  *  P  K  I  C  S  S  N  F  *  Q  S  I  F  E  H  *  R  I  T  K  *  Y  N  *  T  S  T  *  T  P  H  T  S  Q  F  *  S  Q  W  Y  F  F  S  H  I  *  G  C  R  P  R  Q  Q  *  K  N  M  D  E  N  L  R  T  T  T  N  N  C  K  S  *  R  *  *  I  A  S  Y  F  L  L  S  W  R  R  L  C  L  L  S  C  *  *  L  W  F  G  S  I  L  S  T  T  I  *  E  T  *  R  D  D  Y  C  P  *  I  S  F  G  P  *  K  S  T  S  G  S  L  R  *  C  H  R  W  V  K  L  D  *  I  N  S  R  *  M  D  S  K  L  C  *  F  E  *  C  L  S  F  W  I  K  F  W  W  K  L  G  L  P  C  R :   V  T  R  S  I  F  F  R  Q  K  T  R  T  S  E  D  Q  R  A  Y  L  A  S  T  I  F  Q  W  K  K  *  D  R  I  *  R  E  A  K  R  *  S  N  F  A  I  S  S  N  *  *  D  V  *  L  V  L  T  K  R  N  T  R  S  *  S  *  I  F  Q  P  I  T  *  R  R  V  K  A  F  R  *  Y  D  H  T  R  L  G  D  P  C  H  R  C  L  *  R  S  F  N  R  C  L  A  Q  L  C  *  F  Y  *  K  E  R  C  K  N  F  Q  A  L  W  R  W  L  P  C  Y  *  V  V  *  A  I  *  G  C  S  L  I  *  C  H  *  G  S  H  I  C  Y  *  K  L  K  V  L  S  L  F  C  Y  I  S  F  C  A  N  K  R  G  V  Y  S  M  H  S  F  V  C  K  I  T  L  S  C  Y  I  F  L  M  N  K  S  F  *  D  *  V  S  S  N  I  Y  *  I  C  K  F  K  D  I  I  S  S  P  K  N  *  L  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29513" stop="28988"/>
                    <exon start="28402" stop="27939"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMSSQKFVRPIFDNLFLNIEELPNDTIKRQPEPLTQANFDPNGTSLVISKDVDLDSNKKTWMRIYVPRRIIANHDDDKLPVIFYYHGGGFVFFHVNSYGSDLFCQQLSEKLDAMIIALEYRLAPENRLPAAYDDAIDGLNWIKSTQDEWIQNYANLSNVYLFGSSSGGNLAYHAGLRVASFSDKKLEPVKIKGLILHQPYFSGKNRTESEEKLKDDPTLPFQAIDKMFDLSLPKGTLDHDHEYSNPLLNGGSKHLDDMITRGWGILVTGVSEDPLIDASRNFADFIEKKGVKTFKLFGDGYHVIELFEPSKAAVLFDAIRDLISATKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32818" e_stop="32019"/>
            <exon e_start="28402" e_stop="27736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="0.975" e_score="0.967"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="32818" e_stop="32019" e_length="800"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="0.975">
            <gDNA_intron_boundary i_start="32018" i_stop="28403" i_length="3616"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="28402" e_stop="27736" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32818" stop="32116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32548" stop="32019"/>
              <exon start="28402" stop="28067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32547" stop="32148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32542" stop="32080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32541" stop="32157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32540" stop="32056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32540" stop="32165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32529" stop="32049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32525" stop="32099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32524" stop="32050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32512" stop="32187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32510" stop="32166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32501" stop="32044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32462" stop="32123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32446" stop="32072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32439" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32401" stop="32019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28369" stop="27801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28318" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28317" stop="27808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28144" stop="27736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATATATCTGAGATATCAGATATATTCTGAAATACATATACATAAGAAGAGATGTGAACGAGAAAAGAGCGTACAGAGTGAGATAAAGAAAGACAAGTTAAAAAGTAAGAAAAATATGAATTCATTGCATCTCAAAAAAAAAAAATTACACATAATTATTGCAATTTTCAATATAATAATTCCTAGTTGTCACTTGTCAGTAATATTCTTCTTCTTCTTATATATAACCCCTAATATATAGCTAACTTCCTATAATACATATTTTTGTGATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG : GGTTACGCGTAGCATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTCTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</gDNA_template>
            <first_frame> T  Y  I  *  D  I  R  Y  I  L  K  Y  I  Y  I  R  R  D  V  N  E  K  R  A  Y  R  V  R  *  R  K  T  S  *  K  V  R  K  I  *  I  H  C  I  S  K  K  K  N  Y  T  *  L  L  Q  F  S  I  *  *  F  L  V  V  T  C  Q  *  Y  S  S  S  S  Y  I  *  P  L  I  Y  S  *  L  P  I  I  H  I  F  V  I  N  N  Y  V  *  P  K  I  C  S  S  N  F  *  Q  S  I  F  E  H  *  R  I  T  K  *  Y  N  *  T  S  T  *  T  P  H  T  S  Q  F  *  S  Q  W  Y  F  F  S  H  I  *  G  C  R  P  R  Q  Q  *  K  N  M  D  E  N  L  R  T  T  T  N  N  C  K  S  *  R  *  *  I  A  S  Y  F  L  L  S  W  R  R  L  C  L  L  S  C  *  *  L  W  F  G  S  I  L  S  T  T  I  *  E  T  *  R  D  D  Y  C  P  *  I  S  F  G  P  *  K  S  T  S  C  S  L  R  *  C  H  R  W  V  K  L  D  *  I  N  S  R  *  M  D  S  K  L  C  *  F  E  *  C  L  S  F  W  I  K  F  W  W  K  L  G  L  P  C  R :   V  T  R  S  I  F  F  R  Q  K  T  R  T  S  E  D  Q  R  A  Y  L  A  S  T  I  F  Q  W  K  K  *  D  R  I  *  R  E  A  K  R  *  S  N  F  A  I  S  S  N  *  *  D  V  *  L  V  L  T  K  R  N  T  R  S  *  S  *  I  F  Q  P  I  T  *  R  R  V  K  A  F  R  *  Y  D  H  T  R  L  G  D  P  C  H  R  C  L  *  R  S  F  N  R  C  L  A  Q  L  C  *  F  Y  *  K  E  R  C  K  N  F  Q  A  L  W  R  W  L  P  C  Y  *  V  V  *  A  I  *  G  C  S  L  I  *  C  H  *  G  S  H  I  C  Y  *  K  L  K  V  L  S  L  F  C  Y  I  S  F  C  A  N  K  R  G  V  Y  S  M  H  S  F  V  C  K  I  T  L  S  C  Y  I  F  L  M  N  K  S  F  *  D  *  V  S  S  N  I  Y  *  I  C  K  F  K  D  I  I  S  S  P  K  N  *  L  Q  S </first_frame>
            <second_frame>  H  I  S  E  I  S  D  I  F  *  N  T  Y  T  *  E  E  M  *  T  R  K  E  R  T  E  *  D  K  E  R  Q  V  K  K  *  E  K  Y  E  F  I  A  S  Q  K  K  K  I  T  H  N  Y  C  N  F  Q  Y  N  N  S  *  L  S  L  V  S  N  I  L  L  L  L  I  Y  N  P  *  Y  I  A  N  F  L  *  Y  I  F  L  *  S  I  I  M  S  S  Q  K  F  V  R  P  I  F  D  N  P  F  L  N  I  E  E  L  P  N  D  T  I  K  R  Q  P  E  P  L  T  Q  A  N  F  D  P  N  G  T  S  L  V  I  S  K  D  V  D  L  D  S  N  K  K  T  W  M  R  I  Y  V  P  R  R  I  I  A  N  H  D  D  D  K  L  P  V  I  F  Y  Y  H  G  G  G  F  V  F  F  H  V  N  S  Y  G  S  D  L  F  C  Q  Q  L  S  E  K  L  D  A  M  I  I  A  L  E  Y  R  L  A  P  E  N  R  L  P  A  A  Y  D  D  A  I  D  G  L  N  W  I  K  S  T  Q  D  E  W  I  Q  N  Y  A  D  L  S  N  V  Y  L  F  G  S  S  S  G  G  N  L  A  Y  H  A   : G  L  R  V  A  S  F  S  D  K  K  L  E  P  V  K  I  K  G  L  I  L  H  Q  P  Y  F  S  G  K  N  R  T  E  S  E  E  K  L  K  D  D  P  T  L  P  F  Q  A  I  D  K  M  F  D  L  S  L  P  K  G  T  L  D  H  D  H  E  Y  S  N  P  L  L  N  G  G  S  K  H  L  D  D  M  I  T  R  G  W  G  I  L  V  T  G  V  S  E  D  P  L  I  D  A  S  R  N  F  A  D  F  I  E  K  K  G  V  K  T  F  K  L  F  G  D  G  Y  H  V  I  E  L  F  E  P  S  K  A  A  V  L  F  D  A  I  R  D  L  I  S  A  T  K  N  *  K  Y  *  V  C  F  V  I  F  P  F  V  Q  I  R  E  E  C  I  V  C  I  P  L  C  V  R  L  L  *  V  V  I  F  F  S  *  I  K  V  S  R  I  E  L  V  L  I  S  T  K  F  V  S  L  K  T  *  Y  H  H  P  K  I  S  C  K   </second_frame>
            <third_frame>   I  Y  L  R  Y  Q  I  Y  S  E  I  H  I  H  K  K  R  C  E  R  E  K  S  V  Q  S  E  I  K  K  D  K  L  K  S  K  K  N  M  N  S  L  H  L  K  K  K  K  L  H  I  I  I  A  I  F  N  I  I  I  P  S  C  H  L  S  V  I  F  F  F  F  L  Y  I  T  P  N  I  *  L  T  S  Y  N  T  Y  F  C  D  Q  *  L  C  L  A  K  N  L  F  V  Q  F  L  T  I  H  F  *  T  L  K  N  Y  Q  M  I  Q  L  N  V  N  L  N  P  S  H  K  P  I  L  I  P  M  V  L  L  *  S  Y  L  R  M  *  T  *  T  A  I  K  K  H  G  *  E  S  T  Y  H  D  E  *  L  Q  I  M  T  M  I  N  C  Q  L  F  S  T  I  M  A  E  A  L  S  S  F  M  L  I  V  M  V  R  I  Y  F  V  N  N  Y  L  R  N  L  T  R  *  L  L  P  L  N  I  V  W  P  L  K  I  D  F  L  Q  L  T  M  M  P  *  M  G  *  I  G  L  N  Q  L  K  M  N  G  F  K  I  M  L  I  *  V  M  F  I  F  L  D  Q  V  L  V  E  T  W  L  T  M  Q  :  G  Y  A  *  H  L  F  Q  T  K  N  *  N  Q  *  R  S  K  G  L  S  C  I  N  H  I  S  V  E  K  I  G  Q  N  L  K  R  S  *  K  M  I  Q  L  C  H  F  K  Q  L  I  R  C  L  T  C  P  Y  Q  K  E  H  *  I  M  I  M  N  I  P  T  H  Y  L  T  E  G  Q  S  I  *  M  I  *  S  H  E  A  G  G  S  L  S  P  V  S  L  K  I  L  *  S  M  P  R  A  T  L  L  I  L  L  K  R  K  V  *  K  L  S  S  S  L  E  M  V  T  M  L  L  S  C  L  S  H  L  R  L  Q  S  Y  L  M  P  L  G  I  S  Y  L  L  L  K  I  K  S  I  E  F  V  L  L  Y  F  L  L  C  K  *  E  R  S  V  *  Y  A  F  L  C  V  *  D  Y  F  K  L  L  Y  F  S  H  E  *  K  F  L  G  L  S  *  F  *  Y  L  L  N  L  *  V  *  R  H  N  I  I  T  Q  K  L  V  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32547" stop="32019"/>
                    <exon start="28402" stop="27939"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIMSSQKFVRPIFDNPFLNIEELPNDTIKRQPEPLTQANFDPNGTSLVISKDVDLDSNKKTWMRIYVPRRIIANHDDDKLPVIFYYHGGGFVFFHVNSYGSDLFCQQLSEKLDAMIIALEYRLAPENRLPAAYDDAIDGLNWIKSTQDEWIQNYADLSNVYLFGSSSGGNLAYHAGLRVASFSDKKLEPVKIKGLILHQPYFSGKNRTESEEKLKDDPTLPFQAIDKMFDLSLPKGTLDHDHEYSNPLLNGGSKHLDDMITRGWGILVTGVSEDPLIDASRNFADFIEKKGVKTFKLFGDGYHVIELFEPSKAAVLFDAIRDLISATKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32816" stop="32577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLRYQIYSEIHIHKKRCEREKSVQSEIKKDKLKSKKNMNSLHLKKKKLHIIIAIFNIIIPSCHLSVIFFFFLYITPNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32818" e_stop="32019"/>
            <exon e_start="31435" e_stop="31220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="0.969" e_score="0.967"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="32818" e_stop="32019" e_length="800"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="0.969">
            <gDNA_intron_boundary i_start="32018" i_stop="31436" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="31435" e_stop="31220" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32818" stop="32116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32566" stop="32019"/>
              <exon start="31435" stop="31220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32547" stop="32148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32544" stop="32019"/>
              <exon start="31435" stop="31406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32542" stop="32080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32541" stop="32157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32540" stop="32019"/>
              <exon start="31435" stop="31411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32540" stop="32056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32540" stop="32165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32534" stop="32129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32529" stop="32049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32525" stop="32099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32524" stop="32050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32512" stop="32187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32511" stop="32019"/>
              <exon start="31435" stop="31402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32510" stop="32166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32501" stop="32044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32462" stop="32123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32446" stop="32072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32439" stop="32226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32401" stop="32019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATATATCTGAGATATCAGATATATTCTGAAATACATATACATAAGAAGAGATGTGAACGAGAAAAGAGCGTACAGAGTGAGATAAAGAAAGACAAGTTAAAAAGTAAGAAAAATATGAATTCATTGCATCTCAAAAAAAAAAAATTACACATAATTATTGCAATTTTCAATATAATAATTCCTAGTTGTCACTTGTCAGTAATATTCTTCTTCTTCTTATATATAACCCCTAATATATAGCTAACTTCCTATAATACATATTTTTGTGATCAATAATTATGTCTAGCCAAAAATTTGTTCGTCCAATTTTTGACAATCCATTTTTGAACATTGAAGAATTACCAAATGATACAATTAAACGTCAACCTGAACCCCTCACACAAGCCAATTTTGATCCCAATGGTACTTCTTTAGTCATATCTAAGGATGTAGACCTAGACAGCAATAAAAAAACATGGATGAGAATCTACGTACCACGACGAATAATTGCAAATCATGACGATGATAAATTGCCAGTTATTTTCTACTATCATGGCGGAGGCTTTGTCTTCTTTCATGTTAATAGTTATGGTTCGGATCTATTTTGTCAACAACTATCTGAGAAACTTGACGCGATGATTATTGCCCTTGAATATCGTTTGGCCCCTGAAAATCGACTTCCTGCAGCTTACGATGATGCCATAGATGGGTTAAATTGGATTAAATCAACTCAAGATGAATGGATTCAAAATTATGCTGATTTGAGTAATGTTTATCTTTTTGGATCAAGTTCTGGTGGAAACTTGGCTTACCATGCAG : GGTTACGCGTAACATCTTTTTCAGACAAAAAACTAGAACCAGTGAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAGAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCAT</gDNA_template>
            <first_frame> T  Y  I  *  D  I  R  Y  I  L  K  Y  I  Y  I  R  R  D  V  N  E  K  R  A  Y  R  V  R  *  R  K  T  S  *  K  V  R  K  I  *  I  H  C  I  S  K  K  K  N  Y  T  *  L  L  Q  F  S  I  *  *  F  L  V  V  T  C  Q  *  Y  S  S  S  S  Y  I  *  P  L  I  Y  S  *  L  P  I  I  H  I  F  V  I  N  N  Y  V  *  P  K  I  C  S  S  N  F  *  Q  S  I  F  E  H  *  R  I  T  K  *  Y  N  *  T  S  T  *  T  P  H  T  S  Q  F  *  S  Q  W  Y  F  F  S  H  I  *  G  C  R  P  R  Q  Q  *  K  N  M  D  E  N  L  R  T  T  T  N  N  C  K  S  *  R  *  *  I  A  S  Y  F  L  L  S  W  R  R  L  C  L  L  S  C  *  *  L  W  F  G  S  I  L  S  T  T  I  *  E  T  *  R  D  D  Y  C  P  *  I  S  F  G  P  *  K  S  T  S  C  S  L  R  *  C  H  R  W  V  K  L  D  *  I  N  S  R  *  M  D  S  K  L  C  *  F  E  *  C  L  S  F  W  I  K  F  W  W  K  L  G  L  P  C  R :   V  T  R  N  I  F  F  R  Q  K  T  R  T  S  E  D  Q  R  A  Y  L  A  S  T  I  F  Q  W  K  K  *  D  R  I  *  R  E  A  K  R  *  S  N  F  A  I  S  S  N  *  *  D  V  *  L  V  L  T  K  R  N  T  R  S  *  S  *  I  F  Q  P   </first_frame>
            <second_frame>  H  I  S  E  I  S  D  I  F  *  N  T  Y  T  *  E  E  M  *  T  R  K  E  R  T  E  *  D  K  E  R  Q  V  K  K  *  E  K  Y  E  F  I  A  S  Q  K  K  K  I  T  H  N  Y  C  N  F  Q  Y  N  N  S  *  L  S  L  V  S  N  I  L  L  L  L  I  Y  N  P  *  Y  I  A  N  F  L  *  Y  I  F  L  *  S  I  I  M  S  S  Q  K  F  V  R  P  I  F  D  N  P  F  L  N  I  E  E  L  P  N  D  T  I  K  R  Q  P  E  P  L  T  Q  A  N  F  D  P  N  G  T  S  L  V  I  S  K  D  V  D  L  D  S  N  K  K  T  W  M  R  I  Y  V  P  R  R  I  I  A  N  H  D  D  D  K  L  P  V  I  F  Y  Y  H  G  G  G  F  V  F  F  H  V  N  S  Y  G  S  D  L  F  C  Q  Q  L  S  E  K  L  D  A  M  I  I  A  L  E  Y  R  L  A  P  E  N  R  L  P  A  A  Y  D  D  A  I  D  G  L  N  W  I  K  S  T  Q  D  E  W  I  Q  N  Y  A  D  L  S  N  V  Y  L  F  G  S  S  S  G  G  N  L  A  Y  H  A   : G  L  R  V  T  S  F  S  D  K  K  L  E  P  V  K  I  K  G  L  I  L  H  Q  P  Y  F  S  G  K  N  R  T  E  S  E  E  K  L  R  D  D  P  T  L  P  F  Q  A  I  D  K  M  F  D  L  S  L  P  K  G  T  L  D  H  D  H  E  Y  S  N  P  </second_frame>
            <third_frame>   I  Y  L  R  Y  Q  I  Y  S  E  I  H  I  H  K  K  R  C  E  R  E  K  S  V  Q  S  E  I  K  K  D  K  L  K  S  K  K  N  M  N  S  L  H  L  K  K  K  K  L  H  I  I  I  A  I  F  N  I  I  I  P  S  C  H  L  S  V  I  F  F  F  F  L  Y  I  T  P  N  I  *  L  T  S  Y  N  T  Y  F  C  D  Q  *  L  C  L  A  K  N  L  F  V  Q  F  L  T  I  H  F  *  T  L  K  N  Y  Q  M  I  Q  L  N  V  N  L  N  P  S  H  K  P  I  L  I  P  M  V  L  L  *  S  Y  L  R  M  *  T  *  T  A  I  K  K  H  G  *  E  S  T  Y  H  D  E  *  L  Q  I  M  T  M  I  N  C  Q  L  F  S  T  I  M  A  E  A  L  S  S  F  M  L  I  V  M  V  R  I  Y  F  V  N  N  Y  L  R  N  L  T  R  *  L  L  P  L  N  I  V  W  P  L  K  I  D  F  L  Q  L  T  M  M  P  *  M  G  *  I  G  L  N  Q  L  K  M  N  G  F  K  I  M  L  I  *  V  M  F  I  F  L  D  Q  V  L  V  E  T  W  L  T  M  Q  :  G  Y  A  *  H  L  F  Q  T  K  N  *  N  Q  *  R  S  K  G  L  S  C  I  N  H  I  S  V  E  K  I  G  Q  N  L  K  R  S  *  E  M  I  Q  L  C  H  F  K  Q  L  I  R  C  L  T  C  P  Y  Q  K  E  H  *  I  M  I  M  N  I  P  T  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32547" stop="32019"/>
                    <exon start="31435" stop="31221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIMSSQKFVRPIFDNPFLNIEELPNDTIKRQPEPLTQANFDPNGTSLVISKDVDLDSNKKTWMRIYVPRRIIANHDDDKLPVIFYYHGGGFVFFHVNSYGSDLFCQQLSEKLDAMIIALEYRLAPENRLPAAYDDAIDGLNWIKSTQDEWIQNYADLSNVYLFGSSSGGNLAYHAGLRVTSFSDKKLEPVKIKGLILHQPYFSGKNRTESEEKLRDDPTLPFQAIDKMFDLSLPKGTLDHDHEYSNP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32816" stop="32577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLRYQIYSEIHIHKKRCEREKSVQSEIKKDKLKSKKNMNSLHLKKKKLHIIIAIFNIIIPSCHLSVIFFFFLYITPNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="58822" PGL_stop="58147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58822" e_stop="58147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="58822" e_stop="58147" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58822" stop="58147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58802" stop="58228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58800" stop="58228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGTGGAAAGGTACAAGGCTCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCATATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGACAGGAGGGGAAGCATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCACCTAGTCAATGGAATAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTAATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAGAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTGTTGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTGAATTTGCTAGATAACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTAGTGAGTTCGGATTACGTGGCACTAAACCAGTTAACACACCTTTGGAAACAAATCTGAAGCTTACATCAGTTGACTGTGATG</gDNA_template>
            <first_frame> A  V  E  R  Y  K  A  R  L  V  A  K  G  Y  S  Q  Q  E  G  L  D  Y  T  E  T  F  S  P  V  S  K  M  V  T  V  R  S  V  V  A  V  V  A  A  K  H  W  S  I  F  H  M  D  V  H  N  A  F  L  Q  G  D  L  V  E  E  V  Y  L  E  V  P  S  G  F  A  R  Q  E  G  K  H  V  V  C  K  L  H  K  S  L  Y  G  L  K  Q  A  P  S  Q  W  N  K  K  L  T  D  A  L  V  Q  L  G  F  S  Q  S  N  F  D  Y  S  L  F  T  K  T  V  Q  G  E  L  V  I  V  L  V  Y  V  D  D  L  L  V  T  G  S  N  T  D  L  I  L  Q  T  R  N  D  L  K  L  K  F  K  M  K  D  L  G  E  L  K  F  F  L  G  I  E  F  A  R  *  Q  K  G  I  V  M  S  Q  R  K  Y  A  L  E  L  I  S  E  F  G  L  R  G  T  K  P  V  N  T  P  L  E  T  N  L  K  L  T  S  V  D  C  D  </first_frame>
            <second_frame>  L  W  K  G  T  R  L  D  L  W  Q  R  V  I  A  N  K  R  G  *  I  T  L  R  P  S  L  Q  F  L  R  W  L  L  S  G  R  L  W  L  W  *  Q  L  N  I  G  L  F  F  I  W  M  F  I  M  L  F  F  K  G  I  *  W  R  R  C  I  *  R  F  L  L  V  L  P  D  R  R  G  S  M  L  S  A  N  Y  I  S  L  F  M  D  S  N  R  H  L  V  N  G  I  R  N  S  Q  M  H  W  Y  N  L  A  S  H  K  V  I  L  T  I  L  Y  S  P  R  Q  F  K  E  S  W  *  L  S  *  F  M  W  M  I  C  W  *  Q  E  A  I  Q  T  *  F  Y  K  Q  G  M  T  *  S  *  S  S  K  *  K  I  L  E  N  *  S  F  F  *  E  L  N  L  L  D  N  K  R  E  *  *  *  A  K  G  S  M  H  W  N  *  L  V  S  S  D  Y  V  A  L  N  Q  L  T  H  L  W  K  Q  I  *  S  L  H  Q  L  T  V  M </second_frame>
            <third_frame>   C  G  K  V  Q  G  S  T  C  G  K  G  L  *  P  T  R  G  V  R  L  H  *  D  L  L  S  S  F  *  D  G  Y  C  Q  V  G  C  G  C  G  S  S  *  T  L  V  Y  F  S  Y  G  C  S  *  C  F  S  S  R  G  F  S  G  G  G  V  F  R  G  S  F  W  F  C  Q  T  G  G  E  A  C  C  L  Q  I  T  *  V  S  L  W  T  Q  T  G  T  *  S  M  E  *  E  T  H  R  C  I  G  T  T  W  L  L  T  K  *  F  *  L  F  F  I  H  Q  D  S  S  R  R  A  G  N  C  L  S  L  C  G  *  F  V  G  N  R  K  Q  Y  R  L  D  S  T  N  K  E  *  L  K  A  K  V  Q  N  E  R  S  W  R  I  E  V  F  S  R  N  *  I  C  *  I  T  K  G  N  S  D  E  P  K  E  V  C  I  G  T  N  *  *  V  R  I  T  W  H  *  T  S  *  H  T  F  G  N  K  S  E  A  Y  I  S  *  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58822" stop="58277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVERYKARLVAKGYSQQEGLDYTETFSPVSKMVTVRSVVAVVAAKHWSIFHMDVHNAFLQGDLVEEVYLEVPSGFARQEGKHVVCKLHKSLYGLKQAPSQWNKKLTDALVQLGFSQSNFDYSLFTKTVQGELVIVLVYVDDLLVTGSNTDLILQTRNDLKLKFKMKDLGELKFFLGIEFAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="66051" PGL_stop="66717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66051" e_stop="66717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="66051" e_stop="66717" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66051" stop="66665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66084" stop="66652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66135" stop="66649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66136" stop="66645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66309" stop="66717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTACGCGTAGCATCTTTTTCAGACAAAGAACTAGAACCAGTAAAGATCAAAGGGCTTATCTTGCATCAACCATATTTCAGTGGAAAAAATAGGACAGAATCTGAAGAGAAGCTAAAAGATGATCCAACTTTGCCATTTCAAGCAATTGATAAGATGTTTGACTTGTCCTTACCAAAAGGAACACTAGATCATGATCATGAATATTCCAACCCATTACTTAACGGAGGGTCAAAGCATTTAGATGATATGATCACACGAGGCTGGGGGATCCTTGTCACCGGTGTCTCTGAAGATCCTTTAATCGATGCCTCGCGCAACTTTGCTGATTTTATTGAAAAGAAAGGTGTAAAAACTTTCAAGCTCTTTGGAGATGGTTACCATGTTATTGAGTTGTTTGAGCCATCTAAGGCTGCAGTCTTATTTGATGCCATTAGGGATCTCATATCTGCTACTAAAAATTAAAAGTATTGAGTTTGTTTTGTTATATTTCCTTTTGTGCAAATAAGAGAGGAGTGTATAGTATGCATTCCTTTGTGTGTAAGATTACTTTAAGTTGTTATATTTTTCTCATGAATAAAAGTTTTTAGGATTGAGTTAGTTCTAATATCTACTAAATTTGTAAGTTTAAAGACATAATATCATCACCCAAAAATTAGTTGCAAAGC</gDNA_template>
            <first_frame> G  Y  A  *  H  L  F  Q  T  K  N  *  N  Q  *  R  S  K  G  L  S  C  I  N  H  I  S  V  E  K  I  G  Q  N  L  K  R  S  *  K  M  I  Q  L  C  H  F  K  Q  L  I  R  C  L  T  C  P  Y  Q  K  E  H  *  I  M  I  M  N  I  P  T  H  Y  L  T  E  G  Q  S  I  *  M  I  *  S  H  E  A  G  G  S  L  S  P  V  S  L  K  I  L  *  S  M  P  R  A  T  L  L  I  L  L  K  R  K  V  *  K  L  S  S  S  L  E  M  V  T  M  L  L  S  C  L  S  H  L  R  L  Q  S  Y  L  M  P  L  G  I  S  Y  L  L  L  K  I  K  S  I  E  F  V  L  L  Y  F  L  L  C  K  *  E  R  S  V  *  Y  A  F  L  C  V  *  D  Y  F  K  L  L  Y  F  S  H  E  *  K  F  L  G  L  S  *  F  *  Y  L  L  N  L  *  V  *  R  H  N  I  I  T  Q  K  L  V  A  K  </first_frame>
            <second_frame>  A  T  R  S  I  F  F  R  Q  R  T  R  T  S  K  D  Q  R  A  Y  L  A  S  T  I  F  Q  W  K  K  *  D  R  I  *  R  E  A  K  R  *  S  N  F  A  I  S  S  N  *  *  D  V  *  L  V  L  T  K  R  N  T  R  S  *  S  *  I  F  Q  P  I  T  *  R  R  V  K  A  F  R  *  Y  D  H  T  R  L  G  D  P  C  H  R  C  L  *  R  S  F  N  R  C  L  A  Q  L  C  *  F  Y  *  K  E  R  C  K  N  F  Q  A  L  W  R  W  L  P  C  Y  *  V  V  *  A  I  *  G  C  S  L  I  *  C  H  *  G  S  H  I  C  Y  *  K  L  K  V  L  S  L  F  C  Y  I  S  F  C  A  N  K  R  G  V  Y  S  M  H  S  F  V  C  K  I  T  L  S  C  Y  I  F  L  M  N  K  S  F  *  D  *  V  S  S  N  I  Y  *  I  C  K  F  K  D  I  I  S  S  P  K  N  *  L  Q  S </second_frame>
            <third_frame>   L  R  V  A  S  F  S  D  K  E  L  E  P  V  K  I  K  G  L  I  L  H  Q  P  Y  F  S  G  K  N  R  T  E  S  E  E  K  L  K  D  D  P  T  L  P  F  Q  A  I  D  K  M  F  D  L  S  L  P  K  G  T  L  D  H  D  H  E  Y  S  N  P  L  L  N  G  G  S  K  H  L  D  D  M  I  T  R  G  W  G  I  L  V  T  G  V  S  E  D  P  L  I  D  A  S  R  N  F  A  D  F  I  E  K  K  G  V  K  T  F  K  L  F  G  D  G  Y  H  V  I  E  L  F  E  P  S  K  A  A  V  L  F  D  A  I  R  D  L  I  S  A  T  K  N  *  K  Y  *  V  C  F  V  I  F  P  F  V  Q  I  R  E  E  C  I  V  C  I  P  L  C  V  R  L  L  *  V  V  I  F  F  S  *  I  K  V  F  R  I  E  L  V  L  I  S  T  K  F  V  S  L  K  T  *  Y  H  H  P  K  I  S  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0097H19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66053" stop="66514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRVASFSDKELEPVKIKGLILHQPYFSGKNRTESEEKLKDDPTLPFQAIDKMFDLSLPKGTLDHDHEYSNPLLNGGSKHLDDMITRGWGILVTGVSEDPLIDASRNFADFIEKKGVKTFKLFGDGYHVIELFEPSKAAVLFDAIRDLISATKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 156 chains have been computed
$ 
$ memory statistics:
$ 235640 bytes spliced alignments in total
$ 85 spliced alignments have been stored
$ 2772 bytes was the average size of a spliced alignment
$ 10480 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2620 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 182 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:38:16
-->
